Citrus Sinensis ID: 002866
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 872 | 2.2.26 [Sep-21-2011] | |||||||
| Q96EN8 | 888 | Molybdenum cofactor sulfu | yes | no | 0.247 | 0.243 | 0.281 | 3e-16 | |
| Q8LGM7 | 816 | Molybdenum cofactor sulfu | N/A | no | 0.321 | 0.343 | 0.252 | 8e-16 | |
| Q16P90 | 764 | Molybdenum cofactor sulfu | N/A | no | 0.261 | 0.298 | 0.281 | 1e-15 | |
| Q16GH0 | 764 | Molybdenum cofactor sulfu | N/A | no | 0.262 | 0.299 | 0.276 | 2e-15 | |
| Q9N0E7 | 882 | Molybdenum cofactor sulfu | yes | no | 0.272 | 0.269 | 0.254 | 2e-14 | |
| B0WSX1 | 760 | Molybdenum cofactor sulfu | N/A | no | 0.202 | 0.232 | 0.294 | 7e-14 | |
| Q7QFL7 | 770 | Molybdenum cofactor sulfu | yes | no | 0.324 | 0.367 | 0.268 | 1e-13 | |
| Q9C5X8 | 819 | Molybdenum cofactor sulfu | no | no | 0.314 | 0.334 | 0.243 | 3e-13 | |
| Q14CH1 | 862 | Molybdenum cofactor sulfu | yes | no | 0.253 | 0.256 | 0.252 | 3e-13 | |
| Q16P87 | 762 | Molybdenum cofactor sulfu | N/A | no | 0.261 | 0.299 | 0.257 | 6e-13 |
| >sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 54/270 (20%)
Query: 136 IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEIT-ANLSNHALYGGAE 194
+ +LRA E+ L+ V LD+ G LFS Q ES T L E T N + +
Sbjct: 35 LRELRAREFSRLAGTVYLDHAGATLFSQSQL----ESFTSDLMENTYGNPHSQNISSKLT 90
Query: 195 KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS 254
TVE ++ RI+ H + +Y ++FT +A KL+AE++P
Sbjct: 91 HDTVEQ-VRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAFP----------------- 132
Query: 255 VNWMAQSAKEKGAK----------VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG- 303
W++Q + G++ V + + ST +R + + SA+
Sbjct: 133 --WVSQGPESSGSRFCYLTDSHTSVVGMRNVTMAINVISTPVRPEDLWSAEERSASASNP 190
Query: 304 ------LFVFPVQSRVTGAKYSYQWM---------ALAQQNHWHVLLDAGSLGPKDMDSL 348
LF +P QS +G +Y W+ ++ W VLLDA S L
Sbjct: 191 DCQLPHLFCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASY--VSTSPL 248
Query: 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378
LS + DF+ SFY++FGF PTG G LL+
Sbjct: 249 DLSAHQADFVPISFYKIFGF-PTGLGALLV 277
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 145/341 (42%), Gaps = 61/341 (17%)
Query: 118 EAFSKFLTMYPKYQSSDK-IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFS 176
E F K Y Y +S K ID++RA E+ L+ V LD+ G L+S Q ++ +
Sbjct: 8 EQFLKEFGSYYGYANSPKNIDEIRATEFKRLNDTVYLDHAGATLYSESQMEAVFKDLNST 67
Query: 177 L-----SEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231
L S+ T +L+ + G A + +++ N EY +FT +A KL
Sbjct: 68 LYGNPHSQSTCSLATEDIVGKA---------RQQVLSFFNASPREYSCIFTSGATAALKL 118
Query: 232 LAESYPFHTNKKLLTMFDYESQ-SVNWMAQSAKEKGAKVYSAWFK----------WPTLK 280
+ E++P+ +N M+ E+ SV + + A KGA ++ + LK
Sbjct: 119 VGETFPWSSNSSF--MYSMENHNSVLGIREYALSKGAAAFAVDIEDTHVGESESPQSNLK 176
Query: 281 LCSTDL--RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNH-------- 330
L + R + K + LF FP + +G K+ + + ++
Sbjct: 177 LTQHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESSQ 236
Query: 331 -----WHVLLDAG---SLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382
W VL+DA + P + LS+F+ DF++ SFY++FG+ PTG G L+++K
Sbjct: 237 YSRGCWLVLIDAAKGCATNPPN-----LSMFKADFVVFSFYKLFGY-PTGLGALIVRKDA 290
Query: 383 MGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAGVED 423
++ G+ I VD R GVE+
Sbjct: 291 AKLMKKTYFSGGTVTAAIA---------DVDFFKRREGVEE 322
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16P90|MOCO3_AEDAE Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 42/270 (15%)
Query: 143 EYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHD- 201
E+ L K LD+ G T Y +S S+ E A LY D
Sbjct: 22 EFSRLKEKCYLDHAG--------TTLYADSQIRSVCEGLA----QNLYCNPHTSRTTEDL 69
Query: 202 ---IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWM 258
++ R++ H N +EY L+FT ++ KLLAESY F + + D + +
Sbjct: 70 LDQVRYRVLRHFNTRSSEYSLIFTSGTTASLKLLAESYEFAPEGAFVYLKDSHTSVLGMR 129
Query: 259 AQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY 318
E+ +P + L K++ S +R + ++ L VFP Q G KY
Sbjct: 130 EIVGTER---------IYPVER---EQLLKELDSSERSDSEHSS-LIVFPAQCNFNGVKY 176
Query: 319 SYQWMALAQQN--------HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDP 370
+ + Q+N + V LDA S L LS ++PDF+ SFY++FG+ P
Sbjct: 177 PLELVRKIQRNGISGYGKERFRVCLDAASFVSTSF--LDLSKYQPDFVCLSFYKIFGY-P 233
Query: 371 TGFGCLLIKKSVMGSLQNQSGQTGSGMVKI 400
TG G LL+ + L+ + G G VKI
Sbjct: 234 TGLGALLVHHTAADQLRKK--YYGGGTVKI 261
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16GH0|MOCO1_AEDAE Molybdenum cofactor sulfurase 1 OS=Aedes aegypti GN=mal1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 116/271 (42%), Gaps = 42/271 (15%)
Query: 142 NEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHD 201
NE+ L K LD+ G T Y +S S+ E A LY D
Sbjct: 21 NEFSRLKEKCYLDHAG--------TTLYADSQIRSVCEGLA----QNLYCNPHTSRTTED 68
Query: 202 ----IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW 257
++ R++ H N +EY L+FT ++ KLLAES+ F + + D + +
Sbjct: 69 LLDQVRYRVLRHFNTRSSEYSLIFTSGTTASLKLLAESFEFAPEGAFVYLKDSHTSVLGM 128
Query: 258 MAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK 317
E+ +P + L K++ S +R + ++ L VFP Q G K
Sbjct: 129 REIVGTER---------IYPVER---EQLLKELDSSERSDNEHSS-LIVFPAQCNFNGVK 175
Query: 318 YSYQWMALAQQN--------HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFD 369
Y + + Q++ + V LDA S L LS ++PDF+ SFY++FG+
Sbjct: 176 YPLELVRKIQRDGISGYGKERFRVCLDAASFVSTSF--LDLSKYQPDFVCLSFYKIFGY- 232
Query: 370 PTGFGCLLIKKSVMGSLQNQSGQTGSGMVKI 400
PTG G LL+ + L+ + G G VKI
Sbjct: 233 PTGLGALLVHHTAADQLRKK--YYGGGTVKI 261
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 29/267 (10%)
Query: 136 IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK 195
+ +LRA E+ L+ V LD+ G LF Q + + + + N + +
Sbjct: 35 LHELRAREFGRLAGTVYLDHAGTTLFPQSQITSFMKDL---MENVYGNPHSQNISSKLTH 91
Query: 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT--NKKLLTMFDYESQ 253
TVE ++ RI+ H + +Y ++FT +A KL+AE++P+ + + + F Y +
Sbjct: 92 DTVEQ-VRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTD 150
Query: 254 SVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDL---RKQISSKKRRKKDSAAGLFVFPVQ 310
S + G + +A ++ + D+ +Q ++ LF +P Q
Sbjct: 151 SHTSVV------GMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHLFCYPAQ 204
Query: 311 SRVTGAKYSYQWMA---------LAQQNHWHVLLDAGS-LGPKDMDSLGLSLFRPDFIIT 360
S +G +Y W+ ++ W VLLDA + +G +D LS+ + DF+
Sbjct: 205 SNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVHQADFVPI 261
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQ 387
SFY++FGF PTG G LL+ + L+
Sbjct: 262 SFYKIFGF-PTGLGALLVNNRLAALLR 287
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B0WSX1|MOCO2_CULQU Molybdenum cofactor sulfurase 2 OS=Culex quinquefasciatus GN=mal2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 30/207 (14%)
Query: 202 IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQS 261
++ R++ H +EYGLVFT A KL+AE + F + D + + A
Sbjct: 72 VRFRVLRHFGTHPSEYGLVFTSGTTGALKLVAECFDFGDEGAFVYTRDNHTSVLGMRAVV 131
Query: 262 AKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ 321
E+ + + DLR R + L VFP Q G KY
Sbjct: 132 GTER------------IVPIGREDLR-----GGRSTGGGKSSLVVFPAQCNFNGFKYPLG 174
Query: 322 WMALAQQN--------HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGF 373
+ Q+N +HV LDA S ++L L+ +P F+ SFY++FGF PTG
Sbjct: 175 LVEDIQRNGLVGFDGDRFHVCLDAASF--VSTNALDLAKHQPSFVCLSFYKIFGF-PTGL 231
Query: 374 GCLLIKKSVMGSLQNQSGQTGSGMVKI 400
G LL+ +S L+ + G G VKI
Sbjct: 232 GALLVHRSAQNLLKKR--YYGGGTVKI 256
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Culex quinquefasciatus (taxid: 7176) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q7QFL7|MOCOS_ANOGA Molybdenum cofactor sulfurase OS=Anopheles gambiae GN=mal PE=3 SV=5 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 142/358 (39%), Gaps = 75/358 (20%)
Query: 135 KIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE 194
KI+Q ++ L+ K LD+ G L Y ES ++ E+ A LY
Sbjct: 14 KIEQ----DFSRLADKCYLDHAGTAL--------YGESQLRAVQELLAG----GLYCNPH 57
Query: 195 KGTVEHD----IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDY 250
D ++ R++ +Y LVFT ++ KL+AES+ F F Y
Sbjct: 58 TSRTMEDLIDLVRYRVLRWFQTRPADYSLVFTSGTTASLKLVAESFEFGPGDAEPGSFVY 117
Query: 251 ESQS-VNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKK--RRKKDSAAGLFVF 307
S + + + +V + +L + ++ + RR+ L VF
Sbjct: 118 LRDSHTSVLGMRELVRTGRVQP---------IERAELLQALNEPEDPRRQHPHRPSLLVF 168
Query: 308 PVQSRVTGAKYSYQWMALAQQN--------HWHVLLDAGSLGPKDMDSLGLSLFRPDFII 359
P Q GAKY + L ++N +HV LDA S L LS +RP F+
Sbjct: 169 PAQCNFNGAKYPLELCELIERNGLRGYGGDAFHVCLDAAS--HVSTSPLDLSRYRPSFVC 226
Query: 360 TSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGL-DRL 418
SFY++FG+ PTG G LL+++ L+ + G G VKI P + D L DRL
Sbjct: 227 LSFYKIFGY-PTGLGALLVRRDAEPLLRGKR-YYGGGTVKIALSGPDRFHERRDALPDRL 284
Query: 419 AGVEDDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPPLWFSGKKNHKRLSPKPT 476
ED G +N IA+ LP L + RL P PT
Sbjct: 285 ---ED----------------------GTINFLSIAALLPCL-----ETLTRLIPGPT 312
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Anopheles gambiae (taxid: 7165) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9C5X8|MOCOS_ARATH Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 138/316 (43%), Gaps = 42/316 (13%)
Query: 118 EAFSKFLTMYPKYQSSDK-IDQLRANEYLHLSPKVC-LDYCGFGLFSYIQTLHYWESSTF 175
EAF K Y Y K I ++R E+ L V LD+ G L+S +Q + ++ T
Sbjct: 2 EAFLKEFGDYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFT- 60
Query: 176 SLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES 235
S + N + + A + D + +++++ N +Y +FT +A KL+ E+
Sbjct: 61 --SNVFGNPHSQSDISSATSDLIA-DARHQVLEYFNASPEDYSCLFTSGATAALKLVGET 117
Query: 236 YPFHTNKKLL-TMFDYES----------QSVNWMAQSAKEKGAKVYSAWFKWPTLKLCST 284
+P+ + L TM ++ S Q + A +E + P++K+
Sbjct: 118 FPWTQDSNFLYTMENHNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHR 177
Query: 285 DLRKQISSK--KRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQN------------- 329
++ + +SK K + +A LF FP + +G +++ + L ++N
Sbjct: 178 AVQMRNTSKLQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKS 237
Query: 330 -HWHVLLDAG---SLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGS 385
W VL+DA + P D LS + DF++ SFY++FG+ PTG G LL++
Sbjct: 238 KRWMVLIDAAKGCATLPPD-----LSEYPADFVVLSFYKLFGY-PTGLGALLVRNDAAKL 291
Query: 386 LQNQSGQTGSGMVKIT 401
L+ G+ I
Sbjct: 292 LKKTYFSGGTVAASIA 307
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Modulates cold stress- and osmotic stress-responsive gene expression by acting as key regulator of abscisic acid (ABA) biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 113/273 (41%), Gaps = 52/273 (19%)
Query: 136 IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK 195
+ +LR E+ L+ V LD+ G LF Q ++ + + + N + +
Sbjct: 35 MSELRDQEFGRLAGTVYLDHAGATLFPQSQLTNFTKDL---MENVYGNPHSQNITSKLTH 91
Query: 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV 255
TVE ++ RI+ H + +Y ++FT +A +L+AE++P
Sbjct: 92 DTVEQ-VRYRILTHFHTTPEDYIVIFTAGSTAALRLVAEAFP------------------ 132
Query: 256 NWMAQSAKEKGAK-VYSAWFKWPTLKLCSTDLRKQISSKKRRKKD--SAAG--------- 303
W+++S + G+ Y + + ++S + +D SA G
Sbjct: 133 -WVSRSPENSGSHFCYLTDNHTSVVGMRKVAAAMSVTSIPVKPEDMWSAEGKDAGACDPD 191
Query: 304 -----LFVFPVQSRVTGAKYSYQWM---------ALAQQNHWHVLLDAGSLGPKDMDSLG 349
LF +P QS +G +Y W+ + W VLLDA S L
Sbjct: 192 CQLPHLFCYPAQSNFSGTRYPLSWVEEVKSGRRSPVNAPGKWFVLLDAASY--VSTSPLD 249
Query: 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382
LS + DFI SFY++FG PTG G LL+ K V
Sbjct: 250 LSAHQADFIPISFYKIFGL-PTGLGALLVNKHV 281
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q16P87|MOCO2_AEDAE Molybdenum cofactor sulfurase 2 OS=Aedes aegypti GN=mal2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 52/280 (18%)
Query: 143 EYLHLSPKVCLDYCGFGLF--SYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEH 200
E+ L K +D+ G L+ S I+ +H + + ++ L+ G +
Sbjct: 18 EFTRLKGKHYMDHAGTTLYAESQIRAVHDMLAQNLFCNPHSSPLT----------GKLLQ 67
Query: 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQ 260
++ R++ N ++Y LVFT ++ KL+AES+ F + +
Sbjct: 68 QVRHRLLRFFNTSPSDYSLVFTSGATASLKLVAESFRFRPPDE---------------PE 112
Query: 261 SAKEKGAKVYSAWFKWPTLKLCST------------DLRKQISSKKRRKKDSAAGLFVFP 308
S+ ++GA VY L + S +L + + R + L VFP
Sbjct: 113 SSPDEGAFVYLRDNHTSVLGMRSVVGTERIDPLEPEELLRHLKVSARCSGGTKPSLLVFP 172
Query: 309 VQSRVTGAKYSYQWMALAQQN--------HWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
Q+ AKY + QQN ++V LDA S + L L +RPDF+
Sbjct: 173 AQNNFNAAKYPLDLVEEIQQNGLSGYDDERFYVCLDAASYVSTNF--LDLGRYRPDFVCM 230
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKI 400
SFY++FG+ PTG G LLI+ L + G G +KI
Sbjct: 231 SFYKIFGY-PTGLGALLIRNGSEDVLDKK--YYGGGTIKI 267
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 872 | ||||||
| 147866678 | 942 | hypothetical protein VITISV_009834 [Viti | 0.995 | 0.921 | 0.716 | 0.0 | |
| 297745688 | 801 | unnamed protein product [Vitis vinifera] | 0.832 | 0.906 | 0.720 | 0.0 | |
| 297802248 | 895 | hypothetical protein ARALYDRAFT_912653 [ | 0.928 | 0.905 | 0.613 | 0.0 | |
| 297797679 | 871 | hypothetical protein ARALYDRAFT_496904 [ | 0.910 | 0.911 | 0.593 | 0.0 | |
| 15240136 | 870 | catalytic/ pyridoxal phosphate binding p | 0.927 | 0.929 | 0.591 | 0.0 | |
| 125537235 | 830 | hypothetical protein OsI_38943 [Oryza sa | 0.920 | 0.967 | 0.543 | 0.0 | |
| 224094503 | 893 | predicted protein [Populus trichocarpa] | 0.491 | 0.480 | 0.906 | 0.0 | |
| 255562713 | 935 | molybdopterin cofactor sulfurase, putati | 0.486 | 0.453 | 0.910 | 0.0 | |
| 224084235 | 909 | predicted protein [Populus trichocarpa] | 0.491 | 0.471 | 0.897 | 0.0 | |
| 147810113 | 1281 | hypothetical protein VITISV_039637 [Viti | 0.511 | 0.348 | 0.825 | 0.0 |
| >gi|147866678|emb|CAN83672.1| hypothetical protein VITISV_009834 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1236 bits (3198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/895 (71%), Positives = 719/895 (80%), Gaps = 27/895 (3%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MH+SLWKPISHCAALIL KK RR+DGS T D+KR PSILR+L+E++LREALEEASEDG
Sbjct: 50 MHISLWKPISHCAALILVKKG-RRRDGSGLTEDVKRKPSILRQLQENKLREALEEASEDG 108
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SL KSQDI+SE ANQD + GRSRSLARLHAQ+EFLRATALAAERVF + +SIP+L +AF
Sbjct: 109 SLVKSQDIDSES-ANQDGNFGRSRSLARLHAQKEFLRATALAAERVFCSADSIPNLRDAF 167
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLS---PKVCLDYCGFGLFSYIQTLHYWESSTFSL 177
SKFLTMYPK+QS++KIDQLR++EY HL+ KVCLD CGFGLFSY+QT H WESS FSL
Sbjct: 168 SKFLTMYPKFQSTEKIDQLRSDEYEHLAELYAKVCLDXCGFGLFSYLQTHHNWESSAFSL 227
Query: 178 SEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP 237
SEITANLSNHALYGGAEKGTVEHDIKTRIMD+LNIPENEYGLVFTVSRGSAFKLLAESYP
Sbjct: 228 SEITANLSNHALYGGAEKGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYP 287
Query: 238 FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297
F TN++LLTMFD+ESQSVNWMAQSAKEKGAKVYSAWF+WPTLKLCS +LRKQIS+KKRRK
Sbjct: 288 FQTNRRLLTMFDHESQSVNWMAQSAKEKGAKVYSAWFRWPTLKLCSRELRKQISNKKRRK 347
Query: 298 KDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357
KDSAAGLFVFPVQSRVTGAKYSYQWMALAQQN+WHVLLDAGSLGPKDMDSLGLSLFRPDF
Sbjct: 348 KDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDF 407
Query: 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDR 417
IITSFYRVFG DPTGFGCLLIKKSVMGSLQNQ G+TGSGMV+ E L +S D
Sbjct: 408 IITSFYRVFGSDPTGFGCLLIKKSVMGSLQNQCGRTGSGMVRDVFETELDQDNSSDRDGA 467
Query: 418 LAGVE-----------------DDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPPL 460
+E +DE SDNS+WIDLGQSP GSDN+GQL KQK SPLPP
Sbjct: 468 STIIEEAESISIGEVMKSPIFSEDELSDNSYWIDLGQSPFGSDNSGQLTKQKAGSPLPPS 527
Query: 461 WFSGKKNHKRLSPKPTWKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEV 520
WFSG++N+K LSPKP + SPI+DD+ NL DD VLSFDAAVLSVSQ+LD +K +
Sbjct: 528 WFSGRRNNKHLSPKPALNMSKSPIYDDRRINLRLHDD-PVLSFDAAVLSVSQELDLIKGI 586
Query: 521 PEEEQFSGMTHNFRNNNKSSGCPRVEEIQEEPSISKDS--TGFASNSVMNGSCLNNSSSS 578
PEEE F + F + K + V EIQEEP +++ TG + +NG N +S+
Sbjct: 587 PEEEHFGELNPAFGTSGKKADSQHVGEIQEEPDGREETMLTGCKLSPTVNGFGTRNRTSA 646
Query: 579 SQHHGLANGLTSEICSEVKESAIRRETEGEFRLLGRREGSRYIGGRFFGLE--DEHPSRG 636
S L N SE C E KESAIRRETEGEFRLLGRREG+R+ GGRFFGLE D S G
Sbjct: 647 SLXGNLENTSMSESCQETKESAIRRETEGEFRLLGRREGNRFAGGRFFGLEETDLAASMG 706
Query: 637 RRVSFSMEDNRKERLSHTMETGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDH 696
RRVSF+MEDNRKE LS +E GEVS+T+ D++ S+G+YGDG +W RREPEIICRHLDH
Sbjct: 707 RRVSFTMEDNRKESLSQFLEPGEVSLTTLGDDESMSEGDYGDGLEWGRREPEIICRHLDH 766
Query: 697 INMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNV 756
INMLGLNKTT RLR+LINWLVTSLLQLR S SD + LV IYGPKIKYERGAAVAFNV
Sbjct: 767 INMLGLNKTTLRLRYLINWLVTSLLQLRLSSSDLDXGVPLVQIYGPKIKYERGAAVAFNV 826
Query: 757 RDKERGLINPEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGR 816
R+ G+I+PEVVQ+LAEK GISLGIGFLSHIRI+DSP+Q G +DT LC+ M N R
Sbjct: 827 RNSHGGMIHPEVVQRLAEKNGISLGIGFLSHIRIVDSPKQHRGGLDPEDTALCKXMANCR 886
Query: 817 HDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNPAFVREGALPTVEESSE 871
DGK F RVEVVTASL FLTNFEDVYK+WAFVAKFLN +FV L TV E SE
Sbjct: 887 QDGKDMFFRVEVVTASLSFLTNFEDVYKMWAFVAKFLNSSFVEGDGLSTVSEGSE 941
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745688|emb|CBI40973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/787 (72%), Positives = 629/787 (79%), Gaps = 61/787 (7%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MHLSLWKPISHCA+LI+DKKS RRKDGSDSTV+ KRNPSILRKL+E++LREALEEASEDG
Sbjct: 21 MHLSLWKPISHCASLIMDKKS-RRKDGSDSTVESKRNPSILRKLQENKLREALEEASEDG 79
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SL KSQD++ E ANQDE LGRSRSLARLH QREFLRATALAAER FE+EESIPDL EAF
Sbjct: 80 SLVKSQDMDPESPANQDEGLGRSRSLARLHNQREFLRATALAAERTFESEESIPDLHEAF 139
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEI 180
+KFLTMYPKYQSS+KID LRA+EY HL+PKVCLDYCGFGLFSYIQT+HYWESSTF+LSEI
Sbjct: 140 TKFLTMYPKYQSSEKIDHLRADEYGHLAPKVCLDYCGFGLFSYIQTMHYWESSTFNLSEI 199
Query: 181 TANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 240
TANLSNHALYGGAEKGT+EHDIKTRIMD+LNIPENEYGLVFTVSRGSAFKLLAESYPFHT
Sbjct: 200 TANLSNHALYGGAEKGTMEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 259
Query: 241 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300
NK+LLTMFD+ESQSV+WMAQ+AKEKGAKV+SAWFKWPTLKLCSTDLRK+IS KK+RKKDS
Sbjct: 260 NKRLLTMFDHESQSVSWMAQAAKEKGAKVHSAWFKWPTLKLCSTDLRKRISHKKKRKKDS 319
Query: 301 AAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
AAGLFVFPVQSRVTGAKYSYQWMALAQQN+WHVLLDAGSLGPKDMDSLGLSLFRPDFIIT
Sbjct: 320 AAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 379
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGS----GMVKITPEYPLYLSDSVDGLD 416
SFYR P F + V + + Q S G I E S SV +
Sbjct: 380 SFYR--SPLPPAFSGVYTSAQVRDVFETELDQDNSSDRDGASTILEETE---SISVGEVM 434
Query: 417 RLAGVEDDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPPLWFSGKKNHKRLSPKPT 476
+ +DESSDNSFWIDLG SPLGSDNAGQ+NKQK+ASPLPP WFSGKKNHK LSPKP+
Sbjct: 435 KSPVFSEDESSDNSFWIDLGHSPLGSDNAGQVNKQKLASPLPPFWFSGKKNHKWLSPKPS 494
Query: 477 WKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFSGMTHNFRNN 536
KI SPI+DD+E LG +DHHVLSFDAAVLSVSQ+LD VK +PEEEQFS R N
Sbjct: 495 -KISSSPIYDDREIKLGPKEDHHVLSFDAAVLSVSQELDHVKGIPEEEQFSEANPTSRIN 553
Query: 537 NKSSGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLTSEICSEV 596
K S ++EIQEEP + N +NG S+
Sbjct: 554 GKDSDHQHIQEIQEEPETKPTRSML--NCTVNG------------------------SKT 587
Query: 597 KESAIRRETEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHTME 656
KESAIRRETEGEFRLLGRREG+R+ DNRKERLSHT+E
Sbjct: 588 KESAIRRETEGEFRLLGRREGNRFA-----------------------DNRKERLSHTLE 624
Query: 657 TGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDHINMLGLNKTTCRLRFLINWL 716
GE+SVTS DE+YSSDG+Y DGQ+W+RREPEIIC+H++H+N+LGL+KTTCRLRFLINWL
Sbjct: 625 QGEISVTSL-DEEYSSDGDYDDGQEWDRREPEIICQHINHVNLLGLSKTTCRLRFLINWL 683
Query: 717 VTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKE 776
VTSLLQLR ++G LVHIYGPKIKYERGAAVAFN+RD+ RGLINPEVVQKLAEKE
Sbjct: 684 VTSLLQLRLPGTEGGEAVPLVHIYGPKIKYERGAAVAFNLRDRNRGLINPEVVQKLAEKE 743
Query: 777 GISLGIG 783
GISLGIG
Sbjct: 744 GISLGIG 750
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802248|ref|XP_002869008.1| hypothetical protein ARALYDRAFT_912653 [Arabidopsis lyrata subsp. lyrata] gi|297314844|gb|EFH45267.1| hypothetical protein ARALYDRAFT_912653 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/941 (61%), Positives = 673/941 (71%), Gaps = 131/941 (13%)
Query: 1 MHLSLWKPISHCAALILDKKSSR---RKDGSDSTVDIKRNPSILRKLEEHRLREALEEAS 57
MH SLWK I HCA+LILDK SR R+DGSDS++++K+ +++RKL E +LREALEEAS
Sbjct: 1 MHFSLWKQIHHCASLILDKSKSRGGRRRDGSDSSLNVKKKAALIRKLYEDKLREALEEAS 60
Query: 58 EDGSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLS 117
E GSLFKSQDI+ + N D SLGRSRSLARLHAQREFLRATALAAER+ E+E+SIP+L
Sbjct: 61 EYGSLFKSQDIDQD---NGDGSLGRSRSLARLHAQREFLRATALAAERIIESEDSIPELR 117
Query: 118 EAFSKFLTMYPKYQSSDKIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESST 174
EA +KFL MYPKYQ+S+KIDQLR+NEY HLS KVCLDYCGFGLFSY+QTLHYW++ T
Sbjct: 118 EALTKFLRMYPKYQASEKIDQLRSNEYSHLSSSASKVCLDYCGFGLFSYVQTLHYWDTCT 177
Query: 175 FSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE 234
FSLSEITANLSNHALYGGAE GTVEHDIKTRIMD+LNIPENEYGLVFTVSRGSAF+LLAE
Sbjct: 178 FSLSEITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFRLLAE 237
Query: 235 SYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKK 294
SYPF +NK+LLTMFD+ESQSVNWMAQ+A+EKGAK Y+AWFKWPTLKLCSTDL+K++S KK
Sbjct: 238 SYPFQSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKK 297
Query: 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354
R+KKDSA GLFVFP QSRVTG KYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR
Sbjct: 298 RKKKDSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 357
Query: 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDG 414
P+FIITSFYRVFG DPTGFGCLLIKKSVMGSLQ+QSG+TGSG+VKITP+YPLYLSDSVDG
Sbjct: 358 PEFIITSFYRVFGHDPTGFGCLLIKKSVMGSLQSQSGKTGSGIVKITPQYPLYLSDSVDG 417
Query: 415 LDRLAGVED---DESSD---------------------NSFWIDLGQSPLGSD------- 443
LD L G ED D++ + + F +L + + SD
Sbjct: 418 LDGLVGFEDHNEDKAKEAHRPGTQMPAFSGAYTSAQVRDVFETELLEDNISSDRDGTTST 477
Query: 444 ---------NAGQLNKQKI----ASPLPPLWFS------GKKNHKRL-SP-KPTW----- 477
+ G+L K + S W G H ++ SP P W
Sbjct: 478 TIFEETESVSVGELMKSPVFSEDESSDNSFWIDLGQSPLGSDQHNKIASPLPPIWLTNKR 537
Query: 478 --KIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFSGMTHNFRN 535
K SP K + D VLSFDAAV+SV++ P RN
Sbjct: 538 NQKQRQSPKLIPKSYSSPLYDGSDVLSFDAAVMSVTE--HGTNSTPS-----------RN 584
Query: 536 NNKSSGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGL-TSEICS 594
SS V+EIQEE +C H LANGL +S I S
Sbjct: 585 RRSSSNHLHVQEIQEE------------------NC---------GHSLANGLKSSNISS 617
Query: 595 EVKESAIRRETEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHT 654
E+K+SAIRRETEGEFRLLG R+G R R G+EDEHPS+GRRVSF+M ER+SH+
Sbjct: 618 EIKDSAIRRETEGEFRLLGGRDGGR---SRLLGVEDEHPSKGRRVSFNM-----ERVSHS 669
Query: 655 M-ETGEVSVTSFDDEDY--SSDGEYGDGQ----DWNRR--EPEIICRHLDHINMLGLNKT 705
+ E GE S+ S DEDY +SD E GD + +W R+ E EI+CRH+DH+NMLGLN+T
Sbjct: 670 IVEPGEASLASIYDEDYNNTSDVENGDDEGADDEWERKDTETEIVCRHIDHVNMLGLNRT 729
Query: 706 TCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLIN 765
T RLRFLINWLV SLLQL+ +S G + +LV IYGPKIKYERGAAVAFNVRDK +G ++
Sbjct: 730 TTRLRFLINWLVISLLQLQVPESGGRN-MNLVQIYGPKIKYERGAAVAFNVRDKSKGFVS 788
Query: 766 PEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIR 825
PE+VQ+L E+EGISLGIG LSHIRI+D + + + +D+ L + N GK GFIR
Sbjct: 789 PEIVQRLGEREGISLGIGILSHIRIVDDKPRNHRARTKEDSAL--HLQN--EAGKNGFIR 844
Query: 826 VEVVTASLGFLTNFEDVYKLWAFVAKFLNPAFVREGALPTV 866
EVVTASL FLTNFEDVYKLWAFVAKFL P F REG+LPTV
Sbjct: 845 FEVVTASLSFLTNFEDVYKLWAFVAKFLTPGFSREGSLPTV 885
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797679|ref|XP_002866724.1| hypothetical protein ARALYDRAFT_496904 [Arabidopsis lyrata subsp. lyrata] gi|297312559|gb|EFH42983.1| hypothetical protein ARALYDRAFT_496904 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/949 (59%), Positives = 670/949 (70%), Gaps = 155/949 (16%)
Query: 1 MHLSLWKPISHCAA-LILDKKSSRRKDGSDSTVDIKRNPSIL-RKLEEHRLREALEEASE 58
MH+SLWKPI HCAA L+LDKKSS + RN + RKL E +LREALE+ASE
Sbjct: 1 MHISLWKPIYHCAAALVLDKKSS-------GSSSSSRNRDVTQRKLHESKLREALEQASE 53
Query: 59 DGSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSE 118
DG L KSQD+E E +QD+SLGRSRSLARL+AQREFLRAT+LAA+R FE+EE++P+L E
Sbjct: 54 DGLLVKSQDMEEED-ESQDQSLGRSRSLARLNAQREFLRATSLAAQRAFESEETLPELEE 112
Query: 119 AFSKFLTMYPKYQSSDKIDQLRANEYLHLS-PKVCLDYCGFGLFSYIQTLHYWESSTFSL 177
A FLTMYPKYQSS+K+D+LR +EY HLS PKVCLDYCGFGLFSY+QT+HYW++ TFSL
Sbjct: 113 ALDMFLTMYPKYQSSEKVDELRNDEYFHLSLPKVCLDYCGFGLFSYLQTVHYWDTCTFSL 172
Query: 178 SEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP 237
SEI+ANLSNHA+YGGAEKG++EHDIK RIMD+LNIPENEYGLVFTVSRGSAFKLLAESYP
Sbjct: 173 SEISANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYP 232
Query: 238 FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297
FHTNKKLLTMFD+ESQSV+WM Q AKEKGAKV SAWFKWPTL+LCS DL+K+I SKK+RK
Sbjct: 233 FHTNKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRK 292
Query: 298 KDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357
KDSA GLFVFPVQSRVTG+KYSYQWMALAQQN+WHVLLDAG+LGPKDMDSLGLSLFRPDF
Sbjct: 293 KDSATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDF 352
Query: 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDR 417
IITSFYRVFG+DPTGFGCLLIKKSV+ LQ+QSG+T SG+VKITPEYPLYLSDS+DGL+
Sbjct: 353 IITSFYRVFGYDPTGFGCLLIKKSVISCLQSQSGKTSSGIVKITPEYPLYLSDSMDGLEG 412
Query: 418 LAGVEDDESSDNSFWIDLG-QSP----------------------LGS--DNAGQLNKQK 452
L G++D++ + N LG Q P +GS DN G + ++
Sbjct: 413 LTGIQDNDIAINGDNKALGTQLPAFSGAYTSAQVQDVFETDMDHEIGSDRDNTGTVFEET 472
Query: 453 --------IASPL--------PPLWF-----------SGKKN-----------HK-RLSP 473
I SP+ LW +G +N HK R+SP
Sbjct: 473 ESISVGELIKSPVFSEDESSDSSLWIDLGQSPADSDNAGPRNKQKSPLLVPKNHKRRISP 532
Query: 474 KPTWKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFS----GM 529
KP K AN G++ HVLSFDAAVLSVS ++ EV EEE+
Sbjct: 533 KPASK-----------ANNGSNGGRHVLSFDAAVLSVSHEVG--DEVSEEEKTEMNQIDT 579
Query: 530 THNFRNNNKSSGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLT 589
+H R N S+ +N+ NGS
Sbjct: 580 SHRLRVNEIEE-----------EEEEGGSSKLTANANGNGS------------------- 609
Query: 590 SEICSEVKESAIRRETEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKE 649
S +KESAIRRETEGEFRLLGRRE S+Y GGR EDEHPS+ RRVSF
Sbjct: 610 ---SSGIKESAIRRETEGEFRLLGRREKSQYNGGRLLVNEDEHPSK-RRVSF-------- 657
Query: 650 RLSHTMETGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDHINMLGLNKTTCRL 709
+++ GE SV S DED DG G D ++REPEI+CRH+DH+NMLGLNKTT RL
Sbjct: 658 ---RSVDHGEASVISLGDEDEEEDGSNGVEWDDDQREPEIVCRHIDHVNMLGLNKTTSRL 714
Query: 710 RFLINWLVTSLLQLRF--SDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPE 767
R+LINWLVTSLLQLR SDSDG+ + +LV IYGPKIKYERG++VAFNVRD + G+++PE
Sbjct: 715 RYLINWLVTSLLQLRLPKSDSDGDHK-NLVQIYGPKIKYERGSSVAFNVRDLKSGMVHPE 773
Query: 768 VVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMD-NGRHDGKGGFIRV 826
+VQKLAE+EGISLGIG+LSHI+I+D+ + D++ +P+D GR++G IRV
Sbjct: 774 IVQKLAEREGISLGIGYLSHIKIIDNRSE--------DSSSWKPVDREGRNNGS---IRV 822
Query: 827 EVVTASLGFLTNFEDVYKLWAFVAKFLNPAFVREGALPTV---EESSET 872
EVVTASLGFLTNFEDVY+LW FVAKFL+P F ++G LPTV ++SSET
Sbjct: 823 EVVTASLGFLTNFEDVYRLWNFVAKFLSPGFAKQGTLPTVIEEDDSSET 871
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240136|ref|NP_201496.1| catalytic/ pyridoxal phosphate binding protein [Arabidopsis thaliana] gi|9758540|dbj|BAB08934.1| unnamed protein product [Arabidopsis thaliana] gi|332010900|gb|AED98283.1| catalytic/ pyridoxal phosphate binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/933 (59%), Positives = 655/933 (70%), Gaps = 124/933 (13%)
Query: 1 MHLSLWKPISHCAA-LILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASED 59
MH+SLWKPI HCAA L+LDKKSS S D+ + RKL E +LREALE+ASED
Sbjct: 1 MHISLWKPIYHCAAALVLDKKSSGSSSSSSRNRDVTQ-----RKLHESKLREALEQASED 55
Query: 60 GSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEA 119
G L KSQD+E E +QD+ LGRSRSLARL+AQREFLRAT+LAA+R FE+EE++P+L EA
Sbjct: 56 GLLVKSQDMEEED-ESQDQILGRSRSLARLNAQREFLRATSLAAQRAFESEETLPELEEA 114
Query: 120 FSKFLTMYPKYQSSDKIDQLRANEYLHLS-PKVCLDYCGFGLFSYIQTLHYWESSTFSLS 178
+ FLTMYPKYQSS+K+D+LR +EY HLS PKVCLDYCGFGLFSY+QT+HYW++ TFSLS
Sbjct: 115 LTIFLTMYPKYQSSEKVDELRNDEYFHLSLPKVCLDYCGFGLFSYLQTVHYWDTCTFSLS 174
Query: 179 EITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPF 238
EI+ANLSNHA+YGGAEKG++EHDIK RIMD+LNIPENEYGLVFTVSRGSAFKLLAESYPF
Sbjct: 175 EISANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPF 234
Query: 239 HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298
HTNKKLLTMFD+ESQSV+WM Q AKEKGAKV SAWFKWPTL+LCS DL+K+I SKK+RKK
Sbjct: 235 HTNKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRKK 294
Query: 299 DSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFI 358
DSA GLFVFPVQSRVTG+KYSYQWMALAQQN+WHVLLDAG+LGPKDMDSLGLSLFRPDFI
Sbjct: 295 DSATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFI 354
Query: 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRL 418
ITSFYRVFG+DPTGFGCLLIKKSV+ LQ+QSG+T SG+VKITPEYPLYLSDS+DGL+ L
Sbjct: 355 ITSFYRVFGYDPTGFGCLLIKKSVISCLQSQSGKTSSGIVKITPEYPLYLSDSMDGLEGL 414
Query: 419 AGVEDDESSDNSFWIDLG-QSP----------------------LGSD------------ 443
G++D+ + N LG Q P +GSD
Sbjct: 415 TGIQDNGIAINGDNKALGTQLPAFSGAYTSAQVQDVFETDMDHEIGSDRDNTSAVFEEAE 474
Query: 444 --NAGQLNKQKI----ASPLPPLWF-----------SGKKNHKR--LSPKPTWKIYGSPI 484
+ G+L K + S LW +G N ++ L + K SP
Sbjct: 475 SISVGELIKSPVFSEDESSDSSLWIDLGQSPADSDNAGHLNKQKSPLLVRKNHKRRSSPK 534
Query: 485 FDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFSGMTHNFRNNNKSSGCPR 544
K N G++ HVLSFDAAVLSVS H
Sbjct: 535 PASKANN-GSNGGRHVLSFDAAVLSVS-------------------HEVGEEVIEEENSE 574
Query: 545 VEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLTSEICSEVKESAIRRE 604
+ +I + V SS+ ANG +S I K+SAIRRE
Sbjct: 575 MNQIDTSRRL----------RVTEIEEEEEEGGSSKLTAHANGSSSGI----KDSAIRRE 620
Query: 605 TEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHTMETGEVSVTS 664
TEGEFRLLGRRE S+Y GGR EDEHPS+ RRVSF +++ GE SV S
Sbjct: 621 TEGEFRLLGRREKSQYNGGRLLVNEDEHPSK-RRVSF-----------RSVDHGEASVIS 668
Query: 665 FDDEDYSSDGEYGDGQDWNRREPEIICRHLDHINMLGLNKTTCRLRFLINWLVTSLLQLR 724
DED DG G D ++REPEI+CRH+DH+NMLGLNKTT RLR+LINWLVTSLLQLR
Sbjct: 669 LGDEDEEEDGSNGVEWDDDQREPEIVCRHIDHVNMLGLNKTTSRLRYLINWLVTSLLQLR 728
Query: 725 F--SDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI 782
SDSDGE + +LV IYGPKIKYERG++VAFN+RD + G+++PE+VQKLAE+EGISLGI
Sbjct: 729 LPRSDSDGEHK-NLVQIYGPKIKYERGSSVAFNIRDLKSGMVHPEIVQKLAEREGISLGI 787
Query: 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDV 842
G+LSHI+I+D+ + D++ +P+D R GFIRVEVVTASLGFLTNFEDV
Sbjct: 788 GYLSHIKIIDNRSE--------DSSSWKPVD--REGRNNGFIRVEVVTASLGFLTNFEDV 837
Query: 843 YKLWAFVAKFLNPAFVREGALPTV---EESSET 872
Y+LW FVAKFL+P F ++G LPTV ++SSET
Sbjct: 838 YRLWNFVAKFLSPGFAKQGTLPTVIEEDDSSET 870
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125537235|gb|EAY83723.1| hypothetical protein OsI_38943 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/895 (54%), Positives = 593/895 (66%), Gaps = 92/895 (10%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNP-SILRKLEEHRLREALEEASED 59
MHLSLWKP+SHCAA++L K RR G S +P S LR+L R+AL+ ASED
Sbjct: 1 MHLSLWKPLSHCAAVLLAKNHRRRGGGGGSNGHRGDDPASFLRQL-----RDALDAASED 55
Query: 60 GSLFKS-QDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAER-VFETEESIPDLS 117
GSL + A+ D ++ RSRSLARL AQR+FLRATALAA F + IP L
Sbjct: 56 GSLCPPPDAAGAGADADADAAVSRSRSLARLRAQRDFLRATALAAAGGPFRSPSDIPLLP 115
Query: 118 EAFSKFLTMYPKYQSSDKIDQLRANEYLHL---------SPKVCLDYCGFGLFSYIQTLH 168
A + FL MYP Y ++ +D+LR Y HL +VCLDYCGFGLF
Sbjct: 116 AAIAGFLAMYPDYATTSDVDRLRVEHYSHLDAAAPGGGAGGRVCLDYCGFGLFD-----S 170
Query: 169 YWESST--FSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226
W+SS+ F+LSE+ ANLSNHALYGGAE GTVE+DIK RI+++LN+P +EY LVFTVSRG
Sbjct: 171 GWDSSSSSFTLSELNANLSNHALYGGAEAGTVENDIKERILEYLNVPASEYALVFTVSRG 230
Query: 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDL 286
SAF+LLAE YPF TN++LLTMFD+ESQSV+WMAQSA+ KGAK +AWF+WPTLKLCST+L
Sbjct: 231 SAFRLLAECYPFETNRRLLTMFDHESQSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTEL 290
Query: 287 RKQISSKKR-RKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDM 345
RK+I K+R R++DSA GLFVFP QSRVTGAKYSYQWMALAQQN WHV+LDAG+LGPKDM
Sbjct: 291 RKEIVGKRRGRRRDSAVGLFVFPAQSRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKDM 350
Query: 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGS----GMVKIT 401
DSLGLSLFRPDFIITSFYR+ F + V + ++ G+ S G I
Sbjct: 351 DSLGLSLFRPDFIITSFYRL-----PAFSGVYTSAQVREAFESDPGRDSSSDRDGASTIF 405
Query: 402 PEYPLYLSDSVDGLDRLAGVEDDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPPLW 461
E S SV + R +D SS+NSFW+D+GQSPLGS+ G K K+ SPLP W
Sbjct: 406 EETE---SISVGEVMRSPAFSEDCSSENSFWVDVGQSPLGSEKGGHFKKGKLGSPLPSSW 462
Query: 462 FSGKKNHKRLSPKPTWKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVP 521
F+G+K++KR+SP T +I SP++D + V+SFDAAVLSVS D D +KE P
Sbjct: 463 FAGRKSNKRMSPNLTSRISRSPLYDGQ-----------VISFDAAVLSVSHDADCLKEDP 511
Query: 522 EEEQF-SGMTHNFRNNNKSSGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQ 580
EEE + +G ++FR +V EIQEEP + + A MNG
Sbjct: 512 EEEIYENGRRNHFR---------QVSEIQEEPEVEEVVCQHA----MNGG---------- 548
Query: 581 HHGLANGLTSEICSEVKESAIRRETEGEFRLLGRREG-SRYIGGRFFGLE--DEHPSRGR 637
+ KESAIRRETEGEFRLLG R+G SR+ GGR FG+E D S GR
Sbjct: 549 -------------GDHKESAIRRETEGEFRLLGGRDGNSRFAGGRLFGVEEIDAGLSMGR 595
Query: 638 RVSFSMEDN-RKERLSHTMETGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDH 696
RVSFS E N +RL + E S +F D+D Y D QDW RREPEIICRH+DH
Sbjct: 596 RVSFSTEANIIADRLHRASDAAEASGYAFRDDDGCVSDGYDDAQDWGRREPEIICRHIDH 655
Query: 697 INMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNV 756
++M+GLN+TT RLR+LINWLVTSLLQLR S G LVHIYGPKIKYERGAAVAFNV
Sbjct: 656 VDMMGLNRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPKIKYERGAAVAFNV 715
Query: 757 RDKERGLINPEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGR 816
+ + +N EVVQK+AEK GISLGIGFLSHI++ + +Q G+ + + + + NGR
Sbjct: 716 KQSDGTFVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDIPEASFYK---NGR 772
Query: 817 HDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNPAFVREGALPTVEESSE 871
D K IRVEVVTASLGFLTNFEDVY +WAFVAKFL+P+F+ L + SE
Sbjct: 773 KDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESERLTIAADHSE 827
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094503|ref|XP_002310171.1| predicted protein [Populus trichocarpa] gi|222853074|gb|EEE90621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/430 (90%), Positives = 413/430 (96%), Gaps = 1/430 (0%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MHLSLWKPISHCAAL+LDKKS RRKDGS+S+++IKRN SILRKL+EH+LREALEEASEDG
Sbjct: 1 MHLSLWKPISHCAALLLDKKS-RRKDGSESSLEIKRNSSILRKLQEHKLREALEEASEDG 59
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SL KSQD+ES+ LANQDESLGRSRSLARLHAQREFLRATALAAER+FE E+SIPDL EAF
Sbjct: 60 SLVKSQDMESDTLANQDESLGRSRSLARLHAQREFLRATALAAERIFENEDSIPDLLEAF 119
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEI 180
SKFLTMYPKYQSS+K+DQLR +EY HLSPKVCLDYCGFGLFSY+Q+LHYWESSTFSLSEI
Sbjct: 120 SKFLTMYPKYQSSEKVDQLRLDEYAHLSPKVCLDYCGFGLFSYLQSLHYWESSTFSLSEI 179
Query: 181 TANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 240
TANLSNHALYGGAEKGTVEHDIKTRIMD+LNIPE+EYGLVFTVSRGSAFKLLAESYPFHT
Sbjct: 180 TANLSNHALYGGAEKGTVEHDIKTRIMDYLNIPEHEYGLVFTVSRGSAFKLLAESYPFHT 239
Query: 241 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300
NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQI +KKRRKKDS
Sbjct: 240 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQILNKKRRKKDS 299
Query: 301 AAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
A GLFVFPVQSRVTGAKYSYQWMALAQQN WHVLLDAGSLGPKDMDSLGLSLFRPDFIIT
Sbjct: 300 AVGLFVFPVQSRVTGAKYSYQWMALAQQNRWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 359
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAG 420
SFY+VFG DPTGFGCLLIKKSVMGSLQNQSG TGSGMVKITPEYP+YLSDSVDGLD L G
Sbjct: 360 SFYKVFGHDPTGFGCLLIKKSVMGSLQNQSGSTGSGMVKITPEYPMYLSDSVDGLDGLVG 419
Query: 421 VEDDESSDNS 430
VEDDE + N+
Sbjct: 420 VEDDEVAGNA 429
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562713|ref|XP_002522362.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223538440|gb|EEF40046.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/425 (91%), Positives = 412/425 (96%), Gaps = 1/425 (0%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MHLSLWKPISHCAALILDKKS R+KDGS+ ++IK+NPSILRKL+EH+LREALEEASEDG
Sbjct: 1 MHLSLWKPISHCAALILDKKS-RKKDGSEPNLEIKKNPSILRKLQEHKLREALEEASEDG 59
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SLFKSQD+ESE L NQDESLGRSRSLARLHAQREFLRATALAAER+FE+E+SIPDL EAF
Sbjct: 60 SLFKSQDMESESLGNQDESLGRSRSLARLHAQREFLRATALAAERIFESEDSIPDLHEAF 119
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEI 180
SKFLTMYPKYQSS++IDQLR++EY HL PKVCLDYCGFGLFSY+QTLHYWESSTFSLSEI
Sbjct: 120 SKFLTMYPKYQSSERIDQLRSDEYAHLCPKVCLDYCGFGLFSYLQTLHYWESSTFSLSEI 179
Query: 181 TANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 240
TANLSNHALYGGAEKGTVE+DIKTRIMD+LNIPE+EYGLVFTVSRGSAFKLLAESYPFHT
Sbjct: 180 TANLSNHALYGGAEKGTVEYDIKTRIMDYLNIPEHEYGLVFTVSRGSAFKLLAESYPFHT 239
Query: 241 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300
NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS
Sbjct: 240 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 299
Query: 301 AAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
A GLFVFPVQSRVTGAKYSYQWMALAQQN+WHVLLDAGSLGPKDMDSLGLSLFRPDFIIT
Sbjct: 300 AVGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 359
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAG 420
SFYRVFG+DPTGFGCLLIKKSVMG+LQNQSG TGSGMVKITPEYP+YLSDSVD LDRL G
Sbjct: 360 SFYRVFGYDPTGFGCLLIKKSVMGNLQNQSGSTGSGMVKITPEYPMYLSDSVDDLDRLVG 419
Query: 421 VEDDE 425
+DD+
Sbjct: 420 NDDDD 424
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084235|ref|XP_002307239.1| predicted protein [Populus trichocarpa] gi|222856688|gb|EEE94235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/430 (89%), Positives = 413/430 (96%), Gaps = 1/430 (0%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MHLSLWKPIS CAAL+L KKS RRKDGS+S++DIKR+ SILRKL+EH+LREALEEASEDG
Sbjct: 1 MHLSLWKPISQCAALLLYKKS-RRKDGSESSLDIKRDSSILRKLQEHKLREALEEASEDG 59
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
L KSQD+ESE LANQDESLGRSRSLARLHAQREFLRATALAAER+FE EESIPDL EAF
Sbjct: 60 LLLKSQDMESETLANQDESLGRSRSLARLHAQREFLRATALAAERIFENEESIPDLHEAF 119
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEI 180
SKFL MYPKYQSS+K+DQLR++EY HLSPKVCLDYCGFGLFSY+Q+LHYW+SSTFSLSEI
Sbjct: 120 SKFLMMYPKYQSSEKVDQLRSDEYAHLSPKVCLDYCGFGLFSYLQSLHYWDSSTFSLSEI 179
Query: 181 TANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 240
TANLSNHALYGGAEKGTVE+DIKTRIMD+LNIPE+EYGLVFTVSRGSAFKLLAESYPFHT
Sbjct: 180 TANLSNHALYGGAEKGTVEYDIKTRIMDYLNIPEHEYGLVFTVSRGSAFKLLAESYPFHT 239
Query: 241 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300
NKKLLTMFDYESQSVNWMAQSAKEKGAKVYS+WFKWPTLKLCSTDLRKQIS+KKRRKKDS
Sbjct: 240 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSSWFKWPTLKLCSTDLRKQISNKKRRKKDS 299
Query: 301 AAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
A GLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT
Sbjct: 300 AVGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 359
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAG 420
SFYRVFG+DPTGFGCLLIKKSVMGSLQNQSG TGSGMVKITPE+P+YLSDSVDGLD L G
Sbjct: 360 SFYRVFGYDPTGFGCLLIKKSVMGSLQNQSGSTGSGMVKITPEFPMYLSDSVDGLDGLVG 419
Query: 421 VEDDESSDNS 430
+EDDE + N+
Sbjct: 420 IEDDEVAGNA 429
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810113|emb|CAN75833.1| hypothetical protein VITISV_039637 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/465 (82%), Positives = 417/465 (89%), Gaps = 19/465 (4%)
Query: 1 MHLSLWKPISHCAALILDKKSSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
MHLSLWKPISHCA+LI+DKKS RRKDGSDSTV+ KRNPSILRKL+E++LREALEEASEDG
Sbjct: 344 MHLSLWKPISHCASLIMDKKS-RRKDGSDSTVESKRNPSILRKLQENKLREALEEASEDG 402
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SL KSQD++ E ANQDE LGRSRSLARLH QREFLRATALAAER FE+EESIPDL EAF
Sbjct: 403 SLVKSQDMDPESPANQDEGLGRSRSLARLHNQREFLRATALAAERTFESEESIPDLHEAF 462
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEI 180
+KFLTMYPKYQSS+KID LRA+EY HL+PKVCLDYCGFGLFSYIQT+HYWESSTF+LSEI
Sbjct: 463 TKFLTMYPKYQSSEKIDHLRADEYGHLAPKVCLDYCGFGLFSYIQTMHYWESSTFNLSEI 522
Query: 181 TANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 240
TANLSNHALYGGAEKGT+EHDIKTRIMD+LNIPENEYGLVFTVSRGSAFKLLAESYPFHT
Sbjct: 523 TANLSNHALYGGAEKGTMEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 582
Query: 241 NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300
NK+LLTMFD+ESQSV+WMAQ+AKEKGAKV+SAWFKWPTLKLCSTDLRK+IS KK+RKKDS
Sbjct: 583 NKRLLTMFDHESQSVSWMAQAAKEKGAKVHSAWFKWPTLKLCSTDLRKRISHKKKRKKDS 642
Query: 301 AAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360
AAGLFVFPVQSRVTGAKYSYQWMALAQQN+WHVLLDAGSLGPKDMDSLGLSLFRPDFIIT
Sbjct: 643 AAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 702
Query: 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAG 420
SFYRVFG+DPTGFGCLLIKKSVMG+L NQ G GSGMVKITP +P YLSDS+DG D L G
Sbjct: 703 SFYRVFGYDPTGFGCLLIKKSVMGNLHNQPGSAGSGMVKITPVFPQYLSDSMDGFDGLGG 762
Query: 421 VEDDESSDNSFWIDLGQSPLGSDNAGQLNKQ-KIASPLPPLWFSG 464
+EDDE N G+L + + SPLPP FSG
Sbjct: 763 MEDDEVGGN----------------GELTSETRKESPLPPA-FSG 790
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 872 | ||||||
| TAIR|locus:2046837 | 895 | AT2G23520 [Arabidopsis thalian | 0.488 | 0.475 | 0.727 | 2.5e-292 | |
| TAIR|locus:2115179 | 896 | AT4G37100 [Arabidopsis thalian | 0.481 | 0.468 | 0.735 | 1.3e-282 | |
| TAIR|locus:2158088 | 870 | AT5G66950 [Arabidopsis thalian | 0.479 | 0.480 | 0.708 | 6.5e-264 | |
| TAIR|locus:2166523 | 570 | AT5G51920 [Arabidopsis thalian | 0.360 | 0.550 | 0.441 | 4.1e-102 | |
| TAIR|locus:2127253 | 559 | AT4G22980 "AT4G22980" [Arabido | 0.394 | 0.615 | 0.371 | 4.5e-77 | |
| UNIPROTKB|F1SAI5 | 889 | LOC100621611 "Uncharacterized | 0.081 | 0.079 | 0.376 | 4e-13 | |
| UNIPROTKB|F1PDQ7 | 879 | MOCOS "Uncharacterized protein | 0.087 | 0.086 | 0.375 | 6.6e-13 | |
| UNIPROTKB|Q96EN8 | 888 | MOCOS "Molybdenum cofactor sul | 0.082 | 0.081 | 0.392 | 7.1e-13 | |
| UNIPROTKB|G3N1I0 | 882 | MOCOS "Molybdenum cofactor sul | 0.091 | 0.090 | 0.351 | 4.1e-12 | |
| UNIPROTKB|Q9N0E7 | 882 | MOCOS "Molybdenum cofactor sul | 0.091 | 0.090 | 0.351 | 4.1e-12 |
| TAIR|locus:2046837 AT2G23520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1647 (584.8 bits), Expect = 2.5e-292, Sum P(3) = 2.5e-292
Identities = 313/430 (72%), Positives = 354/430 (82%)
Query: 1 MHLSLWKPISHCAALILXXXXXXXXXXXXXTVDIKRNPSIXXXXXXXXXXXXXXXXXXDG 60
MH LWK I HCA LIL +D++R S+ +G
Sbjct: 1 MHFPLWKQIHHCATLILDKSKSRRRDGSDSPIDVRRKASMLRKLYEDKLRDALEEASENG 60
Query: 61 SLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEAF 120
SLFKSQD+E+E NQDESLGRSRSLARLHAQREFLRATALAAER FE+E+ IP+L EAF
Sbjct: 61 SLFKSQDVENE---NQDESLGRSRSLARLHAQREFLRATALAAERAFESEDDIPELLEAF 117
Query: 121 SKFLTMYPKYQSSDKIDQLRANEYLHL-SPKVCLDYCGFGLFSYIQTLHYWESSTFSLSE 179
+KFLTMYPK+++S+K+DQLR++EY HL KVCLDYCGFGLFSY+QTLHYW+S TFSLSE
Sbjct: 118 NKFLTMYPKFETSEKVDQLRSDEYGHLLDSKVCLDYCGFGLFSYVQTLHYWDSCTFSLSE 177
Query: 180 ITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFH 239
ITANLSNHALYGGAE GTVEHD+KTRIMD+LNIPE+EYGLVFT SRGSAF+LLAESYPFH
Sbjct: 178 ITANLSNHALYGGAEIGTVEHDLKTRIMDYLNIPESEYGLVFTGSRGSAFRLLAESYPFH 237
Query: 240 TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLXXXXXXXXXXXXX 299
TNK+LLTMFD+ESQSVNWMAQ+A+EKGAK Y+AWFKWPTLKLCSTDL
Sbjct: 238 TNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSHKKRKKKD 297
Query: 300 XAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFII 359
A GLFVFP QSRVTG+KYSYQWMALAQQN+WHVLLDAGSLGPKDMDSLGLSLFRP+FII
Sbjct: 298 SAVGLFVFPAQSRVTGSKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPEFII 357
Query: 360 TSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLA 419
TSFY+VFG DPTGFGCLLIKKSVMG+LQ+QSG+TGSG+VKITP+YPLYLSDS+DGLD L
Sbjct: 358 TSFYKVFGHDPTGFGCLLIKKSVMGNLQSQSGKTGSGIVKITPQYPLYLSDSIDGLDGLV 417
Query: 420 GVEDDESSDN 429
G+ED + N
Sbjct: 418 GLEDHDIGTN 427
|
|
| TAIR|locus:2115179 AT4G37100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1630 (578.8 bits), Expect = 1.3e-282, Sum P(3) = 1.3e-282
Identities = 315/428 (73%), Positives = 351/428 (82%)
Query: 1 MHLSLWKPISHCAALILXXXXXXXXXX--XXXTVDIKRNPSIXXXXXXXXXXXXXXXXXX 58
MH SLWK I HCA+LIL ++++K+ ++
Sbjct: 1 MHFSLWKQIHHCASLILDKSKSSRRRRDGSDSSLNVKKKAALIRKLYEDKLREALEEASE 60
Query: 59 DGSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSE 118
+GSLFKSQDI+ + N D SLGRSRSLARLHAQREFLRATALAAER+ E+E+SIP+L E
Sbjct: 61 NGSLFKSQDIDQD---NGDGSLGRSRSLARLHAQREFLRATALAAERIIESEDSIPELRE 117
Query: 119 AFSKFLTMYPKYQSSDKIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTF 175
A +KFL+MYPKYQ+S+KIDQLR++EY HLS KVCLDYCGFGLFSY+QTLHYW++ TF
Sbjct: 118 ALTKFLSMYPKYQASEKIDQLRSDEYSHLSSSASKVCLDYCGFGLFSYVQTLHYWDTCTF 177
Query: 176 SLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES 235
SLSEITANLSNHALYGGAE GTVEHDIKTRIMD+LNIPENEYGLVFTVSRGSAF+LLAES
Sbjct: 178 SLSEITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFRLLAES 237
Query: 236 YPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLXXXXXXXXX 295
YPF +NK+LLTMFD+ESQSVNWMAQ+A+EKGAK Y+AWFKWPTLKLCSTDL
Sbjct: 238 YPFQSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKKR 297
Query: 296 XXXXXAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355
A GLFVFP QSRVTG KYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP
Sbjct: 298 KKKDSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 357
Query: 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGL 415
+FIITSFYRVFG DPTGFGCLLIKKSVMGSLQ+QSG+TGSG+VKITPEYPLYLSDSVDGL
Sbjct: 358 EFIITSFYRVFGHDPTGFGCLLIKKSVMGSLQSQSGKTGSGIVKITPEYPLYLSDSVDGL 417
Query: 416 DRLAGVED 423
D L G ED
Sbjct: 418 DGLVGFED 425
|
|
| TAIR|locus:2158088 AT5G66950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1574 (559.1 bits), Expect = 6.5e-264, Sum P(3) = 6.5e-264
Identities = 302/426 (70%), Positives = 346/426 (81%)
Query: 1 MHLSLWKPISHCAA-LILXXXXXXXXXXXXXTVDIKRNPSIXXXXXXXXXXXXXXXXXXD 59
MH+SLWKPI HCAA L+L D+ + D
Sbjct: 1 MHISLWKPIYHCAAALVLDKKSSGSSSSSSRNRDVTQRK-----LHESKLREALEQASED 55
Query: 60 GSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERVFETEESIPDLSEA 119
G L KSQD+E E +QD+ LGRSRSLARL+AQREFLRAT+LAA+R FE+EE++P+L EA
Sbjct: 56 GLLVKSQDMEEED-ESQDQILGRSRSLARLNAQREFLRATSLAAQRAFESEETLPELEEA 114
Query: 120 FSKFLTMYPKYQSSDKIDQLRANEYLHLS-PKVCLDYCGFGLFSYIQTLHYWESSTFSLS 178
+ FLTMYPKYQSS+K+D+LR +EY HLS PKVCLDYCGFGLFSY+QT+HYW++ TFSLS
Sbjct: 115 LTIFLTMYPKYQSSEKVDELRNDEYFHLSLPKVCLDYCGFGLFSYLQTVHYWDTCTFSLS 174
Query: 179 EITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPF 238
EI+ANLSNHA+YGGAEKG++EHDIK RIMD+LNIPENEYGLVFTVSRGSAFKLLAESYPF
Sbjct: 175 EISANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPF 234
Query: 239 HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLXXXXXXXXXXXX 298
HTNKKLLTMFD+ESQSV+WM Q AKEKGAKV SAWFKWPTL+LCS DL
Sbjct: 235 HTNKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRKK 294
Query: 299 XXAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFI 358
A GLFVFPVQSRVTG+KYSYQWMALAQQN+WHVLLDAG+LGPKDMDSLGLSLFRPDFI
Sbjct: 295 DSATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFI 354
Query: 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRL 418
ITSFYRVFG+DPTGFGCLLIKKSV+ LQ+QSG+T SG+VKITPEYPLYLSDS+DGL+ L
Sbjct: 355 ITSFYRVFGYDPTGFGCLLIKKSVISCLQSQSGKTSSGIVKITPEYPLYLSDSMDGLEGL 414
Query: 419 AGVEDD 424
G++D+
Sbjct: 415 TGIQDN 420
|
|
| TAIR|locus:2166523 AT5G51920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 147/333 (44%), Positives = 211/333 (63%)
Query: 92 QREFLRATA--LAAERVFETEESIPDLSEAFSKFLTMYPKYQSSDKIDQLRANEYLHL-- 147
+R F + T + + F S+P E+FS F+ YP Y + KID+LR++ Y HL
Sbjct: 46 RRNFAQTTVSTIFPDTEFTDPNSLPSHQESFSDFIQAYPNYSDTYKIDRLRSDHYFHLGL 105
Query: 148 SPKVCLDYCGFGLFSYIQTLHY-----------WESSTFSLSEITANLSNHALYGGAEKG 196
S CLDY G GL+SY Q L+Y ES FS+S NL L G ++
Sbjct: 106 SHYTCLDYIGIGLYSYSQLLNYDPSTYQISSSLSESPFFSVSPKIGNLKEKLLNDGGQET 165
Query: 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN 256
E+ +K RIM L I E +Y +VFT +R SAF+L+AESYPF++ +KLLT++DYES++V+
Sbjct: 166 EFEYSMKRRIMGFLKISEEDYSMVFTANRTSAFRLVAESYPFNSKRKLLTVYDYESEAVS 225
Query: 257 WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLXXXXXXXXXXXXXXAAGLFVFPVQSRVTGA 316
+ + ++++GAKV +A F WP LKLCS+ L G++VFP+ SRVTG+
Sbjct: 226 EINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGS 285
Query: 317 KYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376
+Y Y WM++AQ+N WHV++DA LGPKDMDS GLS++ PDF++ SFY+VFG +P+GFGCL
Sbjct: 286 RYPYLWMSVAQENGWHVMIDACGLGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSGFGCL 345
Query: 377 LIKKSVMGSLQNQSGQTGSGMVKITP-EYPLYL 408
+KKS + L++ TG GM+ + P + P+ L
Sbjct: 346 FVKKSTISILESS---TGPGMINLVPTDNPISL 375
|
|
| TAIR|locus:2127253 AT4G22980 "AT4G22980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 4.5e-77, Sum P(3) = 4.5e-77
Identities = 134/361 (37%), Positives = 198/361 (54%)
Query: 83 SRSLARLHAQREFLRATA----LAAERVFETEESIPDLSEAFSKFLTMYPKYQSSDKIDQ 138
S S++ + EF T L F ++ES+P L +F +T +P Y +++ D
Sbjct: 24 SHSMSEKPEELEFSVTTTGTSFLTRNTKFTSQESLPRLRTSFYDLITAFPDYLQTNQADH 83
Query: 139 LRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWES-STFSLSEITANL----SNHALYGGA 193
LR+ EY +LS + LFSY Q ES S + S +T + S L
Sbjct: 84 LRSTEYQNLSSSSHVFGQQQPLFSYSQFREISESESDLNHSLLTLSCKQVSSGKELLSFE 143
Query: 194 EKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQ 253
E+ + I+ RI +N+ E+EY ++ T R SAFK++AE Y F TN LLT+++YE +
Sbjct: 144 EESRFQSRIRKRITSFMNLEESEYHMILTQDRSSAFKIVAELYSFKTNPNLLTVYNYEDE 203
Query: 254 SVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLXXXXXXXXXXXXXXAAGLFVFPVQSRV 313
+V M + +++KG K SA F WP+ ++ S L GLFVFP+QS V
Sbjct: 204 AVEEMIRISEKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRGKR---GLFVFPLQSLV 260
Query: 314 TGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFD-PTG 372
TGA YSY WM+LA+++ WHVLLD +LG KDM++LGLSLF+PDF+I SF V G D P+G
Sbjct: 261 TGASYSYSWMSLARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSFTEVLGQDDPSG 320
Query: 373 FGCLLIKKSVMGSLQNQ-SGQTGSGMVKITPEYPLYLSDSVDGLDRLAGV--EDDESSDN 429
FGCL +KKS +L + + VK P + + ++ G + + V ED +++
Sbjct: 321 FGCLFVKKSSSTALSEEPTNPENLTAVKAEPSWK-WKTEYQAGYNEITPVDHEDHKAAST 379
Query: 430 S 430
S
Sbjct: 380 S 380
|
|
| UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 304 LFVFPVQSRVTGAKYSYQWMA---------LAQQNHWHVLLDAGS-LGPKDMDSLGLSLF 353
LF +P QS +G++Y W+ ++ W+VLLDA + +G +D LS+
Sbjct: 198 LFCYPAQSNFSGSRYPLSWIGEVKSGQMRPVSAPGKWYVLLDAAAYVGTSPLD---LSVH 254
Query: 354 RPDFIITSFYRVFGFDPTGFGCLLI 378
+ DF+ SFY++FGF PTG G LL+
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLV 278
|
|
| UNIPROTKB|F1PDQ7 MOCOS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 304 LFVFPVQSRVTGAKYSYQWMA---------LAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354
LF +P QS +G +Y W+ ++ W VLLDA S L LS+ +
Sbjct: 197 LFCYPAQSNFSGTRYPLSWIGEVKAGRMCPVSVPGKWFVLLDAASY--VSTSPLDLSVHQ 254
Query: 355 PDFIITSFYRVFGFDPTGFGCLLIKKSV 382
DF+ SFY++FGF PTG G LL+ V
Sbjct: 255 ADFVPLSFYKLFGF-PTGLGALLVNNRV 281
|
|
| UNIPROTKB|Q96EN8 MOCOS "Molybdenum cofactor sulfurase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 7.1e-13, Sum P(3) = 7.1e-13
Identities = 33/84 (39%), Positives = 43/84 (51%)
Query: 304 LFVFPVQSRVTGAKYSYQWMALAQQN--H-------WHVLLDAGSLGPKDMDSLGLSLFR 354
LF +P QS +G +Y W+ + H W VLLDA S L LS +
Sbjct: 197 LFCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASY--VSTSPLDLSAHQ 254
Query: 355 PDFIITSFYRVFGFDPTGFGCLLI 378
DF+ SFY++FGF PTG G LL+
Sbjct: 255 ADFVPISFYKIFGF-PTGLGALLV 277
|
|
| UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 304 LFVFPVQSRVTGAKYSYQWMA---------LAQQNHWHVLLDAGS-LGPKDMDSLGLSLF 353
LF +P QS +G +Y W+ ++ W VLLDA + +G +D LS+
Sbjct: 198 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387
+ DF+ SFY++FGF PTG G LL+ + L+
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALLR 287
|
|
| UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 304 LFVFPVQSRVTGAKYSYQWMA---------LAQQNHWHVLLDAGS-LGPKDMDSLGLSLF 353
LF +P QS +G +Y W+ ++ W VLLDA + +G +D LS+
Sbjct: 198 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387
+ DF+ SFY++FGF PTG G LL+ + L+
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALLR 287
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| scaffold_700395.1 | annotation not avaliable (895 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 872 | |||
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 5e-21 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 6e-06 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-21
Identities = 82/288 (28%), Positives = 127/288 (44%), Gaps = 37/288 (12%)
Query: 118 EAFSKFLTMYPKYQSSDK-IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFS 176
E+F K Y Y K ID+LRA E+ L V LD+ G L+S Q +
Sbjct: 2 ESFLKEFGGYYGYPDGPKPIDELRATEFARLKGVVYLDHAGATLYSESQLEAALADFS-- 59
Query: 177 LSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY 236
S + N + + T+E + +++++ N P ++Y VFT +A KL+ E++
Sbjct: 60 -SNVYGNPHSQSDSSMRSSDTIE-SARQQVLEYFNAPPSDYACVFTSGATAALKLVGETF 117
Query: 237 PFHTNKKLL-TMFDYESQSVNWMAQSAKEKGAKVY----SAWFKWPT-------LKLCST 284
P+ + T+ ++ SV + + A EKGA PT +K
Sbjct: 118 PWSSESHFCYTLENH--NSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGL 175
Query: 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNH---------WHVLL 335
R +KR A LF FP + +GAK+ + L + N W VLL
Sbjct: 176 QRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLL 235
Query: 336 DAG---SLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380
DA P D LS + DF++ SFY++FG+ PTG G LL+++
Sbjct: 236 DAAKGCGTSPPD-----LSRYPADFVVVSFYKIFGY-PTGLGALLVRR 277
|
Length = 805 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 37/194 (19%)
Query: 219 LVFTVSRGSAFKLLAESYPFHTNKK---LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275
+VFT A L+A +++ ++ S V W + AK GAKV +
Sbjct: 87 IVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQ-ELAKRTGAKV-----R 140
Query: 276 WPTLKLCST------DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQ 328
+ L L K I+ K + L S VTG + +A LA +
Sbjct: 141 V--IPLDDDGLLDLDALEKLITPKTK--------LVALSHVSNVTGTVNPVKEIAELAHE 190
Query: 329 NHWHVLLDA---GSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGS 385
+ VL+DA P D+ LG DF+ S ++ PTG G L ++K ++
Sbjct: 191 HGALVLVDAAQAAGHLPIDVQELG-----CDFLAFSGHKWL-LGPTGIGVLYVRKELLEE 244
Query: 386 LQNQSGQTGSGMVK 399
L + G GM++
Sbjct: 245 L--EPFLGGGGMIE 256
|
Length = 405 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 872 | |||
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.97 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.95 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.94 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.94 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.93 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.92 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.92 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.92 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.92 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.89 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.88 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.88 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.87 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 99.86 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.86 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.85 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.83 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.82 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.82 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.77 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.75 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.75 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.74 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.74 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.73 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.72 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.71 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.71 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.7 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.7 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.67 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.66 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.65 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.65 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.61 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.59 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.58 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.58 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.58 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.57 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.57 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.56 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.55 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.52 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.52 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.51 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.5 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.5 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.5 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.49 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.48 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.47 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.47 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.47 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.46 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.46 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.46 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.46 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.46 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.46 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.46 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.44 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.42 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.41 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.41 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.41 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.41 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.4 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.4 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.4 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.4 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.4 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.4 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.4 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.39 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.39 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.39 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.39 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.38 | |
| PLN02721 | 353 | threonine aldolase | 99.38 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.38 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.38 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.38 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.38 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.37 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.36 | |
| PLN02263 | 470 | serine decarboxylase | 99.35 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.35 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.35 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.34 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.34 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.33 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.32 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.32 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.32 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.32 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.31 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.3 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.3 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.3 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.29 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.28 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.28 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.28 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.27 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.27 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.26 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.26 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.26 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.26 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.26 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.25 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.24 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.24 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.23 | |
| PRK07324 | 373 | transaminase; Validated | 99.23 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.23 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.22 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.22 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.22 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.21 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.21 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.2 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.2 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.19 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.19 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.19 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.19 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.18 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.18 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.18 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.16 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.15 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.15 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.15 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.14 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.14 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.14 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.13 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.13 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.13 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.12 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.12 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.12 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.11 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.11 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.1 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.1 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.1 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.09 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.08 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.08 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.07 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.07 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.06 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.06 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.05 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.03 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.02 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.99 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.95 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.94 | |
| PLN02822 | 481 | serine palmitoyltransferase | 98.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 98.92 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.9 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.9 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.89 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 98.89 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.88 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.87 | |
| PLN02656 | 409 | tyrosine transaminase | 98.87 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.86 | |
| PLN02187 | 462 | rooty/superroot1 | 98.86 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 98.86 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.85 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.85 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.85 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 98.83 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 98.83 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.83 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.82 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.82 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.8 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.8 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 98.8 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.79 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.78 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 98.76 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.75 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.74 | |
| PRK08068 | 389 | transaminase; Reviewed | 98.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.72 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.71 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.7 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 98.7 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.69 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.68 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 98.68 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.67 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.67 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 98.66 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.65 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.65 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 98.63 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.63 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.62 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 98.61 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 98.61 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 98.6 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.57 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.57 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.57 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.56 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.53 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.51 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.49 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.49 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.49 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.48 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 98.48 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.47 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 98.47 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 98.46 | |
| PLN02368 | 407 | alanine transaminase | 98.46 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 98.45 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 98.45 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 98.41 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 98.4 | |
| PLN02231 | 534 | alanine transaminase | 98.38 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 98.36 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.36 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 98.31 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.29 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 98.28 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.27 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 98.26 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 98.21 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.21 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 98.19 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 98.15 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 98.14 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 98.14 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 98.14 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 98.13 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.09 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.08 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.03 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 98.02 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.02 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 97.96 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 97.96 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 97.95 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 97.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 97.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.89 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 97.86 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 97.72 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.7 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 97.69 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.68 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 97.65 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 97.65 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 97.62 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.57 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 97.55 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 97.52 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 97.48 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.44 | |
| PLN02397 | 423 | aspartate transaminase | 97.42 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 97.35 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 97.3 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.26 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 97.12 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 97.05 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.04 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 97.04 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 97.01 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 96.93 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 96.93 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.72 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 96.58 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 96.57 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 96.48 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 96.37 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 96.33 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 96.26 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 96.21 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 96.17 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.16 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 96.12 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 96.08 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 96.06 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 96.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 95.99 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 95.99 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 95.98 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 95.94 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 95.91 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 95.65 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 95.64 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 95.57 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 95.52 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 95.4 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 95.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 95.29 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 95.11 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 95.1 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 95.07 | |
| PRK07046 | 453 | aminotransferase; Validated | 95.02 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 95.01 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 95.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 94.98 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 94.96 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 94.84 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 94.68 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 94.48 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 94.28 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 94.28 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 94.22 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 94.04 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 94.02 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 94.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 93.87 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 93.49 | |
| PRK07678 | 451 | aminotransferase; Validated | 93.44 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 93.37 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 93.31 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 92.88 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 92.81 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 92.79 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 92.42 | |
| PRK06105 | 460 | aminotransferase; Provisional | 92.12 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 91.97 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 91.9 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 91.43 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 91.37 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 91.04 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 90.95 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 90.71 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 90.44 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 90.09 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 89.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 89.92 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 89.76 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 89.36 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 89.04 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 88.96 | |
| PLN02721 | 353 | threonine aldolase | 88.8 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 88.54 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 88.43 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 88.33 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 87.83 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 87.25 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 85.79 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 85.78 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 85.6 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 85.58 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 85.01 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 84.63 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 84.5 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 84.3 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 83.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 83.51 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 82.35 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 82.26 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 81.71 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 81.64 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 80.36 |
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-96 Score=825.26 Aligned_cols=666 Identities=51% Similarity=0.724 Sum_probs=584.3
Q ss_pred CCCCccccccChhHHhHHHHHHHHHHHHHhcccCCCcccCCCCCCccccccCccchhhhHHHHHHHHHHHHHHhhhhccc
Q 002866 27 GSDSTVDIKRNPSILRKLEEHRLREALEEASEDGSLFKSQDIESEPLANQDESLGRSRSLARLHAQREFLRATALAAERV 106 (872)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~rr~f~~~~~~~~~~~ 106 (872)
|++|..+ +++....|++.++++|++++||+++|+++|+||++-. |++..+++||+|||++++++ ++.++..+.|.
T Consensus 7 gs~S~~~-r~~e~s~~~yldhag~tl~sesq~~g~~~~sq~~e~~---nphs~~~ts~~l~~~v~Q~r-~ril~~f~tta 81 (728)
T KOG2142|consen 7 GSSSPQS-RDREFSRLAYLDHAGRTLFSESQLEGVAFQSQSSENA---NPHSHLGTSRSLARLVAQVR-LRILALFNTTA 81 (728)
T ss_pred CCCCchh-hhHHHHHHHHHHhhhhhhhhhcccchhhhhhhccccC---CCcccccchHHHHHHHHHHH-HHHHHHhcccc
Confidence 7888888 6666667789999999999999999999999999988 69999999999999999999 89988889999
Q ss_pred ccCCCCCcchHHHHHHHHhhCCCCCCchhHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHh
Q 002866 107 FETEESIPDLSEAFSKFLTMYPKYQSSDKIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITAN 183 (872)
Q Consensus 107 f~~h~~lP~l~~a~~~FL~~~p~y~~t~~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~n 183 (872)
|+.++++|++.+|+..|+++||.|++++.+|.+|..+|.++.. .+++||.+.++++..+...++....|++.....+
T Consensus 82 ~dy~v~lp~~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~ 161 (728)
T KOG2142|consen 82 FDYEVSLPALTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEAN 161 (728)
T ss_pred ccccchhHHHHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccC
Confidence 9999999999999999999999999999999999999999876 5899999999999877676776656777777777
Q ss_pred hccCcCcCCCchHHHHHH-HHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHH
Q 002866 184 LSNHALYGGAEKGTVEHD-IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSA 262 (872)
Q Consensus 184 L~~~~~ygNpsS~~~iee-ARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~A 262 (872)
+..+.+|+.+.-...... ++.+++.+|+++.++|.++||++...|+.|++++||++-...+++.++||..+|+++.+.|
T Consensus 162 ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~lltiFgyetgAvlv~~r~A 241 (728)
T KOG2142|consen 162 LSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPKLLTIFGYETGAVLVMNRSA 241 (728)
T ss_pred cccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccchheeecCCCchhhHHHhhhh
Confidence 777778877654444444 8999999999999999999999999999999999999877779999999999999999999
Q ss_pred HHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCC
Q 002866 263 KEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGP 342 (872)
Q Consensus 263 krkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG 342 (872)
+.+|+++..+.+.||...++.++|++.+...+++.++...+|++|+.++++||.+++|.|+..+++++|+++||+.++++
T Consensus 242 ~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~ 321 (728)
T KOG2142|consen 242 ELKGGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALALGP 321 (728)
T ss_pred HhhcCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhccCc
Confidence 99999999999999999999999999998766667777899999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEcccccCCCC-CCceEEEEEeCCCcccccCCCCCC-CCCeEEEeeCCCccccc----------
Q 002866 343 KDMDSLGLSLFRPDFIITSFYRVFGFD-PTGFGCLLIKKSVMGSLQNQSGQT-GSGMVKITPEYPLYLSD---------- 410 (872)
Q Consensus 343 ~~mipLDLs~l~~DFlv~S~HK~fG~~-PtGvG~LyVRk~~i~~L~P~~~~~-GgGtV~~vP~~~~~l~d---------- 410 (872)
++|..+.++.+.|||..+|+|+.||.+ |+|+|||.|+|..+..|+-.+..+ +.|+|++.|+. |+++
T Consensus 322 kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~lrtGcfcn~Gack~~pgl--~~~~~~~~~~~g~~ 399 (728)
T KOG2142|consen 322 KDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLELRTGCFCNIGACKIYPGL--YLEMSQKGLSAGKG 399 (728)
T ss_pred chHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhceeccCCCCCCCcceeecccc--cHHHHHHHhhhccc
Confidence 999899999999999999999999987 999999999999998888777555 89999999942 2221
Q ss_pred -------------------------------ccccccccCCccCCCCCCCccccccCCCCCCCCcccccccccccCCCCC
Q 002866 411 -------------------------------SVDGLDRLAGVEDDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPP 459 (872)
Q Consensus 411 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (872)
.+..|||+|+|+|+++++|+ +++||+
T Consensus 400 cgD~dg~~~s~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~~~se~e~~~n~----------------------~a~Pl~- 456 (728)
T KOG2142|consen 400 CGDNDGQPVSGYMQTPADVGAYLSAQVSDVLETDPLMKSPVFSEQEDSDNG----------------------IATPLL- 456 (728)
T ss_pred cccCCCCcccccccchhhhhHHHHHhhhhhhhccccccccccchhhhcccc----------------------ccCCcc-
Confidence 24469999999999999873 689999
Q ss_pred ccccCCCCCccCCCCCCccccCCCcccccccccCCCCCccccchhhhhhhcccccccccCCcchhhcccCcccccCCCCC
Q 002866 460 LWFSGKKNHKRLSPKPTWKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFSGMTHNFRNNNKS 539 (872)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (872)
.|++-+| +|||++.+++.+
T Consensus 457 ~~~~~~R-----------------------------------~~d~~~~s~~~~-------------------------- 475 (728)
T KOG2142|consen 457 ERVQLKR-----------------------------------HFDAAVASYPIK-------------------------- 475 (728)
T ss_pred hhhcccc-----------------------------------hhhhhhhhhhhh--------------------------
Confidence 8976665 478999887643
Q ss_pred CCCCCccccccCCccccCCCcccccccccCccCCCCCCCcccccccCCcccchhhhhhhhhhhhcccchhhhcccccCcc
Q 002866 540 SGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLTSEICSEVKESAIRRETEGEFRLLGRREGSR 619 (872)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (872)
.+++||++++...+ + -+...+-|..++|++|||+|||+||+|+|+|.+.
T Consensus 476 ---~~~~EI~~~~~~~~--------------------------g-l~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~- 524 (728)
T KOG2142|consen 476 ---CAAFEIEEENSGSQ--------------------------G-LKYDRSWMSVDMNGSALRQETESELCLIGPRIKV- 524 (728)
T ss_pred ---hceeEeeccCcccc--------------------------c-cccccccccccccccceeeecccceeeeccccch-
Confidence 47778888643221 1 1455677888999999999999999999988864
Q ss_pred ccCcccccccCCCCCCCcccccccchhhhhhcccccccccccccccCCCCCCCCCCCCCCCCCCCCCcceeechhhhhhh
Q 002866 620 YIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHTMETGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDHINM 699 (872)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~gLdh~d~ 699 (872)
.++++ ++ +||||. +.+++||+|..+.+|+ + +|+||||+|+
T Consensus 525 --------~~d~~-~~-~~vs~~----------~sl~~~~a~~~s~~d~------------------~--~c~~iDh~~~ 564 (728)
T KOG2142|consen 525 --------QEDEQ-SE-RRVSFP----------TSLEQGEASKCSSYDC------------------P--PCRGIDHVDS 564 (728)
T ss_pred --------hhhcc-cc-eeecch----------hhhhhhhhhhcccccC------------------c--cccccchhhh
Confidence 67778 66 999995 6789999999998887 1 2999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCe
Q 002866 700 LGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGIS 779 (872)
Q Consensus 700 lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~Is 779 (872)
+|++++++|.|+|+|||+.+|..+.|+.+. ..-++||+||||++++.||+.|+|||+|+.++++.|.+|+++|++++|+
T Consensus 565 lgln~t~~r~r~ll~wl~~sl~~~~~~~~~-~~~~nlvq~ygpk~~~erG~~~~fnl~d~~~~fr~p~IV~~lae~E~is 643 (728)
T KOG2142|consen 565 LGLNLTTNRGRELLNWLVQSLRNLQHSESS-STTVNLVQIYGPKTKYERGPAVAFNLFDLSKRFRAPIIVNKLAEREEIS 643 (728)
T ss_pred hhHHhhhhhhhhHHHHHHHhcccccccccc-cccccceeeecCccccccChhheeehhhhhccccchhhhcchhhhhccc
Confidence 999999999999999999999999998754 3578999999999999999999999999999999999999999999999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCC-CCccceeEEEEeccccCCHHHHHHHHHHHHHhcCcccc
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGK-GGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNPAFV 858 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~~f~ 858 (872)
++.+++.||.|.+ +.. .|.+ ..-|+..++ .+++++.||||+|||+||||||||+|.||++||||+||
T Consensus 644 l~~~~l~~iri~d-p~~--r~~d---------q~~~~r~~~~~~~~Rl~vvt~~lgfltnfedv~K~w~fv~~fl~pgf~ 711 (728)
T KOG2142|consen 644 LGELSLGHIRIQD-PCH--RDID---------QLLGQRRGRTNGESRLSVVTARLGFLTNFEDVYKLWEFVARFLDPGFV 711 (728)
T ss_pred ccceeeeeeEEec-Ccc--hhhh---------HHhhhhccccccceeEeeeeeehhhhhchHHHHHHHHHHHHhcChhhh
Confidence 9999999999988 322 1322 111222222 68889999999999999999999999999999999999
Q ss_pred ccCCCCccc
Q 002866 859 REGALPTVE 867 (872)
Q Consensus 859 ~~~~~~~~~ 867 (872)
+++.|++++
T Consensus 712 ~~~~~~~~~ 720 (728)
T KOG2142|consen 712 EKVELRTVE 720 (728)
T ss_pred hhccccchh
Confidence 999999993
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=588.55 Aligned_cols=439 Identities=26% Similarity=0.436 Sum_probs=331.2
Q ss_pred HHHHhhC-CCCCCc---hhHHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch-
Q 002866 121 SKFLTMY-PKYQSS---DKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK- 195 (872)
Q Consensus 121 ~~FL~~~-p~y~~t---~~ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS- 195 (872)
..||..| |.|.+. ..++.+|+.+||.|..+|||||||++|+++.+++++.+ .+.. ..++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~R~~~fp~l~~~iYLD~Aatt~~~~~~V~~~~~-------~~~~-----~~~~np~s~ 69 (805)
T PLN02724 2 ESFLKEFGGYYGYPDGPKPIDELRATEFARLKGVVYLDHAGATLYSESQLEAALA-------DFSS-----NVYGNPHSQ 69 (805)
T ss_pred hhHHhhhcccCCcccchhhHHHHHHHHhhhcCCCEeEeCCCCCCCCHHHHHHHHH-------HHHh-----hccCCCCcC
Confidence 3566655 345553 35999998789999989999999999988766665322 1211 14566653
Q ss_pred -------HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 196 -------GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 196 -------~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.+.++++|++||+||||++++|.||||+|+|+|+|+|+++++|++|++||+..+ ||+++..|++.++++|++
T Consensus 70 ~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~-eH~svl~~~~~a~~~G~~ 148 (805)
T PLN02724 70 SDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLE-NHNSVLGIREYALEKGAA 148 (805)
T ss_pred cchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeec-cccchHHHHHHHHHcCCe
Confidence 368999999999999998888889999999999999999999999999887644 678888888889999999
Q ss_pred EEEEeccC-------CCCccCH--HHHHHHHhhh--hccCCCCCceEEEEeCccCcccchhcHHHHHHHHHC--------
Q 002866 269 VYSAWFKW-------PTLKLCS--TDLRKQISSK--KRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQN-------- 329 (872)
Q Consensus 269 V~~Vpvd~-------p~g~Id~--edLe~~I~~~--~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~-------- 329 (872)
|++++++. ..+.++. ++|++.+... .+...+++|+||+++|+||+||+++|+++|..+++.
T Consensus 149 v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~ 228 (805)
T PLN02724 149 AIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKS 228 (805)
T ss_pred EEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccC
Confidence 99999862 1233332 5566553210 000123467999999999999999999988776552
Q ss_pred -CcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCCCCCCCCCeEEEeeCCCccc
Q 002866 330 -HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYL 408 (872)
Q Consensus 330 -G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~~~~~GgGtV~~vP~~~~~l 408 (872)
+|+|+|||||++|+ +++||++++|||+++|+|||||+ |+|+|+||||+++++.|.|.. .|||++...-....|.
T Consensus 229 g~~~v~vDaaQ~~g~--~piDv~~~~~Dfl~~S~HK~~Gg-P~G~G~L~vr~~~~~~l~p~~--~GGg~~~~~~~~~~~~ 303 (805)
T PLN02724 229 GRWMVLLDAAKGCGT--SPPDLSRYPADFVVVSFYKIFGY-PTGLGALLVRRDAAKLLKKKY--FGGGTVAASIADIDFV 303 (805)
T ss_pred cceEEEeehhhhcCC--CCCChhhcCCCEEEEecceeccC-CCCceEEEEehhhhhhhcCCc--cCCCceEEEeccccee
Confidence 48999999999998 79999999999999999999999 999999999999998898874 5666653211000000
Q ss_pred ccccccccccCCccCCCCCCCccccccCCCCCCCCcccccccccccCCCCCccccCCCCCccCCCCCCccccCCCccccc
Q 002866 409 SDSVDGLDRLAGVEDDESSDNSFWIDLGQSPLGSDNAGQLNKQKIASPLPPLWFSGKKNHKRLSPKPTWKIYGSPIFDDK 488 (872)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (872)
. . +++
T Consensus 304 -------------------------~-------------------------------------~------------~~~- 308 (805)
T PLN02724 304 -------------------------K-------------------------------------R------------RER- 308 (805)
T ss_pred -------------------------e-------------------------------------c------------ccc-
Confidence 0 0 000
Q ss_pred ccccCCCCCccccchhhhhhhcccccccccCCcchhhcccCcccccCCCCCCCCCCccccccCCccccCCCccccccccc
Q 002866 489 EANLGASDDHHVLSFDAAVLSVSQDLDRVKEVPEEEQFSGMTHNFRNNNKSSGCPRVEEIQEEPSISKDSTGFASNSVMN 568 (872)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (872)
-++-++.||++.. .+
T Consensus 309 ---------------------------------~~~rfE~GT~n~~---------~i----------------------- 323 (805)
T PLN02724 309 ---------------------------------VEQRFEDGTISFL---------SI----------------------- 323 (805)
T ss_pred ---------------------------------HHHHhcCCCcchh---------HH-----------------------
Confidence 0012222333310 00
Q ss_pred CccCCCCCCCcccccccCCcccchhhhhhhhhhhhcccchhhhcccccCccccCcccccccCCCCCCCcccccccchhhh
Q 002866 569 GSCLNNSSSSSQHHGLANGLTSEICSEVKESAIRRETEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRK 648 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (872)
.|
T Consensus 324 ---------------------------------------------------------~~--------------------- 325 (805)
T PLN02724 324 ---------------------------------------------------------AA--------------------- 325 (805)
T ss_pred ---------------------------------------------------------HH---------------------
Confidence 00
Q ss_pred hhcccccccccccccccCCCCCCCCCCCCCCCCCCCCCcceeechhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCC
Q 002866 649 ERLSHTMETGEVSVTSFDDEDYSSDGEYGDGQDWNRREPEIICRHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDS 728 (872)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~ 728 (872)
+ -.+|++++.+|++.|..|++.|++||++.|.+|+|
T Consensus 326 ----------------------------------------l-~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~--- 361 (805)
T PLN02724 326 ----------------------------------------L-RHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKH--- 361 (805)
T ss_pred ----------------------------------------H-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccC---
Confidence 0 02799999999999999999999999999999999
Q ss_pred CCCCCceEEEEeCCCC----CccccceEEEEeccCCCCccChHHHHHHHHHcCCeEeecccccccccC------------
Q 002866 729 DGESRAHLVHIYGPKI----KYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGIGFLSHIRILD------------ 792 (872)
Q Consensus 729 ~~~ng~~LV~IYGp~~----~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~G~l~~i~~~d------------ 792 (872)
.||.|.|+||||.. ...|||||+|||.+.+|..|+|..|++||+.+||.+|+|++|++.+..
T Consensus 362 --~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~ 439 (805)
T PLN02724 362 --GNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQA 439 (805)
T ss_pred --CCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHH
Confidence 57999999999862 257999999999999999999999999999999999999999964221
Q ss_pred CcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH-hcCc
Q 002866 793 SPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK-FLNP 855 (872)
Q Consensus 793 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~-Fld~ 855 (872)
.+.+ |.. |.+..+.+.|++ .|+||||||+|||+|||++|++||.+ |++.
T Consensus 440 ~~~~--~~~----c~~~~~~~~~~~--------~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~ 489 (805)
T PLN02724 440 NFEA--GHV----CWDDQDVIHGRP--------TGAVRVSFGYMSTFEDCQKFIDFIISSFVST 489 (805)
T ss_pred Hhhc--CCc----cCchhheecCcc--------cceEEEEcCccCCHHHHHHHHHHHHHHhhcC
Confidence 1111 211 233333444443 68999999999999999999999999 5444
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=497.45 Aligned_cols=382 Identities=24% Similarity=0.288 Sum_probs=306.3
Q ss_pred hHHHHHhhcccCCCC-----ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHHH
Q 002866 135 KIDQLRANEYLHLSP-----KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVEH 200 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~-----~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~ie 200 (872)
++..+|+ +||.|.+ ++|||++|+++.|..|++++.+ | +. . .++|++ ..+.++
T Consensus 4 ~~~~~r~-~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~---~----~~-~-----~~an~~r~~~~~~~~~t~~~e 69 (405)
T COG0520 4 DVAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAVAE---Y----YR-R-----YNANVHRGAHTLAEEATDLYE 69 (405)
T ss_pred ChHHHHh-hCHHHhhccCCCeEEecCcccccCCHHHHHHHHH---H----HH-h-----hcCCcCcccchHHHHHHHHHH
Confidence 4666886 6998876 5899999999999999998654 1 11 1 233433 236899
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCCHHHHHHHHHhhCC--CCCCCeEEEe-cccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 201 DIKTRIMDHLNIPE-NEYGLVFTVSRGSAFKLLAESYP--FHTNKKLLTM-FDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 201 eARerIA~lLgA~~-dEY~VVFTsnATeALnLVaeslp--f~~Gd~ILT~-~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
++|+.||+|+|+++ + +||||+|+|+|+|+++.+|. +++||+||++ .|| |..+.+|.+.+++.|++|+++|++
T Consensus 70 ~aRe~va~~~~a~~~~--eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH-~sn~~pw~~~~~~~Ga~v~~i~~~- 145 (405)
T COG0520 70 AAREAVARFLNADSSD--EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEH-HSNIVPWQELAKRTGAKVRVIPLD- 145 (405)
T ss_pred HHHHHHHHHhCCCCCC--eEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcc-hhhHHHHHHHHHhcCcEEEEEecC-
Confidence 99999999999996 4 59999999999999999997 8899997755 454 344678899999999999999998
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+++.++.++++.++. ++|+||+++|+||+||+++|++ ++++||++|++|+|||+|++|+ +++|+++++|
T Consensus 146 ~~g~~~~~~~~~~i~--------~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h--~~idv~~l~~ 215 (405)
T COG0520 146 DDGLLDLDALEKLIT--------PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGH--LPIDVQELGC 215 (405)
T ss_pred CCCCcCHHHHHHhcC--------CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCc--cCCCchhcCC
Confidence 578999999988664 4699999999999999999997 5678899999999999999998 7999999999
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccCCCCCCCCCeEEEeeCCCcccccccccccccCCccCCCCCCCcccccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAGVEDDESSDNSFWIDL 435 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~~~~~GgGtV~~vP~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (872)
||++||+|||+++ |+|+|+||+|++.++.|.|. ..||||+..+....++.
T Consensus 216 Df~afsgHKwl~g-P~GiGvLy~r~~~l~~l~P~--~~gg~~~~~~~~~~~~~--------------------------- 265 (405)
T COG0520 216 DFLAFSGHKWLLG-PTGIGVLYVRKELLEELEPF--LGGGGMIEYVSRDEGVT--------------------------- 265 (405)
T ss_pred CEEEEcccccccC-CCceEEEEEchHHHhhcCCc--ccCCCceeeeccccccc---------------------------
Confidence 9999999998777 99999999999999999775 47778874422110000
Q ss_pred CCCCCCCCcccccccccccCCCCCccccCCCCCccCCCCCCccccCCCcccccccccCCCCCccccchhhhhhhcccccc
Q 002866 436 GQSPLGSDNAGQLNKQKIASPLPPLWFSGKKNHKRLSPKPTWKIYGSPIFDDKEANLGASDDHHVLSFDAAVLSVSQDLD 515 (872)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (872)
|.+
T Consensus 266 -------------------------------------------------~~~---------------------------- 268 (405)
T COG0520 266 -------------------------------------------------LAE---------------------------- 268 (405)
T ss_pred -------------------------------------------------ccC----------------------------
Confidence 000
Q ss_pred cccCCcchhhcccCcccccCCCCCCCCCCccccccCCccccCCCcccccccccCccCCCCCCCcccccccCCcccchhhh
Q 002866 516 RVKEVPEEEQFSGMTHNFRNNNKSSGCPRVEEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLTSEICSE 595 (872)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (872)
...-|+-+|++ |...
T Consensus 269 ------~p~rfe~gTpn-----------------------------------------------------------~~~~ 283 (405)
T COG0520 269 ------LPLRFEAGTPN-----------------------------------------------------------IAGA 283 (405)
T ss_pred ------cchhhccCCch-----------------------------------------------------------HHHH
Confidence 00001111111 1000
Q ss_pred hhhhhhhhcccchhhhcccccCccccCcccccccCCCCCCCcccccccchhhhhhcccccccccccccccCCCCCCCCCC
Q 002866 596 VKESAIRRETEGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHTMETGEVSVTSFDDEDYSSDGE 675 (872)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (872)
.|
T Consensus 284 ------------------------------i~------------------------------------------------ 285 (405)
T COG0520 284 ------------------------------IG------------------------------------------------ 285 (405)
T ss_pred ------------------------------Hh------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCcceeechhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEE
Q 002866 676 YGDGQDWNRREPEIICRHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFN 755 (872)
Q Consensus 676 ~~~~~~~~~~~~~i~c~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFN 755 (872)
-..+|++++.+|+..|.+|++.|+.|+++.|..+.. |+||||.. ..|+++|+||
T Consensus 286 --------------l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~-----------v~i~g~~~-~~r~~~vsF~ 339 (405)
T COG0520 286 --------------LAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPG-----------VEIYGPPD-ADRGGIVSFN 339 (405)
T ss_pred --------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC-----------eEEecCCc-ccCceEEEEE
Confidence 013799999999999999999999999999999997 99999988 8999999999
Q ss_pred eccCCCCccChHHHHHHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccc
Q 002866 756 VRDKERGLINPEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGF 835 (872)
Q Consensus 756 v~d~~G~~v~p~~VqkLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~ 835 (872)
+.+ ++|+.|.+.++.+||.+|+|++|.....+.. |. .++|||||++
T Consensus 340 v~~-----~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~--------------------~~---------~~~iR~S~~~ 385 (405)
T COG0520 340 VKG-----IHPHDVATLLDEKGIAVRAGHHCAQPLHRLL--------------------GV---------DATIRASLHL 385 (405)
T ss_pred eCC-----CCHHHHHHHHHhCCeEEEeccccccHHHHhc--------------------CC---------CCceEEEEee
Confidence 999 9999999999999999999999974321111 01 2349999999
Q ss_pred cCCHHHHHHHHHHHHHhcC
Q 002866 836 LTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 836 lSnFEDVyrl~~Fva~Fld 854 (872)
|||+|||++|++.|++++.
T Consensus 386 YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 386 YNTEEDVDRLLEALKKALA 404 (405)
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999754
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=385.65 Aligned_cols=225 Identities=18% Similarity=0.220 Sum_probs=187.0
Q ss_pred hHHHHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHH
Q 002866 135 KIDQLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVE 199 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~i 199 (872)
+++.+|. +||.+++ +||||||+++|+|+.|++++.+ ++. . .++|++ ..+.+
T Consensus 4 ~~~~~r~-~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~-------~~~-~-----~~~~~~~~~~~~~~~~~~~~ 69 (406)
T PRK09295 4 SVEKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE-------FYR-H-----GYAAVHRGIHTLSAQATEKM 69 (406)
T ss_pred ChHHHHh-hCccccCcCCCCceEEEeCcccccCCHHHHHHHHH-------HHH-h-----cCCCCCCcccHHHHHHHHHH
Confidence 4678897 7999973 7999999999999999998543 111 1 223332 23678
Q ss_pred HHHHHHHHHhcCC-CCCCCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchh-HHHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHLNI-PENEYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQS-VNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lLgA-~~dEY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGaeV~~Vpv 274 (872)
+++|++||+++|+ +++ +|+||+|+|+|+++++.++ .+++|++||+. +.+|++ +..|...+++.|++++.+++
T Consensus 70 ~~~r~~la~~~~~~~~~--~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~-~~~~~s~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T PRK09295 70 ENVRKQAALFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIIS-EMEHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_pred HHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEEC-cchhhHHHHHHHHHHHHcCcEEEEEec
Confidence 9999999999998 444 6999999999999999987 46789998766 334544 45677778889999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+. ++.++.++|++++.. +|+||++++++|.||+++|++ +++.||++|+++++|++|++|+ .++|+..+
T Consensus 147 ~~-~~~~d~~~l~~~i~~--------~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~ 215 (406)
T PRK09295 147 NP-DGTLQLETLPALFDE--------RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH--HPVDVQAL 215 (406)
T ss_pred CC-CCCCCHHHHHHhcCC--------CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc--cccCchhc
Confidence 75 577899999888753 589999999999999999997 5678899999999999999997 69999999
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++||+++|+||++| |.|+|+||++++.++.++|.
T Consensus 216 ~~D~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~ 249 (406)
T PRK09295 216 DCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPW 249 (406)
T ss_pred CCCEEEeehhhccC--CCCcEEEEEchHhHhhCCCc
Confidence 99999999999887 88999999999988888653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=372.32 Aligned_cols=212 Identities=21% Similarity=0.254 Sum_probs=175.6
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
|||||+|++++|+.|++++.+ +..+ .++||+ ..+.++++|+.||+++|++++ ++|+|
T Consensus 1 iYld~~~~~~~p~~v~~a~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~-~~v~~ 66 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISD--------YLRN-----FYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD-EEVVF 66 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHH--------HHHH-----SGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT-EEEEE
T ss_pred CEeeCCCccCCCHHHHHHHHH--------HHHH-----hhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc-ccccc
Confidence 799999999999999998643 1111 234441 247889999999999999873 47999
Q ss_pred eCCHHHHHHHHHhhC--CCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESY--PFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaesl--pf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++.++ ++++|++|++.. .+|.+.. +|...+++.|++|++++++. ++.++.+++++.|..
T Consensus 67 ~~~~t~a~~~~~~~l~~~~~~g~~vl~~~-~~~~s~~~~~~~~~~~~g~~v~~i~~~~-~~~~~~~~~~~~l~~------ 138 (371)
T PF00266_consen 67 TSNGTEALNAVASSLLNPLKPGDEVLVTS-NEHPSNRYPWEEIAKRKGAEVRVIPADP-GGSLDLEDLEEALNP------ 138 (371)
T ss_dssp ESSHHHHHHHHHHHHHHHGTTTCEEEEEE-SSHHHHHHHHHHHHHHTTEEEEEEEEGT-TSSCSHHHHHHHHHT------
T ss_pred ccccchhhhhhhhcccccccccccccccc-ccccccccccccccccchhhhccccccc-cchhhhhhhhhhhcc------
Confidence 999999999999998 578999987653 4566665 56677778999999999986 578899999999963
Q ss_pred CCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
+++||+++|++|.||+++|++.| +.||++|++++|||+|++|. +++|++++++||+++|+|| |++ |.|+|+||
T Consensus 139 --~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~--~~id~~~~~~D~~~~s~~K-l~g-p~G~g~l~ 212 (371)
T PF00266_consen 139 --DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGC--VPIDLDELGADFLVFSSHK-LGG-PPGLGFLY 212 (371)
T ss_dssp --TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTT--SS--TTTTTESEEEEESTS-TTS-SSTEEEEE
T ss_pred --ccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccc--ccccccccccceeeecccc-cCC-CCchhhhe
Confidence 59999999999999999999855 57899999999999999998 7999999999999999999 555 89999999
Q ss_pred EeCCCcccccCCC
Q 002866 378 IKKSVMGSLQNQS 390 (872)
Q Consensus 378 VRk~~i~~L~P~~ 390 (872)
|+++.++.++|..
T Consensus 213 v~~~~~~~~~p~~ 225 (371)
T PF00266_consen 213 VRPEAIERLRPAK 225 (371)
T ss_dssp EEHHHHHHHHTSS
T ss_pred ehhhhhhcccccc
Confidence 9999999887753
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=369.26 Aligned_cols=204 Identities=15% Similarity=0.149 Sum_probs=179.9
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+|||||+||+|+.+.|+++++. ++. ..||||+| ...+++||++||+++|++++ +|+|
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~-------~~~------~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~--eIiF 66 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLP-------YLT------EVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE--EIIF 66 (386)
T ss_pred cccccccccCCCCHHHHHHHHH-------HHH------hhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC--eEEE
Confidence 7999999999999999998643 122 24899986 26899999999999999985 5999
Q ss_pred eCCHHHHHHHHHhh--CCCC---CCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 222 TVSRGSAFKLLAES--YPFH---TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 222 TsnATeALnLVaes--lpf~---~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
|+|+||+.|+++.+ +.++ .|.+|+|+ ..||.+|+...++++++|++|+++|++. +|.+++++|+++|++
T Consensus 67 TSG~TEsnNlaI~g~~~a~~~~~~~~HIIts-~iEH~aVl~~~~~Le~~g~~Vtyl~V~~-~G~v~~e~L~~al~~---- 140 (386)
T COG1104 67 TSGATESNNLAIKGAALAYRNAQKGKHIITS-AIEHPAVLNTCRYLERQGFEVTYLPVDS-NGLVDLEQLEEALRP---- 140 (386)
T ss_pred ecCCcHHHHHHHHhhHHhhhcccCCCeEEEc-ccccHHHHHHHHHHHhcCCeEEEeCCCC-CCeEcHHHHHHhcCC----
Confidence 99999999999988 4443 47788877 4688999877777788899999999998 799999999999964
Q ss_pred CCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGC 375 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~ 375 (872)
+|.||+++|+||+||++|||+.| +.++++|+.+|+||+|++|+ +|+|+..+++|++++|+||++| |+|+|+
T Consensus 141 ----~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gk--ipi~~~~~~vD~ls~SaHK~~G--pkGiGa 212 (386)
T COG1104 141 ----DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGK--IPIDLEELGVDLLSFSAHKFGG--PKGIGA 212 (386)
T ss_pred ----CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCc--eeccccccCcceEEeehhhccC--CCceEE
Confidence 59999999999999999999865 56799999999999999998 9999999999999999999888 999999
Q ss_pred EEEeCCC
Q 002866 376 LLIKKSV 382 (872)
Q Consensus 376 LyVRk~~ 382 (872)
||+|+..
T Consensus 213 Lyv~~~~ 219 (386)
T COG1104 213 LYVRPGV 219 (386)
T ss_pred EEECCCC
Confidence 9997765
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=369.74 Aligned_cols=223 Identities=18% Similarity=0.180 Sum_probs=182.3
Q ss_pred HHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCC----c-----hHHHHHHH
Q 002866 138 QLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGA----E-----KGTVEHDI 202 (872)
Q Consensus 138 ~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNp----s-----S~~~ieeA 202 (872)
.+|. +||.+++ ++||||+++++.|+.|++++.+ ++ .. .++|+ + ..+.++++
T Consensus 16 ~~r~-~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~-------~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
T PLN02855 16 ETRP-DFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQD-------YY-EE-----YNSNVHRGIHALSAKATDAYELA 81 (424)
T ss_pred HHHH-hCchhccccCCCCeEEeeCccccCCCHHHHHHHHH-------HH-Hh-----cCCCCCCccchHHHHHHHHHHHH
Confidence 3564 7999863 7999999999999999998543 12 11 12222 1 13567899
Q ss_pred HHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCC
Q 002866 203 KTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 203 RerIA~lLgA~~dEY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
|+.||+++|+++. ++|+||+|+|+|+++++.++ .+++|++||+.. .+|++. ..|...+++.|++++.++++..
T Consensus 82 r~~la~~~~~~~~-~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~-~~~~s~~~~~~~~a~~~g~~v~~v~~~~~- 158 (424)
T PLN02855 82 RKKVAAFINASTS-REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV-AEHHSNIVPWQLVAQKTGAVLKFVGLTPD- 158 (424)
T ss_pred HHHHHHHcCCCCC-CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC-CccHHHHHHHHHHHHHcCCEEEEEecCCC-
Confidence 9999999999632 36999999999999999886 467899988763 356654 4677778889999999999753
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcE
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DF 357 (872)
+.++.+++++.|.. +|+||++++++|.||+++|++ +++.||++|+++++|++|++|+ +++|+..+++||
T Consensus 159 ~~~~~~~l~~~i~~--------~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~--~~~~~~~~~~d~ 228 (424)
T PLN02855 159 EVLDVEQLKELLSE--------KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH--MPVDVQTLGADF 228 (424)
T ss_pred CCcCHHHHHHHhcc--------CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--cCCCchhcCCCE
Confidence 56889999988853 589999999999999999997 4577899999999999999997 689999999999
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
+++|+||++| |.|+|+||++++.++.++|.
T Consensus 229 ~~~s~~K~~g--p~G~G~l~~~~~~~~~~~p~ 258 (424)
T PLN02855 229 LVASSHKMCG--PTGIGFLWGKSDLLESMPPF 258 (424)
T ss_pred EEeecccccC--CCccEEEEEchhhhhcCCCE
Confidence 9999999877 88999999999998888654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=352.15 Aligned_cols=225 Identities=20% Similarity=0.195 Sum_probs=186.6
Q ss_pred hHHHHHhhcccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHHHHHHH
Q 002866 135 KIDQLRANEYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVEHDIKT 204 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~ieeARe 204 (872)
.++++|. +||.+++ +||||||+++|+|+.|++++.+ .+. . .++|++ ..+.++++|+
T Consensus 2 ~~~~~r~-~fp~l~~~~iyld~a~~~~~p~~v~~a~~~-------~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~r~ 67 (398)
T TIGR03392 2 NPAQFRQ-QFPALQDGTVYLDSAATALKPQAVIDATQQ-------FYR-L-----SSGTVHRSQHQQAQSLTARYELARQ 67 (398)
T ss_pred ChhHHHH-hCCccCCCeEEeeCccccCCCHHHHHHHHH-------HHH-h-----cCCCCCCcccHHHHHHHHHHHHHHH
Confidence 4677886 6998875 8999999999999999998643 111 1 224442 2357899999
Q ss_pred HHHHhcCCC-CCCCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCC
Q 002866 205 RIMDHLNIP-ENEYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 205 rIA~lLgA~-~dEY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
.||+++|++ ++ +|+||+|+|+|+++++.++ .+++|++||+. +.+|.+. ..|...+++.|++++.+|++. ++
T Consensus 68 ~la~~~g~~~~~--~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~-~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~ 143 (398)
T TIGR03392 68 QVARFLNAPDAE--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVS-EAEHHANLIPWLMVAQQTGAKVVKLPIGA-DL 143 (398)
T ss_pred HHHHHhCCCCCC--eEEEeCChHHHHHHHHHHhhhccCCCCCEEEEC-CcchhHHHHHHHHHHHHcCcEEEEEecCC-CC
Confidence 999999995 44 5999999999999999998 47889998876 3455554 567777888999999999975 46
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEE
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFI 358 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFl 358 (872)
.++.++++++|.. +|+||++++++|.||.++|++. ++.||++|+++++|++|++|+ .++|+..+++||+
T Consensus 144 ~~~~~~l~~~i~~--------~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~~~d~~ 213 (398)
T TIGR03392 144 LPDIRQLPELLTP--------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVH--GPPDVQALDIDFY 213 (398)
T ss_pred CcCHHHHHHHhcc--------CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--CCCChhhcCCCEE
Confidence 7889999888853 5899999999999999999985 567899999999999999987 6899999999999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++|+||+|| |.|+|+||++++.++.++|.
T Consensus 214 ~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~ 242 (398)
T TIGR03392 214 AFSGHKLYG--PTGIGVLYGKTELLEAMPPW 242 (398)
T ss_pred EEecccccC--CCceEEEEEcHHHHhhCCCe
Confidence 999999887 78999999999988888663
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=350.18 Aligned_cols=225 Identities=20% Similarity=0.205 Sum_probs=188.5
Q ss_pred hHHHHHhhcccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHH
Q 002866 135 KIDQLRANEYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKT 204 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARe 204 (872)
+++++|+ +||.+++ .+||||++++|.|+.|++++.+ +... .++|++. .+.++++|+
T Consensus 5 ~~~~~r~-~fp~l~~~~~yld~a~~~~~~~~v~~a~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~r~ 70 (401)
T PRK10874 5 NPAQFRA-QFPALQDAGVYLDSAATALKPQAVIEATQQ--------FYSL-----SAGNVHRSQFAAAQRLTARYEAARE 70 (401)
T ss_pred CHHHHHH-hCCCcCCceEEEeCCcccCCCHHHHHHHHH--------HHHh-----ccCCCCCcccHHHHHHHHHHHHHHH
Confidence 5788896 6998865 9999999999999999998643 1111 2344321 367899999
Q ss_pred HHHHhcCC-CCCCCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCC
Q 002866 205 RIMDHLNI-PENEYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 205 rIA~lLgA-~~dEY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
+||+++|+ +++ +|+||+|+|+++++++.++ .|++|++||+. +.+|.++ ..|...+++.|++++.+|++. ++
T Consensus 71 ~la~~~g~~~~~--~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~-~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~ 146 (401)
T PRK10874 71 QVAQLLNAPDAK--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVS-EAEHHANLVPWLMVAQQTGAKVVKLPLGA-DR 146 (401)
T ss_pred HHHHHcCCCCCC--EEEEECCHHHHHHHHHHHhhhccCCCcCEEEEC-CcchHHHHHHHHHHHHHhCCEEEEEecCC-CC
Confidence 99999999 555 5999999999999999998 47899998876 3456664 567777888999999999975 56
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEE
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFI 358 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFl 358 (872)
.++.++++++|.. +|+||++++++|.||.++|++. +..|+++|+.+++|++|++|+ .++|+..+++||+
T Consensus 147 ~~d~~~l~~~i~~--------~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~--~~~~~~~~~~d~~ 216 (401)
T PRK10874 147 LPDVDLLPELITP--------RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVH--FPADVQALDIDFY 216 (401)
T ss_pred cCCHHHHHHhcCc--------CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccc--ccCCchhcCCCEE
Confidence 7889999888853 5899999999999999999985 567899999999999999987 6899999999999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++|+||+|| |.|+|+||++++.++.+.|.
T Consensus 217 ~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~ 245 (401)
T PRK10874 217 AFSGHKLYG--PTGIGVLYGKSELLEAMSPW 245 (401)
T ss_pred EEecccccC--CCccEEEEEchHHHhcCCCe
Confidence 999999887 78999999999988888663
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=355.47 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=187.9
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchH-------HHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKG-------TVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~-------~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.+|||+++++|++..|++++.+ ++. ..|+|||+. ..++++|+.||+|+||++.+ |||
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~-------~~~------~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d--IiF 107 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLP-------YLL------EYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD--IVF 107 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHH-------HHH------HhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc--EEE
Confidence 48999999999999999998643 222 246888863 46899999999999999986 999
Q ss_pred eCCHHHHHHHHHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 222 TVSRGSAFKLLAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
|+|||||+|+|+.+++|..++ +|||. +.||.+|..+.+.+++.|++|+++|+. .++.++.+++++.|..
T Consensus 108 ts~ATEs~Nlvl~~v~~~~~~~~~k~iitl-~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~----- 180 (428)
T KOG1549|consen 108 TSGATESNNLVLKGVARFFGDKTKKHIITL-QTEHPCVLDSCRALQEEGLEVTYLPVE-DSGLVDISKLREAIRS----- 180 (428)
T ss_pred eCCchHHHHHHHHHhhccccccccceEEEe-cccCcchhHHHHHHHhcCeEEEEeccC-ccccccHHHHHHhcCC-----
Confidence 999999999999999997776 77776 457899998888899999999999999 5788999999998863
Q ss_pred CCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
+|+||.+++++|++|+++|+++| .+|++.|++||+||||++|+ +++||.++++||+++|+||||| |+|+|+|
T Consensus 181 ---~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~--i~vDV~eln~D~~s~s~HK~yg--p~~iGaL 253 (428)
T KOG1549|consen 181 ---KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGK--IPVDVQELNADFLSISAHKIYG--PPGIGAL 253 (428)
T ss_pred ---CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCC--ccccHHHcCchheeeecccccC--CCcceEE
Confidence 69999999999999999999855 58899999999999999998 8999999999999999999999 7789999
Q ss_pred EEeC-CCcccccCCCCCCCCCe
Q 002866 377 LIKK-SVMGSLQNQSGQTGSGM 397 (872)
Q Consensus 377 yVRk-~~i~~L~P~~~~~GgGt 397 (872)
|||+ .-.-.+.|+. .|||.
T Consensus 254 Yvr~~~~~~~~~p~~--~GGgq 273 (428)
T KOG1549|consen 254 YVRRKRPRLRVEPPL--SGGGQ 273 (428)
T ss_pred EEccCCCcccccCcc--cCCcc
Confidence 9998 3333444553 44443
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=340.90 Aligned_cols=222 Identities=19% Similarity=0.218 Sum_probs=182.6
Q ss_pred HHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHH
Q 002866 138 QLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDI 202 (872)
Q Consensus 138 ~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeA 202 (872)
++|+ +||.+++ .+|||||+++++|+.|++++.+ +.. ..++||++ ...++++
T Consensus 2 ~~~~-~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T TIGR01979 2 NIRA-DFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAE--------YYR-----NSNANVHRGIHTLSVRATEAYEAV 67 (403)
T ss_pred chhh-hCchhcCCCCCCceEEEeCccccCCCHHHHHHHHH--------HHH-----hCCCCCCCCccHHHHHHHHHHHHH
Confidence 3565 6999974 5999999999999999987533 111 12445432 2468899
Q ss_pred HHHHHHhcCCC-CCCCcEEEeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCC
Q 002866 203 KTRIMDHLNIP-ENEYGLVFTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 203 RerIA~lLgA~-~dEY~VVFTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p 277 (872)
|+.||+++|++ ++ +|+||+|+|+|+++++.++. +++|++||+. +.+|.+. ..|...++..|++++.++++.
T Consensus 68 r~~ia~~~~~~~~~--~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~-~~~~~s~~~~~~~~~~~~g~~~~~v~~~~- 143 (403)
T TIGR01979 68 REKVAKFINAASDE--EIVFTRGTTESINLVAYSWGDSNLKAGDEIVIS-EMEHHANIVPWQLLAERTGATLKFIPLDD- 143 (403)
T ss_pred HHHHHHHhCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEEC-cchhhHHHHHHHHHHHhcCcEEEEEecCC-
Confidence 99999999998 44 59999999999999998873 5789998765 3455554 456677778899999999984
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
++.++.+++++.+.. +|++|++++++|.||+++|++.| ..||++|+++++|++|++|+ .++|+..+++|
T Consensus 144 ~~~~~~~~l~~~i~~--------~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~--~~~~~~~~~~d 213 (403)
T TIGR01979 144 DGTLDLDDLEKLLTE--------KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH--MPVDVQALDCD 213 (403)
T ss_pred CCCCCHHHHHHHhcc--------CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc--cccCccccCCC
Confidence 578899999888853 58999999999999999999855 56899999999999999997 68999999999
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|+++|+||+|| |.|+|+||++++.++.+.|.
T Consensus 214 ~~~~s~~K~~g--p~G~g~l~~~~~~~~~~~~~ 244 (403)
T TIGR01979 214 FYVFSGHKMYG--PTGIGVLYGKEELLEQMPPF 244 (403)
T ss_pred EEEEecccccC--CCCceEEEEchHHHhcCCCe
Confidence 99999999987 88999999999888777653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.06 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=173.0
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
|||||++++|+|+.|++++.+ ++. ..++||++ .+.++++|+.+++++|++++ .|+|
T Consensus 1 iYld~a~~~~~~~~v~~a~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~ 65 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLP-------FLI------EHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK--EIIF 65 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHH-------HHH------hCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEE
Confidence 699999999999999998543 111 13456543 35689999999999999876 5999
Q ss_pred eCCHHHHHHHHHhhC-C--CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESY-P--FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaesl-p--f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++.++ . +++|++|++. +.+|+++......+++.|++++.+|+++ ++.++.++++++|..
T Consensus 66 t~~~t~a~~~~l~~~~~~~~~~g~~vl~~-~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~------ 137 (364)
T PLN02651 66 TSGATESNNLAIKGVMHFYKDKKKHVITT-QTEHKCVLDSCRHLQQEGFEVTYLPVKS-DGLVDLDELAAAIRP------ 137 (364)
T ss_pred eCCHHHHHHHHHHHHHHhccCCCCEEEEc-ccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhcCC------
Confidence 999999999887664 2 3678888775 4467776433334457899999999975 578899999988853
Q ss_pred CCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
+|+||++++++|.||+++|++. .+.||++|++++||++|++|+ +++|+.++++||+++|+|||+| |.|+|+||
T Consensus 138 --~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~--~~~~~~~~~~D~~~~s~hK~~g--p~G~g~l~ 211 (364)
T PLN02651 138 --DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGK--IPVDVDDLGVDLMSISGHKIYG--PKGVGALY 211 (364)
T ss_pred --CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCC--cccCcccCCCCEEEechhhhCC--CCceEEEE
Confidence 5899999999999999999985 567899999999999999997 7999999999999999999855 89999999
Q ss_pred EeCCCcccccCC
Q 002866 378 IKKSVMGSLQNQ 389 (872)
Q Consensus 378 VRk~~i~~L~P~ 389 (872)
+|++....+.|.
T Consensus 212 v~~~~~~~l~p~ 223 (364)
T PLN02651 212 VRRRPRVRLEPL 223 (364)
T ss_pred EcCCCCCCCCcc
Confidence 999987777664
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=328.32 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=166.8
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+||||+|++|+|+.|++++.+ ++.. .++||++ ...++++|+.+++++|++++ .|+||
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~i~~t 65 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLP-------YFTE------YFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD--EIIFT 65 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHH-------HHHh------cCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEe
Confidence 699999999999999998543 1211 2355432 35789999999999999876 59999
Q ss_pred CCHHHHHHHHHhhCC--CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCC
Q 002866 223 VSRGSAFKLLAESYP--FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 223 snATeALnLVaeslp--f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
+|+|+|+++++.++- +.+++.|++. +.+|+++..+.+.+++.|++++.+|+++ ++.++.++++++|..
T Consensus 66 ~~~t~a~~~al~~~~~~~~~~~~vv~~-~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g~~~~~~l~~~i~~-------- 135 (379)
T TIGR03402 66 SGGTESDNTAIKSALAAQPEKRHIITT-AVEHPAVLSLCQHLEKQGYKVTYLPVDE-EGRLDLEELRAAITD-------- 135 (379)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCeEEEc-ccccHHHHHHHHHHHHcCCEEEEEccCC-CCcCCHHHHHHhcCC--------
Confidence 999999999888752 3456777665 4466777555555666899999999875 577999999988853
Q ss_pred CceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
+|++|++++++|.||+++|++. ...||++|+++++|++|++|+ .++|+...++||+++|+||++| |.|+|+||+|
T Consensus 136 ~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~g~l~v~ 211 (379)
T TIGR03402 136 DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK--IPIDLKEMNIDMLSLSGHKLHG--PKGVGALYIR 211 (379)
T ss_pred CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc--cccCcccCCCCEEEEcHHHcCC--CCceEEEEEC
Confidence 5899999999999999999985 467899999999999999997 7999999999999999999766 8999999998
Q ss_pred CCC
Q 002866 380 KSV 382 (872)
Q Consensus 380 k~~ 382 (872)
++.
T Consensus 212 ~~~ 214 (379)
T TIGR03402 212 KGT 214 (379)
T ss_pred CCC
Confidence 864
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=322.62 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=167.7
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCC-CCCCCcEEE
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNI-PENEYGLVF 221 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA-~~dEY~VVF 221 (872)
|||||+|++|+++.|++++.+ +.. ..++||++ ...++++|+++++++|+ +++ +|+|
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~--------~~~-----~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~i~~ 65 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDP--------FFC-----DIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLD--DIII 65 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHH--------HHH-----hcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCC--eEEE
Confidence 699999999999999998543 111 13456653 25788999999999998 455 5999
Q ss_pred eCCHHHHHHHHHhhCCC----CCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 222 TVSRGSAFKLLAESYPF----HTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 222 TsnATeALnLVaeslpf----~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
|+|+|+|+++++.++.+ +++ ++|++. +.+|+++......++..|++++.+|++. ++.++.++|++++..
T Consensus 66 t~g~teal~~~~~~~~~~~~~~~~~~~vi~~-~~e~ps~~~~~~~~~~~G~~v~~v~~~~-~g~~d~~~l~~~i~~---- 139 (382)
T TIGR03403 66 TSCATESNNWVLKGVYFDEILKGGKNHIITT-EVEHPAVRATCAFLESLGVEVTYLPINE-QGTITAEQVREAITE---- 139 (382)
T ss_pred eCCHHHHHHHHHHHHHHhhcccCCCCEEEEc-CCccHHHHHHHHHHHHCCCEEEEEecCC-CCCCCHHHHHHhccc----
Confidence 99999999999998743 444 567665 4567777665566777899999999985 578899999888753
Q ss_pred CCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGC 375 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~ 375 (872)
+|++|++++.+|.||+++|++. .+.|+++|+++++|++|.+|+ +++|+.+.++||+++|+|||+| |.|+|+
T Consensus 140 ----~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~g~ 211 (382)
T TIGR03403 140 ----KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGK--IPVDVQKAGVDFLSFSAHKFHG--PKGVGG 211 (382)
T ss_pred ----CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCC--CccCccccCCCEEEEcchhhCC--CCceEE
Confidence 5899999999999999999985 567899999999999999997 6899999999999999999987 889999
Q ss_pred EEEeCCC
Q 002866 376 LLIKKSV 382 (872)
Q Consensus 376 LyVRk~~ 382 (872)
||||++.
T Consensus 212 l~vr~~~ 218 (382)
T TIGR03403 212 LYIRKGV 218 (382)
T ss_pred EEECCCC
Confidence 9999874
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.67 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=172.8
Q ss_pred hHHHHHhhcccCC-----CCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHh
Q 002866 135 KIDQLRANEYLHL-----SPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDH 209 (872)
Q Consensus 135 ~ID~lR~~EFP~L-----~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~l 209 (872)
.++.+|+ +||.+ +.++||||++++|.|+.+++++.+ | +..+...... ..+..+.....+.+.++++ ++
T Consensus 9 ~~~~~r~-~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~---~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~l 81 (406)
T TIGR01814 9 PLRALRD-EFHLPKIGDENAVIYLDGNSLGLMPKAARNALKE---E-LDKWAKIAIR-GHNTGKAPWFTLDESLLKL-RL 81 (406)
T ss_pred hHHHHHH-hcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHH---H-HHHHHHhhhc-cCccCCCChhhhhhhhccc-cc
Confidence 5677886 69988 679999999999999999888643 1 1122211110 0111111112334454556 89
Q ss_pred cCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCC--C-eEEEecccCchhHHH-HHHHHHHcCcEE----EEEeccCCCCcc
Q 002866 210 LNIPENEYGLVFTVSRGSAFKLLAESYPFHTN--K-KLLTMFDYESQSVNW-MAQSAKEKGAKV----YSAWFKWPTLKL 281 (872)
Q Consensus 210 LgA~~dEY~VVFTsnATeALnLVaeslpf~~G--d-~ILT~~DhEHnSVl~-~~~~AkrkGaeV----~~Vpvd~p~g~I 281 (872)
+|+++++ |+||+|+|+++++++.++ ++++ + .|++. +.+|.++.. |...+++.|+++ +.++.++ .+.+
T Consensus 82 ~g~~~~~--v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~-~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~ 156 (406)
T TIGR01814 82 VGAKEDE--VVVMNTLTINLHLLLASF-YKPTPKRYKILLE-AKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE-EETL 156 (406)
T ss_pred cCCCCCc--EEEeCCchHHHHHHHHHh-cCCcCCccEEEec-CCCCChHHHHHHHHHHhcCCCcccceEEeccCC-CCcc
Confidence 9998774 999999999999999997 5543 2 45544 556777654 555677789987 4566553 4678
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEE
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~ 360 (872)
+.+++++.+.. .+++|+||+++|++|.||.++|++. .+.||++|++++||++|++|+ +++|+.+++|||+++
T Consensus 157 ~~~~l~~~~~~-----~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~--~~id~~~~gvD~~~~ 229 (406)
T TIGR01814 157 RLEDILDTIEK-----NGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGN--VPLDLHDWGVDFACW 229 (406)
T ss_pred CHHHHHHHHHh-----cCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCC--cccccccCCCCEEEE
Confidence 88999888853 2357999999999999999999985 567899999999999999998 799999999999999
Q ss_pred cccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|+|||+++ |.| |+||++++....+.|.
T Consensus 230 s~hK~l~g-~pG-~~l~v~~~~~~~~~p~ 256 (406)
T TIGR01814 230 CTYKYLNA-GPG-AGAFVHEKHAHTERPR 256 (406)
T ss_pred cCccccCC-CCC-eEEEEehhhhhhcCCC
Confidence 99999865 449 8899887766556554
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=314.63 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=172.5
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
.+||||++++|+|+.|++++.+ ++.. .++||++ .+.++++|+.||+++|++++ .|+
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~ 68 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMP-------YLTE------KFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR--EIV 68 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHH-------HHHh------cCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEE
Confidence 6999999999999999987532 1111 2455542 25688999999999999876 499
Q ss_pred EeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 221 FTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 221 FTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
||+|+|+|+++++.++. +++|++|++. +.+|.++......+++.|++++.+++++ ++.++.++|+++|..
T Consensus 69 ~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~-~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~----- 141 (402)
T TIGR02006 69 FTSGATESNNLAIKGIAHFYKSKGNHIITS-KTEHKAVLDTCRYLEREGFEVTYLPPKS-NGLIDLEELKAAIRD----- 141 (402)
T ss_pred EeCCHHHHHHHHHHHHHHhhcCCCCEEEEC-CCccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhcCC-----
Confidence 99999999999887753 4678888776 3467777644455567899999999885 578899999888753
Q ss_pred CCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++++|++++++|+||+++|++. ...||++|+++++|++|++|+ +++|+..+++||+++|+||++| |.|+|+|
T Consensus 142 ---~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~G~l 214 (402)
T TIGR02006 142 ---DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGK--IPINVNELKVDLMSISGHKIYG--PKGIGAL 214 (402)
T ss_pred ---CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCC--cccCccccCCCEEEEehhhhcC--CCceEEE
Confidence 4899999999999999999985 567899999999999999997 6999999999999999999887 8999999
Q ss_pred EEeCCCcccccC
Q 002866 377 LIKKSVMGSLQN 388 (872)
Q Consensus 377 yVRk~~i~~L~P 388 (872)
|++++....+.|
T Consensus 215 ~~~~~~~~~~~~ 226 (402)
T TIGR02006 215 YVRRKPRVRLEA 226 (402)
T ss_pred EEccCCCCCCCc
Confidence 999876655544
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=305.22 Aligned_cols=229 Identities=21% Similarity=0.249 Sum_probs=181.6
Q ss_pred HHHHHhhcccCCCC--ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCC-chHHHHHHHHHHHHHhcC
Q 002866 136 IDQLRANEYLHLSP--KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGA-EKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 136 ID~lR~~EFP~L~~--~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNp-sS~~~ieeARerIA~lLg 211 (872)
+.++|+ +||.+++ ++||||++++++|+.+++++.+ .+.....+ ...|... ...+.++++|+.|++++|
T Consensus 3 ~~~~r~-~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~ 74 (397)
T TIGR01976 3 VEAVRG-QFPALADGDRVFFDNPAGTQIPQSVADAVSA-------ALTRSNANRGGAYESSRRADQVVDDAREAVADLLN 74 (397)
T ss_pred hhHHHh-hCCcCCCCCeEEecCCccCCCCHHHHHHHHH-------HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 456786 7999864 6999999999999999988543 12111000 0011111 112568899999999999
Q ss_pred CCCCCCcEEEeCCHHHHHHHHHhhC--CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCCccCHHHHHH
Q 002866 212 IPENEYGLVFTVSRGSAFKLLAESY--PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRK 288 (872)
Q Consensus 212 A~~dEY~VVFTsnATeALnLVaesl--pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~ 288 (872)
++++ .|+||+|+|++++++..++ .+++|++||+. +.+|.++ ..|...+++.|+++..++++.+++.++.+++++
T Consensus 75 ~~~~--~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~-~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 151 (397)
T TIGR01976 75 ADPP--EVVFGANATSLTFLLSRAISRRWGPGDEVIVT-RLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLAS 151 (397)
T ss_pred CCCC--eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEc-CCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHH
Confidence 9865 4999999999999988887 57889998876 3456665 356667788999999999886567889999988
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCC
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFG 367 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG 367 (872)
+|.. +|++|++++++|.||.++|++.| ..||++|+++++|++|++|. .++|+.++++||+++|+|||||
T Consensus 152 ~i~~--------~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~~~d~~~~s~~K~~g 221 (397)
T TIGR01976 152 LLSP--------RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH--GLIDVQATGADFLTCSAYKFFG 221 (397)
T ss_pred hcCC--------CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc--cCCCHHHcCCCEEEEechhhcC
Confidence 8852 58999999999999999999854 67899999999999999986 6889999999999999999998
Q ss_pred CCCCceEEEEEeCCCcccccC
Q 002866 368 FDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 368 ~~PtGvG~LyVRk~~i~~L~P 388 (872)
| ++|+||++++.++.+.+
T Consensus 222 --~-~~G~l~~~~~~~~~l~~ 239 (397)
T TIGR01976 222 --P-HMGILWGRPELLMNLPP 239 (397)
T ss_pred --C-ceEEEEEcHHHHhhCCC
Confidence 5 48999999988776654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=292.13 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=168.5
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++||||++++|+|+.|++++.+ .+.. .++||++ ...++++|+.+|+++|++++ .|+|
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~i~~ 65 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQK-------AASQ------YFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ--GIYF 65 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHH-------HHHh------cCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEE
Confidence 5899999999999999998643 1111 2345442 35789999999999999876 5999
Q ss_pred eCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++.++. .++|+.|++. ..+|.++......++..|++++.+++++ ++.++.++|++.+..
T Consensus 66 ~~g~t~a~~~~~~~~~~~~~~~g~~vv~~-~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~------ 137 (381)
T PRK02948 66 TSGGTESNYLAIQSLLNALPQNKKHIITT-PMEHASIHSYFQSLESQGYTVTEIPVDK-SGLIRLVDLERAITP------ 137 (381)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCCEEEEC-CcccHHHHHHHHHHHhCCCEEEEEeeCC-CCCCCHHHHHHhcCC------
Confidence 9999999998877652 2567887765 4567777665566788899999999875 577899999887742
Q ss_pred CCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
+++||++++++|.||+++|++. .+.|+++|+++++|++|.+|+ +++|+.++++|++++|+||+|| |.|+|++|
T Consensus 138 --~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~--~~~~~~~~~~d~~~~s~~K~~g--p~G~G~l~ 211 (381)
T PRK02948 138 --DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK--LPIDVFEMGIDSLSVSAHKIYG--PKGVGAVY 211 (381)
T ss_pred --CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc--cccCcccCCCCEEEecHHhcCC--CCcEEEEE
Confidence 4789999999999999999985 467899999999999999997 6999999999999999999988 88999999
Q ss_pred EeCCC
Q 002866 378 IKKSV 382 (872)
Q Consensus 378 VRk~~ 382 (872)
++++.
T Consensus 212 ~~~~~ 216 (381)
T PRK02948 212 INPQV 216 (381)
T ss_pred EcCCC
Confidence 98763
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=289.93 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=171.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
.|||||++++|+|+.|++++.+ ++.. ...++|+++ ...++++|+.+|+++|++++ .|+
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~--~v~ 70 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMP-------YLTM----DGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR--EIV 70 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHH-------HHHh----cccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC--eEE
Confidence 5899999999999999987533 1110 013456653 24688999999999999876 499
Q ss_pred EeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 221 FTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 221 FTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
||+|+|+|+++++.++. +.+|++|++. +.+|.++......+++.|++++.++++. ++.+++++|+++|..
T Consensus 71 ~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~-~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~~d~~~l~~~i~~----- 143 (404)
T PRK14012 71 FTSGATESDNLAIKGAAHFYQKKGKHIITS-KTEHKAVLDTCRQLEREGFEVTYLDPQS-NGIIDLEKLEAAMRD----- 143 (404)
T ss_pred EeCCHHHHHHHHHHHHHHhhcCCCCEEEEe-cCccHHHHHHHHHHHhCCCEEEEEccCC-CCcCCHHHHHHhcCC-----
Confidence 99999999999887653 5789998876 4456666544444566899999999985 678899999988853
Q ss_pred CCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
+|++|++++++|+||.++|++. ...||++|+++++|++|++|. .++|+...++||+++|+||++| |.|+|+|
T Consensus 144 ---~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~g~G~l 216 (404)
T PRK14012 144 ---DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGK--VPIDLSKLKVDLMSFSAHKIYG--PKGIGAL 216 (404)
T ss_pred ---CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCC--cccCcccCCCCEEEEehhhccC--CCceEEE
Confidence 5889999999999999999985 467899999999999999997 6889999999999999999887 7899999
Q ss_pred EEeCCCcccccC
Q 002866 377 LIKKSVMGSLQN 388 (872)
Q Consensus 377 yVRk~~i~~L~P 388 (872)
|++++....+.|
T Consensus 217 ~~~~~~~~~~~~ 228 (404)
T PRK14012 217 YVRRKPRVRLEA 228 (404)
T ss_pred EEecCCCCCCCc
Confidence 999876444433
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=281.51 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=165.7
Q ss_pred eecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-Cc---hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 151 VCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AE---KGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 151 IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-ps---S~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
+||||++++ |.|+.+++++.+ .+..+ .....++. +. ....+.++|+.|++++|+++. ..|+||+|+
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~g~ 71 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMAD-------FYKNY-GGSPGRGRYRLALRASREVEETRQLLAKLFNAPSS-AHVVFTNNA 71 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHH-------HHHhc-CCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCC-CeEEEeCCH
Confidence 699999988 688888887532 12111 00001111 11 126788999999999999654 269999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
|+|+++++.++ +++|++|++.. .+|.++. .+...++..|++++.++++. ++.++.++|++++.. ++++
T Consensus 72 t~al~~~~~~~-~~~gd~vl~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~--------~~~~ 140 (376)
T TIGR01977 72 TTALNIALKGL-LKEGDHVITTP-MEHNSVARPLECLKEQIGVEITIVKCDN-EGLISPERIKRAIKT--------NTKL 140 (376)
T ss_pred HHHHHHHHHhc-cCCCCEEEECc-chhhHHHHHHHHHHHHcCcEEEEEecCC-CCCcCHHHHHHhcCC--------CCeE
Confidence 99999999885 67899988753 4566654 45566677799999999875 567899999888742 5899
Q ss_pred EEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 305 FVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
|++++.+|.||.++|++.| ..||++|+++++|++|++|. .++|+...++||+++|+|||+++ |.|+|+||++++.
T Consensus 141 v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~--~~~~~~~~~~D~~~~s~~K~l~~-p~g~g~l~~~~~~ 216 (376)
T TIGR01977 141 IVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV--IPIDMTELAIDMLAFTGHKGLLG-PQGTGGLYIREGI 216 (376)
T ss_pred EEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCc--cCCCchhcCCCEEEecccccccC-CCCceEEEEcCCc
Confidence 9999999999999999854 57899999999999999997 69999999999999999999888 9999999999976
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=290.80 Aligned_cols=208 Identities=14% Similarity=0.039 Sum_probs=162.3
Q ss_pred ccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 144 YLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 144 FP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
.|.+.+ ++|||+|.+++.|..|++++.+ .+. ...+..+...+.++++|+.++++||++ ++|+|+||
T Consensus 6 ~~~~~~~~~~f~~Gp~~~~~~~v~~a~~~-------~~~-----~~~hr~~~f~~~~~~~r~~l~~l~~~~-~~~~v~~~ 72 (378)
T PRK03080 6 IPALRPADPRFSSGPCKKRPGWQLEALAD-------ALL-----GRSHRQKPVKALLKRVIEGTRELLSLP-EGYEVGIV 72 (378)
T ss_pred CCCcCCCCCCcCCCCcCCChHHHHHHHHh-------hhc-----ccCcCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEE
Confidence 455555 8999999999999888887532 010 011223445689999999999999995 34679999
Q ss_pred C-CHHHHHHHHHhhCCCCC-CCeEEEecccCchhHHHHHH-HHHHcCc-EEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 223 V-SRGSAFKLLAESYPFHT-NKKLLTMFDYESQSVNWMAQ-SAKEKGA-KVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 223 s-nATeALnLVaeslpf~~-Gd~ILT~~DhEHnSVl~~~~-~AkrkGa-eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
+ |+|.|++.++.++ +++ ++.+++..+| .+ .|.. .+++.|+ +++.+++++ +..++.++ +.
T Consensus 73 ~gs~T~~~~~~~~~l-~~~~~~~vi~~g~f--~~--~~~~~~~~~~g~~~v~~~~~~~-g~~~d~~~----i~------- 135 (378)
T PRK03080 73 PGSDTGAWEMALWSL-LGARRVDHLAWESF--GS--KWATDVVKQLKLEDPRVLEADY-GSLPDLSA----VD------- 135 (378)
T ss_pred CCchHHHHHHHHHhc-CCCCcceEEEeCHH--HH--HHHHHHHhhcCCCCceEeccCC-CCCCCHhh----cC-------
Confidence 6 9999999999998 554 4445554444 33 3444 3467899 999999876 34566554 22
Q ss_pred CCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
.+++|+++|++|.||+++|++.|.. |++|+.++|||+|++|+ +++|+.+ +||+++|+|||||+ |.|+|+||+
T Consensus 136 --~~~~V~~~h~~t~tG~~~pi~~I~~-~~~g~~~vVDa~qs~G~--~pidv~~--iD~~~~s~~K~l~~-P~G~g~l~v 207 (378)
T PRK03080 136 --FDRDVVFTWNGTTTGVRVPVARWIG-ADREGLTICDATSAAFA--LPLDWSK--LDVYTFSWQKVLGG-EGGHGMAIL 207 (378)
T ss_pred --CCCCEEEEecCCccceeccchhhcc-ccCCCeEEEeccccccc--CCCCHHH--CcEEEEehhhhCCC-CCceEEEEE
Confidence 1567999999999999999987666 88999999999999998 7999986 79999999999988 899999999
Q ss_pred eCCCcccccCC
Q 002866 379 KKSVMGSLQNQ 389 (872)
Q Consensus 379 Rk~~i~~L~P~ 389 (872)
+++.++.++|.
T Consensus 208 ~~~~~~~~~p~ 218 (378)
T PRK03080 208 SPRAVERLESY 218 (378)
T ss_pred CHHHHHhhhcc
Confidence 99998888764
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=278.71 Aligned_cols=210 Identities=19% Similarity=0.168 Sum_probs=173.1
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCC-CCCCcEE
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIP-ENEYGLV 220 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~-~dEY~VV 220 (872)
+||||++++++|+.+++++++ ++.. .++||++ ...++++|+.+++++|++ ++ .|+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~v~ 65 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVD-------YYRH------YNANVHRGVHELSARATDAYEAAREKVARFINAPSPD--EII 65 (373)
T ss_pred CcccCccccCCCHHHHHHHHH-------HHHh------cCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEE
Confidence 699999999999999998643 1111 2344432 357889999999999997 43 599
Q ss_pred EeCCHHHHHHHHHhhCCCC--CCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 221 FTVSRGSAFKLLAESYPFH--TNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~--~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
||+|+|+|+++++.++... +|++||+. +.+|.++. .+...++..|++++.+++++ ++.++.++|+++|..
T Consensus 66 ~~~g~t~a~~~~~~~l~~~~~~g~~vl~~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~----- 138 (373)
T cd06453 66 FTRNTTEAINLVAYGLGRANKPGDEIVTS-VMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQLDLEALEKLLTE----- 138 (373)
T ss_pred EeCCHHHHHHHHHHHhhhcCCCCCEEEEC-cchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCcCHHHHHHHhcC-----
Confidence 9999999999999998764 78898876 34566653 45556667899999999985 578999999988853
Q ss_pred CCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++++|++++++|.||.++|++ ++..|+++|+++++|+++..|. .++++..+++|++++|+||||| |.|+|++
T Consensus 139 ---~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~--~~g~g~~ 211 (373)
T cd06453 139 ---RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH--MPVDVQDLGCDFLAFSGHKMLG--PTGIGVL 211 (373)
T ss_pred ---CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCc--eeeeccccCCCEEEeccccccC--CCCcEEE
Confidence 588999999999999999997 5667899999999999999887 6888888999999999999999 4699999
Q ss_pred EEeCCCcccccCC
Q 002866 377 LIKKSVMGSLQNQ 389 (872)
Q Consensus 377 yVRk~~i~~L~P~ 389 (872)
+++++.++.+++.
T Consensus 212 ~~~~~~~~~~~~~ 224 (373)
T cd06453 212 YGKEELLEEMPPY 224 (373)
T ss_pred EEchHHhhcCCCe
Confidence 9999988877753
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=278.42 Aligned_cols=203 Identities=16% Similarity=0.215 Sum_probs=144.5
Q ss_pred cCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CC---CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC-HHHHH
Q 002866 155 YCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY-GG---AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS-RGSAF 229 (872)
Q Consensus 155 yAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gN---psS~~~ieeARerIA~lLgA~~dEY~VVFTsn-ATeAL 229 (872)
++|.++.|+.|++++.+ + +..+. +... ..| -+ +...+.++++|+.+++|||++ ++|.||||+| +|+|+
T Consensus 4 ~pGp~~~p~~V~~a~~~---~-~~~~~-~~~r-g~~~~~~r~~~~~~~~~~~r~~l~~l~~~~-~~~~vvf~~gs~T~a~ 76 (355)
T cd00611 4 SAGPAALPEEVLEQAQK---E-LLDFN-GLGM-SVMEMSHRSKDFEAIVNEAESDLRELLNIP-DNYKVLFLQGGATGQF 76 (355)
T ss_pred CCCCCCCCHHHHHHHHH---H-Hhhcc-cCCc-cccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHH
Confidence 46788899999998643 1 00111 1110 001 01 223478999999999999984 3568999999 99999
Q ss_pred HHHHhhC--CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCcc-CHHHHH-HHHhhhhccCCCCCceEE
Q 002866 230 KLLAESY--PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKL-CSTDLR-KQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 230 nLVaesl--pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~I-d~edLe-~~I~~~~rr~~~~~T~LV 305 (872)
++++.++ +++++++|++. .++|. +.+.+++.|+++++++++.. +.+ +..++. ..+ +++|++|
T Consensus 77 ~~~~~~l~~~~~~~~~i~~g-~~~~~----~~~~a~~~g~~~~~~~~~~~-g~~~~~~~~~~~~~--------~~~~~lV 142 (355)
T cd00611 77 AAVPLNLLGDKGTADYVVTG-AWSAK----AAKEAKRYGGVVVIVAAKEE-GKYTKIPDVETWDL--------APDAAYV 142 (355)
T ss_pred HHHHHhcCCCCCeEEEEECC-HHHHH----HHHHHHhcCCCcEEEecccc-cCCCCCCCHhhcCC--------CCCCCEE
Confidence 9999998 33456666543 23333 35677889999999998632 222 322222 122 2468999
Q ss_pred EEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccc
Q 002866 306 VFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGS 385 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~ 385 (872)
+++|++|.||++++ ..++.+|+.++|||+|++|+ .++|++++++ +++|+||+|| |.|+|+||+|++.++.
T Consensus 143 ~~~h~~t~tG~~~~----~i~~~~g~~~~VDa~qs~g~--~~idv~~~~~--~~ss~~K~lG--P~G~g~l~~~~~~~~~ 212 (355)
T cd00611 143 HYCSNETIHGVEFD----EVPDTGGVPLVADMSSNILS--RPIDVSKFGV--IYAGAQKNLG--PAGVTVVIVRKDLLGK 212 (355)
T ss_pred EEeCCcccccEEcc----eecccCCCeEEEEccccccC--CCCCHHHhCE--EEeecccccC--CCceEEEEECHHHHhh
Confidence 99999999999854 23345999999999999998 7999998765 4477999997 7899999999998876
Q ss_pred ccC
Q 002866 386 LQN 388 (872)
Q Consensus 386 L~P 388 (872)
++|
T Consensus 213 ~~~ 215 (355)
T cd00611 213 ARK 215 (355)
T ss_pred ccc
Confidence 654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=265.19 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=166.6
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
||||++++|+|+.|++++.+ ++.. .++||++ .+.++++|+.+|+++|++++ +|+||
T Consensus 1 yld~a~~~~~~~~v~~a~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~~ 65 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLP-------WLLE------EFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE--EVIFT 65 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHH-------HHHh------cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEe
Confidence 99999999999999998643 1211 2345542 25688999999999999876 49999
Q ss_pred CCHHHHHHHHHhhCC---CCCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 223 VSRGSAFKLLAESYP---FHTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 223 snATeALnLVaeslp---f~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
+|+|+|+++++.++. +.+| +.|++. +.+|+++......++..|++++.+++++ ++.++.++|++++..
T Consensus 66 ~g~t~a~~~~l~~l~~~~~~~g~~~vi~~-~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~l~~~l~~------ 137 (353)
T TIGR03235 66 SGATESNNLAILGLARAGEQKGKKHIITS-AIEHPAVLEPIRALERNGFTVTYLPVDE-SGRIDVDELADAIRP------ 137 (353)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCeeeEc-ccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhCCC------
Confidence 999999999888763 2456 556554 5567777654455677899999999986 577899999887742
Q ss_pred CCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
+|++|++++++|.||.++|++ +++.|+++|+++++|++|++|. +++|+.+.++||+++|+|||+| |.|+|+||
T Consensus 138 --~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~g~g~l~ 211 (353)
T TIGR03235 138 --DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK--ITVDLSADRIDLISCSGHKIYG--PKGIGALV 211 (353)
T ss_pred --CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCC--ccccccccCCCEEEeehhhcCC--CCceEEEE
Confidence 589999999999999999997 4577899999999999999997 7999999999999999999976 88999999
Q ss_pred EeCCCc
Q 002866 378 IKKSVM 383 (872)
Q Consensus 378 VRk~~i 383 (872)
++++..
T Consensus 212 ~~~~~~ 217 (353)
T TIGR03235 212 IRKRGK 217 (353)
T ss_pred EccCcc
Confidence 998754
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=248.27 Aligned_cols=218 Identities=10% Similarity=0.037 Sum_probs=176.7
Q ss_pred cCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 145 LHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 145 P~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
-.+++..||...|-+++++.|++++.+. +. .+..+...+.++++|+.+++++|++++ +.++||.+
T Consensus 4 ~~~~~~~~l~~pGP~~~~~~V~~a~~~~-----------~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~vi~~~~ 68 (401)
T PLN02409 4 VYAPGRNHLFVPGPVNIPERVLRAMNRP-----------NE---DHRSPAFPALTKELLEDVKYIFKTKSG-TPFIFPTT 68 (401)
T ss_pred ccCCCCceeccCCCCCCCHHHHHHhcCC-----------CC---CCCCHHHHHHHHHHHHHHHHHhCCCCC-CEEEEeCC
Confidence 3445677899999999999999875321 11 123444467899999999999999753 47999999
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
+|+++..++.++ +++||+||+.. .+|.+.. |.+.+++.|++++.+++++. ..++.+++++++.... .+++++
T Consensus 69 gt~a~~~a~~~~-~~~Gd~Vlv~~-~~~~~~~-~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~l~~~~----~~~~k~ 140 (401)
T PLN02409 69 GTGAWESALTNT-LSPGDKVVSFR-IGQFSLL-WIDQMQRLNFDVDVVESPWG-QGADLDILKSKLRQDT----NHKIKA 140 (401)
T ss_pred cHHHHHHHHHhc-CCCCCEEEEeC-CCchhHH-HHHHHHHcCCceEEEECCCC-CCCCHHHHHHHHhhCc----CCCccE
Confidence 999999888775 78999987663 4555543 56778889999999999874 3478999999886410 126899
Q ss_pred EEEeCccCcccchhcHHH-HHH--HHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 305 FVFPVQSRVTGAKYSYQW-MAL--AQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe~-I~~--Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
|+++|.+|.||.++|++. .+. ||++|+++++|++|++|. +++|+.++++||+++|+||||++ |.|+|+||++++
T Consensus 141 v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~--~~id~~~~~~D~~~~s~~K~l~~-P~G~G~l~~~~~ 217 (401)
T PLN02409 141 VCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA--LDFRMDEWGVDVALTGSQKALSL-PTGLGIVCASPK 217 (401)
T ss_pred EEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC--ccccccccCccEEEEcCccccCc-CCCcceeEECHH
Confidence 999999999999999984 456 899999999999999997 79999999999999999999987 889999999999
Q ss_pred CcccccC
Q 002866 382 VMGSLQN 388 (872)
Q Consensus 382 ~i~~L~P 388 (872)
.++.+.+
T Consensus 218 ~~~~~~~ 224 (401)
T PLN02409 218 ALEASKT 224 (401)
T ss_pred HHHHHhc
Confidence 8777654
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=243.96 Aligned_cols=205 Identities=13% Similarity=0.021 Sum_probs=157.5
Q ss_pred CCCceecccCC--------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch----HHHHHHHHHHHHHhcCCC-
Q 002866 147 LSPKVCLDYCG--------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK----GTVEHDIKTRIMDHLNIP- 213 (872)
Q Consensus 147 L~~~IYLDyAA--------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS----~~~ieeARerIA~lLgA~- 213 (872)
+...+||||++ ++++.+.+.+.+.. .+.. .++||++ .++++++|+.+|++||++
T Consensus 31 ~~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~-------~l~~------~~~np~s~~~~~~le~~~~~~la~llg~~~ 97 (431)
T TIGR01788 31 IHDELSLDGNPRLNLATFVTTWMEPEARKLMDE-------TINK------NMIDKDEYPQTAEIENRCVNMLADLWHAPA 97 (431)
T ss_pred HHHHhhhcCCcceeeeeeeCCCCCHHHHHHHHH-------HHhc------CCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 44478999999 88887777665322 1221 3456553 478999999999999998
Q ss_pred C-CCCcEEE--eCCHHHHHHHHHhhCCC-------CCC-----CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 214 E-NEYGLVF--TVSRGSAFKLLAESYPF-------HTN-----KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 214 ~-dEY~VVF--TsnATeALnLVaeslpf-------~~G-----d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
+ ++ ++| |+|+|||+++.+.+... +.| ..|+++ +.+|.++. +.++..|++++.+|++..+
T Consensus 98 ~~~~--~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s-~~~H~sv~---ka~~~lg~~v~~i~~d~~~ 171 (431)
T TIGR01788 98 KDAE--AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMG-SNVQVCWE---KFARYFDVELREVPMDPGR 171 (431)
T ss_pred CCCC--CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEc-CcchHHHH---HHHHHcCceeEEEecCCCc
Confidence 3 34 666 79999999987654321 112 235544 66788765 4456679999999998644
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHC------CcEEEeecccc-------CCCC
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQN------HWHVLLDAGSL-------GPKD 344 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~------G~~VLVDAAQ~-------aG~~ 344 (872)
+.++.++|+++|.+ +|.||++++++|+||+++|++. ...|+++ |+++||||||. .++
T Consensus 172 ~~vd~~~L~~~i~~--------~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~- 242 (431)
T TIGR01788 172 YVIDPEQVVEAVDE--------NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD- 242 (431)
T ss_pred eeeCHHHHHHHHhh--------CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC-
Confidence 68999999999964 4889999999999999999985 5677888 89999999999 554
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+++|+...++|++++|+|||+.+ |.|+|+||+|+.
T Consensus 243 -~~~~~~~~~~DSis~s~HK~~~~-P~g~G~l~~r~~ 277 (431)
T TIGR01788 243 -LEWDFRLPRVKSINVSGHKYGLV-YPGVGWVIWRDE 277 (431)
T ss_pred -chhhcCCCCceEEEECchhccCC-CCCcEEEEEeCh
Confidence 56777767888899999999745 999999999986
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=232.47 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=162.3
Q ss_pred cCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh
Q 002866 155 YCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE 234 (872)
Q Consensus 155 yAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae 234 (872)
+++..++|+.+++++.+ .+. .+..+...+.++++|+.+++++|+++ ++.++||.|+|+|+++++.
T Consensus 4 ~~~~~~~~~~v~~a~~~-----------~~~---~~~~~~~~~~~~~~~~~la~~~g~~~-~~~~~~~~~~t~al~~~~~ 68 (356)
T cd06451 4 IPGPSNVPPRVLKAMNR-----------PML---GHRSPEFLALMDEILEGLRYVFQTEN-GLTFLLSGSGTGAMEAALS 68 (356)
T ss_pred cCCCcCCCHHHHHHhCC-----------Ccc---CCCCHHHHHHHHHHHHHHHHHhcCCC-CCEEEEecCcHHHHHHHHH
Confidence 45666788888887532 111 12344445778999999999999954 3468899999999999999
Q ss_pred hCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc
Q 002866 235 SYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT 314 (872)
Q Consensus 235 slpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT 314 (872)
++. .+|++||+... .|.+. .+...++..|++++.+|++. ++.++.+++++.+.+ .++++|.+++.+|.+
T Consensus 69 ~~~-~~g~~vl~~~~-~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~-------~~~~~v~i~~~~~~~ 137 (356)
T cd06451 69 NLL-EPGDKVLVGVN-GVFGD-RWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQ-------HDIKAVTLTHNETST 137 (356)
T ss_pred HhC-CCCCEEEEecC-CchhH-HHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhc-------cCCCEEEEeccCCCc
Confidence 984 68999887643 33332 24456777899999999875 467899999988863 147899999999999
Q ss_pred cchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 315 GAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 315 G~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|.++|++.| ..|+++|+++++|++|++|. .++++...++|++++|+|||||+ |.|+|+|+++++.++.+.
T Consensus 138 G~~~~~~~i~~~a~~~~~~li~D~~~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 138 GVLNPLEGIGALAKKHDALLIVDAVSSLGG--EPFRMDEWGVDVAYTGSQKALGA-PPGLGPIAFSERALERIK 208 (356)
T ss_pred ccccCHHHHHHHHHhcCCEEEEeeehhccC--ccccccccCccEEEecCchhccC-CCCcceeEECHHHHHHHH
Confidence 999999855 57799999999999998886 58888888999999999999998 899999999988766554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=227.37 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=148.6
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+.....++++|+.+++++|+++++..|+||+|+|+|++.++.++. .+|+++++..+..+.. .+...+++.|++++.+
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~-~~~~~vlv~~~~~~~~--~~~~~a~~~g~~~~~v 107 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV-PKDGKLLVVINGAYGA--RIVQIAEYLGIPHHVV 107 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC-CCCCeEEEEeCChhhH--HHHHHHHHcCCceEEE
Confidence 344578899999999999997643369999999999999999985 4666654433333332 1346678899999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS 351 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs 351 (872)
++++ ++.++.+++++++... +++++|++++++|.||+++|++ +++.||++|+.+++|++|++|. .++|+.
T Consensus 108 ~~~~-~~~~d~~~l~~~l~~~------~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~--~~~~~~ 178 (363)
T TIGR02326 108 DTGE-VEPPDVVEVEAILAAD------PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGG--IPIDIA 178 (363)
T ss_pred eCCC-CCCCCHHHHHHHHhhC------CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccC--cccchh
Confidence 9875 5678999999988642 3467899999999999999997 4577899999999999999987 699999
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
++++||+++|+|||+++ |.|+|+||++++.++.+
T Consensus 179 ~~~~D~~~~s~~K~l~~-p~G~G~l~~~~~~~~~~ 212 (363)
T TIGR02326 179 ELHIDYLISSANKCIQG-VPGFGFVIARQAELAAC 212 (363)
T ss_pred hcCccEEEecCcccccc-CCcceEEEECHHHHHHh
Confidence 99999999999999877 88999999998876544
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=235.99 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=130.1
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCcEEEe-CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHH---cCc
Q 002866 192 GAEKGTVEHDIKTRIMDHLNIPENEYGLVFT-VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKE---KGA 267 (872)
Q Consensus 192 NpsS~~~ieeARerIA~lLgA~~dEY~VVFT-snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akr---kGa 267 (872)
.+...+.++++|++++++||+++ +|+|+|| .|+|.|++.++.++..+++ -+++..++-+ .|...++. .+
T Consensus 36 ~~~f~~~~~~~r~~l~~l~~~~~-~~~v~f~~gs~T~a~~~~~~~l~~~~~-l~i~~G~~~~----~~~~~a~~~~~~~- 108 (361)
T TIGR01366 36 QAPVKNLVGRVREGLAELFSLPD-GYEVILGNGGATAFWDAATFGLIEKKS-LHLSFGEFSS----KFAKAVKLAPWLG- 108 (361)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCC-CceEEEECCchhHHHHHHHHhcccccc-cEEecCHHHH----HHHHHHHhhhccC-
Confidence 44456899999999999999964 4689997 5599999999999853322 2333333321 22233332 33
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++..+++++. ..++. .+ ++++++|+++|++|.||+++|++.| +|++|+.++|||+|++|+ .+
T Consensus 109 ~~~~~~~~~~-~~~~~-----~~--------~~~~~lV~~~h~et~tG~~~pi~~I--~~~~g~~~iVDavqs~g~--~~ 170 (361)
T TIGR01366 109 EPIIVTADPG-SAPEP-----QA--------DPGVDVIAWAHNETSTGVAVPVRRP--EGSDDALVVIDATSGAGG--LP 170 (361)
T ss_pred CceEEecCCC-CCCCC-----cc--------CCCCCEEEEcccCCccceecccccc--cccCCCeEEEEcCccccC--CC
Confidence 7788887763 22222 11 2469999999999999999999866 588999999999999998 69
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
+|+++ +||+++|+||+||+ |.|++++|++++.++.+++.
T Consensus 171 idv~~--~D~~~~s~~K~lg~-~~Gl~~~~~s~~~~~~~~~~ 209 (361)
T TIGR01366 171 VDIAE--TDVYYFAPQKNFAS-DGGLWLAIMSPAALERIEAI 209 (361)
T ss_pred CCHHH--CCEEEEEchhhcCC-CCceEEEEECHHHHhhhhcc
Confidence 99985 89999999999997 78999999999998887754
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=232.74 Aligned_cols=164 Identities=17% Similarity=0.274 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCC-HHHHHHHHHhhCCCCCCCeEEEe--cccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVS-RGSAFKLLAESYPFHTNKKLLTM--FDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsn-ATeALnLVaeslpf~~Gd~ILT~--~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
++++++|+.+.++||++ ++|.|+|++| +|+|++.++.++. .+|++++.. ..+.| .|.+.|++.|+ +..+.
T Consensus 37 ~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~-~~~~~~l~i~~G~fg~----r~~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 37 AVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLL-AEGKVADYIVTGAWSK----KAAKEAKKYGV-VNVVA 109 (349)
T ss_pred HHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcC-CCCCeEEEEECCHHHH----HHHHHHHHhCC-cEEEe
Confidence 78999999999999984 4578999977 9999999999984 367775432 22332 45788899999 77777
Q ss_pred cc----CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCC
Q 002866 274 FK----WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLG 349 (872)
Q Consensus 274 vd----~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLD 349 (872)
.+ |. -.+++++++ + .+++++|+++|..+.||+.+| ..++.++++++|||+|++|+ .++|
T Consensus 110 ~~~~~~~~-~~~~~~~~~--~--------~~~~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~g~--~~id 172 (349)
T TIGR01364 110 SGKEGNYT-KIPDPSTWE--I--------SEDAAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNILS--RPID 172 (349)
T ss_pred ccccCCCC-CCCCHHhcC--C--------CCCCCEEEEcCCCCcccEecc----eecccCCCeEEEEccccccC--ccCC
Confidence 53 31 123444332 1 135899999999999999988 44566799999999999998 6999
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++++ ||+++|+||+|| |.|+|+||++++.++.++|
T Consensus 173 ~~~~--d~~~~ssqK~lg--P~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 173 VSKF--GLIYAGAQKNIG--PAGLTVVIVRKDLLGRASR 207 (349)
T ss_pred HHHc--cEEEEecccccC--CCceEEEEECHHHHhhccc
Confidence 9875 699999999998 7899999999998877654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=235.45 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=145.7
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc--CCCch--------HHHHH-HHHHHHHHhcCCCCCCCcEEEe--
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY--GGAEK--------GTVEH-DIKTRIMDHLNIPENEYGLVFT-- 222 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y--gNpsS--------~~~ie-eARerIA~lLgA~~dEY~VVFT-- 222 (872)
++-..+|+.|++++.. .+. ..| |||++ .+.++ .+|++++++||+++++ ++||
T Consensus 41 ~sen~~s~~v~~~~~~-------~l~------~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~--~~~~~~ 105 (452)
T PTZ00094 41 ASENFTSRAVLECLGS-------CFT------NKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEE--WGVNVQ 105 (452)
T ss_pred cccccCCHHHHHHhcc-------hhh------ccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCccc--ceeecC
Confidence 6667788888886422 111 134 77764 25666 4999999999998765 7788
Q ss_pred -CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHH-------cCcEEEEEeccCCCCccCHHHHHHHHhhhh
Q 002866 223 -VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKE-------KGAKVYSAWFKWPTLKLCSTDLRKQISSKK 294 (872)
Q Consensus 223 -snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akr-------kGaeV~~Vpvd~p~g~Id~edLe~~I~~~~ 294 (872)
+++|+|+++++.++ +++|++||+. +.+|+++.......++ .++++...+++. ++.++.++|++++...
T Consensus 106 ~~sgt~an~~v~~al-~~~gd~Ii~~-~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~id~~~L~~~l~~~- 181 (452)
T PTZ00094 106 PYSGSPANFAVYTAL-LQPHDRIMGL-DLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAF- 181 (452)
T ss_pred CCchHHHHHHHHHHh-cCCCCEEEec-ccccCCcccccccccccccccceeeeeeeecccCC-CCCcCHHHHHHHHHHh-
Confidence 89999999999998 7899998875 5678877543211111 124444555654 4889999999998642
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCC---CCCcEEEEcccccCCCCC
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSL---FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~---l~~DFlv~S~HK~fG~~P 370 (872)
+++++++. . +.+|.++|++.| ++||++|++++||++|++|+ ++.|+.. .++||+++|+||||++ |
T Consensus 182 ------~~~lvi~~-~-s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~--i~~~~~~~~~~~~D~l~~S~hK~l~G-P 250 (452)
T PTZ00094 182 ------RPKLIIAG-A-SAYPRDIDYKRFREICDSVGAYLMADIAHTSGL--VAAGVLPSPFPYADVVTTTTHKSLRG-P 250 (452)
T ss_pred ------CCCEEEEe-C-CCCCCccCHHHHHHHHHHcCCEEEEeccchhcc--ccCCCCCCCCCCCcEEEcCCccCCCC-C
Confidence 35676664 3 469999999855 57899999999999999997 6666532 3699999999999877 9
Q ss_pred CceEEEEEeCCCcc
Q 002866 371 TGFGCLLIKKSVMG 384 (872)
Q Consensus 371 tGvG~LyVRk~~i~ 384 (872)
.| |+||++++..+
T Consensus 251 ~G-g~l~~~~~~~~ 263 (452)
T PTZ00094 251 RS-GLIFYRKKVKP 263 (452)
T ss_pred Cc-eEEEEecccch
Confidence 99 88888876543
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=235.37 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=143.1
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHH-HhhccC-cCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH-H
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEIT-ANLSNH-ALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS-A 228 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~-~nL~~~-~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe-A 228 (872)
+|=++|.+++|+.|++++.+. + ..+. ..+..+ ..+..+...++++++|+.++++||++ ++|.|+|++|+++ |
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~--~--~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~ 79 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQE--L--LDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQ 79 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHH--h--hccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHH
Confidence 444688899999999985431 0 0000 000000 00111222479999999999999984 4567888855555 5
Q ss_pred HHHHHhhCCCCCCCeEEEe--cccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHH-HHhhhhccCCCCCceEE
Q 002866 229 FKLLAESYPFHTNKKLLTM--FDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRK-QISSKKRRKKDSAAGLF 305 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~--~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~-~I~~~~rr~~~~~T~LV 305 (872)
+..+..++- .+|++++.. ..++| .|.+.+++.|.. ..++.++..+..+..++++ .|. .++++|
T Consensus 80 ~Ea~~~nl~-~~g~~~l~i~~G~fg~----r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~--------~~~~~V 145 (360)
T PRK05355 80 FAMVPMNLL-GGGKKADYVDTGSWSK----KAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS--------DDAAYV 145 (360)
T ss_pred HHHHHHhcC-CCCCeEEEEECCHHHH----HHHHHHHHhCCc-eEEecccccCCCCCCChhhccCC--------CCCCEE
Confidence 666655552 356664322 22333 457788888975 6666653234555555554 443 247899
Q ss_pred EEeCccCcccchh-cHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 306 VFPVQSRVTGAKY-SYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 306 a~p~vSNvTG~i~-PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
+++|..+.||+++ ||..+ +|+.++|||+|++|+ .++|++++ ||+++|+||+|| |.|+|+||++++.++
T Consensus 146 ~~th~eTstGv~~~~i~~i-----~g~l~vVDavss~g~--~~idv~~~--d~~~~ssqK~lg--P~Glg~l~~s~~~l~ 214 (360)
T PRK05355 146 HYTSNETIDGTEFHELPDT-----GDVPLVADMSSDILS--RPIDVSKF--GLIYAGAQKNIG--PAGLTIVIVREDLLG 214 (360)
T ss_pred EEccCCCcceEecCccccc-----CCCcEEEEcCccccC--ccCCHHHc--cEEEEecccccc--CCceEEEEECHHHHh
Confidence 9999999999999 77655 899999999999998 69999875 799999999997 789999999999987
Q ss_pred cccC
Q 002866 385 SLQN 388 (872)
Q Consensus 385 ~L~P 388 (872)
.+.|
T Consensus 215 ~~~~ 218 (360)
T PRK05355 215 RALP 218 (360)
T ss_pred hccc
Confidence 7765
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=205.40 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=148.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+...+.++++|+.+++++|++++...|+||.|+|+|+++++.++. .+|+++++....... . .+...+++.|+++..+
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~~-~-~~~~~~~~~g~~~~~i 109 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAYG-A-RIAQIAEYLGIAHVVL 109 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCchH-H-HHHHHHHHcCCcEEEE
Confidence 334468899999999999997644468899999999999999986 467776654332211 1 2356678899999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS 351 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs 351 (872)
|.++ ++.++.+++++++... +++++|.+++.+|.||.++|++ +...||++|+.+++|++|..|. .++|+.
T Consensus 110 ~~~~-~~~~d~~~l~~~l~~~------~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~--~~~~~~ 180 (368)
T PRK13479 110 DTGE-DEPPDAAEVEAALAAD------PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGA--IPIDIA 180 (368)
T ss_pred ECCC-CCCCCHHHHHHHHHhC------CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCC--cccccc
Confidence 9976 4568999999988642 3578999999999999999997 4567899999999999999886 589999
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+++|++++|+|||+++ |.|+|++|++++.++.+.
T Consensus 181 ~~~~d~~v~s~~K~l~g-~~G~G~l~~~~~~~~~~~ 215 (368)
T PRK13479 181 ELGIDALISSANKCIEG-VPGFGFVIARRSELEACK 215 (368)
T ss_pred ccCceEEEecCcccccc-CCCceEEEECHHHHHHhh
Confidence 99999999999998766 889999999998776554
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=200.94 Aligned_cols=217 Identities=14% Similarity=0.058 Sum_probs=153.6
Q ss_pred HHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCC
Q 002866 136 IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPEN 215 (872)
Q Consensus 136 ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~d 215 (872)
+..+|++++|.- .+|+.+.+.+.| .+++++.+ .+..+......+ +.....++++|+.+++++|+++.
T Consensus 11 ~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~a~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~~~~ 77 (371)
T PRK13520 11 LEEYRSEDLKYE---RILSSMCTEPHP-IARKAHEM-------FLETNLGDPGLF--PGTAKLEEEAVEMLGELLHLPDA 77 (371)
T ss_pred HHHHHhcCCCHH---HeeeeeecCchH-HHHHHHHH-------HHhcCCCCcccC--ccHHHHHHHHHHHHHHHhCCCCC
Confidence 334455555543 358877666554 45565432 121111111111 23446678999999999999754
Q ss_pred CCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhh
Q 002866 216 EYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISS 292 (872)
Q Consensus 216 EY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~ 292 (872)
.++||+++|+|+.+++..+ .++++++|++. +.+|.+ |.+.++..|++++.+|.++ ++.++.++|+++|..
T Consensus 78 --~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~-~~~h~s---~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~ 150 (371)
T PRK13520 78 --YGYITSGGTEANIQAVRAARNLAKAEKPNIVVP-ESAHFS---FDKAADMLGVELRRAPLDD-DYRVDVKAVEDLIDD 150 (371)
T ss_pred --CeEEecCcHHHHHHHHHHHHhhccCCCceEEec-CcchHH---HHHHHHHcCceEEEecCCC-CCcCCHHHHHHHHhh
Confidence 4899999999988876543 34467788776 445665 4456677899999999876 567899999998863
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC-----CCccCCCCCCCCcEEEEcccccC
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK-----DMDSLGLSLFRPDFIITSFYRVF 366 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~-----~mipLDLs~l~~DFlv~S~HK~f 366 (872)
++.+|++.+.+|.||.+.|++. .+.|+++|++++||++|.++. ....+|+...++|++++|+|||.
T Consensus 151 --------~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~ 222 (371)
T PRK13520 151 --------NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMG 222 (371)
T ss_pred --------CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCcccc
Confidence 3677778888899999999985 567899999999999987542 00125666678999999999997
Q ss_pred CCCCCceEEEEEeCC
Q 002866 367 GFDPTGFGCLLIKKS 381 (872)
Q Consensus 367 G~~PtGvG~LyVRk~ 381 (872)
++ |.++|++++++.
T Consensus 223 ~a-~~~~G~~~~~~~ 236 (371)
T PRK13520 223 LA-PIPAGGILFRDE 236 (371)
T ss_pred Cc-cCCceEEEEcCH
Confidence 76 788999988664
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=198.37 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
.+.++++|+.+++++|+++++..|+||+|+|+|+.+++.++. .+++++++..+..+... +...++..|++++.++++
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~ 106 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFS 106 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecC
Confidence 478899999999999998754468899999999999999975 34666554333222221 345567789999999987
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
+ +..++.+++++.+..+ ++++++++++.+|.||+++|++ ++..|+++|+.+++|++++.|. .++++..++
T Consensus 107 ~-~~~~d~~~l~~~l~~~------~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~--~~~~~~~~~ 177 (355)
T TIGR03301 107 E-YEPPDLNRIEEALAAD------PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA--IPIDIEELD 177 (355)
T ss_pred C-CCCCCHHHHHHHHHhC------CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCC--cccchhhcC
Confidence 5 3578999999988642 3578999999999999999997 4567899999999999998886 588998899
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+|++++|+|||+++ |.|+|+++++++.++.+.
T Consensus 178 ~d~~~~s~~K~l~~-~~G~g~~~~~~~~~~~~~ 209 (355)
T TIGR03301 178 VDALIASANKCLEG-VPGFGFVIARRDLLEASA 209 (355)
T ss_pred ccEEEecCCccccc-CCceeEEEECHHHHHHhh
Confidence 99999999999866 789999999998776543
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=215.59 Aligned_cols=211 Identities=16% Similarity=0.063 Sum_probs=158.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
..|+-|-....++...+..+.. .... .+|||.+ .+.++++|+.+|+++|+++++...+|
T Consensus 23 ~~~~g~p~~~~~~~~~~~~~~~-------~~~~------n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~ 89 (380)
T PRK02769 23 YFNVGYPEAADFDYSALKRFFS-------FSIN------NCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYI 89 (380)
T ss_pred hcccCCCchhhcCHHHHHHHHH-------hhhc------cCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 4566666666565555554321 1111 2455542 36788999999999999876534589
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|||+++.... ..+.++++|+++ +.+|.|+.. .++..|+++..|+++. +++++.++|+++|.+. +.
T Consensus 90 TsGgTean~~a~~~ar~~~~~~~ii~s-~~~H~Sv~k---a~~~lg~~~~~V~~~~-~g~id~~~L~~~i~~~-----~~ 159 (380)
T PRK02769 90 TNGGTEGNLYGCYLARELFPDGTLYYS-KDTHYSVSK---IARLLRIKSRVITSLP-NGEIDYDDLISKIKEN-----KN 159 (380)
T ss_pred ecChHHHHHHHHHHHHHhCCCcEEEeC-CCceehHHH---HHHHcCCCCceeccCC-CCcCcHHHHHHHHHhC-----CC
Confidence 99999996554332 235567777766 457888763 3445577778888864 7899999999999752 33
Q ss_pred CceEEEEeCccCcccchhcHHH-HHHHHHCC---cEEEeeccccCCCCCcc-------CCCCCCCCcEEEEcccccCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQW-MALAQQNH---WHVLLDAGSLGPKDMDS-------LGLSLFRPDFIITSFYRVFGFD 369 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G---~~VLVDAAQ~aG~~mip-------LDLs~l~~DFlv~S~HK~fG~~ 369 (872)
+|.+|++++.+|+||++.|++. .+.|+++| +++||||||.+++ +| +|+.. ++|++++|+|||+|.
T Consensus 160 ~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~--~p~~~~~~~~d~~~-~vDsis~s~HK~~~~- 235 (380)
T PRK02769 160 QPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMI--LPFVNNPPPFSFAD-GIDSIAISGHKFIGS- 235 (380)
T ss_pred CcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEeccccee--ecccCccccCCccC-CCCEEEECCcccCCC-
Confidence 6899999999999999999985 56779998 6999999999986 54 88877 999999999999998
Q ss_pred CCceEEEEEeCCCccccc
Q 002866 370 PTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 370 PtGvG~LyVRk~~i~~L~ 387 (872)
|.|+|+||+|++.+..+.
T Consensus 236 P~g~G~l~~r~~~~~~~~ 253 (380)
T PRK02769 236 PMPCGIVLAKKKYVERIS 253 (380)
T ss_pred CCCcEEEEEehhhhhhcc
Confidence 999999999998665443
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-23 Score=234.34 Aligned_cols=220 Identities=23% Similarity=0.283 Sum_probs=152.7
Q ss_pred HhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcC
Q 002866 140 RANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLN 211 (872)
Q Consensus 140 R~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLg 211 (872)
|+++|..+. ||||++.+++++.+.+.+. |. .+ .....|||+ .+.++++|-+|..+++
T Consensus 14 r~~e~s~~~---yldhag~tl~sesq~~g~~----~~----sq----~~e~~nphs~~~ts~~l~~~v~Q~r~ril~~f~ 78 (728)
T KOG2142|consen 14 RDREFSRLA---YLDHAGRTLFSESQLEGVA----FQ----SQ----SSENANPHSHLGTSRSLARLVAQVRLRILALFN 78 (728)
T ss_pred hhHHHHHHH---HHHhhhhhhhhhcccchhh----hh----hh----ccccCCCcccccchHHHHHHHHHHHHHHHHHhc
Confidence 666788776 9999999999999887632 21 11 123456664 2688999999999999
Q ss_pred CCCCCCcEEEeCCHHHHHHHHHhhCCCCC-CCeE---EEecccCchhHH--HHHHHHHHcCcEEEEE-ecc--CCCCccC
Q 002866 212 IPENEYGLVFTVSRGSAFKLLAESYPFHT-NKKL---LTMFDYESQSVN--WMAQSAKEKGAKVYSA-WFK--WPTLKLC 282 (872)
Q Consensus 212 A~~dEY~VVFTsnATeALnLVaeslpf~~-Gd~I---LT~~DhEHnSVl--~~~~~AkrkGaeV~~V-pvd--~p~g~Id 282 (872)
....+|.++||. .|+||++|++.|||-. +.++ =.+ .|.|.++. .++. ...|+-+..+ ... |+. +
T Consensus 79 tta~dy~v~lp~-~t~al~~vae~fp~~s~tekid~lrs~-~y~hls~s~~~~~~--~~~~~gl~sy~q~~~i~~~---~ 151 (728)
T KOG2142|consen 79 TTAFDYEVSLPA-LTEALKLVAEAFPFYSQTEKIDNLRSD-EYGHLSSSGHLMRL--DYSGIGLFSYSQTNEISDS---E 151 (728)
T ss_pred cccccccchhHH-HHHHHHHHHHhCccccccccccchhhh-hhcccccccceeee--eeeccceEEeeeeeecccc---c
Confidence 999999999999 9999999999999843 3333 122 23333333 2332 1123333322 111 110 1
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHH-HCCcEEEeeccccCCCCCccCCCCCCCCcEEEEc
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQ-QNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITS 361 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Ar-e~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S 361 (872)
...+-+... .-....|++++.++|+.|.++-..+|...+ ..+|+++||+|..+.. .+||++.+++||...
T Consensus 152 ~~sls~~~~------~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSa--f~Ldaesy~f~~~~~- 222 (728)
T KOG2142|consen 152 EFSLSESEA------NLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSA--FPLDAESYPFDFNPK- 222 (728)
T ss_pred ccccccccc------CcccchhcccchhcccccceeeeeeecccccCCceEEEEEeeccccc--ccchHhhCCCcccch-
Confidence 111111111 123468999999999999985555666554 7899999999999987 799999999999999
Q ss_pred ccccCCCCCCceEEEEEeCCCcccccCCCCCCCCCeEEE
Q 002866 362 FYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVKI 400 (872)
Q Consensus 362 ~HK~fG~~PtGvG~LyVRk~~i~~L~P~~~~~GgGtV~~ 400 (872)
+||+||+ |+ |+|.+.++..+. .|||+++.
T Consensus 223 lltiFgy-et--gAvlv~~r~A~~-------~Ggkt~sa 251 (728)
T KOG2142|consen 223 LLTIFGY-ET--GAVLVMNRSAEL-------KGGKTASA 251 (728)
T ss_pred heeecCC-Cc--hhhHHHhhhhHh-------hcCcccee
Confidence 9999999 87 888877766543 27887755
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=194.81 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=148.4
Q ss_pred hhHHHHH---hhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc
Q 002866 134 DKIDQLR---ANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL 210 (872)
Q Consensus 134 ~~ID~lR---~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL 210 (872)
+-++.++ ++.-|.-. -.+|++.++.|.|. +++++.+ +...++.+... .|......+++|+.||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~a~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~ 72 (373)
T TIGR03812 4 EVLEELKEYRSEDLKYSD-GRILGSMCTNPHPI-AVKAYDM-------FIETNLGDPGL--FPGTKKIEEEVVGSLGNLL 72 (373)
T ss_pred HHHHHHHHHHhcCCCCCC-CcEEEEEeCCchHH-HHHHHHH-------HhhcCCCCccc--CccHHHHHHHHHHHHHHHh
Confidence 3445554 33333322 34788888877665 3444321 11111111001 1333467789999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHhhCC---C--CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHH
Q 002866 211 NIPENEYGLVFTVSRGSAFKLLAESYP---F--HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 211 gA~~dEY~VVFTsnATeALnLVaeslp---f--~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~ed 285 (872)
|+++. .+++|.|+|+++.+++..+. + .+|++|++. +.+|.+ |...++..|++++.+++++ ++.++.++
T Consensus 73 g~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~-~~~h~~---~~~~~~~~G~~~~~v~~~~-~~~~d~~~ 145 (373)
T TIGR03812 73 HLPDA--YGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVP-ESAHFS---FEKAAEMLGLELRYAPLDE-DYTVDVKD 145 (373)
T ss_pred CCCCC--CeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEEC-CcchHH---HHHHHHHcCCeEEEEeeCC-CCCcCHHH
Confidence 99765 38889999999877655432 1 356788876 345654 4456777899999999875 57789999
Q ss_pred HHHHHhhhhccCCCCCc-eEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC--------CCccCCCCCCCC
Q 002866 286 LRKQISSKKRRKKDSAA-GLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK--------DMDSLGLSLFRP 355 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T-~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~--------~mipLDLs~l~~ 355 (872)
|++++.. ++ .++++. .+|.||++.|++. +..|+++|++++||+||..+. ....+|+...++
T Consensus 146 l~~~l~~--------~~~~vv~~~-~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~ 216 (373)
T TIGR03812 146 VEDLIDD--------NTIGIVGIA-GTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV 216 (373)
T ss_pred HHHHHhh--------CcEEEEEEC-CCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCC
Confidence 9998864 24 345444 6899999999974 567899999999999986431 002467766789
Q ss_pred cEEEEcccccCCCCCCceEEEEEeC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
|++++|+|||+++ |.|+|++++++
T Consensus 217 d~~~~s~~K~~~~-~~~~G~~~~~~ 240 (373)
T TIGR03812 217 QSITIDPHKMGLS-PIPAGGILFRS 240 (373)
T ss_pred CEEEECccccCCC-cCCceEEEEeC
Confidence 9999999998665 78888777644
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=207.20 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=144.5
Q ss_pred CcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHH
Q 002866 189 LYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMA 259 (872)
Q Consensus 189 ~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~ 259 (872)
.+|||.+ .++++++|+.+|+++|++++++.-+||+|+|||+++...+.. ..++..|+++ +.+|.|+.
T Consensus 50 ~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s-~~~H~Sv~--- 125 (374)
T PLN03032 50 NLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYAS-RESHYSVF--- 125 (374)
T ss_pred CCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeC-CCceeHHH---
Confidence 4677753 478899999999999999876445999999999987655422 1233455555 55788886
Q ss_pred HHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCC-----cEE
Q 002866 260 QSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNH-----WHV 333 (872)
Q Consensus 260 ~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G-----~~V 333 (872)
+.++..|++++.||++. +++++.++|+++|... ..++.+|++++.+++||++.|++.| ..|+++| +++
T Consensus 126 kaa~~lg~~~~~V~~d~-~g~id~~~L~~~i~~~-----~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~l 199 (374)
T PLN03032 126 KAARMYRMEAVKVPTLP-SGEIDYDDLERALAKN-----RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYI 199 (374)
T ss_pred HHHHHcCCCCeEeeeCC-CCcCcHHHHHHHHHHc-----CCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeE
Confidence 34555678888999975 6899999999999752 1257899999999999999999855 5678886 589
Q ss_pred EeeccccCCCCCccC-------CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccc
Q 002866 334 LLDAGSLGPKDMDSL-------GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGS 385 (872)
Q Consensus 334 LVDAAQ~aG~~mipL-------DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~ 385 (872)
||||||.+++ +|+ |+. .++|.+++|+|||+|. |.|+|+||+|+..+..
T Consensus 200 HvDaA~gg~~--~p~~~~~~~~~~~-~~vDSis~s~HK~~g~-P~g~G~ll~r~~~~~~ 254 (374)
T PLN03032 200 HCDGALFGLM--MPFVSRAPEVTFR-KPIGSVSVSGHKFLGC-PMPCGVALTRKKHVKA 254 (374)
T ss_pred EEEccchhhh--hhccCCCcccCCC-cCCcEEEECcccccCC-CcCeEEEEEEchhhHh
Confidence 9999998886 564 554 3799999999999998 9999999999876543
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=189.64 Aligned_cols=177 Identities=17% Similarity=0.079 Sum_probs=132.9
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC--CC---------CCC--eEEEecccCchhHHHHH
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP--FH---------TNK--KLLTMFDYESQSVNWMA 259 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp--f~---------~Gd--~ILT~~DhEHnSVl~~~ 259 (872)
+...++.+++++.+++++|++..+..++||+|+|+|+.+++.++. +. +++ .|++. +..|.++..
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~h~~~~~-- 110 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCS-DQAHVSVEK-- 110 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEc-CcchhHHHH--
Confidence 344577888999999999996223369999999999998887652 11 222 34444 445666543
Q ss_pred HHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeecc
Q 002866 260 QSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAG 338 (872)
Q Consensus 260 ~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAA 338 (872)
.++..|++++.+|++. ++.++.++|+++|.+... ...+++++++++.+|.||.+.|++. ++.|+++|+++++|++
T Consensus 111 -~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~--~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a 186 (345)
T cd06450 111 -AAAYLDVKVRLVPVDE-DGRMDPEALEAAIDEDKA--EGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAA 186 (345)
T ss_pred -HHHHHhcCeEEeeeCC-CCCcCHHHHHHHHHHHHH--CCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEech
Confidence 3344589999999876 468999999999865211 2235789999999999999999974 5678999999999999
Q ss_pred ccCCCCCccCCCCC------CCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 339 SLGPKDMDSLGLSL------FRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 339 Q~aG~~mipLDLs~------l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
+..+. .+++... .++|++++|+|||+++ |.|+|+++++
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-p~g~g~~~~~ 230 (345)
T cd06450 187 YGGFL--LPFPEPRHLDFGIERVDSISVDPHKYGLV-PLGCSAVLVR 230 (345)
T ss_pred hhHHH--hhChhhHHHhcCccccCEEEEchhHhhCC-CcchHHHHHH
Confidence 98875 3443222 3799999999999887 8899988876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=197.68 Aligned_cols=210 Identities=12% Similarity=0.042 Sum_probs=166.2
Q ss_pred ceecccC-CCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 150 KVCLDYC-GFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 150 ~IYLDyA-Atgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~V 219 (872)
+|.||-- -.+|+++.+++++.+ +.. .++||++ ...++++|+.+|+++|++ .+
T Consensus 20 ~~~~~~~~~~~p~~~~~~~a~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~----~~ 81 (387)
T PRK09331 20 FINLDPIQRGGILTPEARKALIE--------YGD------GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD----EA 81 (387)
T ss_pred ccccChhhcCCCCCHHHHHHHHH--------HHh------ccCCCcccccccccccChHHHHHHHHHHHHhCCC----cE
Confidence 5666643 567999999988643 111 2344321 246899999999999994 27
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec--cCCCCccCHHHHHHHHhhhhccC
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF--KWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv--d~p~g~Id~edLe~~I~~~~rr~ 297 (872)
+||+|+|+|+.+++.++ +++|++|++. ..+|.++.. .++..|++++.++. ++ ++.++.+++++.|....+ .
T Consensus 82 ~~~~g~t~a~~~al~~l-~~~gd~Vlv~-~~~h~s~~~---~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~-~ 154 (387)
T PRK09331 82 RVTHGAREGKFAVMHSL-CKKGDYVVLD-GLAHYTSYV---AAERAGLNVREVPKTGYP-EYKITPEAYAEKIEEVKE-E 154 (387)
T ss_pred EEeCCHHHHHHHHHHHh-cCCCCEEEEC-CCchHHHHH---HHHHcCCEEEEEeCccCc-CCCcCHHHHHHHHHHhhh-c
Confidence 89999999999999888 5889998876 456666643 35668999999998 44 567899999998864210 1
Q ss_pred CCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
..+++++|++++.+|.||.+.|++. ++.||++|+.+++|++|++|. ++++...+++|++++|+||++++ |.|+|+|
T Consensus 155 ~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~--~~~~~~~~g~D~~~~s~~K~l~~-~~~~G~l 231 (387)
T PRK09331 155 TGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR--MPVDGKKLGADFIVGSGHKSMAA-SAPSGVL 231 (387)
T ss_pred cCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCC--cCCCHHHcCCCEEEeeCcccccC-CCCEEEE
Confidence 1246899999999999999999974 567899999999999999997 68999889999999999999987 8899999
Q ss_pred EEeCCCccccc
Q 002866 377 LIKKSVMGSLQ 387 (872)
Q Consensus 377 yVRk~~i~~L~ 387 (872)
+++++.++.+.
T Consensus 232 ~~~~~~i~~~~ 242 (387)
T PRK09331 232 ATTEEYADKVF 242 (387)
T ss_pred EECHHHHhhcc
Confidence 99988776554
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-18 Score=207.05 Aligned_cols=204 Identities=19% Similarity=0.114 Sum_probs=150.0
Q ss_pred CCceecccCCCCC----CcHHHHHHhhhcccccHHHHHHhhccCcCcCCC---chHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGFGL----FSYIQTLHYWESSTFSLSEITANLSNHALYGGA---EKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAtgp----~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNp---sS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
.+.+|++|.|.++ +|..+++++.+.+.| ++. ...|-.. ...+.+.+.|..|++|+|+++++ +.
T Consensus 100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~----~Ta----ytPYqaEisQG~lqal~~~Qt~ia~LtG~~~an--aS 169 (993)
T PLN02414 100 KNKVFKSYIGMGYYNTHVPPVILRNILENPGW----YTQ----YTPYQAEIAQGRLESLLNYQTMITDLTGLPMSN--AS 169 (993)
T ss_pred cCCccccccCCCCCCccCCHHHHHHHHhChHH----Hhh----cCCCchHHHHHHHHHHHHHHHHHHHHhCCChhh--Ee
Confidence 4578999999999 777777876553332 121 1223211 12368899999999999999874 99
Q ss_pred EeCCHHHHHHHHHhhCCCCCC--CeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 221 FTVSRGSAFKLLAESYPFHTN--KKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~G--d~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
|+.|+|++.+.++.+++|++| ++|+++ +++|++. ..|+.++++.|++|+.++++.. + ...
T Consensus 170 L~d~aTAaaea~~~a~~~~~g~~~~VlVs-~~~hP~~~~v~~t~a~~~GieV~~v~~~~~----~------~~~------ 232 (993)
T PLN02414 170 LLDEGTAAAEAMAMCNNILKGKKKKFLIA-SNCHPQTIDVCQTRADGLGLEVVVADEKDF----D------YSS------ 232 (993)
T ss_pred ecCChHHHHHHHHHHHhcccCCCCEEEEc-CccCHhHHHHHHHhhhhcCCEEEEecchhh----c------ccc------
Confidence 999999999999888888765 567765 4456654 4567788899999999876421 0 000
Q ss_pred CCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC-CCCCCCCcEEEEcccccCCCCCCc---
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL-GLSLFRPDFIITSFYRVFGFDPTG--- 372 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL-DLs~l~~DFlv~S~HK~fG~~PtG--- 372 (872)
..-..++.+..|.+|.+.|++ +++.||++|++++| |++.++. ..+ ++.++++||+++++|||.+ |.|
T Consensus 233 ---~~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal--~~l~~pge~GADi~vgsgqKwg~--P~G~GG 304 (993)
T PLN02414 233 ---GDVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLAL--TMLKPPGEWGADIVVGSAQRFGV--PMGYGG 304 (993)
T ss_pred ---CceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHh--cCCCCHhhccCcEEEECCCcccc--CCCCCC
Confidence 111233467778999999997 55788999999999 8877775 455 5889999999999999962 444
Q ss_pred --eEEEEEeCCCcccc
Q 002866 373 --FGCLLIKKSVMGSL 386 (872)
Q Consensus 373 --vG~LyVRk~~i~~L 386 (872)
+|+||+|++....+
T Consensus 305 P~aGflavr~~~~r~~ 320 (993)
T PLN02414 305 PHAAFLATSQEYKRLM 320 (993)
T ss_pred CCeeEEEECHHHHhhC
Confidence 89999999875533
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=208.45 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHH----HHHHHHHhhCCCCC-CC----eEEEecccCchhHHHHHHHHHHcCc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRG----SAFKLLAESYPFHT-NK----KLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnAT----eALnLVaeslpf~~-Gd----~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
++++++|+.+++++|+ + .|+||+|+| +|+++++.+| +++ |+ +||++ +.+|+++.... ...|+
T Consensus 568 ~~~~~~r~~la~i~g~--~--~v~f~pnaga~ge~a~~~vi~~~-~~~~Gd~~r~~vli~-~~aH~sn~a~a---~~~G~ 638 (993)
T PLN02414 568 EMFEDLGDLLCEITGF--D--SFSLQPNAGAAGEYAGLMVIRAY-HLSRGDHHRNVCIIP-VSAHGTNPASA---AMCGM 638 (993)
T ss_pred HHHHHHHHHHHHHhCC--C--eEEEcCCCcHHHHHHHHHHHHHH-HhccCCCCCCEEEeC-CCcCccCHHHH---HHCCC
Confidence 6899999999999999 3 499999999 9999999999 444 77 55554 23455554322 23799
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
+|+++|++. +|.+|.++|+++|..+ +.+|++|++++.||++|...||+ ++++||++|+.|+|||||.+++ +.
T Consensus 639 ~vv~v~~d~-~G~vDle~L~~~i~~~-----~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~-~~ 711 (993)
T PLN02414 639 KIVVVGTDA-KGNINIEELRKAAEAH-----KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ-VG 711 (993)
T ss_pred EEEEeccCC-CCCcCHHHHHHHHhcc-----CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc-cC
Confidence 999999975 6899999999999742 23689999999999999999997 5578899999999999998886 24
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc-----eEEEEEeCCCcccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG-----FGCLLIKKSVMGSL 386 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG-----vG~LyVRk~~i~~L 386 (872)
..+..++++||+++|.||+|++ |.| +|+|++++.+...|
T Consensus 712 l~~p~~~GaD~~~~s~HK~f~~-P~G~GGPg~G~l~~~~~L~p~l 755 (993)
T PLN02414 712 LTSPGFIGADVCHLNLHKTFCI-PHGGGGPGMGPIGVKKHLAPFL 755 (993)
T ss_pred cCCccccCCCEEEecCCccCCc-CcccCCCCeeeEEEchhhcccC
Confidence 5666789999999999998776 665 99999999766555
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=193.93 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=149.3
Q ss_pred eecccCCCCCCcHHHH-HHhhhcccccHHHHHHhhccCcCcCCCc----hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 151 VCLDYCGFGLFSYIQT-LHYWESSTFSLSEITANLSNHALYGGAE----KGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 151 IYLDyAAtgp~p~~Vi-eA~~e~~~F~ls~i~~nL~~~~~ygNps----S~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
.|++-+....+-+.|+ +.+.+.|.| ++.. ..|- |+ ..+.+.+.+..|++++|++..+ +.|+.++
T Consensus 79 ~~ig~G~y~~~~P~vi~~~i~~~~~~----~t~y----tPyQ-~EisQG~Leal~~~Qt~la~LtG~~~an--aSl~d~a 147 (954)
T PRK05367 79 SYIGQGYYGTHTPPVILRNILENPAW----YTAY----TPYQ-PEISQGRLEALLNFQTMVADLTGLEIAN--ASLLDEA 147 (954)
T ss_pred cccCCCCCCCcCcHHHHHHHHhCcch----hhcc----CCCC-hHHHHHHHHHHHHHHHHHHHHHCCChhh--ccccccH
Confidence 4566666655444544 555554444 1211 1222 22 2378889999999999998874 9999999
Q ss_pred HHHHHHHHhhCCCCCC--CeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 226 GSAFKLLAESYPFHTN--KKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 226 TeALnLVaeslpf~~G--d~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
|++.+.++.+++++++ ++|+++ +++|++. ..|+.+++..|++|+.++.+. + ++ . .++
T Consensus 148 TAa~ea~~~a~~~~~~~~~~vlv~-~~~hP~~~~v~~t~a~~~G~ev~~~~~~~-d--~~---------~-------~~~ 207 (954)
T PRK05367 148 TAAAEAMALAKRVSKSKSNRFFVD-DDVHPQTLDVLRTRAEPLGIEVVVGDAAK-A--LD---------H-------DDV 207 (954)
T ss_pred HHHHHHHHHhhhhccCCCCEEEEc-CccCHHHHHHHHHHHHhCCCEEEEecCcc-C--CC---------c-------ccE
Confidence 9999999999988875 787765 4456665 456777889999999998643 1 11 1 123
Q ss_pred eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEccccc-----CCCCCCceEEE
Q 002866 303 GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRV-----FGFDPTGFGCL 376 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~-----fG~~PtGvG~L 376 (872)
..++.+..|.+|.+.|++ +++.||++|++++|||.+.+.. +..+..++++||+++++||| ||+ | |+|+|
T Consensus 208 -~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~--~l~~pge~GaDi~vgs~qkfg~P~g~GG-P-~aGfl 282 (954)
T PRK05367 208 -FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALT--LLTPPGEMGADIAVGSAQRFGVPMGFGG-P-HAAYF 282 (954)
T ss_pred -EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhcc--CCCChhhcCCCEEEeeCcccCCCCCCCC-C-CEEEE
Confidence 445667789999999997 5678899999999999775443 34478999999999999999 787 6 79999
Q ss_pred EEeCCCcccccCC
Q 002866 377 LIKKSVMGSLQNQ 389 (872)
Q Consensus 377 yVRk~~i~~L~P~ 389 (872)
|+|++....|.+.
T Consensus 283 avr~~~~r~lpgr 295 (954)
T PRK05367 283 AVRDAYKRSMPGR 295 (954)
T ss_pred EECHHHHhhCCCC
Confidence 9999987777654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=174.16 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=133.9
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccC-cCcCCCc----hHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNH-ALYGGAE----KGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~-~~ygNps----S~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
.=|||+++++++.+.+++++.+ +.....+. ...+... ....++++|++||+++|++. .++||+|
T Consensus 12 ~~YL~~~~~~~~~~~~~~~~~~--------~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~---~l~~~sG 80 (370)
T PRK05937 12 NDFLGFSRSDTLVHEVEKRYRL--------YCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE---AFIVPSG 80 (370)
T ss_pred CCccCCCCCHHHHHHHHHHHHH--------hccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe---EEEECCh
Confidence 4599999999988888876432 11110000 0011111 23689999999999999953 4888888
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
.+..+ .++..+ .++|+.|++. ..+|.++....... .|..+.+ . .++.++|+++|....+ ..+.+.+
T Consensus 81 ~~a~~-~~~~~~-~~~~d~ii~d-~~~H~sv~~~~~~~--~~~~~~~---~----~~d~~~l~~~l~~~~~--~~~~~~~ 146 (370)
T PRK05937 81 YMANL-GLCAHL-SSVTDYVLWD-EQVHISVVYSLSVI--SGWHQSF---R----HNDLDHLESLLESCRQ--RSFGRIF 146 (370)
T ss_pred HHHHH-HHHHHh-CCCCCEEEEE-hhhhHHHHHHHHHc--CCceEEe---c----CCCHHHHHHHHHhhhc--cCCCcEE
Confidence 75443 333333 2456666654 45678886543332 2444332 1 3578999998874311 1235778
Q ss_pred EEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCC----CCC---CcEEEEcccccCCCCCCceEEE
Q 002866 305 FVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLS----LFR---PDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs----~l~---~DFlv~S~HK~fG~~PtGvG~L 376 (872)
|++++++|++|.++|++. .+.|+++|++++||++|++|+ ++.+.. .++ .|.+.+|++|+|| |.|.|+|
T Consensus 147 v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~--~g~~g~g~~~~~~~~~~~~~~~tlsK~~g--~~G~~vl 222 (370)
T PRK05937 147 IFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGI--FGDDGKGFCHSLGYENFYAVLVTYSKALG--SMGAALL 222 (370)
T ss_pred EEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHHhhCCCCCcEEEEechhhhh--cCceEEE
Confidence 899999999999999975 567899999999999999886 566653 222 2356688889998 7899988
Q ss_pred EEeC
Q 002866 377 LIKK 380 (872)
Q Consensus 377 yVRk 380 (872)
+.++
T Consensus 223 ~~~~ 226 (370)
T PRK05937 223 SSSE 226 (370)
T ss_pred cCHH
Confidence 7643
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=175.89 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++|+++|+++|+ + .|+||+|+|+|+.+++.++ .++|++|++.. ..|.++. ..++..|++++.+++++
T Consensus 44 ~~~~~l~~~la~~~g~--~--~i~~~~g~t~al~~~l~~~-~~~gd~Vl~~~-~~~~~~~---~~~~~~g~~~~~v~~~~ 114 (361)
T cd06452 44 PPIKDFHHDLAEFLGM--D--EARVTPGAREGKFAVMHSL-CEKGDWVVVDG-LAHYTSY---VAAERAGLNVREVPNTG 114 (361)
T ss_pred chHHHHHHHHHHHcCC--c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEEcC-CcchHHH---HHHHhcCCEEEEEecCC
Confidence 3578999999999999 3 4999999999999999887 57899988763 3455443 34677899999999976
Q ss_pred C-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 277 P-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 277 p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
. +..++.+++++++....+ ...+++++|.+++.+|.||.+.|++ +++.|+++|+.+++|+|+..|. .++++.+++
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~-~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~~ 191 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKD-EFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR--MPVSGKELG 191 (361)
T ss_pred CCCcccCHHHHHHHHHHHhh-ccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC--cCCCHHHcC
Confidence 3 237899999988864211 0013589999999999999999997 5567899999999999999886 578888889
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+|++++|+||+|+. |.++|+|+++++.++.+..
T Consensus 192 ~d~~~~s~~K~l~~-~~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 192 ADFIVGSGHKSMAA-SAPIGVLATTEEWADIVFR 224 (361)
T ss_pred CCEEEecCCccccC-CCCeEEEEECHHHHHHHhc
Confidence 99999999999987 7899999999888777654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-16 Score=173.79 Aligned_cols=174 Identities=11% Similarity=0.054 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEec
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpv 274 (872)
.+.+.+.++.+++++|++++ .+++|+|+|+++..+..++.+.+|++|++. +..|.+... +...++..|++++.+|+
T Consensus 111 ~~~~~e~~~~la~l~g~~~~--~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~-~~~~~~~~~~~~~~~~~~G~~~~~v~~ 187 (447)
T PRK00451 111 LQAIFEYQTMICELTGMDVA--NASMYDGATALAEAALMAVRITKRKKVLVS-GAVHPEYREVLKTYLKGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcc--eEEecCcHHHHHHHHHHHHHhcCCCEEEEe-CccCHHHHHHHHHHHHhCCcEEEEecC
Confidence 35667777899999999876 499999999999988888766788998775 345666543 44456678999999999
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEe--eccccCCCCCccCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLL--DAGSLGPKDMDSLGLS 351 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLV--DAAQ~aG~~mipLDLs 351 (872)
++ + .++.++|+++|.. +|++|++++. |.||.+.|++. .+.||++|+++++ |+.. +|. +. ...
T Consensus 188 ~~-~-~~d~~~l~~~i~~--------~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g~--~~-~~~ 252 (447)
T PRK00451 188 ED-G-VTDLEALEAAVDD--------DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVS-LGL--LK-PPG 252 (447)
T ss_pred CC-C-CCCHHHHHHhcCC--------CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHH-hcc--CC-Ccc
Confidence 86 4 7899999888853 5899999987 88999999984 5678999999988 7654 343 22 235
Q ss_pred CCCCcEEEEccccc-----CCCCCCceEEEEEeCCCcccccCC
Q 002866 352 LFRPDFIITSFYRV-----FGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 352 ~l~~DFlv~S~HK~-----fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++++|++++|+||| +|+ | |+|+++++++.++.+.+.
T Consensus 253 ~~~~D~~~~s~~k~~~~~~~~G-p-g~G~l~~~~~~~~~~~~~ 293 (447)
T PRK00451 253 EYGADIVVGEGQPLGIPLSFGG-P-YLGFFATRKKLVRQMPGR 293 (447)
T ss_pred cCCCCEEEECCCcCCCCCCCCC-C-CchHHHhhHHHHhhCCCC
Confidence 68999999999997 666 6 899999999988877654
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=182.43 Aligned_cols=162 Identities=12% Similarity=0.051 Sum_probs=130.0
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGae 268 (872)
++||. +++.++++|++.|+.. .+||+|+|+|+++++.++ +++||+||++. .+|.+.. .+...+++.|++
T Consensus 61 ~~~p~----~~~le~~lA~l~g~~~----av~~sSGt~Al~~al~~l-l~~Gd~Vi~~~-~~y~~t~~~~~~~l~~~Gi~ 130 (433)
T PRK08134 61 ISNPT----VAVLEERVAALEGGVG----AIATASGQAALHLAIATL-MGAGSHIVASS-ALYGGSHNLLHYTLRRFGIE 130 (433)
T ss_pred CcChH----HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHH-hCCCCEEEEeC-CccHHHHHHHHHHHhhCCeE
Confidence 45554 6789999999999852 699999999999999988 88999988763 2343333 333345678999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+++++++ +.++++++|.. +|+||.+.+.+|.+|.++|++ +.+.||++|+.+++|++|+.|. ..
T Consensus 131 v~~vd~~------d~~~l~~~i~~--------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~--~~ 194 (433)
T PRK08134 131 TTFVKPG------DIDGWRAAIRP--------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPY--LL 194 (433)
T ss_pred EEEECCC------CHHHHHHhcCC--------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccc--cC
Confidence 9998763 57888887753 699999999999999999998 5567899999999999999997 34
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKK 380 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk 380 (872)
..+ .+++|++++|+|||+|+ .| +|.+++..
T Consensus 195 ~pl-~~GaD~vv~S~tK~l~g--~g~~~gG~v~~~ 226 (433)
T PRK08134 195 RPF-EHGADLVYHSATKFLGG--HGTAIGGVLVDG 226 (433)
T ss_pred Cch-hcCCCEEEeccccccCC--CCCceEEEEEec
Confidence 444 68999999999999994 46 78887754
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=171.54 Aligned_cols=174 Identities=10% Similarity=0.044 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH--HHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL--LAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL--Vaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
.+.+.+.++.+++++|++.. .+.-++++++.+.. ++..+...+|+ +||+. +..|++.... ++..|+++
T Consensus 112 lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~-~~~hp~~~~~---~~~~G~~v 185 (481)
T PRK04366 112 LELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVP-DSAHGTNPAS---AAMAGFKV 185 (481)
T ss_pred HHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEc-CCccHhHHHH---HHHcCCEE
Confidence 37889999999999999632 23333444444442 23333344554 77665 3356665533 46689999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch-hcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK-YSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i-~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.+|++. ++.++.++|+++|.. +|++|++++ .|.||.+ .|++ +++.||++|++++||+||+++.- ..
T Consensus 186 v~v~~~~-~~~~D~e~L~~~i~~--------~t~~V~v~~-Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~-g~ 254 (481)
T PRK04366 186 VEIPSNE-DGLVDLEALKAAVGE--------DTAALMLTN-PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL-GK 254 (481)
T ss_pred EEeecCC-CCCcCHHHHHhhccc--------CCeEEEEeC-CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhc-cc
Confidence 9999974 578999999888853 588888887 4589987 5887 45778999999999999986631 23
Q ss_pred CCCCCCCCcEEEEcccccCCCCCC-----ceEEEEEeCCCccccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPT-----GFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~Pt-----GvG~LyVRk~~i~~L~ 387 (872)
++..++++|++++++|||||. |. |+|+|+++++....|.
T Consensus 255 ~~~~~~GaD~~~~~~hK~l~~-P~g~Ggp~~G~l~~~~~~~~~lp 298 (481)
T PRK04366 255 ARPGDMGFDVVHLNLHKTFST-PHGGGGPGSGPVGVKEELAPFLP 298 (481)
T ss_pred CCccccCCCEEEEechhhcCC-CCCCCCCCeeeeeehhhhHhhCC
Confidence 577889999999999999886 54 5679999988766554
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=176.59 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCch-hHHHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQ-SVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHn-SVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.++++|++.|+.. .|+| ++++.|+.++.. -+++||+||+.. ..|. ....+.+.+++.|++++.++..
T Consensus 55 ~~~~le~~lA~l~g~~~---~v~~-~sG~~ai~~~l~--~l~~Gd~Vlv~~-~~y~~~~~~~~~~~~~~G~~v~~v~~~- 126 (390)
T PRK08064 55 TREALEDIIAELEGGTK---GFAF-ASGMAAISTAFL--LLSKGDHVLISE-DVYGGTYRMITEVLSRFGIEHTFVDMT- 126 (390)
T ss_pred hHHHHHHHHHHHhCCCC---eEEE-CCHHHHHHHHHH--HhCCCCEEEEcc-CccchHHHHHHHHHHHcCCEEEEECCC-
Confidence 35689999999999863 3665 555778877765 357899987663 2344 3445556678889999998753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.+++++++. ++|++|.+.+.+|.||.+.|++ +.+.||++|+.+++|+++..+....++ ++++
T Consensus 127 -----d~~~l~~~l~--------~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~---~~g~ 190 (390)
T PRK08064 127 -----NLEEVAQNIK--------PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL---DLGA 190 (390)
T ss_pred -----CHHHHHHhcC--------CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch---hhCC
Confidence 4677776664 3589999999999999999998 456789999999999998877521233 4689
Q ss_pred cEEEEcccccCCCCCCc--eEEEEEeC
Q 002866 356 DFIITSFYRVFGFDPTG--FGCLLIKK 380 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG--vG~LyVRk 380 (872)
|+++.|+||||++ |.| .|+++++.
T Consensus 191 Divv~S~tK~~~G-~~~~laG~~v~~~ 216 (390)
T PRK08064 191 DVVLHSATKFLAG-HSDVLAGLAVVKD 216 (390)
T ss_pred cEEEeecceeccC-CccceeEEEEeCC
Confidence 9999999999988 777 47777654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=163.85 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.++.|++++|++ .++||+|+|+|+.+++..+.+++|++|++.. ..|.++.. .+...|++++.++++.
T Consensus 18 ~~~~~~~~~la~~~~~~----~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~-~~~~~~~~---~~~~~g~~~~~~~~~~ 89 (352)
T cd00616 18 PKVREFEKAFAEYLGVK----YAVAVSSGTAALHLALRALGIGPGDEVIVPS-FTFVATAN---AILLLGATPVFVDIDP 89 (352)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEeCC-cchHHHHH---HHHHcCCeEEEEecCC
Confidence 35678999999999973 3899999999999999998778899988763 34454432 3455799999999976
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC-CCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS-LFR 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs-~l~ 354 (872)
.++.++.+++++++. +++++|.+++ .+|...|++ ++..|+++|+.+++|++|+.|. ...+.. ...
T Consensus 90 ~~~~~d~~~l~~~i~--------~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~--~~~~~~~~~~ 156 (352)
T cd00616 90 DTYNIDPELIEAAIT--------PRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGA--TYKGRKVGTF 156 (352)
T ss_pred CcCCcCHHHHHHhcC--------cCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCC--eECCEEcccC
Confidence 457788999988774 2578888764 699999997 4567899999999999999886 222210 122
Q ss_pred CcEEEEccc--ccCCCCCCceEEEEEeC-CCcccc
Q 002866 355 PDFIITSFY--RVFGFDPTGFGCLLIKK-SVMGSL 386 (872)
Q Consensus 355 ~DFlv~S~H--K~fG~~PtGvG~LyVRk-~~i~~L 386 (872)
+|+.++|+| ||++. |.| |+++.++ +..+.+
T Consensus 157 ~d~~~~S~~~~K~~~~-~~g-g~~~~~~~~~~~~~ 189 (352)
T cd00616 157 GDAGAFSFHPTKNLTT-GEG-GAVVTNDEELAERA 189 (352)
T ss_pred cceeEEcCCCCCCCcc-cCc-eEEEECCHHHHHHH
Confidence 699999977 99865 333 5555553 444434
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=169.93 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=140.5
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHh----hcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe-C
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITAN----LSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT-V 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~n----L~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT-s 223 (872)
.+|+=.+|=+.+|+.|++++.+ .+... +.- ...+-.+...++++++++.+.++++++ ++|.|+|. .
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~-------~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p-~~y~v~~l~G 78 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQA-------ELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIP-DNYEVLFLQG 78 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHH-------HHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEeC
Confidence 3555456666788999987532 11110 000 001123334579999999999999984 56888887 8
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC---ccCHHHHHHHHhhhhccCCCC
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL---KLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g---~Id~edLe~~I~~~~rr~~~~ 300 (872)
++|.++..+..++- .+|++++.... -+= -..|.+.|++.|.....+...+ .. ..+.+++ . .++
T Consensus 79 sgt~~~ea~~~nl~-~~~~~~l~~~~-G~f-g~r~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~----~------~~~ 144 (365)
T PLN02452 79 GASTQFAAIPLNLC-KPGDKADFVVT-GSW-SKKAAKEAKKYCKTNVIASGKD-EKYTKIPSVSEW----E------LTP 144 (365)
T ss_pred ccHHHHHHHHHhcC-CCCCeEEEEEC-CHH-HHHHHHHHHHhCCCcEEEecCC-CCCCCCCChHHc----C------CCC
Confidence 88999999988873 46777543311 111 1256677888887544442222 21 2344432 1 123
Q ss_pred CceEEEEeCccCcccch-hcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 301 AAGLFVFPVQSRVTGAK-YSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i-~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
....|+++|..-.||+. .|++.+. ++.++|||+|++|+ .++|++++++|| +|+||.+| |.|+|++++|
T Consensus 145 ~~~~v~~~hnETstGv~~~~~~~i~-----~~~lvVDa~Ss~g~--~pidv~~~~v~~--~saqK~lG--P~Gl~~v~vr 213 (365)
T PLN02452 145 DAKFVHICANETIHGVEFKDYPDVG-----NVPLVADMSSNFLS--KPVDVSKYGVIY--AGAQKNVG--PSGVTIVIIR 213 (365)
T ss_pred CCcEEEECCCCCCCcEecCcccccC-----CCeEEEECCccccC--cccCHHHcCEEE--EecccccC--CCCeEEEEEc
Confidence 57899999999999995 8886553 38999999999998 699999999988 59999997 8899999999
Q ss_pred CCCccccc
Q 002866 380 KSVMGSLQ 387 (872)
Q Consensus 380 k~~i~~L~ 387 (872)
++.++.++
T Consensus 214 ~~~l~~~~ 221 (365)
T PLN02452 214 KDLIGNAR 221 (365)
T ss_pred HHHHhhcc
Confidence 99876654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=176.98 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=148.4
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
+.+|++|.|.+++|+.+++++.+ + +..+ .++. + .+........++.+++.+++++|+.. .+ +++|++.|
T Consensus 81 g~v~~tNlg~s~l~~~vieAv~~---~-~~~y-~~l~-~-~l~~g~~g~r~~~le~~lA~l~gae~---al-vv~sg~aA 149 (454)
T TIGR00474 81 GVVLHTNLGRAPLAEEAIEAVTD---A-ARGY-SNLE-Y-DLETGKRGSRYSHVEGLLCELTGAED---AL-VVNNNAAA 149 (454)
T ss_pred CcEEeccCCCCCCCHHHHHHHHH---H-Hhcc-cchh-c-cccccccchHHHHHHHHHHHHhCCCc---EE-EECCHHHH
Confidence 37899999999999999998643 1 0000 0110 0 01111123567899999999999953 35 46678889
Q ss_pred HHHHHhhCCCCCCCeEEEec-ccCc-hhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 229 FKLLAESYPFHTNKKLLTMF-DYES-QSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~-DhEH-nSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+++++.. +.+|++||++. +|.| .....+...+++.|++++.++.+ ...+.++++++|. ++|++|.
T Consensus 150 i~l~l~~--l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~---~~~~l~dle~aI~--------~~T~lv~ 216 (454)
T TIGR00474 150 VLLALNT--LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT---NRTHLKDYEDAIT--------ENTALLL 216 (454)
T ss_pred HHHHHHH--hCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC---CCCCHHHHHHhcC--------cCCEEEE
Confidence 9988865 57899988763 2211 11111224456789999888653 2357788888775 3699999
Q ss_pred EeCccCc--cc--chhcHH-HHHHHHHCCcEEEeeccc---------cCCCCCccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 307 FPVQSRV--TG--AKYSYQ-WMALAQQNHWHVLLDAGS---------LGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 307 ~p~vSNv--TG--~i~PLe-~I~~Are~G~~VLVDAAQ---------~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+.|.+|. +| .+.|++ ++..||++|+.+++|+++ .+++.....++.+.++|++++|+|||+|+ |.
T Consensus 217 ~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgG-p~- 294 (454)
T TIGR00474 217 KVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGG-PQ- 294 (454)
T ss_pred EEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCC-Ce-
Confidence 9999997 47 588997 567889999999999872 12221111255568999999999999988 74
Q ss_pred eEEEEEeCCCcccccC
Q 002866 373 FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 373 vG~LyVRk~~i~~L~P 388 (872)
.|+++.+++.++.|+.
T Consensus 295 ~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 295 AGIIVGKKELIERLKK 310 (454)
T ss_pred EEEEEECHHHHHhhhh
Confidence 8999999988876653
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=147.66 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
++++|+.+++++|++.+ .++||+|+|+|+.+++.++. .+++++++... .|.+..+ ..++..|++++.++.+...
T Consensus 2 ~~~~~~~l~~~~~~~~~--~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~-~~~~~~~--~~~~~~g~~~~~v~~~~~~ 75 (170)
T cd01494 2 LEELEEKLARLLQPGND--KAVFVPSGTGANEAALLALL-GPGDEVIVDAN-GHGSRYW--VAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHHcCCCCC--cEEEeCCcHHHHHHHHHHhC-CCCCEEEEeec-ccceehh--hHHHhcCCEEEEeccCCCC
Confidence 46899999999985544 59999999999999999985 45788776532 3444543 4567789999999886532
Q ss_pred CccCHH--HHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC---CCCC
Q 002866 279 LKLCST--DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL---GLSL 352 (872)
Q Consensus 279 g~Id~e--dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL---DLs~ 352 (872)
....+ ++++.. ...+++++.+++.+|.+|..+|++. .+.|+++|+++++|+++..+. ... +...
T Consensus 76 -~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~ 145 (170)
T cd01494 76 -YGGLDVAILEELK-------AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGA--SPAPGVLIPE 145 (170)
T ss_pred -ccchhhhhhhhcc-------ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEeccccccc--cccccccccc
Confidence 22221 332222 2357899999999999999999974 567799999999999998876 343 5777
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
.++|+++.|+||+||+ .|+|+|++|
T Consensus 146 ~~~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 146 GGADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred ccCCEEEEEcccccCC--CceEEEEeC
Confidence 8899999999999995 599999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=168.21 Aligned_cols=195 Identities=14% Similarity=0.069 Sum_probs=141.2
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES 235 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes 235 (872)
=|.+++|+.+++++.+ ... .|.+ ..+.++++++.+++++|++ .++||+|+|+|+++++.+
T Consensus 20 ~g~s~~~~~v~~a~~~--------~~~------~~~~--~~~~~~~~~~~~a~~~g~~----~~~~~~g~t~al~~al~a 79 (363)
T TIGR01437 20 LGVSTVSDEVADAQKR--------GAQ------NYFE--IKELVNKTGEYIANLLGVE----DAVIVSSASAGIAQSVAA 79 (363)
T ss_pred CCCCCCCHHHHHHHHH--------HHh------cCCC--HHHHHHHHHHHHHHhhCCC----eEEEEcCHHHHHHHHHHH
Confidence 3555688889887543 111 1322 2467899999999999984 389999999999999988
Q ss_pred CCCCCCC---------------eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCC
Q 002866 236 YPFHTNK---------------KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 236 lpf~~Gd---------------~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
+ +++|| +|++...|..+-...+...+...|++++++++++ .+++++++++|..
T Consensus 80 l-~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~---~~d~~~le~ai~~-------- 147 (363)
T TIGR01437 80 V-ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYAN---ECSAEQLEAAITE-------- 147 (363)
T ss_pred H-hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCC---CCCHHHHHHhcCh--------
Confidence 7 57777 6666532221110122344566799999888753 5899999998864
Q ss_pred CceEEE-EeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 301 AAGLFV-FPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 301 ~T~LVa-~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+|+++. ++..+|.+|.++|++ +.+.||++|+.+++|++|... +. .+..+++|++++|+||++++ |+ .|+|+.
T Consensus 148 ~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~---~~-~~~~~g~D~~~~S~~K~l~g-p~-~G~l~~ 221 (363)
T TIGR01437 148 KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED---LQ-KYYRLGADLVIYSGAKAIEG-PT-SGLVLG 221 (363)
T ss_pred hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc---hH-HHHHcCCCEEEEeCCcccCC-Cc-eEEEEE
Confidence 466544 555578999999997 556889999999999999732 11 12245799999999998877 88 799998
Q ss_pred eCCCcccccC
Q 002866 379 KKSVMGSLQN 388 (872)
Q Consensus 379 Rk~~i~~L~P 388 (872)
+++.++.+.+
T Consensus 222 ~~~~i~~~~~ 231 (363)
T TIGR01437 222 KKKYIEWVKL 231 (363)
T ss_pred cHHHHHHHHh
Confidence 8777776654
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=163.64 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW- 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~- 276 (872)
.+.+.++.+|+++|+++ +++++|+++|+.+++.++ +++|+.|++.. .+|.+.. ..++..|++++.+|.+.
T Consensus 52 ~~~~~~e~lA~~~g~~~----~~i~~g~~~a~~~~~~~l-~~~gd~Vl~~~-~~h~s~~---~~~~~~g~~~~~~~~~~~ 122 (370)
T TIGR02539 52 PIHDFLEDLAEFLGMDE----ARVTHGAREGKFAVMHAL-CKEGDWVVLDG-LAHYTSY---VAAERAGLNVKEVPHTGH 122 (370)
T ss_pred HHHHHHHHHHHHhCCCc----eEEECChHHHHHHHHHHh-hCCCCEEEECC-cccHHHH---HHHHHcCCEEEEEecCCc
Confidence 57788999999999963 567899999999999988 47899988752 3455443 34677899999999753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+++.++.++|+++|...++ ....++++|++++.+|++|.+.|++ ++..|+++|+++++|++++.|. +++++...++
T Consensus 123 ~~~~~d~~~l~~~l~~~~~-~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~--~~~~~~~~~~ 199 (370)
T TIGR02539 123 PEYKVDPEGYGEVIEEVED-ESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGR--MPVSAKEIGA 199 (370)
T ss_pred ccCCcCHHHHHHHHHHhhh-ccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCC--cCCCHHHcCC
Confidence 2467899999998864211 0112578999999999999999997 5567899999999999999885 5777767789
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|+++.|+||+||. +.++|+++++++.++.|...
T Consensus 200 di~v~s~sK~~~~-~g~~G~l~~~~~~i~~l~~~ 232 (370)
T TIGR02539 200 DFIVGSGHKSMAA-SGPCGVLGMSEEWEDIVLRK 232 (370)
T ss_pred CEEEeeCcccccC-CCCEEEEEECHHHHhhhccc
Confidence 9999999999986 66799999999988877643
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=162.85 Aligned_cols=212 Identities=11% Similarity=0.050 Sum_probs=150.4
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC--CC----chHHHHHHHHHHHHHhcCCCCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG--GA----EKGTVEHDIKTRIMDHLNIPENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg--Np----sS~~~ieeARerIA~lLgA~~dEY~VVFTs 223 (872)
.++|.-+..+..++.++.+.... . .. +..|. .+ ...+..+++++.+++++|++.+ .++||.
T Consensus 22 ~~~l~~g~~~~~~p~~~~~~~~~-------~--~~--~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~--~v~~~~ 88 (398)
T cd00613 22 MSFLGSGTYKHNPPAVIKRNILE-------N--EF--YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVA--NASLQD 88 (398)
T ss_pred cccccccccCCcCcHHHHHHhcc-------c--cC--cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc--ceeccC
Confidence 58888888887766666653221 1 01 11122 11 1246788999999999999765 388888
Q ss_pred CHHHHHHHHHhhCCCC--CCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCC
Q 002866 224 SRGSAFKLLAESYPFH--TNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 224 nATeALnLVaeslpf~--~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|++.+.++....+. +|++|++. +..|.+... |....++.|++++.++++. .+.++.++|++++..
T Consensus 89 ~g~~~~~~~~~~~~~~~~~gd~Vl~~-~~~h~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-------- 158 (398)
T cd00613 89 EATAAAEAAGLAAIRAYHKRNKVLVP-DSAHPTNPAVARTRGEPLGIEVVEVPSDE-GGTVDLEALKEEVSE-------- 158 (398)
T ss_pred chHHHHHHHHHHHHhcccCCCEEEEc-CccCcchHHHHHHhcccCCcEEEEeccCC-CCCcCHHHHHHhcCC--------
Confidence 7776655544443333 48888765 334555543 3333345679999999864 457888999887742
Q ss_pred CceEEEEeCccCcccchhcH-HH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCC-----Cce
Q 002866 301 AAGLFVFPVQSRVTGAKYSY-QW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDP-----TGF 373 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PL-e~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~P-----tGv 373 (872)
+|++|++++.+ .+|.+.|+ +. .+.|+++|+++++|++|..+. .+.+....++|++++|+|||+ . | .|+
T Consensus 159 ~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~--~~~~~~~~~~d~~~~s~~K~~-~-p~g~Ggp~~ 233 (398)
T cd00613 159 EVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT--GLKPPGEYGADIVVGNLQKTG-V-PHGGGGPGA 233 (398)
T ss_pred CeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEecccccc--CCCChHHcCCCEEEeeccccC-C-CCCCCCCce
Confidence 58999999875 79999996 75 567899999999999987765 466667789999999999998 3 4 368
Q ss_pred EEEEEeCCCcccccCC
Q 002866 374 GCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 374 G~LyVRk~~i~~L~P~ 389 (872)
|+||++++.++.+.+.
T Consensus 234 g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 234 GFFAVKKELVRFLPGR 249 (398)
T ss_pred eEEEEhhhhHhhCCCC
Confidence 9999999887776543
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=169.83 Aligned_cols=208 Identities=17% Similarity=0.163 Sum_probs=147.1
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCc-CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHA-LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~-~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
+.+|++|.+.+++|+.+++++.+ +.....+.. .+..-.....++.+++.+|+++|+. ..++++|++.
T Consensus 86 g~v~~tNlg~s~l~~~v~eav~~--------~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae----~a~vv~sgta 153 (464)
T PRK04311 86 GVVLHTNLGRALLSEAAIEAVTE--------AARGYSNLEYDLATGKRGSRDRALAALLCALTGAE----DALVVNNNAA 153 (464)
T ss_pred ccEEeccCCCCCCCHHHHHHHHH--------HHhcccccccchhhcccchHHHHHHHHHHHHhCCC----eEEEECCHHH
Confidence 47888888999999999998643 111100000 0000112356789999999999985 2567788889
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchh---HHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQS---VNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnS---Vl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
|+++++.++ .+|++||++.. +|.. ...+....++.|++++.++.. ...+.++++++|.. +|++
T Consensus 154 Al~l~l~~l--~~GdeVIvs~~-e~~~~ggs~~i~~~~~~~G~~l~~v~~~---~~t~~~dle~aI~~--------~Tkl 219 (464)
T PRK04311 154 AVLLALNAL--AAGKEVIVSRG-ELVEIGGAFRIPDVMRQAGARLVEVGTT---NRTHLRDYEQAINE--------NTAL 219 (464)
T ss_pred HHHHHHHHh--CCCCEEEEcch-hhhhcCcchhhHHHHHHCCcEEEEECCC---CCCCHHHHHHhcCc--------cCeE
Confidence 999988764 68999887632 2221 112334457789999988753 24578888888753 5899
Q ss_pred EEEeCccCc--cc--chhcHH-HHHHHHHCCcEEEeecccc-C--------CCCCccCCCC---CCCCcEEEEcccccCC
Q 002866 305 FVFPVQSRV--TG--AKYSYQ-WMALAQQNHWHVLLDAGSL-G--------PKDMDSLGLS---LFRPDFIITSFYRVFG 367 (872)
Q Consensus 305 Va~p~vSNv--TG--~i~PLe-~I~~Are~G~~VLVDAAQ~-a--------G~~mipLDLs---~l~~DFlv~S~HK~fG 367 (872)
+.+.|.+|. +| ...|++ +++.||++|+.+++|+++. + ++ .+ ++. ++++|++++|+|||+|
T Consensus 220 V~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~--~p-~~~~~l~~GaDiv~fSg~K~Lg 296 (464)
T PRK04311 220 LLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPD--EP-TVQELLAAGVDLVTFSGDKLLG 296 (464)
T ss_pred EEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCC--CC-chhhHHhcCCcEEEecCccccc
Confidence 999999996 55 568997 5678899999999999531 1 11 12 333 3799999999999999
Q ss_pred CCCCceEEEEEeCCCccccc
Q 002866 368 FDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 368 ~~PtGvG~LyVRk~~i~~L~ 387 (872)
+ | ..|++++|++.++.|+
T Consensus 297 G-p-~~G~i~g~~~li~~l~ 314 (464)
T PRK04311 297 G-P-QAGIIVGKKELIARLK 314 (464)
T ss_pred C-C-ceEEEEEcHHHHHHHh
Confidence 8 7 4899999998887775
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=164.60 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=129.6
Q ss_pred CCCchHHHHHHHHHHHHHhcCCC-----------CCCCcEEEeCCHHHHHHH---HHhhCCCC-----------------
Q 002866 191 GGAEKGTVEHDIKTRIMDHLNIP-----------ENEYGLVFTVSRGSAFKL---LAESYPFH----------------- 239 (872)
Q Consensus 191 gNpsS~~~ieeARerIA~lLgA~-----------~dEY~VVFTsnATeALnL---Vaeslpf~----------------- 239 (872)
..|....+...+-.-++++++.. ++...-+||+|+|+|+-+ +|+...+.
T Consensus 123 ~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~ 202 (522)
T TIGR03799 123 TSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL 202 (522)
T ss_pred cCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence 45555677777888888888532 223346899999998654 33322110
Q ss_pred -----CCCeEEEecccCchhHHHHHHHHHHcCc---EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCc-
Q 002866 240 -----TNKKLLTMFDYESQSVNWMAQSAKEKGA---KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQ- 310 (872)
Q Consensus 240 -----~Gd~ILT~~DhEHnSVl~~~~~AkrkGa---eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~v- 310 (872)
++..|+++ +.+|.|+. +.++..|+ +++.||++. +++++.++|+++|....+ .++++|++.++
T Consensus 203 ~~~~~~~~~v~~S-~~~H~S~~---kaa~~lglg~~~v~~vp~d~-~g~~d~~~L~~~i~~~~~----~g~~~~~vvata 273 (522)
T TIGR03799 203 KHYGYDGLAILVS-ERGHYSLG---KAADVLGIGRDNLIAIKTDA-NNRIDVDALRDKCAELAE----QNIKPLAIVGVA 273 (522)
T ss_pred hhccCCceEEEEC-CCchHHHH---HHHHHcCCCcccEEEEEeCC-CCcCCHHHHHHHHHHHHH----CCCCcEEEEEEe
Confidence 01124444 56788775 44555677 799999986 689999999999975321 24667777755
Q ss_pred -cCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCC-----CCCC-CCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 311 -SRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLG-----LSLF-RPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 311 -SNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLD-----Ls~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+++||++.||+. ...|+++|+++||||||.++. +..+ +..+ ++|++++|+|||+++ |.|+|+||+|+.
T Consensus 274 Gtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~--~~~~~~r~~l~gle~aDSit~d~HK~l~~-P~g~G~llvr~~ 349 (522)
T TIGR03799 274 GTTETGNIDPLDEMADIAQELGCHFHVDAAWGGAT--LLSNTYRHLLKGIERADSVTIDAHKQLYV-PMGAGMVLFKDP 349 (522)
T ss_pred cCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHH--HhCHHHHHHhcCchhCCEEEEChhhcCCc-CcccEEEEEeCH
Confidence 568999999985 567899999999999998876 3444 4554 899999999999887 999999999975
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-14 Score=157.60 Aligned_cols=205 Identities=14% Similarity=0.130 Sum_probs=167.0
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES 235 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes 235 (872)
-|=++.++.|+.++.. .+ ..+-.|....++.++++.+..+|+++ +.+.++++.++|.|+...+.+
T Consensus 11 PGP~~v~~~V~~am~~-----------~~---~~h~s~~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~s 75 (383)
T COG0075 11 PGPVPVPPRVLLAMAR-----------PM---VGHRSPDFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVAS 75 (383)
T ss_pred CCCCCCCHHHHHHhcC-----------CC---CCCCCHHHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHh
Confidence 3445677888877432 11 11334555688999999999999997 334678889999999998888
Q ss_pred CCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCccc
Q 002866 236 YPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTG 315 (872)
Q Consensus 236 lpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG 315 (872)
+- .+||++|+...-. =-..|.+.+++.|+++..+...| .-.+++++++++|.+ ++..++|+++|.-.-||
T Consensus 76 l~-~pgdkVLv~~nG~--FG~R~~~ia~~~g~~v~~~~~~w-g~~v~p~~v~~~L~~------~~~~~~V~~vH~ETSTG 145 (383)
T COG0075 76 LV-EPGDKVLVVVNGK--FGERFAEIAERYGAEVVVLEVEW-GEAVDPEEVEEALDK------DPDIKAVAVVHNETSTG 145 (383)
T ss_pred cc-CCCCeEEEEeCCh--HHHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhc------CCCccEEEEEeccCccc
Confidence 73 6899987653210 01478899999999999999998 467899999999973 35688999999999999
Q ss_pred chhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 316 AKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 316 ~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++|++.| +.++++|.+++|||++++|. +++++.++++|+++.+.+|.++. |.|+|++.++++..+.++.
T Consensus 146 vlnpl~~I~~~~k~~g~l~iVDaVsS~Gg--~~~~vd~wgiDv~itgSQK~l~~-PPGla~v~~S~~a~e~~~~ 216 (383)
T COG0075 146 VLNPLKEIAKAAKEHGALLIVDAVSSLGG--EPLKVDEWGIDVAITGSQKALGA-PPGLAFVAVSERALEAIEE 216 (383)
T ss_pred ccCcHHHHHHHHHHcCCEEEEEecccCCC--cccchhhcCccEEEecCchhccC-CCccceeEECHHHHHHHhc
Confidence 99999865 56799999999999999886 69999999999999999999999 8899999999998877753
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=160.56 Aligned_cols=165 Identities=10% Similarity=0.083 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.++.++++++++|++ + ++++++++.|++++.. + +++||+||+... .+.+.. .|...+++.|+++++++..
T Consensus 49 ~~~le~~la~l~g~~---~-~l~~~sG~~al~~~l~-l-l~~Gd~Vl~~~~-~y~~~~~~~~~~~~~~G~~v~~vd~~-- 119 (378)
T TIGR01329 49 RTALESLLAKLDKAD---R-AFAFSSGMAALDVITR-L-LNNGDEIIAGDD-LYGGTDRLLTQVVPRSGVVVVHVDTT-- 119 (378)
T ss_pred HHHHHHHHHHHhCCC---c-EEEECCHHHHHHHHHH-H-hCCCCEEEEcCC-CchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence 578999999999983 2 4455556679998776 3 689999887632 344443 4555677889999988753
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
+.++++++|. ++|++|.+.+.+|.+|.++|++ +++.||++|+.+++|++++.|.. ...+ .+++|
T Consensus 120 ----d~~~le~~i~--------~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~--~~~l-~~g~D 184 (378)
T TIGR01329 120 ----DLDKVKAALG--------PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL--CNPL-ELGAD 184 (378)
T ss_pred ----CHHHHHHhcC--------cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc--CChh-hcCCc
Confidence 5678877774 3689999999999999999998 56788999999999999987752 2223 45899
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCCCc-ccccC
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKSVM-GSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~~i-~~L~P 388 (872)
++++|+||++++ |.| .|+++++++.+ +.+.+
T Consensus 185 i~v~S~tK~l~G-~~~~~~G~v~~~~~~~~~~~~~ 218 (378)
T TIGR01329 185 IVYHSATKFLAG-HSDVMAGVLAVKGEEIAKKVYF 218 (378)
T ss_pred EEEEecceeccC-CccceeEEEEeCcHHHHHHHHH
Confidence 999999999887 777 89999976543 54543
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=155.16 Aligned_cols=169 Identities=12% Similarity=0.011 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++++++|+++|++. .+++|+|+|+|+..++.++ .++|++|++.. ..|.++.... ...|+++++++.++
T Consensus 59 g~i~~~~~~~A~~~ga~~---~~~~~~Gst~a~~~~l~al-~~~gd~Vlv~~-~~h~s~~~~~---~~~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAV-CGPGDKILIDR-NCHKSVINGL---VLSGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCCC---EEEEcCcHHHHHHHHHHHc-CCCCCEEEEeC-CchHHHHHHH---HHCCCEEEEecCcc
Confidence 578999999999999852 4666999999999998887 57899988763 3566665433 34689999887754
Q ss_pred CC-----CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC---CCcc
Q 002866 277 PT-----LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK---DMDS 347 (872)
Q Consensus 277 p~-----g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~---~mip 347 (872)
.. +.++.+++++++... +++++|+++.. |.+|+.+|++ +++.||++|+.+++|+|+.+.. ...+
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~------~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~ 203 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEH------PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP 203 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhC------CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccC
Confidence 32 368999999988642 35888888865 7899999997 5578899999999999987521 1135
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+....++|+++.|+||++++ |++.|+|++++.
T Consensus 204 ~~~~~~~~div~~S~hK~l~g-~~~~~~l~~~~~ 236 (294)
T cd00615 204 SSAAMAGADIVVQSTHKTLPA-LTQGSMIHVKGD 236 (294)
T ss_pred cchhhcCCcEEEEchhcccch-HhHHHHHHhCCC
Confidence 555567899999999999987 888899988776
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=156.38 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....++|++||+++|++ + ++.++|+++|++.+..++ +++||+|++. +.+|.++......+ +.+...++
T Consensus 83 ~~~~~le~~ia~~~g~~-~---~ii~~~~~~a~~~~~~~l-~~~gd~vi~~-~~~~~s~~~~~~~~---~~~~~~~~--- 150 (393)
T TIGR01822 83 DIHKELEAKIAAFLGTE-D---TILYASCFDANGGLFETL-LGAEDAIISD-ALNHASIIDGVRLC---KAKRYRYA--- 150 (393)
T ss_pred HHHHHHHHHHHHHhCCC-c---EEEECchHHHHHHHHHHh-CCCCCEEEEe-ccccHHHHHHHHhc---CCceEEeC---
Confidence 46688999999999983 2 455578899999999888 6899998876 44677776544433 33332221
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc-------cC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD-------SL 348 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi-------pL 348 (872)
.++.++|++.|....+ ...+|++|++++++|+||.+.|++ +++.|+++|+++++|++|..|.... .+
T Consensus 151 ---~~d~~~l~~~i~~~~~--~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~ 225 (393)
T TIGR01822 151 ---NNDMADLEAQLKEARA--AGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELC 225 (393)
T ss_pred ---CCCHHHHHHHHHhhhh--cCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhc
Confidence 2678999988874211 123689999999999999999997 4567899999999999997664100 12
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++. .++|++++|+||++++ +. .|+++.+++.++.+.
T Consensus 226 ~~~-~~~di~~~s~sK~l~g-~r-~G~~~~~~~~~~~l~ 261 (393)
T TIGR01822 226 GVM-GRVDIITGTLGKALGG-AS-GGFTTARKEVVELLR 261 (393)
T ss_pred CCC-CCCeEEEEEChHHhhC-CC-cEEEEeCHHHHHHHH
Confidence 332 2689999999999986 54 599998888776664
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=149.95 Aligned_cols=230 Identities=13% Similarity=0.016 Sum_probs=150.3
Q ss_pred hHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC
Q 002866 135 KIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg 211 (872)
.++.+.+.-.|.... .-|+.|--+++.+..++-.+.. ..+..+. ......|....+..++=+-+++++|
T Consensus 65 ~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~------~~~n~~~--~~~~~sp~~~~lE~~vi~wl~~l~g 136 (490)
T PLN02880 65 VLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLS------AGLNIVG--FSWITSPAATELEMIVLDWLAKLLN 136 (490)
T ss_pred HHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHH------HhhccCC--cccccCcccHHHHHHHHHHHHHHhC
Confidence 445555433454432 4566666666656555543210 1111111 0112456666788889999999999
Q ss_pred CCCCC-----CcEEEeCCHHHHHHHH---HhhC-----CCCC-CCeEEEecccCchhHHHHHHHHHHcCc---EEEEEec
Q 002866 212 IPENE-----YGLVFTVSRGSAFKLL---AESY-----PFHT-NKKLLTMFDYESQSVNWMAQSAKEKGA---KVYSAWF 274 (872)
Q Consensus 212 A~~dE-----Y~VVFTsnATeALnLV---aesl-----pf~~-Gd~ILT~~DhEHnSVl~~~~~AkrkGa---eV~~Vpv 274 (872)
.+.+. -.-+||+|+|+|+-+. |+.. .+.. ..-++...+.-|.|+. +.|.-.|+ .|+.||+
T Consensus 137 ~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~---Kaa~~lGlg~~~v~~Vp~ 213 (490)
T PLN02880 137 LPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ---KACQIAGIHPENCRLLKT 213 (490)
T ss_pred CCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH---HHHHHcCCCHHHEEEeec
Confidence 97531 1478999999986442 2211 1111 1224444455577665 33444676 3788998
Q ss_pred cC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC----
Q 002866 275 KW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL---- 348 (872)
Q Consensus 275 d~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL---- 348 (872)
+. .+++++.+.|++.|.+.++ .....-+|+-++-+-.||.+-|++. ...|+++|+++|||||+.++. ...
T Consensus 214 d~~~~~~md~~~L~~~i~~~~~--~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~--~~~~~~~ 289 (490)
T PLN02880 214 DSSTNYALAPELLSEAISTDLS--SGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSA--CICPEYR 289 (490)
T ss_pred CCCcCCcCCHHHHHHHHHHHHH--CCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHH--HhCHHHH
Confidence 74 3578999999999975432 2223567888888899999999985 567899999999999987763 211
Q ss_pred -CCCC-CCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 349 -GLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 349 -DLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
.+.. .++|++++++|||++. |.|+|+||+|+
T Consensus 290 ~~l~gie~aDSit~d~HKwl~~-P~~~g~llvr~ 322 (490)
T PLN02880 290 HYIDGVEEADSFNMNAHKWFLT-NFDCSLLWVKD 322 (490)
T ss_pred HHhcCchhcCEEEECchhhcCC-CccEEEEEEeC
Confidence 2444 3799999999999988 99999999996
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=160.04 Aligned_cols=166 Identities=10% Similarity=0.026 Sum_probs=129.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGa 267 (872)
.++||.. +..-++||++-|+. ..+++++++.|++.++.++ +++||+||+... .|.... .+.+.+++.|+
T Consensus 58 R~~nPt~----~~le~~la~LEg~~----~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~-~Yg~t~~l~~~~l~~~Gi 127 (395)
T PRK08114 58 RRGTLTH----FSLQEAMCELEGGA----GCALYPCGAAAVANAILAF-VEQGDHVLMTGT-AYEPTQDFCSKILSKLGV 127 (395)
T ss_pred CCCChhH----HHHHHHHHHHhCCC----eEEEEhHHHHHHHHHHHHH-cCCCCEEEEeCC-CcHHHHHHHHHHHHhcCc
Confidence 4578863 34566888888873 2566777999999988887 789999887643 333333 33455788899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHC--CcEEEeeccccCCCC
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQN--HWHVLLDAGSLGPKD 344 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~--G~~VLVDAAQ~aG~~ 344 (872)
+|.+++. .+.++++++|.. +|+||.+.+.+|++|.+.||+ +++.||++ |+.++||++++.|.
T Consensus 128 ~v~~vd~------~d~~~l~~~l~~--------~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~- 192 (395)
T PRK08114 128 TTTWFDP------LIGADIAKLIQP--------NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV- 192 (395)
T ss_pred EEEEECC------CCHHHHHHhcCC--------CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc-
Confidence 9998763 256778877752 589999999999999999998 55678987 49999999999996
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCCC--ceEEEEEeCCC
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDPT--GFGCLLIKKSV 382 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~Pt--GvG~LyVRk~~ 382 (872)
-++..++++|+++.|+|||+++ |. +.|+++.+++.
T Consensus 193 --~~~pl~~GaDivv~S~tKyl~G-hsdv~~G~v~~~~~~ 229 (395)
T PRK08114 193 --LFKALDFGIDISIQAGTKYLVG-HSDAMIGTAVANARC 229 (395)
T ss_pred --ccCHHHcCCcEEEEcCcccccC-CCcceeEEEEcCHHH
Confidence 3888889999999999999888 65 77877765543
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=160.03 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+..++++|+++|+. +.|+|++|+ +|+.+++.++ +++||+||++ .++|.+. ..+.+.+++.|+++.+++ +.
T Consensus 70 t~~~le~~la~l~g~~---~~v~fsSG~-~Ai~~al~~l-l~~Gd~VI~~-~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~ 142 (437)
T PRK05613 70 TVEALENRIASLEGGV---HAVAFASGQ-AAETAAILNL-AGAGDHIVTS-PRLYGGTETLFLVTLNRLGIEVTFVE-NP 142 (437)
T ss_pred HHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHh-cCCCCEEEEC-CCccHHHHHHHHHHHHhcCeEEEEEC-CC
Confidence 3578999999999984 357777766 7877777776 6889998876 3455555 334466778899999987 21
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
.+.++++++|.. +|++|.+.+.+|.+|.++||+. .+.||++|+.+++|++|+.|.. .+.-++++
T Consensus 143 ----~d~e~l~~~l~~--------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~---~~p~~~Ga 207 (437)
T PRK05613 143 ----DDPESWQAAVQP--------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL---VRPLELGA 207 (437)
T ss_pred ----CCHHHHHHhCCc--------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc---cChHHhCC
Confidence 267888877753 5888888899999999999985 5678999999999999988852 33335799
Q ss_pred cEEEEcccccCCCCCCceEEEEEeC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
|++++|+|||+|+.-.|+|.+++..
T Consensus 208 Divv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 208 DVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred CEEEeeccceecCCCcceeEEEEec
Confidence 9999999999985114568888744
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=157.97 Aligned_cols=173 Identities=10% Similarity=0.021 Sum_probs=122.1
Q ss_pred HHHHH-HHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-H-HHHHHHcCcEEEEEe
Q 002866 197 TVEHD-IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-M-AQSAKEKGAKVYSAW 273 (872)
Q Consensus 197 ~~iee-ARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~-~~~AkrkGaeV~~Vp 273 (872)
+.+++ +|+.+++++|++.. .|+||+ +|+|+.+++.++ +++||+|++.. .+|++... + .......|+++..++
T Consensus 70 ~~~e~~~~~~la~~~g~~~~--~i~~~s-gt~al~~~l~~l-~~~gd~Vl~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (416)
T PRK00011 70 DVVEQLAIDRAKELFGAEYA--NVQPHS-GSQANAAVYFAL-LKPGDTILGMD-LAHGGHLTHGSPVNFSGKLYNVVSYG 144 (416)
T ss_pred HHHHHHHHHHHHHHhCCCce--eeecCC-chHHHHHHHHHh-cCCCCEEEEec-cccCCccccccccccccceeeEeecC
Confidence 45555 89999999999754 366665 588999999988 78999988653 23443321 1 111234578888888
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCC---CccCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKD---MDSLG 349 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~---mipLD 349 (872)
++..++.++.++++++|... ++++|.++. +.+|...|++. .+.|+++|+++++|++|++|.- ..+.+
T Consensus 145 ~~~~~~~~d~~~l~~~i~~~-------~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~ 215 (416)
T PRK00011 145 VDEETGLIDYDEVEKLALEH-------KPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSP 215 (416)
T ss_pred cCcccCCcCHHHHHHHHHhc-------CCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCC
Confidence 87545789999999988631 477887753 45788889974 5678999999999999877641 01344
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEe-CCCccccc
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
+. ++|++++|+||++++ |.|. +++.+ ++..+.++
T Consensus 216 ~~--~~di~~~S~~K~l~g-~~gg-~i~~~~~~~~~~l~ 250 (416)
T PRK00011 216 VP--HADVVTTTTHKTLRG-PRGG-LILTNDEELAKKIN 250 (416)
T ss_pred CC--CCcEEEecCCcCCCC-CCce-EEEeCCHHHHHHHH
Confidence 54 789999999999876 7764 44444 45555443
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=153.03 Aligned_cols=211 Identities=12% Similarity=0.006 Sum_probs=135.1
Q ss_pred cCCCCCCcHHHHHHhhhcccccHHHHH-HhhccCcCcCCCchHHHHH-HHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHH
Q 002866 155 YCGFGLFSYIQTLHYWESSTFSLSEIT-ANLSNHALYGGAEKGTVEH-DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLL 232 (872)
Q Consensus 155 yAAtgp~p~~VieA~~e~~~F~ls~i~-~nL~~~~~ygNpsS~~~ie-eARerIA~lLgA~~dEY~VVFTsnATeALnLV 232 (872)
+++-+++++.|.+++.+. .. ..+. .+.. ...|+.......++ .+|+.+++++|++.. .|++| ++|+|+.++
T Consensus 25 ~~~~~~~~~~v~~a~~~~--~~-~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~--~v~~~-sgt~a~~~~ 97 (402)
T cd00378 25 IASENFTSPAVMEAMGSD--LT-NKYAEGYPG-KRYYGGCEYVDEIEDLAIERAKKLFGAEYA--NVQPH-SGSQANLAV 97 (402)
T ss_pred eccCCcCCHHHHHHhccc--cc-ccccCCCCC-CcccCCchHHHHHHHHHHHHHHHHhCCCce--eeecC-CcHHHHHHH
Confidence 456667788888875421 00 0000 0000 01121111123344 478889999999753 35555 568999999
Q ss_pred HhhCCCCCCCeEEEecccCchhHHHHHH--HHHHcCcEEEEEeccCC--CCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 233 AESYPFHTNKKLLTMFDYESQSVNWMAQ--SAKEKGAKVYSAWFKWP--TLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 233 aeslpf~~Gd~ILT~~DhEHnSVl~~~~--~AkrkGaeV~~Vpvd~p--~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+.++ +++||+|++.. .+|.+...... .++..|+++..++++.. ++.++.+++++++.. ++++++.++
T Consensus 98 l~~l-~~~Gd~Vl~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-------~~~~~v~~~ 168 (402)
T cd00378 98 YFAL-LEPGDTIMGLD-LSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE-------FKPKLIVAG 168 (402)
T ss_pred HHHh-cCCCCEEEEec-CccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh-------CCCCEEEec
Confidence 9998 68999987653 23343322211 24557888888877654 578999999998853 247788776
Q ss_pred CccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC---CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 309 VQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD---MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 309 ~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~---mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
+. .+|+..|++ ++..|+++|+++++|++|+.|.. ..+.++. ++|++++|+||+|++ |.|.++++.+++..+
T Consensus 169 ~~--~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G-~~gg~i~~~~~~~~~ 243 (402)
T cd00378 169 AS--AYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRG-PRGGLILTRKGELAK 243 (402)
T ss_pred Cc--ccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCC-CCceEEEeccHHHHH
Confidence 54 457888997 55678999999999999876530 0133444 689999999999966 777555543336655
Q ss_pred cc
Q 002866 385 SL 386 (872)
Q Consensus 385 ~L 386 (872)
.+
T Consensus 244 ~l 245 (402)
T cd00378 244 KI 245 (402)
T ss_pred HH
Confidence 54
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=152.17 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=127.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.+|||. .....++||++.|+. .+++|+|+++|+.+++.++ +++||+||+....-+.....+...+++.|++
T Consensus 46 r~gnPt----~~~lE~~lA~l~g~~----~~~~~~sG~~Ai~~al~al-l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~ 116 (377)
T TIGR01324 46 RRGTLT----HFALQDAMCELEGGA----GCYLYPSGLAAVTNSILAF-VKAGDHVLMVDSAYEPTRYFCDIVLKRMGVD 116 (377)
T ss_pred CCCCcc----HHHHHHHHHHHhCCC----cEEEECcHHHHHHHHHHHh-cCCCCEEEEcCCCcHHHHHHHHHHHHhcCcE
Confidence 357775 356788999999974 3889999999999999888 7899998865322123222222345667998
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++.. +.++++++|. ++|++|.+.+.+|.+|.+.|++ +++.||++|+++++|++++.|. .
T Consensus 117 v~~~d~~------~~e~l~~~i~--------~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~--~- 179 (377)
T TIGR01324 117 ITYYDPL------IGEDIATLIQ--------PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL--L- 179 (377)
T ss_pred EEEECCC------CHHHHHHhcC--------CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc--c-
Confidence 8876532 1256766664 3699999999999999999997 5578899999999999999886 2
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
.+.-++++|+++.|++||+|+ +.+ .|+++.+++.++.+
T Consensus 180 ~~pl~~gaDivv~S~tK~l~G-~~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 180 FKPLEHGVDISIQAGTKYLVG-HSDIMIGTVVANARTWDQL 219 (377)
T ss_pred cCccccCceEEEecCceeccC-CCCceEEEEEeCHHHHHHH
Confidence 333457999999999999987 554 46677666544433
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=150.95 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=124.3
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGa 267 (872)
.|+||.. ...+++||++.|+ + .+++|+|+++|+.++..++ +++||+|++... .+.. +..+...+.+.|+
T Consensus 49 R~~npt~----~~Le~~lA~leg~--e--~ivvt~gg~~Ai~~~l~al-l~~Gd~Il~~~~-~y~~~~~~~~~~~~~~gi 118 (388)
T PRK08861 49 RSGNPNR----GLLEQTLSELESG--K--GAVVTNCGTSALNLWVSAL-LGPDDLIVAPHD-CYGGTYRLFNTRANKGDF 118 (388)
T ss_pred CCCCchH----HHHHHHHHHHhCC--C--eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCC-chHHHHHHHHHHHhcCCe
Confidence 5678863 5788899999996 2 4999999999999999988 689999887643 2333 3334344556788
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..++. .+.+++++++.. +|++|.+...+|.||.++|++ +++.|+++|+.+++|.++..|....
T Consensus 119 ~v~~vd~------~d~e~l~~~i~~--------~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~ 184 (388)
T PRK08861 119 KVQFVDQ------SDAAALDAALAK--------KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK 184 (388)
T ss_pred EEEEECC------CCHHHHHHhcCc--------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence 8887752 367778777642 589999999999999999998 4567899999999999988764223
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc-eEE-EEEe
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG-FGC-LLIK 379 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG-vG~-LyVR 379 (872)
|++ +++|+++.|+|||+++ |.+ +|. ++.+
T Consensus 185 pl~---~GaDivv~S~tK~l~G-~~d~~gG~i~~~ 215 (388)
T PRK08861 185 PLE---LGADFVIHSTTKYING-HSDVIGGVLITK 215 (388)
T ss_pred Ccc---cCCCEEEeecceeccC-CCcceeEEEEec
Confidence 443 5899999999999998 655 344 4443
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=154.68 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=145.7
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCc-EEEeCCHHHHHHHHH
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYG-LVFTVSRGSAFKLLA 233 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~-VVFTsnATeALnLVa 233 (872)
++-..+++.|++++- +.|.- .+.......-+|+ +....++..-+.+++.++||++..+|. =|=--+++.|+..|.
T Consensus 155 ASEN~~S~av~~alg--S~ltn-kYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~ 231 (586)
T PLN02271 155 ASENFVCRAVMEALG--SHLTN-KYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVY 231 (586)
T ss_pred cccccCCHHHHHHhc--Ccccc-cCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHH
Confidence 555678888888742 12210 0111000001222 222235666789999999999875441 122348889999999
Q ss_pred hhCCCCCCCeEEEec-ccC-chhHHHHH---HHHHHcCcEEEEEe--ccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 234 ESYPFHTNKKLLTMF-DYE-SQSVNWMA---QSAKEKGAKVYSAW--FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 234 eslpf~~Gd~ILT~~-DhE-HnSVl~~~---~~AkrkGaeV~~Vp--vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
.++ +++||.|++.. +|- |-+..... ..+...|+.+..++ ++..++.||.++|++.+.. .+++||+
T Consensus 232 ~AL-l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~-------~rPKLII 303 (586)
T PLN02271 232 TGL-LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD-------FRPKILI 303 (586)
T ss_pred HHh-cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh-------cCCeEEE
Confidence 898 89999998742 222 21111100 22344677777777 6656789999999986543 3689999
Q ss_pred EeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCC---CCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 307 FPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLS---LFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs---~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+.+.++. ..+|++.+ ++|+++|+++++|+||.+|. +..++- ...+|++++++||||.+ |.| |+++++++.
T Consensus 304 ~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGL--Ia~g~~~sP~~~aDvvt~TTHKtLrG-PrG-G~I~~r~~~ 377 (586)
T PLN02271 304 CGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGL--VAAKECVNPFDYCDIVTSTTHKSLRG-PRG-GIIFYRKGP 377 (586)
T ss_pred ECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccc--cccCcCCCCCcCCcEEEeCCcccCCC-CCc-eEEEecccc
Confidence 9888887 77889855 56799999999999999996 655532 23699999999999988 999 888888887
Q ss_pred cccccC
Q 002866 383 MGSLQN 388 (872)
Q Consensus 383 i~~L~P 388 (872)
...+++
T Consensus 378 ~~~~~g 383 (586)
T PLN02271 378 KLRKQG 383 (586)
T ss_pred cccccC
Confidence 654543
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=143.71 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....+++|+.+++++|++ + ++++.++|+++..++..+ +++|++|++. +..|.++. ..++..|+++..++.
T Consensus 45 ~~~~~~l~~~la~~~~~~-~---~iv~~sg~~a~~~~~~~~-~~~gd~Vl~~-~~~~~~~~---~~~~~~g~~~~~~~~- 114 (349)
T cd06454 45 SDLHEELEEELAEFHGKE-A---ALVFSSGYAANDGVLSTL-AGKGDLIISD-SLNHASII---DGIRLSGAKKRIFKH- 114 (349)
T ss_pred chHHHHHHHHHHHHhCCC-C---EEEeccHHHHHHHHHHHh-cCCCCEEEEe-hhhhHHHH---HHHHHcCCceEEecC-
Confidence 356789999999999985 2 344555577777666555 4789998875 44566543 334567998887642
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc-------c
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD-------S 347 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi-------p 347 (872)
++.++++++|.... ...++++|++++.+|.||++.|++ ++..|+++|+++++|+++..|.- . .
T Consensus 115 -----~~~~~le~~i~~~~---~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~-~~~~~~~~~ 185 (349)
T cd06454 115 -----NDMEDLEKLLREAR---RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVY-GPHGRGVEE 185 (349)
T ss_pred -----CCHHHHHHHHHHhh---ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEcccccccc-CCCCCChhh
Confidence 46788888886421 113578999999999999999997 56788999999999999876531 1 1
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++....++|+++.|+||+|| +.| |+++.+++.++.+.
T Consensus 186 ~~~~~~~~~i~~~s~sK~~~--~~g-G~i~~~~~~~~~~~ 222 (349)
T cd06454 186 FGGLTDDVDIIMGTLGKAFG--AVG-GYIAGSKELIDYLR 222 (349)
T ss_pred hccccccCcEEEeechhhhc--ccC-CEEECCHHHHHHHH
Confidence 33445688999999999999 456 77777777665554
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=151.79 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=117.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGae 268 (872)
++||. ....|++||++.++. .+++|+|+++|+++++.++ +++||+||+... .+..... +...+++.|++
T Consensus 58 ~~npt----~~~Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~-~Y~~t~~l~~~~l~~~Gi~ 127 (394)
T PRK09028 58 RGTPT----HFAFQAAIVELEGGA----GTALYPSGAAAISNALLSF-LKAGDHLLMVDS-CYEPTRDLCDKILKGFGIE 127 (394)
T ss_pred CCCch----HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEECC-CcHHHHHHHHHhhhhcceE
Confidence 45664 347889999998873 3899999999999999887 789999887632 2322322 22345668999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++.+ +.++++++|. ++|+||.+.+.+|.||.+.|++ +++.||++|+++++|.+++.|..
T Consensus 128 v~~v~~~------~~e~l~~~l~--------~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~--- 190 (394)
T PRK09028 128 TTYYDPM------IGEGIRELIR--------PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN--- 190 (394)
T ss_pred EEEECCC------CHHHHHHhcC--------cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc---
Confidence 8876532 3466776664 3699999999999999999998 56788999999999999988842
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
++.-++++|+++.|+|||+++
T Consensus 191 ~~Pl~~GaDivv~S~tK~l~G 211 (394)
T PRK09028 191 SRPFEMGVDISIQAATKYIVG 211 (394)
T ss_pred CCccccCceEEEEeCCeEecC
Confidence 333357999999999999987
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=144.45 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=143.6
Q ss_pred ceecccCCC-CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGF-GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAt-gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.|.|-.+-. .+.|+.+++++.+ .... ...|+.+. ..+.|+.||+++|++++ +|+||+|+|++
T Consensus 21 ~i~l~~~~~~~~~~~~~~~a~~~--------~~~~---~~~y~~~~----~~~lr~~ia~~~~~~~~--~i~~~~G~~~~ 83 (346)
T TIGR01141 21 VIKLNSNENPFGPPPKAKEALRA--------EADK---LHRYPDPD----PAELKQALADYYGVDPE--QILLGNGSDEI 83 (346)
T ss_pred eEEccCCCCCCCCCHHHHHHHHH--------hHHH---hhcCCCCC----HHHHHHHHHHHhCcChH--HEEEcCCHHHH
Confidence 566654443 3356677777543 1111 12455544 26899999999999776 59999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+.+++.++. ++|++|++.. ..+ ..+...++..|+++..++++. ++.++.+++++++. +++++|.++
T Consensus 84 l~~~~~~l~-~~gd~v~~~~-p~y---~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~--------~~~~~v~l~ 149 (346)
T TIGR01141 84 IELLIRAFL-EPGDAVLVPP-PTY---SMYEISAKIHGAEVVKVPLDE-DGQLDLEDILVAID--------DKPKLVFLC 149 (346)
T ss_pred HHHHHHHhc-CCCCEEEEcC-CCH---HHHHHHHHHcCCeEEEeccCC-CCCCCHHHHHHhcC--------CCCCEEEEe
Confidence 999988874 7889988763 222 233445677899999999875 46788999987653 258899999
Q ss_pred CccCcccchhcHHHH-HHHHHC--CcEEEeecccc--CCCCCccCCC-CCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 309 VQSRVTGAKYSYQWM-ALAQQN--HWHVLLDAGSL--GPKDMDSLGL-SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 309 ~vSNvTG~i~PLe~I-~~Are~--G~~VLVDAAQ~--aG~~mipLDL-s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+.+|.||..+|++.+ +.++.. ++++++|.++. .+.. ..++. ...+.++++.|++|+||.+..++|++++++++
T Consensus 150 ~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~ 228 (346)
T TIGR01141 150 SPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEP-STLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEI 228 (346)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCc-cHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHH
Confidence 999999999999754 455544 99999999965 2110 01111 12334577899999997411237999998887
Q ss_pred cccccC
Q 002866 383 MGSLQN 388 (872)
Q Consensus 383 i~~L~P 388 (872)
++.+++
T Consensus 229 ~~~~~~ 234 (346)
T TIGR01141 229 IDALNK 234 (346)
T ss_pred HHHHHh
Confidence 777764
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=147.08 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
...+.|+++++++|++ +.| ++.|+|+|+.+++.++.+++||+|++.. ..+.+. ...++..|++++.++++..
T Consensus 30 ~~~~le~~la~~~g~~---~~v-~~~sgt~al~~~l~al~~~~Gd~Viv~~-~~~~~~---~~~~~~~G~~~~~~~~~~~ 101 (380)
T TIGR03588 30 TVPAFEEALAEYVGAK---YAV-AFNSATSALHIACLALGVGPGDRVWTTP-ITFVAT---ANCALYCGAKVDFVDIDPD 101 (380)
T ss_pred hHHHHHHHHHHHHCCC---eEE-EEcCHHHHHHHHHHHcCCCCCCEEEeCC-cchHHH---HHHHHHcCCEEEEEecCCC
Confidence 3578999999999984 234 4558999999999998888999988763 333333 3445678999999999755
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC-
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP- 355 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~- 355 (872)
++.++.+++++.|... ..++|++|.+++ .+|...|++ +++.|+++|+.+++|++|+.|. .++...++.
T Consensus 102 ~~~~d~~~l~~~i~~~----~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~---~~~~~~~g~~ 171 (380)
T TIGR03588 102 TGNIDEDALEKKLAAA----KGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGA---EYGGKPVGNC 171 (380)
T ss_pred cCCcCHHHHHHHhhcc----cCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccC---ccCCEeCCCc
Confidence 6678999999988632 113578877654 589999997 5677899999999999999986 256666677
Q ss_pred ---cEEEEccc--ccCCCCCCceEEEEEeCCCccccc
Q 002866 356 ---DFIITSFY--RVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 ---DFlv~S~H--K~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|+.++|+| |+++. |.|-.+++.+++..+.++
T Consensus 172 ~~~d~~~~S~~~~K~~~~-~~GG~v~~~~~~~~~~~~ 207 (380)
T TIGR03588 172 RYADATVFSFHPVKIITT-AEGGAVTTNDEELAERMR 207 (380)
T ss_pred cccceEEEecCCCCcccc-cCceEEEECCHHHHHHHH
Confidence 99999999 88875 433223332344445444
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=148.52 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=127.4
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCc-hhHHHHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYES-QSVNWMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEH-nSVl~~~~~AkrkGae 268 (872)
++||. .....++||++.|+. ..++|+|++.|+..++.++ +++||+|++... .| .....+...+++.|++
T Consensus 61 ~~~p~----~~~Le~~lA~leg~~----~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~-~y~~t~~~~~~~~~~~Gv~ 130 (431)
T PRK08248 61 IMNPT----TDVFEKRIAALEGGI----GALAVSSGQAAITYSILNI-ASAGDEIVSSSS-LYGGTYNLFAHTLPKLGIT 130 (431)
T ss_pred CCCch----HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccC-chhhHHHHHHHHHHhCCEE
Confidence 45664 356778899999963 2678999999999888777 688999887642 23 3344555667889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++.++.. +.++++++|.. +|++|.+.+.+|.||.++|++ +++.||++|+.+++|++++.|.. .
T Consensus 131 v~~vd~~------d~e~l~~ai~~--------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~--~ 194 (431)
T PRK08248 131 VKFVDPS------DPENFEAAITD--------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL--L 194 (431)
T ss_pred EEEECCC------CHHHHHHhcCC--------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc--C
Confidence 9988752 57888877742 589999999999999999997 45678999999999999887652 3
Q ss_pred CCCCCCCCcEEEEcccccCCCCCC-ceEEEEEeCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPT-GFGCLLIKKS 381 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~Pt-GvG~LyVRk~ 381 (872)
.++ ++++|+++.|+|||+|+ |. -+|.+++...
T Consensus 195 ~pl-~~gaDivv~S~tK~lgg-~g~~~Gg~v~~~~ 227 (431)
T PRK08248 195 RPI-EHGADIVVHSATKFIGG-HGTSIGGVIVDSG 227 (431)
T ss_pred Chh-HcCCCEEEEcCccccCC-CCCceEEEEEeCC
Confidence 334 57999999999999996 43 2888888654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=145.61 Aligned_cols=208 Identities=15% Similarity=0.122 Sum_probs=145.6
Q ss_pred cCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeC
Q 002866 145 LHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTV 223 (872)
Q Consensus 145 P~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTs 223 (872)
|.....+|||.+.... +|+.+++++.+ ... . ...|+.+. ..+.|+.|++++|++++ +|++|+
T Consensus 40 ~~~~~~i~l~~~~~~~~~~~~~~~a~~~-------~~~-~---~~~Y~~~~----~~~Lr~aia~~~~v~~e--~I~it~ 102 (370)
T PRK09105 40 PAAEGAVFLNANECPLGPSPAARDAAAR-------SAA-L---SGRYDLEL----EDDLRTLFAAQEGLPAD--HVMAYA 102 (370)
T ss_pred CCCCCcEEecCCCCCCCCCHHHHHHHHH-------HHH-H---hcCCCCch----HHHHHHHHHHHhCcChh--hEEEcC
Confidence 3345689999998764 56777776432 111 1 12354332 56899999999999887 499999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCce
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+++++.+++..+ .++||+|++. +..+. .....++..|+++..+|.+. +..++.+++++.. ++++
T Consensus 103 Gs~~ai~~~~~~l-~~~gd~Vli~-~P~y~---~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~---------~~~~ 167 (370)
T PRK09105 103 GSSEPLNYAVLAF-TSPTAGLVTA-DPTYE---AGWRAADAQGAPVAKVPLRA-DGAHDVKAMLAAD---------PNAG 167 (370)
T ss_pred ChHHHHHHHHHHH-cCCCCEEEEe-CCChH---HHHHHHHHcCCeEEEecCCC-CCCCCHHHHHhcC---------CCCC
Confidence 9999999999988 4689998765 32223 33456777899999998864 4567777775431 2478
Q ss_pred EEEEeCccCcccchhcHHHHHHH---HHCCcEEEeeccc--cCCCCCccCCCCCCCCcEE-EEcccccCCCCCCc--eEE
Q 002866 304 LFVFPVQSRVTGAKYSYQWMALA---QQNHWHVLLDAGS--LGPKDMDSLGLSLFRPDFI-ITSFYRVFGFDPTG--FGC 375 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PLe~I~~A---re~G~~VLVDAAQ--~aG~~mipLDLs~l~~DFl-v~S~HK~fG~~PtG--vG~ 375 (872)
++.++.-+|.||..+|.+.+..+ +++++++++|.+. +.+. ...+++.....+.+ +.|+-|.|| ..| +|+
T Consensus 168 ~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~-~s~~~~~~~~~~vi~~~SfSK~~g--~~GlRiG~ 244 (370)
T PRK09105 168 LIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDA-PSVVDLVAQRKDLIVLRTFSKLYG--MAGMRLGL 244 (370)
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccC-cchHHHHhhCCCEEEEecccHhhc--CCccceee
Confidence 99999999999999999855432 2458999999985 2221 01234433455644 458889999 457 999
Q ss_pred EEEeCCCccccc
Q 002866 376 LLIKKSVMGSLQ 387 (872)
Q Consensus 376 LyVRk~~i~~L~ 387 (872)
++..++.++.+.
T Consensus 245 ~v~~~~~i~~l~ 256 (370)
T PRK09105 245 AAARPDLLAKLA 256 (370)
T ss_pred eecCHHHHHHHH
Confidence 998877776664
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=148.97 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=126.4
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGae 268 (872)
|+||. ++..++++|+++|++. .+.++|++.|+.++..++ +++||+||+... .+... ..+...++..|++
T Consensus 62 ~~~p~----~~~le~~lA~l~g~~~----~i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~-~y~~t~~~~~~~~~~~G~~ 131 (403)
T PRK07503 62 ISNPT----LALLEQRMASLEGGEA----AVALASGMGAITATLWTL-LRPGDEVIVDQT-LYGCTFAFLHHGLGEFGVT 131 (403)
T ss_pred CCCch----HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHH-cCCCCEEEEccC-ccchHHHHHHHHHhhCCEE
Confidence 45554 5678899999999953 355667889999998877 689999887643 23323 3334556778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++++ ++++++++|.. +|++|.+...+|.||.+.|++ +++.|+++|+.+++|.+++.+....+
T Consensus 132 v~~vd~~------d~~~l~~~i~~--------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~ 197 (403)
T PRK07503 132 VRHVDLT------DPAALKAAISD--------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP 197 (403)
T ss_pred EEEeCCC------CHHHHHHhcCc--------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 9988753 56778777742 589999999999999999997 55678999999999999876642123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
+ .+++|++++|++|++|+ |.+ .|+++.+++.++.+
T Consensus 198 l---~~g~Di~v~S~tK~l~g-~gd~~gG~v~~~~~l~~~l 234 (403)
T PRK07503 198 L---ELGADLVVHSATKYLGG-HGDITAGLVVGGKALADRI 234 (403)
T ss_pred h---hhCCCEEEccccccccC-CCceeEEEEEcCHHHHHHH
Confidence 3 36899999999999996 443 67777666555444
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=146.84 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=119.1
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
+|||. .....++||++.|+.. .|+|++| +.|+..+..++ +++||+||+... .+.+...+...+++.|+++
T Consensus 44 ~g~p~----~~~lE~~la~leg~~~---~v~~ssG-~~Ai~~~l~al-l~~Gd~Vv~~~~-~y~~t~~~~~~l~~~G~~v 113 (397)
T PRK05939 44 QGTPT----TAALEAKITKMEGGVG---TVCFATG-MAAIAAVFLTL-LRAGDHLVSSQF-LFGNTNSLFGTLRGLGVEV 113 (397)
T ss_pred CCCHH----HHHHHHHHHHHhCCCe---EEEeCCH-HHHHHHHHHHH-cCCCCEEEECCC-ccccHHHHHHHHHhcCCEE
Confidence 46664 4578889999999853 4766665 89999988887 689999887643 2333333334467789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
+++++. +.++++++|. ++|++|.+.+.+|.||.+.|++ +++.||++|+++++|++|+.|. .+
T Consensus 114 ~~v~~~------d~e~l~~~l~--------~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~---~~ 176 (397)
T PRK05939 114 TMVDAT------DVQNVAAAIR--------PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW---LF 176 (397)
T ss_pred EEECCC------CHHHHHHhCC--------CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc---cc
Confidence 988752 5678887774 3689999999999999999997 5677899999999999998875 46
Q ss_pred CCCCCCCcEEEEcccccCCC
Q 002866 349 GLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~ 368 (872)
+...+++|+++.|++|+|++
T Consensus 177 ~~~~~gaDivv~S~sK~~~g 196 (397)
T PRK05939 177 RPKDVGASLVINSLSKYIAG 196 (397)
T ss_pred CccccCCEEEEecCeecccC
Confidence 66677999999999999996
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=147.17 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
.....++||++.|+.. .++++++++|+.+++.++ +++|++||+.....+.....+...+++.|+++++++..
T Consensus 65 ~~~le~~lA~l~g~~~----al~~~SG~~Ai~~al~al-l~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 136 (427)
T PRK05994 65 NAVLEERVAALEGGTA----ALAVASGHAAQFLVFHTL-LQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD--- 136 (427)
T ss_pred HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHH-hCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC---
Confidence 3567889999999852 678899999999998887 68999988764322233344555567789999988643
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcE
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DF 357 (872)
+.++++++|. ++|++|.+.+.+|.+|.+.|++ +++.|+++|+.+++|.+++.|.. .+.-++++|+
T Consensus 137 ---d~~~l~~ai~--------~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~---~~pl~~gaDi 202 (427)
T PRK05994 137 ---DPASFERAIT--------PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL---IRPIEHGADI 202 (427)
T ss_pred ---CHHHHHHhcC--------cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc---CCccccCCcE
Confidence 5677877774 2589999999999999999997 55678999999999999988863 2223579999
Q ss_pred EEEcccccCCCCCCc-eEEEEEeC
Q 002866 358 IITSFYRVFGFDPTG-FGCLLIKK 380 (872)
Q Consensus 358 lv~S~HK~fG~~PtG-vG~LyVRk 380 (872)
++.|+||++|+ |.| +|++++..
T Consensus 203 vv~S~tK~lgg-~~~~~gG~v~~~ 225 (427)
T PRK05994 203 VVHSLTKFLGG-HGNSMGGIIVDG 225 (427)
T ss_pred EEEcCccccCC-CCCcEEEEEEeC
Confidence 99999999996 554 78888754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=148.46 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=124.7
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGae 268 (872)
++||. .+...++||++.|+.. .+++++++.|+.+++.++ .++|++||+.. ..|..+. .+...+++.|++
T Consensus 66 ~~~p~----~~~Le~~lA~l~g~~~----av~~sSG~aAi~~al~al-l~~Gd~Vv~~~-~~y~~t~~~~~~~l~~~Gi~ 135 (436)
T PRK07812 66 IMNPT----QDVVEQRIAALEGGVA----ALLLASGQAAETFAILNL-AGAGDHIVSSP-RLYGGTYNLFHYTLPKLGIE 135 (436)
T ss_pred CCCch----HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHH-hCCCCEEEEeC-CcchHHHHHHHHHhhcCeEE
Confidence 34665 3477889999999852 577778899999888777 57899988663 3444443 333445668999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++ +. .+.++++++|. ++|++|.+.+.+|++|.+.|++ +.+.||++|+.++||++|+.|. ..
T Consensus 136 v~~vd-d~----~d~e~l~~ai~--------~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~--~~ 200 (436)
T PRK07812 136 VSFVE-DP----DDLDAWRAAVR--------PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPY--LI 200 (436)
T ss_pred EEEEC-CC----CCHHHHHHhCC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc--cC
Confidence 88875 21 26777777664 3689999999999999999998 5567899999999999998875 22
Q ss_pred CCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSV 382 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~ 382 (872)
+.-++++|+++.|+||++|+ + ..+|.+++....
T Consensus 201 -~pl~~GaDivv~S~tK~lgg-~G~~i~G~vv~~~~ 234 (436)
T PRK07812 201 -RPLEHGADIVVHSATKYLGG-HGTAIAGVIVDGGT 234 (436)
T ss_pred -CchhcCCCEEEEecccccCC-CCCeEEEEEEcCCc
Confidence 22357999999999999995 3 228888875543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=143.40 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=146.7
Q ss_pred cccCCCCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCC
Q 002866 143 EYLHLSPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPEN 215 (872)
Q Consensus 143 EFP~L~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~d 215 (872)
.++.-.+.++||.+..+ ++|+.+++++.+ .+... ...|+.+ .-..+.|+.||++++ ++++
T Consensus 27 ~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~-------~~~~~---~~~Y~~~---~g~~~lr~~ia~~~~~~~g~~~~~~ 93 (387)
T PRK08960 27 LEAAGHDVIHLEIGEPDFTTAEPIVAAGQA-------ALAAG---HTRYTAA---RGLPALREAIAGFYAQRYGVDVDPE 93 (387)
T ss_pred HHhcCCCeEEeCCCCCCCCCCHHHHHHHHH-------HHhcC---CCccCCC---CCCHHHHHHHHHHHHHHhCCCCChh
Confidence 35555568999999998 467778776432 12211 1124322 124578999999874 6665
Q ss_pred CCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhh
Q 002866 216 EYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKK 294 (872)
Q Consensus 216 EY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~ 294 (872)
+|++|+|+++|+++++..+ +.+||+|++. +..+..... .++..|+++..+|++.. +..++.+++++++..
T Consensus 94 --~i~it~G~~~al~~~~~~~-~~~gd~vlv~-~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-- 164 (387)
T PRK08960 94 --RILVTPGGSGALLLASSLL-VDPGKHWLLA-DPGYPCNRH---FLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA-- 164 (387)
T ss_pred --hEEEccCcHHHHHHHHHHh-cCCCCEEEEc-CCCCcchHH---HHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc--
Confidence 5999999999999999888 6889998865 323343333 33456899999998753 235788888887753
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCCCCccCCCCCCCC-cEEEEcccccCCC
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPKDMDSLGLSLFRP-DFIITSFYRVFGF 368 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~l~~-DFlv~S~HK~fG~ 368 (872)
+++++.++..+|.||..+|.+. ++.|+++|+++++|.+-. .-.+.....+-.... -+++.|+.|.||.
T Consensus 165 ------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~ 238 (387)
T PRK08960 165 ------DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGM 238 (387)
T ss_pred ------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCC
Confidence 4788899999999999999863 345789999999999721 110000111112222 3788999999984
Q ss_pred CCCc--eEEEEEeCCCccccc
Q 002866 369 DPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 369 ~PtG--vG~LyVRk~~i~~L~ 387 (872)
.| +|.++..++.++.+.
T Consensus 239 --~GlRiG~~~~~~~~~~~~~ 257 (387)
T PRK08960 239 --TGWRLGWLVAPPAAVPELE 257 (387)
T ss_pred --cccEEEEEEcCHHHHHHHH
Confidence 47 999998877665543
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=143.75 Aligned_cols=199 Identities=10% Similarity=-0.014 Sum_probs=138.3
Q ss_pred cccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 143 EYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 143 EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
.|+.....||++++...+.+..+.+.... ...... ...|+||. ..+.++++|+++|+++. ++ +
T Consensus 24 ~~~~~~~pi~~~~~~~~~~~~~~~~~~~~-------~~~~~~--y~r~~~p~----~~~Le~~lA~l~G~~~~---~~-~ 86 (398)
T PRK07504 24 QFGETSEALFLTQGFVYDTAEAAEARFKG-------EDPGFI--YSRYSNPT----VDMFEKRMCALEGAEDA---RA-T 86 (398)
T ss_pred CCCCCcCCeECCCCccCCCHHHHHHHhcc-------CcCCce--eecCCCch----HHHHHHHHHHHhCCCee---eE-e
Confidence 46666668999999888776554432110 000000 12356665 46788999999999643 54 6
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
++++.|+..+...+ +++||+|++... .+.+.. .+...+++.|++++.++ .++.++++++|. ++
T Consensus 87 ~sG~~Ai~~~l~~~-l~~Gd~Vl~~~~-~y~~~~~~~~~~~~~~G~~v~~vd------~~d~e~l~~ai~--------~~ 150 (398)
T PRK07504 87 ASGMAAVTAAILCQ-VKAGDHVVAARA-LFGSCRYVVETLLPRYGIESTLVD------GLDLDNWEKAVR--------PN 150 (398)
T ss_pred cCHHHHHHHHHHHH-hCCCCEEEEcCC-chhHHHHHHHHHHhhcCeEEEEEC------CCCHHHHHHhcC--------cC
Confidence 78888887666543 578999887632 233333 33445667899998874 257788887774 35
Q ss_pred ceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCC-ceEEEEE
Q 002866 302 AGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPT-GFGCLLI 378 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~Pt-GvG~LyV 378 (872)
|++|.+.+.+|.||.++|++. .+.|+++|+.+++|++++.+.. . ..-.+++|+++.|+||+||+ |. .+|..++
T Consensus 151 tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~--~-~~~~~gaDivv~S~sK~l~g-~g~~~GG~vv 225 (398)
T PRK07504 151 TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLF--Q-KPLELGAHIVVYSATKHIDG-QGRCLGGVVL 225 (398)
T ss_pred ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccccc--C-CchhhCCCEEEeeccccccC-CccceEEEEE
Confidence 899999999999999999984 5678999999999999876642 1 22245899999999999986 32 3654444
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=145.79 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd~ 276 (872)
.+++.++++|+++|++ .+++|+|+++|+.+++.++ +++||+||+... .|.+... +...++..|++++.++++
T Consensus 62 ~~~~le~~la~l~g~~----~~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~-~y~~t~~~~~~~~~~~G~~v~~vd~~- 134 (390)
T PRK08133 62 TVTMFQERLAALEGAE----ACVATASGMAAILAVVMAL-LQAGDHVVSSRS-LFGSTVSLFEKIFARFGIETTFVDLT- 134 (390)
T ss_pred HHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccC-cchhHHHHHHHHHHHcCcEEEEECCC-
Confidence 4678999999999984 2788999999999988877 678999887633 3444433 445667789999988753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++++++|. ++|++|.+...+|.+|.+.|++ +++.||++|+++++|.++..+....++ ..++
T Consensus 135 -----d~~~l~~~i~--------~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl---~~g~ 198 (390)
T PRK08133 135 -----DLDAWRAAVR--------PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL---KLGA 198 (390)
T ss_pred -----CHHHHHHhcC--------cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCC
Confidence 5677877774 3589999999999999999997 557889999999999997666411232 4578
Q ss_pred cEEEEcccccCCCCCCc--e-EEEEEeCC
Q 002866 356 DFIITSFYRVFGFDPTG--F-GCLLIKKS 381 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG--v-G~LyVRk~ 381 (872)
|+++.|++|++|+ .| + |+++.+++
T Consensus 199 Divv~S~sK~~~g--~g~~~GG~vv~~~~ 225 (390)
T PRK08133 199 DVVIHSATKYLDG--QGRVLGGAVVGSKE 225 (390)
T ss_pred cEEEeecceeecC--CcceEeEEEEcCHH
Confidence 9999999999984 34 5 44444433
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=143.80 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
...+..++||+++|++ .++||+++++|+.+++.++. .+|+.+++. ..+|.++.. .++..|+++.. ++.
T Consensus 100 ~~~~le~~la~~~g~~----~~~~~~sG~~An~~~l~~l~-~~g~~v~~~-~~~h~s~~~---~~~~~g~~~~~--~~~- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTGFE----SCLLCQSGWAANVGLLQTIA-DPNTPVYID-FFAHMSLWE---GVRAAGAQAHP--FRH- 167 (407)
T ss_pred HHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHhC-CCCCEEEEE-CCcCHHHHH---HHHHCCCeEEE--ecC-
Confidence 4566778999999984 27889999999999998874 578887765 456777743 23446777653 322
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCC-------CccCC
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKD-------MDSLG 349 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~-------mipLD 349 (872)
.+.++|+++|... .+++|++.+++|+||.++|++. .+.|+++|+++++|.+|..|.. ...++
T Consensus 168 ---~d~~~l~~~l~~~-------~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~ 237 (407)
T PRK07179 168 ---NDVDHLRRQIERH-------GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELG 237 (407)
T ss_pred ---CCHHHHHHHHHhc-------CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcC
Confidence 4789999888531 3689999999999999999974 5678999999999999986531 00233
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+. .++|++++|+||+||+ ++|+++++++.++.+
T Consensus 238 ~~-~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~ 270 (407)
T PRK07179 238 LT-SRVHFITASLAKAFAG---RAGIITCPRELAEYV 270 (407)
T ss_pred CC-CCCCEEEeechHhhhc---cCeEEEeCHHHHHHH
Confidence 32 2579999999999985 489999887765544
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=142.76 Aligned_cols=210 Identities=13% Similarity=0.138 Sum_probs=142.7
Q ss_pred CCceecccCCCCCC-cHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 148 SPKVCLDYCGFGLF-SYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 148 ~~~IYLDyAAtgp~-p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
...|.|+.+-..+. ++.+++++.+ .+... ....|+.+. -..+.|+.||+++|++++ +|++|+|+|
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~-------~~~~~--~~~~y~~~~---g~~~lr~~ia~~l~~~~~--~v~~~~g~t 93 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIR-------CIEEG--EYCKYPPPE---GFPELRELILKDLGLDDD--EALITAGAT 93 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHH-------HHhcC--CCCCCCCCc---chHHHHHHHHHhcCCCCC--cEEEeCCHH
Confidence 35789997766554 4555554322 11110 011243332 356899999999999876 599999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC--CCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP--TLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p--~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
+|+.+++.++ ..+|+.|++.. ..+ ......++..|++++.++++.. +..++.+++++.+.. ++++
T Consensus 94 ~al~~~~~~~-~~~gd~vl~~~-p~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~--------~~~~ 160 (380)
T PRK06225 94 ESLYLVMRAF-LSPGDNAVTPD-PGY---LIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE--------NTRL 160 (380)
T ss_pred HHHHHHHHHh-cCCCCEEEEcC-CCC---cchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC--------CceE
Confidence 9999999887 46788877652 122 2233456778999999987421 346888988887742 4789
Q ss_pred EEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc---CCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEE
Q 002866 305 FVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL---GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGC 375 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~---aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~ 375 (872)
+.+.+.+|.||..+|.+ +++.|+++|+++++|.++. .+.. ....+. ....+++.|+.|+|| +.| +|+
T Consensus 161 v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~-~~~~i~~~s~SK~~g--~~G~RiG~ 236 (380)
T PRK06225 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHT-LAAEYA-PEHTVTSYSFSKIFG--MAGLRIGA 236 (380)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCC-chhhcC-CCCEEEEeechhhcC--CccceeEE
Confidence 88888999999999853 3466799999999999852 2220 111111 133567779999998 447 699
Q ss_pred EEEeCCCcccccC
Q 002866 376 LLIKKSVMGSLQN 388 (872)
Q Consensus 376 LyVRk~~i~~L~P 388 (872)
+++++..++.+.+
T Consensus 237 i~~~~~l~~~~~~ 249 (380)
T PRK06225 237 VVATPDLIEVVKS 249 (380)
T ss_pred EecCHHHHHHHHH
Confidence 9998877766543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=142.41 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=121.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||. +.+.+++||+++|++ .++.|+++++|+.+++.++ +++||+|++... .|.+...+.+.++..|++
T Consensus 49 r~~np~----~~~lE~~lA~l~g~~----~~l~~~sG~~Ai~~~l~~l-l~~GD~Vlv~~~-~y~~~~~~~~~~~~~g~~ 118 (385)
T PRK08574 49 REENPT----LRPLEEALAKLEGGV----DALAFNSGMAAISTLFFSL-LKAGDRVVLPME-AYGTTLRLLKSLEKFGVK 118 (385)
T ss_pred CCCCcc----HHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEcCC-CchhHHHHHHHhhccCcE
Confidence 356665 457899999999974 2566788899999988877 688999887643 344554444444667988
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..+. .+.++++++|.. .+|++|.+...+|.||.++|++ +++.||++|+++++|.+++.|....+
T Consensus 119 v~~~~-------~d~~~l~~~i~~-------~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~ 184 (385)
T PRK08574 119 VVLAY-------PSTEDIIEAIKE-------GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRP 184 (385)
T ss_pred EEEEC-------CCHHHHHHhcCc-------cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCh
Confidence 87653 246778777742 1589999999999999999998 55788999999999999987742112
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc-e-EEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG-F-GCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG-v-G~LyVR 379 (872)
+ ..++|++++|++|++++ |.+ + |+++.+
T Consensus 185 l---~~GaDivv~S~sK~l~g-~~d~~gG~vi~~ 214 (385)
T PRK08574 185 L---RHGADFVVHSLTKYIAG-HNDVVGGVAVAW 214 (385)
T ss_pred h---hhCCcEEEeeCceeecC-CCCceeEEEEEC
Confidence 2 46899999999999987 654 3 435543
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=140.75 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=122.5
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGa 267 (872)
.|+||.. +..++++|++.|+ + .+++|+|+++|+.+++.++ +++||+|++... .+.+ ...+...+...|+
T Consensus 47 R~~~p~~----~~le~~lA~l~g~--~--~v~~~~gg~~Ai~~~l~al-l~~GD~Vl~~~p-~y~~~~~~~~~~~~~~~~ 116 (382)
T TIGR02080 47 RSGNPTR----DLLQQALAELEGG--A--GAVVTNTGMSAIHLVTTAL-LGPDDLLVAPHD-CYGGTYRLLNALAKKGCF 116 (382)
T ss_pred CCCCchH----HHHHHHHHHHhCC--C--cEEEEcCHHHHHHHHHHHH-cCCCCEEEEcCC-CcHHHHHHHHHHHhhcCe
Confidence 5678763 5788899999995 2 3899999999999999988 689999886643 2333 3333444566678
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..++. .+.++++++|.. +|++|.+...+|.||.++|++ +++.||++|+++++|.+++.+....
T Consensus 117 ~v~~~d~------~d~~~l~~ai~~--------~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~ 182 (382)
T TIGR02080 117 RVLFVDQ------GDEQALRAALAQ--------KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN 182 (382)
T ss_pred EEEEECC------CCHHHHHHhcCc--------CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 8877642 256778777742 589999999999999999998 4567899999999999987764212
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIK 379 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVR 379 (872)
++ .+++|+++.|++|++++ +.| .|++.++
T Consensus 183 pl---~~gaDivv~S~sK~l~G-~~~~~~G~i~~~ 213 (382)
T TIGR02080 183 PL---ALGADLVLHSCTKYLNG-HSDVIAGAVIAK 213 (382)
T ss_pred ch---hhCCCEEEeecceeccC-CCCceeEEEEeC
Confidence 33 35789999999999987 556 5555544
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=140.98 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=122.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGa 267 (872)
.|+||. .+..+++||++.|.. .+++|+|+++|+.+++.++ +++||+|++... .+.. ...+...+...|+
T Consensus 48 R~~~pt----~~~L~~~lA~l~g~~----~~i~~~sg~~Ai~~~l~~l-~~~GD~Vl~~~~-~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 48 RRGNPT----RDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHD-CYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred CCCCcc----HHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCC-CcHHHHHHHHHHHhhCCe
Confidence 467775 357899999999962 3999999999999999876 578999887643 3343 3334445555666
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..++ ..+.+++++++.. +|++|.++..+|.||.++|++. .+.|+++|+++++|.++..|....
T Consensus 118 ~v~~vd------~~d~e~l~~~l~~--------~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~ 183 (386)
T PRK08045 118 RVLFVD------QGDEQALRAALAE--------KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQN 183 (386)
T ss_pred EEEEeC------CCCHHHHHHhccc--------CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 777653 1467788777642 5899999999999999999984 567899999999999988775212
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyV 378 (872)
++ .+++|+++.|+|||+++ |.+ .|++++
T Consensus 184 pl---~~gaDivv~S~tK~l~G-~~d~~~G~vi~ 213 (386)
T PRK08045 184 PL---ALGADLVLHSCTKYLNG-HSDVVAGVVIA 213 (386)
T ss_pred ch---hhCCCEEEeecceeccC-CCCceeEEEEe
Confidence 33 45899999999999987 665 455544
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-12 Score=139.89 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.+.+.++++|+++|++ .+++|+|+|+|+.+++.++.+++||+||+.. ..|.+... .+...|++++.++++..
T Consensus 34 ~~~~le~~la~~~g~~----~~v~~~sgt~al~lal~al~~~~Gd~Viv~~-~~~~~~~~---~~~~~G~~~v~vd~~~~ 105 (379)
T PRK11658 34 KNQALEQAFCQLTGNQ----HAIAVSSATAGMHITLMALGIGPGDEVITPS-LTWVSTLN---MIVLLGATPVMVDVDRD 105 (379)
T ss_pred hHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEECC-CcHHHHHH---HHHHcCCEEEEEecCCC
Confidence 4678999999999984 2788999999999999998778999988763 34444432 34557999999999865
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
+..++.++++++|.. +|++|... |.+|...|++ +++.|+++|+.+++|+||+.|......++..+++|
T Consensus 106 ~~~~d~~~l~~~i~~--------~tkav~~~---~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~ 174 (379)
T PRK11658 106 TLMVTPEAIEAAITP--------RTKAIIPV---HYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTA 174 (379)
T ss_pred cCCcCHHHHHHhccc--------CCeEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCE
Confidence 667899999988853 47777644 4599999997 55778999999999999998752111236667888
Q ss_pred EEEEcccccCCCCCCceEEEEEeC--CCccccc
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKK--SVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk--~~i~~L~ 387 (872)
+++++.+|.+.. |-|.+++.+ +..+.++
T Consensus 175 ~~Sf~~~K~l~~---g~GG~v~~~~~~~~~~~~ 204 (379)
T PRK11658 175 IFSFHAIKNITC---AEGGLVVTDDDELADRLR 204 (379)
T ss_pred EEeCCCCCcCcc---cCceEEEECCHHHHHHHH
Confidence 888888897654 555555543 4444444
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=151.83 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH-----HHHHHHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcC
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS-----AFKLLAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATe-----ALnLVaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkG 266 (872)
.+.+.+..+-+++++|.+ .+.|++|+|. ++ +++..|.+++|+ .++++ +..|.++.. .+...|
T Consensus 541 l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL-~a~r~~~~~~G~~~r~~vlis-~~aH~snp~---sa~~~G 611 (954)
T PRK05367 541 RELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRDVCLIP-SSAHGTNPA---SAVMAG 611 (954)
T ss_pred HHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHH-HHHHHHhhccCCCCCCEEEEE-chhhhhhHH---HHHHCC
Confidence 368888999999999986 3888898883 44 577778777776 25554 445666643 245679
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCC
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDM 345 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~m 345 (872)
++|++++++. ++.++.++|+++|... ..++..|++++-++..+...|++ ++..+|++|++|+||+||..+.
T Consensus 612 ~~vv~v~~d~-~G~iD~~~L~~~i~~~-----~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al-- 683 (954)
T PRK05367 612 MKVVVVACDE-NGNIDLDDLRAKAEEH-----ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQ-- 683 (954)
T ss_pred CEEEEECCCC-CCCcCHHHHHHHHhcc-----CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhc--
Confidence 9999999985 5899999999988642 12455666666555533458997 5567899999999999998654
Q ss_pred ccCC-CCCCCCcEEEEcccccCCCCCC-----ceEEEEEeCCCc
Q 002866 346 DSLG-LSLFRPDFIITSFYRVFGFDPT-----GFGCLLIKKSVM 383 (872)
Q Consensus 346 ipLD-Ls~l~~DFlv~S~HK~fG~~Pt-----GvG~LyVRk~~i 383 (872)
+.+. ..++++|++++|+|||||. |. |+|+|+||+...
T Consensus 684 ~~l~~pg~~GADi~~~s~HK~f~~-P~G~GGPg~G~l~vr~~l~ 726 (954)
T PRK05367 684 VGLARPGDIGADVSHLNLHKTFCI-PHGGGGPGVGPIGVKAHLA 726 (954)
T ss_pred cCCCChhhcCCCEEEecCcccCCC-CcCCCCCceEEEeeccccc
Confidence 2333 2368999999999999865 44 477999986543
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=133.71 Aligned_cols=171 Identities=15% Similarity=0.217 Sum_probs=121.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC-HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS-RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsn-ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
+...+++.++++.+.++|+++ ++|.|+|.+| +|.++..+..++- .+|++++.....-+=+ ..|.+.|++.| +|..
T Consensus 45 ~~F~~i~~~~~~~Lr~Ll~~P-~~y~Vlfl~GggT~~~ea~~~Nll-~~g~~~~~~~~tG~fg-~r~~~ea~~~g-~v~~ 120 (364)
T PRK12462 45 SWFSSLLAQAEADLRDLLGIP-DEYGVVFLQGGSSLQFSMIPMNFS-RPGAAAPEYVTTGYWS-RKAIGEASRVA-AMRV 120 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCeEEEEeccHHHHHHHHHHHcC-CCCCcEEEEEeCCHHH-HHHHHHHHhcC-CceE
Confidence 334578999999999999995 4588888765 9999999888873 5677543111111111 24567788877 5665
Q ss_pred EeccCC---CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccC
Q 002866 272 AWFKWP---TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 272 Vpvd~p---~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
+...+. ...++.+++ . ..++...|.++|..-.||+.+| ...+.+++.+++|+++.++. .|+
T Consensus 121 ~~~~~~~~~~~~p~~~~~----~------~~~d~~~v~~t~NETstGv~~~----~~~~~~~~llvvD~sS~~~s--~pi 184 (364)
T PRK12462 121 VWDGAASGYRTLPSLAEL----D------WDARAPFRHYVSNETVEGLQFP----DAAGLPDSPLIADMSSDFMS--RPF 184 (364)
T ss_pred ecCcCCCCCCcCCCHHHh----c------cCCCCcEEEEccCCCCceEecC----cccccCCCeEEEEcCchhhC--CCC
Confidence 543221 112233332 1 1234678999999999999997 22233689999999988876 599
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|++++ |.+.++.+|-+| |.|+++++|+++.++..+
T Consensus 185 d~~~~--dvi~agsQKnlg--P~Gltvvivs~~al~~~~ 219 (364)
T PRK12462 185 DVEAY--GMVYAHAQKNLG--PAGVTVAIIRRALLERVP 219 (364)
T ss_pred ChHHc--cEEEeeccccCC--CCceEEEEECHHHHhhcc
Confidence 99987 999999999999 679999999999876543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=142.28 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=127.5
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGa 267 (872)
.|+||. .++.+++||+++|+.. .++|+|+++|+.+++.++ +++|++|++... .|.. ...+...+...|+
T Consensus 55 r~~~p~----~~~le~~lA~l~g~~~----av~~~sG~~Ai~~~l~al-~~~Gd~Vi~~~~-~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 55 RLGNPT----VSNLEGRIAFLEGTEA----AVATSSGMGAIAATLLTI-LKAGDHLISDEC-LYGCTFALLEHALTKFGI 124 (391)
T ss_pred CCCCch----HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEecC-cchHHHHHHHHHHhcCCe
Confidence 456765 4578889999999853 567888889999888777 678999887643 2332 3334455677899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++.+++++ +.++++++|. ++|++|.+...+|.+|.+.|++ +++.|+++|+.+++|.+++.+. .
T Consensus 125 ~~~~vd~~------d~e~l~~~i~--------~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~--~ 188 (391)
T TIGR01328 125 QVDFINMA------IPEEVKAHIK--------DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM--L 188 (391)
T ss_pred EEEEECCC------CHHHHHHhhc--------cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc--c
Confidence 99988753 5677877774 2589999999999999999997 5567899999999999987664 1
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.-.+ ..++|++++|++|+||+ |.+ .|+++.+++.++.++
T Consensus 189 ~~~~-~~g~Divv~S~sK~lgg-~g~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 189 TNPV-ALGVDVVVHSATKYIGG-HGDVVAGLICGKAELLQQIR 229 (391)
T ss_pred CCch-hcCCCEEEccccccccC-CCCceEEEEEcCHHHHHHHH
Confidence 2222 35899999999999996 543 466766666554443
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=142.40 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=127.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.|+||. ..+.+++||+++|++ .+++++++++|+.+++.++ +++||+||+...........+...+++.|++
T Consensus 50 r~~~p~----~~~le~~la~l~g~~----~~~~~~sG~~Ai~~al~al-~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~ 120 (380)
T TIGR01325 50 RYANPT----VAAFEERIAALEGAE----RAVATATGMSAIQAALMTL-LQAGDHVVASRSLFGSTVGFISEILPRFGIE 120 (380)
T ss_pred cCCCch----HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEecCCcchHHHHHHHHHHHhCCE
Confidence 355654 467889999999983 2778999999999988777 5789998875432112333445567778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++.+ +.+++++++. +++++|.+...+|.+|.+.|++. .+.|+++|+++++|.++..+....+
T Consensus 121 v~~v~~~------d~~~l~~~i~--------~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p 186 (380)
T TIGR01325 121 VSFVDPT------DLNAWEAAVK--------PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP 186 (380)
T ss_pred EEEECCC------CHHHHHHhcC--------CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 9888653 4677776664 25899999999999999999985 5678999999999999865431123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCC-ce-EEEEEeCCCccccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPT-GF-GCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~Pt-Gv-G~LyVRk~~i~~L~ 387 (872)
+ .+++|+++.|++|++|+ +. .+ |+++.+++.++.+.
T Consensus 187 l---~~g~Divv~S~sK~l~g-~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 187 L---KLGADVVVYSATKHIDG-QGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred h---hhCCCEEEeeccceecC-CCCeEEEEEEeCHHHHHHHH
Confidence 3 45899999999999986 42 24 66666666655554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=144.43 Aligned_cols=171 Identities=12% Similarity=0.019 Sum_probs=127.5
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-cCchhHHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFD-YESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~D-hEHnSVl~~~~~AkrkGa 267 (872)
.|+||. +++.++++|+++|++ .+++|+|+|+|+.+++.++ +++||+||+... |. .....+...++..|+
T Consensus 61 r~~~pt----~~~Le~~lA~l~g~~----~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~-~~~~~~~~~~~~~Gi 130 (394)
T PRK07050 61 LHATPT----SLALAQRLAEIEGGR----HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYG-PNRDHGEWLARDFGI 130 (394)
T ss_pred CCCCHH----HHHHHHHHHHHhCCC----eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCcc-cHHHHHHHHHHhcCe
Confidence 456664 467888999999973 3999999999999999988 689999887643 32 223233345677899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..++.. +.++++++|. ++|++|.+...+|.+|.+.+++. .+.|+++|+.+++|+++..|.
T Consensus 131 ~v~~vd~~------~~~~l~~~i~--------~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~--- 193 (394)
T PRK07050 131 TVRFYDPL------IGAGIADLIQ--------PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGL--- 193 (394)
T ss_pred EEEEECCC------CHHHHHHhcC--------CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccc---
Confidence 99887542 3456766664 36899999999999999999985 567899999999999998875
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC-CCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk-~~i~~L~ 387 (872)
.++--.+++|+++.|+.|++++ ..+ .|+++.+. ++.+.++
T Consensus 194 ~~~~l~~GaDi~v~S~tK~~~g-~~~~~gG~v~~~~~~~~~~~~ 236 (394)
T PRK07050 194 AFKPFEHGVDISVQALTKYQSG-GSDVLMGATITADAELHAKLK 236 (394)
T ss_pred ccCHHHcCCeEEEEECCceecC-CCCeeEEEEEECCHHHHHHHH
Confidence 2333345899999999999886 344 56666644 4445443
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=141.44 Aligned_cols=165 Identities=11% Similarity=0.044 Sum_probs=125.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||. .++.+++||++.|+. ..++|+++++|+..++.++ +++|++||+.....+.....+...++..|++
T Consensus 53 r~~~p~----~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~~l-~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 123 (418)
T TIGR01326 53 RLMNPT----TDVLEQRIAALEGGV----AALAVASGQAAITYAILNL-AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123 (418)
T ss_pred CCCChh----HHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence 345554 467899999999973 3789999999999888776 5789998776321123334455667788999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++.++.+ +.++++++|.. ++++|.+...+|.+|.+.|++. ++.|+++|+.+++|.+++.|.. .
T Consensus 124 v~~v~~~------d~~~l~~~l~~--------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~--~ 187 (418)
T TIGR01326 124 VRFVDPD------DPEEFEKAIDE--------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL--C 187 (418)
T ss_pred EEEECCC------CHHHHHHhcCc--------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc--C
Confidence 9988742 57788877742 5889999999999999999985 5678999999999999887642 1
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
..+ ..++|+++.|++|+||+ .| +|.+++.+.
T Consensus 188 ~~l-~~g~Divv~S~sK~l~g--~G~~lGg~v~~~~ 220 (418)
T TIGR01326 188 RPI-DHGADIVVHSATKYIGG--HGTAIGGVIVDGG 220 (418)
T ss_pred Cch-hcCCeEEEECccccccC--CccceEEEEEecc
Confidence 122 45899999999999985 35 788887654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=140.86 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=120.5
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||. .+..+++||++.|+. + . ++|+|+++|+.+++.++ +++||+|++....-......+...+++.|++
T Consensus 56 R~~~p~----~~~Le~~lA~l~g~~-~--~-v~~~sG~~Ai~~~l~al-l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 56 RSGNPT----RDLLGEALAELEGGA-G--G-VITATGMGAINLVLNAL-LQPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred CCCChH----HHHHHHHHHHHhCCC-c--e-EEEcCHHHHHHHHHHHH-hCCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 345554 356889999999973 2 3 45666689999999988 6899998875431122222344556677888
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++. .+.++|++++. ++|++|.++..+|.||.+.+++ +++.|+++|+.+++|.+++.|....+
T Consensus 127 v~~v~~------~d~~~l~~~i~--------~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p 192 (405)
T PRK08776 127 LITADL------TDPRSLADALA--------QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP 192 (405)
T ss_pred EEEECC------CCHHHHHHhcC--------cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 887653 25677877664 2589999999999999999997 45678999999999999887742123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKK 380 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk 380 (872)
+ .+++|++++|+||+|++ |.+ .|+++++.
T Consensus 193 l---~~gaDivv~S~tK~l~g-~~~~~~G~vv~~~ 223 (405)
T PRK08776 193 L---EFGADLVLHSTTKYING-HSDVVGGAVVARD 223 (405)
T ss_pred c---cccCCEEEecCceeecC-CCCceEEEEEeCC
Confidence 3 36899999999999987 655 45555543
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=143.00 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
..++.|++||+++|+.+ .++|++| ++|+.+++.++ +++||+||+....-..+...+...++..|+++..++.+.
T Consensus 46 ~~~~L~~~lA~l~g~~~---~v~~~sG-~~ai~~~l~al-~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~- 119 (376)
T PRK06460 46 TVLELTKKIVELENAEM---GVAFSSG-MGAISTTALAL-LKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS- 119 (376)
T ss_pred cHHHHHHHHHHHhCCCc---EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC-
Confidence 35689999999999953 4887665 68999988887 678999887532111334445566788899998876532
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
.+.+++++ .++|++|.++..+|.||.++|++. ++.|+++|+.+++|.+++.+....+ + ..++|
T Consensus 120 -----~~~l~~~~--------~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~--l-~~~~d 183 (376)
T PRK06460 120 -----DNIIEKAK--------SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKP--L-ELGAD 183 (376)
T ss_pred -----HHHHHHhc--------CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCCh--h-hcCCC
Confidence 22233322 236899999999999999999985 5678999999999999876642112 2 35789
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++.|++|+|++ +.| .|+++.++++++.+.
T Consensus 184 ivv~S~sK~l~G-~~~~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 184 IVVHSASKFLAG-HNDVIAGLAAGYGKLLNVID 215 (376)
T ss_pred EEEeecceeccC-CCCceEEEEecCHHHHHHHH
Confidence 999999999986 543 777777776655553
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=140.44 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=124.3
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGa 267 (872)
.|+||. ..+.+++||+++|+. + .++++|++.|+.++..++ +++|++|++... .|... ..+...+++.|+
T Consensus 57 r~~~pt----~~~Le~~lA~l~G~~-~---al~~~sG~~Ai~~~l~al-~~~Gd~Vv~~~~-~y~~~~~~~~~~~~~~gi 126 (386)
T PRK06767 57 RLGNPT----VKLFEERMAVLEGGE-E---ALAFGSGMAAISATLIGF-LKAGDHIICSNG-LYGCTYGFLEVLEEKFMI 126 (386)
T ss_pred CCCCcc----hHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHH-hCCCCEEEEcCC-cHHHHHHHHHHHHhhcCe
Confidence 356665 457889999999974 2 455667778999888877 688999887643 23333 333444566788
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..++. .+.+++++++.. +|+||.+...+|.||.+.|++ +...|+++|+.+++|.+++.+. .
T Consensus 127 ~~~~~~~------~d~~~l~~~i~~--------~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~--~ 190 (386)
T PRK06767 127 THSFCDM------ETEADIENKIRP--------NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPY--L 190 (386)
T ss_pred EEEEeCC------CCHHHHHHhhCc--------CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccc--c
Confidence 8776543 256778777742 589999999999999999997 4567899999999999987664 2
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGS 385 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~ 385 (872)
..++ ..++|+++.|++|++++ +.+ .|+++.+++.+..
T Consensus 191 ~~pl-~~g~Div~~S~sK~l~g-~g~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 191 QRPL-ELGCDAVVHSATKYIGG-HGDVVAGVTICKTRALAE 229 (386)
T ss_pred CCch-hcCCcEEEecCcceecC-CCCceeEEEEeChHHHHH
Confidence 2333 35899999999999986 544 5888877765543
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=142.00 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p 277 (872)
..+.|++||++.|++. .++|+ ++++|+.++..++ +++||+||+... .+.+. ..+...+++.|+++..++.
T Consensus 63 ~~~Le~~lA~~~g~~~---~i~~~-sG~~Ai~~~l~al-l~~Gd~Vl~~~~-~y~~t~~~~~~~~~~~gi~~~~~d~--- 133 (388)
T PRK07811 63 RTALEEQLAALEGGAY---GRAFS-SGMAATDCLLRAV-LRPGDHIVIPND-AYGGTFRLIDKVFTRWGVEYTPVDL--- 133 (388)
T ss_pred HHHHHHHHHHHhCCCc---eEEeC-CHHHHHHHHHHHH-hCCCCEEEEcCC-CchHHHHHHHHhCcCCCeEEEEeCC---
Confidence 5689999999999864 46665 5689999999988 689999887643 23332 3333445556888887653
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
.+.++++++|.. +|++|.+...+|.||.+.|++ ++..|+++|+.+++|.+++.+....++ .+++|
T Consensus 134 ---~d~e~l~~~i~~--------~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~---~~gaD 199 (388)
T PRK07811 134 ---SDLDAVRAAITP--------RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL---ALGAD 199 (388)
T ss_pred ---CCHHHHHHhcCc--------CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch---hhCCc
Confidence 367888877742 589999999999999999998 456789999999999998777421233 35899
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
++++|++|++|+ |.+ .|++++++.
T Consensus 200 ivv~S~sK~l~g-~~~~~gG~vv~~~~ 225 (388)
T PRK07811 200 VVVHSTTKYIGG-HSDVVGGALVTNDE 225 (388)
T ss_pred EEEecCceeecC-CCCcEEEEEEECCH
Confidence 999999999997 655 577777643
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=143.80 Aligned_cols=166 Identities=12% Similarity=0.099 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.+++||+++|+.. .+.++++++|+.++..++ +++||+|++... .+.+.. .+...+++.|+++..++.
T Consensus 65 ~~~~le~~lA~l~g~~~----~i~~ssG~~Ai~~~l~al-l~~GD~Vi~~~~-~y~~~~~~~~~~~~~~Gi~v~~vd~-- 136 (398)
T PRK08249 65 TVQAFEEKVRILEGAEA----ATAFSTGMAAISNTLYTF-LKPGDRVVSIKD-TYGGTNKIFTEFLPRMGVDVTLCET-- 136 (398)
T ss_pred HHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHh-cCCCCEEEEcCC-chHHHHHHHHHHHhhCCeEEEEcCC--
Confidence 35789999999999842 445555588999888776 578999887643 334443 344456778999887642
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
.+.++++++|.. +|++|.+...+|.||.++|++ +++.||++|+.+++|.++..+....+ + ..++
T Consensus 137 ----~d~e~l~~~i~~--------~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~--l-~~~~ 201 (398)
T PRK08249 137 ----GDHEQIEAEIAK--------GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP--L-ALGA 201 (398)
T ss_pred ----CCHHHHHHhcCC--------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc--h-hhCC
Confidence 467888877742 589999999999999999997 56778999999999999886642112 2 3689
Q ss_pred cEEEEcccccCCCCCC-ce-EEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPT-GF-GCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~Pt-Gv-G~LyVRk~~i~~L~ 387 (872)
|+++.|++|++|+ +. ++ |+++.++++++.+.
T Consensus 202 Divv~S~sK~l~g-~~~~~gG~vv~~~~l~~~l~ 234 (398)
T PRK08249 202 DLVIHSATKFLSG-HADALGGVVCGSKELMEQVY 234 (398)
T ss_pred CEEeccCceecCC-CCCceEEEEECCHHHHHHHH
Confidence 9999999999985 43 24 55555555555543
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=133.73 Aligned_cols=227 Identities=14% Similarity=0.178 Sum_probs=151.3
Q ss_pred hhCCCCCCchhHHHHHhhcccCCC-CceecccCC--CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHH
Q 002866 125 TMYPKYQSSDKIDQLRANEYLHLS-PKVCLDYCG--FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHD 201 (872)
Q Consensus 125 ~~~p~y~~t~~ID~lR~~EFP~L~-~~IYLDyAA--tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~iee 201 (872)
...+.|.....+...++ +|+.-. ..++|+-+. .+ .++.+++++.+ .+. .+ ..|..+. ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~-------~~~-~~---~~y~~~~----~~~ 73 (361)
T PRK00950 11 KEIKPYVPGKSKEEIAR-EYGIDPESIIKLGSNENPLG-PSPKAVEAIEK-------ELS-KI---HRYPEPD----APE 73 (361)
T ss_pred hcCCCCCCCCCHHHHHH-HhCCCccceEEccCCCCCCC-CCHHHHHHHHH-------HHH-hh---cCCCCCC----HHH
Confidence 34444554445666665 466443 478886553 33 34455555322 111 11 1243332 268
Q ss_pred HHHHHHHhcCCCCCCCcEEE-eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCc
Q 002866 202 IKTRIMDHLNIPENEYGLVF-TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLK 280 (872)
Q Consensus 202 ARerIA~lLgA~~dEY~VVF-TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~ 280 (872)
.|+.||+++|++++ .|++ |+|+++++++++..+ .++|+.|++..- ....+...++..|++++.++.+. ++.
T Consensus 74 lr~~ia~~~~~~~~--~i~~~~~Ga~~~i~~~~~~~-~~~gd~vlv~~p----~y~~~~~~~~~~g~~~~~~~~~~-~~~ 145 (361)
T PRK00950 74 LREALSKYTGVPVE--NIIVGGDGMDEVIDTLMRTF-IDPGDEVIIPTP----TFSYYEISAKAHGAKPVYAKREE-DFS 145 (361)
T ss_pred HHHHHHHHhCCCHH--HEEEeCCCHHHHHHHHHHHh-cCCCCEEEEcCC----ChHHHHHHHHHcCCEEEEeecCC-CCC
Confidence 99999999999876 4888 789999999998887 478998876532 12233445677899999998654 457
Q ss_pred cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccC--CCCCccCCCCCCCCcE
Q 002866 281 LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLG--PKDMDSLGLSLFRPDF 357 (872)
Q Consensus 281 Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~a--G~~mipLDLs~l~~DF 357 (872)
++.+++++.+.. +++++.+++.+|.||.++|++. .+.++++|+++++|.++.. +....++ +...+.-+
T Consensus 146 ~~~~~l~~~~~~--------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~vi 216 (361)
T PRK00950 146 LDVDSVLNAITE--------KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPL-ALEYDNLI 216 (361)
T ss_pred cCHHHHHHHhcc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHH-HHhcCCEE
Confidence 889999887742 4789999999999999999975 5567889999999999742 1110111 11222236
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++.|+.|.||. .| +|.++..++.+..+.
T Consensus 217 ~~~S~SK~~g~--~GlRiG~~~~~~~~~~~~~ 246 (361)
T PRK00950 217 IGRTFSKVFGL--AGLRIGYGFVPEWLIDYYM 246 (361)
T ss_pred EEEeehHhhcC--chhhcchhcCCHHHHHHHH
Confidence 77899999984 36 788888777665554
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=135.33 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhcCCC----CCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 198 VEHDIKTRIMDHLNIP----ENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 198 ~ieeARerIA~lLgA~----~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.+.|+.++++++.. .....++||+|+|+|+..++.++. .+|++|++... .|.++ ...++..|+++..++
T Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~~~~-~~~~~---~~~~~~~~~~~~~i~ 111 (350)
T cd00609 37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLVPDP-TYPGY---EAAARLAGAEVVPVP 111 (350)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEEcCC-CchhH---HHHHHHCCCEEEEEe
Confidence 3456777888887764 112259999999999999999884 66888876632 34444 344566889999999
Q ss_pred ccCCCCccCH--HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCCC--C
Q 002866 274 FKWPTLKLCS--TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPKD--M 345 (872)
Q Consensus 274 vd~p~g~Id~--edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~~--m 345 (872)
.++.. .++. +.++..+ ++++++|.+++.+|.||..+|++.+ +.|+++|+++++|+++..+.. .
T Consensus 112 ~~~~~-~~~~~~~~~~~~~--------~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~ 182 (350)
T cd00609 112 LDEEG-GFLLDLELLEAAK--------TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGE 182 (350)
T ss_pred ccccc-CCccCHHHHHhhc--------CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc
Confidence 87643 3333 3333222 3468999999999999999998744 467999999999999765320 0
Q ss_pred cc---CCCCCCCCcEEEEcccccCCCCCCceEEEEEeC-CCccccc
Q 002866 346 DS---LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 346 ip---LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~ 387 (872)
.. ......++|+++.|+||++|.++.++|++++++ ...+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~ 228 (350)
T cd00609 183 PPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLK 228 (350)
T ss_pred ccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHH
Confidence 11 335567789999999999983255789999988 5555543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=140.64 Aligned_cols=180 Identities=9% Similarity=0.021 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
..+.|++||+++|++. +++|+++|+++.++...+...+||+|++.. ..|.++......++..|++++.+|.+. +
T Consensus 42 ~~~l~~~la~~~~~~~----~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~-~ 115 (353)
T PLN02721 42 ALRLEEEMAKIFGKEA----ALFVPSGTMGNLISVLVHCDVRGSEVILGD-NSHIHLYENGGISTLGGVHPRTVKNNE-D 115 (353)
T ss_pred HHHHHHHHHHHhCCce----eEEecCccHHHHHHHHHHccCCCCeEEEcC-ccceehhcccchhhhcCceeEecCCCc-C
Confidence 5789999999999852 677888888876666665444899988763 234322211013566899999998764 5
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhcH---H-HHHHHHHCCcEEEeeccccCCCCC-ccCCCC-
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLGPKDM-DSLGLS- 351 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~aG~~m-ipLDLs- 351 (872)
+.++.++++++|.... +...+++++|.++.. +|.+|..+|. + +++.|+++|+++++|+++..+... ..++..
T Consensus 116 ~~~d~~~l~~~i~~~~-~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~ 194 (353)
T PLN02721 116 GTMDLDAIEAAIRPKG-DDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHR 194 (353)
T ss_pred CCcCHHHHHHHHHhcc-CCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHH
Confidence 6789999999886321 011146889999775 5678999885 3 456789999999999997644200 011221
Q ss_pred -CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 352 -LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 -~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..++|++++|+||+|++ |.| |+++.+++.++.+.
T Consensus 195 ~~~~~d~~~~s~sK~l~~-~~G-~~~~~~~~~~~~~~ 229 (353)
T PLN02721 195 LVKAADSVSVCLSKGLGA-PVG-SVIVGSKSFIRKAK 229 (353)
T ss_pred HhhhCCEEEEecccccCC-cee-eEEecCHHHHHhHH
Confidence 23789999999999997 655 34666666655543
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=140.01 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=126.4
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.|+||. .++..+++|++.|+. ..++++|++.|+..+..++ +++||+|++...........+...+++.|++
T Consensus 66 r~~~p~----~~~le~~lA~l~g~~----~al~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~ 136 (403)
T PRK07810 66 RYGNPT----VSMFEERLRLIEGAE----ACFATASGMSAVFTALGAL-LGAGDRLVAARSLFGSCFVVCNEILPRWGVE 136 (403)
T ss_pred CCCCch----HHHHHHHHHHHhCCC----cEEEECChHHHHHHHHHHH-hCCCCEEEEccCCcchHHHHHHHHHHHcCcE
Confidence 467775 457889999999975 2788899999998888776 5789998876432123334455667788999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+++++.. +.++++++|.. +|++|.+...+|.+|.+.|++ +++.||++|+.|++|.+++.|....+
T Consensus 137 v~~vd~~------d~~~l~~ai~~--------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~ 202 (403)
T PRK07810 137 TVFVDGE------DLSQWEEALSV--------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG 202 (403)
T ss_pred EEEECCC------CHHHHHHhcCc--------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh
Confidence 9988642 67888887753 589999999999999999998 55678999999999999887752123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG---FGCLLIKKSV 382 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~ 382 (872)
+ .+++|++++|++|++++ .| .|+++.+++.
T Consensus 203 ~---~~gaDivv~S~tK~l~g--~g~~~gG~v~~~~~~ 235 (403)
T PRK07810 203 L---PLGADVVVYSGTKHIDG--QGRVLGGAILGDREY 235 (403)
T ss_pred h---hcCCcEEEccCCceecC--CcCceeEEEEeChHH
Confidence 3 45899999999999985 34 4666655543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=140.26 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
...+.++++|+++|+. ..++++++++|+.+++.++ .++|++|++.....+.....+...++..|+++..++.+
T Consensus 41 ~~~~le~~la~l~g~~----~a~~~~sG~~Ai~~~l~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 113 (369)
T cd00614 41 TVDALEKKLAALEGGE----AALAFSSGMAAISTVLLAL-LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-- 113 (369)
T ss_pred hHHHHHHHHHHHHCCC----CEEEEcCHHHHHHHHHHHH-cCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC--
Confidence 3467888999999974 2667788899999999887 57899987764322233333445566789999887653
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
+.+++++++.. ++++|.+...+|++|.+.|++. ++.||++|+.+++|.++..|.. ...-.+++|
T Consensus 114 ----d~~~l~~~i~~--------~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~---~~~~~~g~D 178 (369)
T cd00614 114 ----DPEALEAAIKP--------ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL---QRPLELGAD 178 (369)
T ss_pred ----CHHHHHHhcCC--------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc---CChhhhCCc
Confidence 36777777642 5899999999999999999985 5678999999999999877741 122245899
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeC-CCcccccC
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKK-SVMGSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk-~~i~~L~P 388 (872)
+++.|++|++|+ |.. .|+++.++ ++++.+..
T Consensus 179 ivv~S~tK~l~g-~~~~~gG~v~~~~~~l~~~l~~ 212 (369)
T cd00614 179 IVVHSATKYIGG-HSDVIAGVVVGSGEALIQRLRF 212 (369)
T ss_pred EEEeccceeccC-CCCceEEEEEeCcHHHHHHHHH
Confidence 999999999986 432 68888876 66665543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=134.84 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=146.5
Q ss_pred CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCC-CCcEEEeCC
Q 002866 148 SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPEN-EYGLVFTVS 224 (872)
Q Consensus 148 ~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~d-EY~VVFTsn 224 (872)
.+.++|+-+...+ .|+.+.+++.+ ...+.. ...|+.+. .....+.+++.+++++|++.+ +..|++|+|
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~--------~~~~~~-~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G 97 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNN--------FLANPE-NHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAG 97 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHH--------HHhCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Confidence 3578888777663 56667766432 112211 11343322 246778889999999997532 336999999
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
+++|+.+++.++ +.+||+|++..- .+.... ..++..|++++.++.+. +..++.+++++.+.. ++++
T Consensus 98 ~~~~l~~~~~~~-~~~gd~Vlv~~P-~y~~~~---~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~--------~~kl 163 (389)
T PRK05957 98 SNMAFMNAILAI-TDPGDEIILNTP-YYFNHE---MAITMAGCQPILVPTDD-NYQLQPEAIEQAITP--------KTRA 163 (389)
T ss_pred hHHHHHHHHHHh-cCCCCEEEEeCC-CCcCHH---HHHHhcCCEEEEeecCC-CCCcCHHHHHHhcCc--------CceE
Confidence 999999988877 578999887521 122222 23456799999999864 457899999987742 5889
Q ss_pred EEEeCccCcccchhc---HH-HHHHHHHCCcEEEeecccc----CCCCCcc-CCC-CCCCCcEEEEcccccCCCCCCc--
Q 002866 305 FVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSL----GPKDMDS-LGL-SLFRPDFIITSFYRVFGFDPTG-- 372 (872)
Q Consensus 305 Va~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~----aG~~mip-LDL-s~l~~DFlv~S~HK~fG~~PtG-- 372 (872)
+++++.+|.||.++| ++ +++.|+++|+++++|.+-. .+..+.+ ..+ ....--+++.|+-|.|| +.|
T Consensus 164 v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g--~~GlR 241 (389)
T PRK05957 164 IVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG--FASWR 241 (389)
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc--Cccce
Confidence 999999999999999 44 4577899999999999832 1110011 111 11223477888999998 458
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|++++.++.++.+.
T Consensus 242 iG~~~~~~~~~~~~~ 256 (389)
T PRK05957 242 IGYMVIPIHLLEAIK 256 (389)
T ss_pred eEEEecCHHHHHHHH
Confidence 999998877766654
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=137.78 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=118.9
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||. ....++++|++.|+.. .| +++|++.|+.++... +++|++|++....-......+...+++.|++
T Consensus 46 r~~~p~----~~~Le~~la~l~g~~~---al-~~~SG~~Al~~~l~~--l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~ 115 (380)
T PRK06176 46 RSGNPT----RFALEELIADLEGGVK---GF-AFASGLAGIHAVFSL--FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS 115 (380)
T ss_pred CCCChh----HHHHHHHHHHHhCCCC---EE-EECCHHHHHHHHHHH--cCCCCEEEEcCCChhHHHHHHHHHHHhcCeE
Confidence 457775 4578889999999743 35 456667899887753 4789998876431123344455667888999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++. .+.+++++++. ++|++|.+...+|.+|.+.|++ +++.||++|+++++|.+++.+....+
T Consensus 116 v~~vd~------~d~e~l~~ai~--------~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p 181 (380)
T PRK06176 116 CTIIDT------SDLSQIKKAIK--------PNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP 181 (380)
T ss_pred EEEcCC------CCHHHHHHhcC--------cCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence 887754 25778877664 2589999999999999999998 55788999999999999876642123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc-eEE-EEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG-FGC-LLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG-vG~-LyVR 379 (872)
+ .+++|++++|++|++++ |.. +|. ++.+
T Consensus 182 ~---~~gaDivv~S~tK~l~g-~~d~~gG~vv~~ 211 (380)
T PRK06176 182 L---LLGADIVVHSGTKYLGG-HSDVVAGLVTTN 211 (380)
T ss_pred c---ccCCCEEEecCceeccC-CccceeeEEEec
Confidence 3 46899999999999987 543 344 4433
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=137.62 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=115.9
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.|+||. ..+.+++||++. .++ .++++|+++|+.+++.++ +++||+||+.....+.........+++.|++
T Consensus 47 ry~~p~----~~~Le~~lA~l~--~~~---~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~ 116 (366)
T PRK07582 47 RASNPT----WRALEAALGELE--GAE---ALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQVRALAREYLAPLGVT 116 (366)
T ss_pred CCCCcc----HHHHHHHHHHHc--CCC---EEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEE
Confidence 456665 357888999998 222 667778889999999887 6899998876432223322233445668999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++.++.+.. . . .+. ++|+||.+...+|.+|.+.|++ +++.||++|+.++||.+++.+....+
T Consensus 117 v~~v~~~~~------~--~-~~~--------~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p 179 (366)
T PRK07582 117 VREAPTAGM------A--E-AAL--------AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRP 179 (366)
T ss_pred EEEECCCCh------H--H-Hhc--------cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCc
Confidence 999876431 1 1 121 2589999999999999999998 55678999999999999753322245
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCce--EEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGF--GCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGv--G~LyVR 379 (872)
++ +++|+++.|+|||+++ |.|+ |+++.+
T Consensus 180 ~~---~g~Divv~S~sK~l~G-~~g~~~G~v~~~ 209 (366)
T PRK07582 180 LE---LGADLVVASDTKALTG-HSDLLLGYVAGR 209 (366)
T ss_pred hh---cCCcEEEecccccccC-CCCeeEEEEEcC
Confidence 54 5789999999999987 7774 777654
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=137.67 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+++++.+++++| + + .++||.|+|+|+.+++.++ +++|+.|++.. ..|.++......++..|+++..++.+.
T Consensus 32 ~~~~~l~~~~a~~~g-~-~--~~~~~~~gt~a~~~~~~~l-~~~gd~v~~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~ 105 (338)
T cd06502 32 PTTAKLEARAAELFG-K-E--AALFVPSGTAANQLALAAH-TQPGGSVICHE-TAHIYTDEAGAPEFLSGVKLLPVPGEN 105 (338)
T ss_pred HHHHHHHHHHHHHhC-C-C--eEEEecCchHHHHHHHHHh-cCCCCeEEEec-CcceeeecCCcHHHHcCceEEeecCCC
Confidence 456789999999999 3 3 4999999999999998887 57899987653 234433211122334799999998753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc------CCCCCc
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL------GPKDMD 346 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~------aG~~mi 346 (872)
+.++.++|++++....+ ...+++++|.+++.+|. |..+|.+ +++.|+++|+++++|+|+. .|.
T Consensus 106 --~~~d~~~l~~~i~~~~~-~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--- 178 (338)
T cd06502 106 --GKLTPEDLEAAIRPRDD-IHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV--- 178 (338)
T ss_pred --CcCCHHHHHHHhhccCC-CcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC---
Confidence 56899999998864210 11236899999999995 7655653 3466789999999998752 221
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++.-..++|++++|+|||||. | |.++++.+++.++.+++
T Consensus 179 ~~~~~~~~~d~~~~s~sK~~~~-~-~g~~~~~~~~~~~~~~~ 218 (338)
T cd06502 179 ALKTYKSGVDSVSFCLSKGGGA-P-VGAVVVGNRDFIARARR 218 (338)
T ss_pred CHHHHHhcCCEEEEeccccCCC-c-cceEEECCHHHHHHHHH
Confidence 2221124789999999999996 5 43345567677666653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-11 Score=136.58 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=131.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 194 EKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 194 sS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
++.++..++=+-+++++|.+++++.=+||+|+|+|+-+..... .+.+...++++ +.-|.|+. +.++-.|++++.|
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S-~~aH~Sv~---KAa~llgi~~~~V 205 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYAS-RESHYSVF---KAARMYRMECVKV 205 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEc-CCccHHHH---HHHHhcCCcceEe
Confidence 3557778888999999999876666789999999966533321 11122234444 44567675 4455579999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCc-----EEEeeccccCCC---
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHW-----HVLLDAGSLGPK--- 343 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~-----~VLVDAAQ~aG~--- 343 (872)
|++. +++++.++|+++|.+.. .+.-+|+.+.-+-.+|++=||+.| ..|+++|+ ++|||||=.+..
T Consensus 206 p~d~-~g~mD~~aL~~aI~~d~-----~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf 279 (470)
T PLN02263 206 DTLV-SGEIDCADFKAKLLANK-----DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPF 279 (470)
T ss_pred ccCC-CCcCcHHHHHHHHHhCC-----CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhh
Confidence 9975 68999999999997531 245688888999999999999855 56788886 999999942211
Q ss_pred --CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 344 --DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 344 --~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
..-++|... ++|-+++++|||++. |.++|++++|+...
T Consensus 280 ~~~~~~~df~~-~vDSIsvD~HK~l~~-P~~cgvll~R~~~~ 319 (470)
T PLN02263 280 VKRAPKVTFKK-PIGSVSVSGHKFVGC-PMPCGVQITRMEHI 319 (470)
T ss_pred cccccccCCCc-CccEEEECCccccCC-CcCEEEEEEehhhH
Confidence 001356543 499999999999998 99999999997543
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=128.79 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.|++++++++.+ + .|++|+|+++.+ .++..+ +++|+.|++. +..|.+... .++..|+++..++.
T Consensus 61 ~~~~~l~~~la~~~~~~-~--~i~~~~G~~~~~-~~l~~~-~~~gd~v~~~-~~~~~~~~~---~~~~~g~~~~~~~~-- 129 (360)
T TIGR00858 61 PLHEELEEELAEWKGTE-A--ALLFSSGYLANV-GVISAL-VGKGDLILSD-ALNHASLID---GCRLSGARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHHHhCCC-C--EEEECchHHHHH-HHHHHh-CCCCCEEEEE-ccccHHHHH---HHHhcCCceEEecC--
Confidence 46778999999999963 2 588877755544 455555 5789988765 344555533 24456888877652
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc--------
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS-------- 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip-------- 347 (872)
++.++|++.+... .+.+++++.++++.|.||.+.|++. ++.|+++|+++++|.++..+. .+
T Consensus 130 ----~d~~~l~~~~~~~----~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~~ 199 (360)
T TIGR00858 130 ----NDVEHLERLLEKN----RGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGV--LGEDGRGTLE 199 (360)
T ss_pred ----CCHHHHHHHHHHc----ccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccC--cCCCCCchHH
Confidence 4678888888642 1135789999999999999999985 567899999999999987653 11
Q ss_pred -CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 -LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 -LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.++...+.|+++.|++|+|| |.| |+++.+++.++.+
T Consensus 200 ~~~~~~~~~~i~i~s~sK~~~--~~g-G~~~~~~~~~~~~ 236 (360)
T TIGR00858 200 HFGLKPEPVDIQVGTLSKALG--SYG-AYVAGSQALIDYL 236 (360)
T ss_pred hcCCCccCCcEEEEechhhhh--ccC-cEEEcCHHHHHHH
Confidence 12223467999999999998 567 8777776655444
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=132.44 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=133.1
Q ss_pred CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 148 SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 148 ~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
.+.+.|+.+-..+ .|+.+++++.+ .+. .+ ..|..+ .-....|+.||+++|++++ +|++|+|++
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~-~~---~~Y~~~---~g~~~lr~aia~~~~~~~~--~I~it~Ga~ 85 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAA-------RLG-DL---AAYPST---EDERRARAAVAARHGRTPD--EVLLLAGAA 85 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHH-------Hhh-Hh---hcCCCc---cchHHHHHHHHHHhCcChh--hEEECCCHH
Confidence 4467777765543 45666766432 111 11 124322 2346799999999999886 499999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+|+.+++. +++++.++. +++.......++..|+++..+|++.. ..++.+.+ . .+++++.
T Consensus 86 ~al~~~~~---l~~~~viv~-----~P~y~~~~~~~~~~G~~i~~v~~~~~-~~~d~~~l----~--------~~~~~i~ 144 (349)
T PRK07908 86 EGFALLAR---LRPRRAAVV-----HPSFTEPEAALRAAGIPVHRVVLDPP-FRLDPAAV----P--------DDADLVV 144 (349)
T ss_pred HHHHHHHh---cCCCeEEEe-----CCCChHHHHHHHHcCCEEEeeccCcc-cCcChhHh----c--------cCCCEEE
Confidence 99999998 455544433 23444444567778999999998753 45666533 2 1478999
Q ss_pred EeCccCcccchhcHHHHHHHHHCCcEEEeecccc--CCCCCccCCCCCCC-CcEE-EEcccccCCCCCCceEEEEEeCCC
Q 002866 307 FPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSL--GPKDMDSLGLSLFR-PDFI-ITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~--aG~~mipLDLs~l~-~DFl-v~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+++.+|.||+++|.+.+....+++.++++|.++. .... +..+.... .+++ +.|++|.||.+...+|.+++.++.
T Consensus 145 l~np~NPTG~~~~~~~l~~l~~~~~~iIvDe~y~~~~~~~--~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~ 222 (349)
T PRK07908 145 IGNPTNPTSVLHPAEQLLALRRPGRILVVDEAFADAVPGE--PESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDV 222 (349)
T ss_pred EcCCCCCCCCCcCHHHHHHHHhcCCEEEEECcchhhccCC--ccccccccCCCEEEEeecccccCCccceeeeeecCHHH
Confidence 9999999999999986543334577888999863 3221 23332222 2444 459999988212236999998888
Q ss_pred cccccCC
Q 002866 383 MGSLQNQ 389 (872)
Q Consensus 383 i~~L~P~ 389 (872)
++.+.+.
T Consensus 223 ~~~~~~~ 229 (349)
T PRK07908 223 LARLTRG 229 (349)
T ss_pred HHHHHhc
Confidence 7777643
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=137.66 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HHHHHHHHHHcCcEEEEEeccCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
+++.++++|+++|++. .|+| +++|.|+.++..++ +++||+||+... .|.. ...+...++..|+++.+++.+
T Consensus 65 ~~~le~~lA~l~g~~~---av~~-~sG~~Ai~~al~al-~~~Gd~Vl~~~~-~y~~t~~~~~~~~~~~G~~v~~vd~~-- 136 (389)
T PRK05968 65 VRAFEEMLAKLEGAED---ARGF-ASGMAAISSTVLSF-VEPGDRIVAVRH-VYPDAFRLFETILKRMGVEVDYVDGR-- 136 (389)
T ss_pred HHHHHHHHHHHhCCCc---EEEE-CCHHHHHHHHHHHH-hCCCCEEEEeCC-CchHHHHHHHHHHHHcCceEEEeCCC--
Confidence 6789999999999953 4655 56678998877765 688999887643 3333 334555677789999987642
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
+.+++++++. +|+||.+...+|.++.+.|++ +.+.||++|+.+++|++++.+....++ .+++|
T Consensus 137 ----d~~~l~~~i~---------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~---~~g~D 200 (389)
T PRK05968 137 ----DEEAVAKALP---------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI---TLGVD 200 (389)
T ss_pred ----CHHHHHHhcc---------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch---hcCCc
Confidence 5677776652 478999999999999999997 456789999999999998776311233 35899
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++++|++|++++ |.+ .|+++.+++.++.+.
T Consensus 201 ivv~S~tK~l~g-~~~~~gG~i~~~~~~~~~l~ 232 (389)
T PRK05968 201 LVIHSASKYLGG-HSDTVAGVVAGSKEHIARIN 232 (389)
T ss_pred EEEeeccccccC-CCCeEEEEEEECHHHHHHHH
Confidence 999999999997 765 577776766555443
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=129.89 Aligned_cols=232 Identities=15% Similarity=0.113 Sum_probs=158.4
Q ss_pred hHHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhc-cCcCcCCCchHHHHHHHHHHHHHhcCCC
Q 002866 135 KIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLS-NHALYGGAEKGTVEHDIKTRIMDHLNIP 213 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~-~~~~ygNpsS~~~ieeARerIA~lLgA~ 213 (872)
.+..+|. .|..-.+.||||-++-+..|+.+..+..+. ...+...-+. ++.. +.+.-..+-+..=.++|-++|+.
T Consensus 18 pl~~lr~-~f~lp~~viyLdgnSLGa~p~~~~a~~~q~---a~deW~~~lirsw~~-a~~~W~~lp~~lgdklApLiGA~ 92 (407)
T COG3844 18 PLAKLRD-RFALPGGVIYLDGNSLGARPRAVTARLQQV---ATDEWGEGLIRSWNK-AKADWFDLPERLGDKLAPLIGAR 92 (407)
T ss_pred chhhhHh-hccCCCCeEEeeccccccCchHHHHHHHHH---HHHHHHhhhhhhhcc-cCCchhhchhHHHHHhhhhhcCC
Confidence 4677886 476666799999999999996554442110 0001111111 0100 12222345556778999999999
Q ss_pred CCCCcEEEeCCHHHHH-HHHHhhCCCCCCCeEEEecccCchhHHHHHH-HHHHcCcEEEEEeccCCCCccCHHHHHHHHh
Q 002866 214 ENEYGLVFTVSRGSAF-KLLAESYPFHTNKKLLTMFDYESQSVNWMAQ-SAKEKGAKVYSAWFKWPTLKLCSTDLRKQIS 291 (872)
Q Consensus 214 ~dEY~VVFTsnATeAL-nLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~-~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~ 291 (872)
+.| ||.|.+++--+ +.++.+|..++|+.+|+.-...-++=+.+.+ .++-.|..... .+.+.+.++++.+.
T Consensus 93 ~~E--vvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~------~~~~~P~~~~~~~~ 164 (407)
T COG3844 93 AGE--VVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDL------EGVIAPRALEEAIT 164 (407)
T ss_pred CCc--eEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccc------eeeeChHHHHHhhc
Confidence 886 88887776654 4566678778888876553222222222221 12222222111 24566778888776
Q ss_pred hhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCC
Q 002866 292 SKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 292 ~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~P 370 (872)
. .+.+|.+++++..||+.+++..| +.||++|+++..|-|+++|. +|+||-..++||-+.+.||++-+.|
T Consensus 165 d--------d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGa--vp~~Lh~~gaDfaigcsyKYLNgGP 234 (407)
T COG3844 165 D--------DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGA--VPVDLHAAGADFAIGCSYKYLNGGP 234 (407)
T ss_pred c--------ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCC--cceeecccCCCeeeeeeceeccCCC
Confidence 4 59999999999999999999865 67899999999999999997 8999999999999999999854339
Q ss_pred CceEEEEEeCCCcccccCC
Q 002866 371 TGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 371 tGvG~LyVRk~~i~~L~P~ 389 (872)
-+.++|||.++..+...|+
T Consensus 235 Gapa~l~v~~~h~e~~~~~ 253 (407)
T COG3844 235 GAPAGLFVAPRHRERSWPP 253 (407)
T ss_pred CCceeEEeccccccccccc
Confidence 9999999999887665444
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=136.54 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=126.9
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGae 268 (872)
|+||. ..+.+++||++.|.+ .+++|+|+++|+.+++.++ +++|++|++... .|.+. ..+...++..|++
T Consensus 61 ~~~p~----~~~Le~~iA~~~g~~----~~l~~~sG~~Ai~~al~~l-l~~Gd~Vl~~~~-~y~~~~~~~~~~~~~~G~~ 130 (400)
T PRK06234 61 LGNPT----STEVENKLALLEGGE----AAVVAASGMGAISSSLWSA-LKAGDHVVASDT-LYGCTFALLNHGLTRYGVE 130 (400)
T ss_pred CCCcc----HHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecC-ccchHHHHHHHHHhhCCeE
Confidence 45665 457899999999973 2678888899998877766 578999887643 23333 3334556778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHC--CcEEEeeccccCCCCC
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQN--HWHVLLDAGSLGPKDM 345 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~--G~~VLVDAAQ~aG~~m 345 (872)
+.+++.. +.++++++|.. +|++|.+...+|+||.+.|++ +++.|+++ |+.+++|.+...+...
T Consensus 131 v~~vd~~------d~e~l~~~i~~--------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~ 196 (400)
T PRK06234 131 VTFVDTS------NLEEVRNALKA--------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ 196 (400)
T ss_pred EEEECCC------CHHHHHHHhcc--------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence 9988653 57888887753 589999999999999999997 45678886 9999999998766421
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.++ ..++|+++.|++|++++ |.. .|+++.+++.++.++
T Consensus 197 ~~l---~~g~Divv~S~sK~l~g-~g~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 197 RPL---QLGADVVVHSATKYLNG-HGDVIAGFVVGKEEFINQVK 236 (400)
T ss_pred Cch---hhCCcEEEeeccccccC-CCCceeEEEEecHHHHHHHH
Confidence 122 35899999999999986 432 588888877655543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=131.77 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=140.1
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----C--CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----N--IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----g--A~~dEY~VVF 221 (872)
..++|+.+...+ .++.+.+++.+ .+...+ ..|+.+. -..+.|+.||+++ | ++++ +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~Y~~~~---g~~~lr~~ia~~~~~~~~~~~~~~--~i~~ 95 (388)
T PRK07337 31 DIIHMGIGEPDFTAPEPVVEAAAR-------ALRRGV---TQYTSAL---GLAPLREAIAAWYARRFGLDVAPE--RIVV 95 (388)
T ss_pred CEEEeCCcCCCCCCCHHHHHHHHH-------HHhcCC---CCCCCCC---CCHHHHHHHHHHHHHHhCCCCChH--hEEE
Confidence 479999988764 45566665322 111111 1343321 2457888899887 4 4554 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+.+++..+ .++||+|++.. ..+... ...++..|++++.+|++.. +..++.+++++.+..
T Consensus 96 t~G~~~al~~~~~~l-~~~gd~Vlv~~-p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 162 (388)
T PRK07337 96 TAGASAALLLACLAL-VERGDEVLMPD-PSYPCN---RHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE-------- 162 (388)
T ss_pred ecCcHHHHHHHHHHh-cCCCCEEEEeC-CCchhh---HHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc--------
Confidence 999999999999988 57899987653 223333 2334567999999998642 346888988877742
Q ss_pred CceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc-ccCCCCCccCCCCCCCCcEE-EEcccccCCCCCCc--
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG-SLGPKDMDSLGLSLFRPDFI-ITSFYRVFGFDPTG-- 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA-Q~aG~~mipLDLs~l~~DFl-v~S~HK~fG~~PtG-- 372 (872)
+++++.++..+|.||..++.+ +++.|+++++++++|-+ +....+..+.....+..+.+ +.|+.|.||. .|
T Consensus 163 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~--~G~R 240 (388)
T PRK07337 163 RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNM--TGWR 240 (388)
T ss_pred cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCC--chhh
Confidence 578999999999999999964 34667899999999976 32221101122223345554 5699999984 36
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|++++.++.++.+.
T Consensus 241 iG~~~~~~~l~~~l~ 255 (388)
T PRK07337 241 LGWLVVPEALVGTFE 255 (388)
T ss_pred eeeeecCHHHHHHHH
Confidence 899998766555443
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=136.85 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP- 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p- 277 (872)
+.+.|++|+++++.. .|++|.|+|+|+.++..++ +++|| |++..-| ..+...+ .+..|++++.++++..
T Consensus 80 ~~~Lreaia~~~~~~----~vv~t~ggt~A~~~~~~al-l~pGD-Vii~~p~-~~~~~~~---i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYP----YTIPTHQGRAAEQILFPVL-IKKGD-VVPSNYH-FDTTRAH---IELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCC----cEEECCCHHHHHHHHHHHh-CCCCC-EEccCCc-ccchHHH---HHHcCCEEEEEeccccc
Confidence 567899999999973 3899999999999998887 78999 6654222 2223232 2447999999998531
Q ss_pred --------CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCccc-chhcHH----HHHHHHHCCcEEEeeccccCCCC
Q 002866 278 --------TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTG-AKYSYQ----WMALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 278 --------~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG-~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
.+.++.++|+++|... ..++|+++++...+|.|| +.++.+ +.+.|+++|+++++|+|++...-
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~----~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a 225 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEV----GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA 225 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhc----CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence 2459999999999742 113699999999999998 777764 33567999999999999865310
Q ss_pred ---------CccCCCCC------CCCcEEEEcccccCCCCCCceEEEEEeC-CCcccccCC
Q 002866 345 ---------MDSLGLSL------FRPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQNQ 389 (872)
Q Consensus 345 ---------mipLDLs~------l~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~P~ 389 (872)
.....+.. ..+|++++|+||++.+ |.| |+|+.++ +++..++..
T Consensus 226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~-~~G-G~i~~~d~~l~~~~~~~ 284 (460)
T PRK13238 226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMV-NIG-GLLCFRDEDLFTECRTL 284 (460)
T ss_pred hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCC-cce-eEEEcChHHHHHHhhhc
Confidence 01222221 2489999999998766 777 8888884 566666543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=149.88 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH----HHHHHhhCCCCC---CC-eEEE-ecccCchhHHHHHHHHHHcC
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA----FKLLAESYPFHT---NK-KLLT-MFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA----LnLVaeslpf~~---Gd-~ILT-~~DhEHnSVl~~~~~AkrkG 266 (872)
.+.+.+..+.+++++|.+. +-|-+|++.- .-+++..|.-.+ ++ .+|+ ...|.+|.. .+...|
T Consensus 542 lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa-----sa~~~G 612 (954)
T PRK12566 542 RAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA-----SAQMAG 612 (954)
T ss_pred HHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH-----HHHHCC
Confidence 4788888899999999963 4566655542 233444443222 22 3444 334544421 255679
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCC
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDM 345 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~m 345 (872)
++|+.+|++. +|.+|.++|+++|.+. .+++..|.+++.++..+...|++ +++.||++|+.|++|+||..+.
T Consensus 613 ieVv~Vp~D~-~G~iDle~L~a~I~~~-----~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~-- 684 (954)
T PRK12566 613 MRVVIVECDP-DGNVDLDDLKAKAAAA-----GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQ-- 684 (954)
T ss_pred CEEEEeccCC-CCCcCHHHHHHHhhcc-----CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhc--
Confidence 9999999985 7899999999999632 24577778888777777778897 5578899999999999998775
Q ss_pred ccCC-CCCCCCcEEEEcccccCCCCCCceEEEEEeC-CCcccccCC
Q 002866 346 DSLG-LSLFRPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQNQ 389 (872)
Q Consensus 346 ipLD-Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~P~ 389 (872)
..++ ..++++||+++++|||||. |.|.|++|+.. ...+.|.|.
T Consensus 685 ~~l~~Pg~~GADi~~~s~HKtf~~-P~G~GGP~vG~iav~~~L~pf 729 (954)
T PRK12566 685 VGLARPADIGADVSHMNLHKTFCI-PHGGGGPGMGPIGVRAHLAPF 729 (954)
T ss_pred cCCCChhhcCCCEEEecCCcccCc-CccCCCCccchhhhhhhhhhh
Confidence 4666 4789999999999999999 99999999998 777767664
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=134.69 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...++..+.+++++|++ .+++|+|+|+|+++++.++.+++||+|++.. ..+.+.. ..+...|++++.++++.
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~-~t~~~~~---~~~~~~G~~~v~vd~d~ 102 (376)
T TIGR02379 31 PFSRRCETWLENRTGTK----KALLTPSCTAALEMAALLLDIQPGDEVIMPS-YTFVSTA---NAFVLRGAKIVFVDIRP 102 (376)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECC-CCcHHHH---HHHHHcCCEEEEEecCC
Confidence 34566777888888873 3999999999999999988888999988753 3344433 23345799999999987
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
.+..++.+++++++.. +|++|.. +|.+|...|++ +++.|+++|+.|+.|++|+.|. .++-...+.
T Consensus 103 ~~~~~d~~~le~~i~~--------~tk~Iip---~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~---~~~~~~~g~ 168 (376)
T TIGR02379 103 DTMNIDETLIESAITH--------RTKAIVP---VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMS---TYKGRALGS 168 (376)
T ss_pred CcCCCCHHHHHHhcCc--------CceEEEE---eCCCCCccCHHHHHHHHHHCCCEEEEECccccCC---ccCCcccCC
Confidence 6567899999887753 5788864 45789999997 5678899999999999998875 244444443
Q ss_pred --cEEEEccccc--CC-CCCCceEEEEEe-CCCcccccC
Q 002866 356 --DFIITSFYRV--FG-FDPTGFGCLLIK-KSVMGSLQN 388 (872)
Q Consensus 356 --DFlv~S~HK~--fG-~~PtGvG~LyVR-k~~i~~L~P 388 (872)
|+.+||||+. +. + +. .|+++.+ ++..+.+++
T Consensus 169 ~~~~~~fSf~~~K~l~~g-~~-gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 169 IGHLGTFSFHETKNYTSG-GE-GGALLINDQAFIERAEI 205 (376)
T ss_pred CCCEEEEeCCCCCcCccc-CC-ceEEEECCHHHHHHHHH
Confidence 9999999983 22 2 33 4666665 456666654
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=137.61 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.+...+.+|++.|+. + +++++++++|+.++.. + +++||+||+... .+.... .+...+++.|++++.++.
T Consensus 135 ~~aLE~~lA~leg~e---~-ai~~~SG~aAi~~il~-l-l~~GD~VI~~~~-~y~~t~~ll~~~l~~~G~~v~~vd~--- 204 (464)
T PLN02509 135 RDALESLLAKLDKAD---R-AFCFTSGMAALSAVTH-L-IKNGEEIVAGDD-VYGGSDRLLSQVVPRSGVVVKRVNT--- 204 (464)
T ss_pred HHHHHHHHHHHhCCC---E-EEEeCcHHHHHHHHHH-H-hCCCCEEEEcCC-chhhHHHHHHHHHHHCCeEEEEeCC---
Confidence 466778889998863 2 4445566788877664 3 578999887543 344443 333556778999887753
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPD 356 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~D 356 (872)
.+.++++++|. ++|++|.+.+.+|.+|.+.|++ +++.||++|+.+++|.|++.|.. ...+ .+++|
T Consensus 205 ---~d~e~l~~ai~--------~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~--~~pl-~~gaD 270 (464)
T PLN02509 205 ---TNLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL--SRPL-ELGAD 270 (464)
T ss_pred ---CCHHHHHHhCC--------cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc--CChh-hcCCc
Confidence 24677777664 3689999999999999999998 55788999999999999988752 2222 36899
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
++++|++||+++ |.+ .|+++++.+
T Consensus 271 ivv~S~tK~l~G-~gdv~gG~v~~~~~ 296 (464)
T PLN02509 271 IVMHSATKFIAG-HSDVMAGVLAVKGE 296 (464)
T ss_pred EEEecCcccccC-CCccceeEEEeccH
Confidence 999999999987 666 677777654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-11 Score=136.71 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEE---eCCHHHHHHHHHhhCCCCCCCeEEEecccC---chhHHHHHHHH--HHcCcE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVF---TVSRGSAFKLLAESYPFHTNKKLLTMFDYE---SQSVNWMAQSA--KEKGAK 268 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVF---TsnATeALnLVaeslpf~~Gd~ILT~~DhE---HnSVl~~~~~A--krkGae 268 (872)
++.+-++++.+++|++.++. ++| +.+++.|+..+..++ +++||.|+.. +.+ |-+-....... ...+..
T Consensus 80 ~lE~~~~~~~~~~f~~~~~~--~~~nv~~~SG~~AN~av~~aL-~~pgD~Il~~-d~~~gGhl~H~~~~~g~~~s~~~~~ 155 (475)
T PLN03226 80 QIETLCQKRALEAFRLDPEK--WGVNVQPLSGSPANFAVYTAL-LQPHDRIMGL-DLPHGGHLSHGYQTDGKKISATSIY 155 (475)
T ss_pred HHHHHHHHHHHHHhCCCcce--eEEecCcCchHHHHHHHHHHh-CCCCCEEEEC-CCCcCcchhhhhhhcccccccceEE
Confidence 45556899999999998764 444 366777877788777 5799999873 211 11111111110 111222
Q ss_pred EEEEec--cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCC
Q 002866 269 VYSAWF--KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDM 345 (872)
Q Consensus 269 V~~Vpv--d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~m 345 (872)
+..+++ +..++.||.++|++++... +++++++. .+ .+|...|++.+ ..|+++|++++||+||.+|.
T Consensus 156 ~~~~~y~~~~~~g~iD~d~Le~~l~~~-------~pklIv~~-~S-~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gl-- 224 (475)
T PLN03226 156 FESMPYRLDESTGLIDYDKLEKKAMLF-------RPKLIIAG-AS-AYPRDWDYARMRKIADKVGALLMCDMAHISGL-- 224 (475)
T ss_pred EEeeeeeecCCCCCcCHHHHHHHHhhc-------CCeEEEEe-cC-cCCCccCHHHHHHHHHHcCCEEEEEchhhhCc--
Confidence 233333 4446889999999988642 35666553 34 48999999854 57899999999999999986
Q ss_pred ccCCCCC---CCCcEEEEcccccCCCCCCceEEEEEeCCCccc
Q 002866 346 DSLGLSL---FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGS 385 (872)
Q Consensus 346 ipLDLs~---l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~ 385 (872)
+..++.. -.+|++++++||||++ |.| |+++++++..+.
T Consensus 225 i~~~~~~~p~~~~Div~~t~hK~L~G-P~G-g~I~~~~~~~~~ 265 (475)
T PLN03226 225 VAAQEAASPFEYCDVVTTTTHKSLRG-PRG-GMIFFRKGPKPP 265 (475)
T ss_pred ccCCCCCCCCCCCeEEEecCcccccC-CCc-eEEEEchhhccc
Confidence 5555432 2699999999999966 899 888888876544
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=129.16 Aligned_cols=207 Identities=11% Similarity=0.129 Sum_probs=143.5
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.+-||.+-... +|+.+++++.+ .+... ....|.++. ..+.|+.||++++++++ +|++|+|+++|
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~-------~~~~~--~~~~y~~~~----~~~lr~~ia~~~~~~~~--~i~it~G~~~~ 88 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQE-------IVKSS--QVNIYPDPT----AEKLREELARYCSVVPT--NIFVGNGSDEI 88 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHH-------HhhcC--cccCCCCcc----HHHHHHHHHHHhCCCcc--cEEEecCHHHH
Confidence 45677777763 66777776432 11110 111243332 36899999999999876 59999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+.+++..+ +.+||+|++.. ++...+...++..|+++..++++. ++.++.+++++++.. .+++++.++
T Consensus 89 l~~~~~~l-~~~gd~Vlv~~----p~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~-------~~~k~v~l~ 155 (351)
T PRK14807 89 IHLIMLAF-INKGDVVIYPH----PSFAMYSVYSKIAGAVEIPVKLKE-DYTYDVGSFIKVIEK-------YQPKLVFLC 155 (351)
T ss_pred HHHHHHHh-cCCCCEEEEeC----CChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHHHhhc-------cCCCEEEEe
Confidence 99999987 57899988652 233345556777899999999874 456889999888853 158899999
Q ss_pred CccCcccchhcHHHH-HHHHHCCcEEEeecccc--CCCCCccCC-CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 309 VQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSL--GPKDMDSLG-LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 309 ~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~--aG~~mipLD-Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
..+|.||..+|.+.+ +.+++++..+++|.+.. .+.. ... +....--+++.|+-|.||.+=-.+|.++..+++++
T Consensus 156 ~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~--~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 156 NPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNT--IVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK 233 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccc--hHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence 999999999999855 45677777899999952 2221 111 12223358889999999831123777776555554
Q ss_pred cc
Q 002866 385 SL 386 (872)
Q Consensus 385 ~L 386 (872)
.+
T Consensus 234 ~~ 235 (351)
T PRK14807 234 YL 235 (351)
T ss_pred HH
Confidence 44
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-11 Score=129.03 Aligned_cols=219 Identities=16% Similarity=0.213 Sum_probs=147.0
Q ss_pred hhHHHHHhhcccCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC
Q 002866 134 DKIDQLRANEYLHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI 212 (872)
Q Consensus 134 ~~ID~lR~~EFP~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA 212 (872)
..+.++++ +|+.. ..+.|+.+-... .++.+.+++.+ .+ ..+ ..|..+ ...+.|+.||+++++
T Consensus 17 ~~~~~~~~-~~~~~-~~i~l~~n~~~~~~~~~v~~a~~~-------~~-~~~---~~~p~~----g~~~lr~~ia~~~~~ 79 (359)
T PRK03158 17 KSIEEVKR-EYGLE-KIVKLASNENPYGPSPKVKEAIAA-------HL-DEL---ALYPDG----YAPELRTKVAKHLGV 79 (359)
T ss_pred CCHHHHHH-hcCCC-ceEEecCCCCCCCCCHHHHHHHHH-------HH-HHh---hcCCCC----cHHHHHHHHHHHhCC
Confidence 34555654 57644 567775443322 35556666432 11 111 112111 345799999999999
Q ss_pred CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhh
Q 002866 213 PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISS 292 (872)
Q Consensus 213 ~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~ 292 (872)
+++ .|+||+|+++++.+++..+ +++|+.|++.. ++...+...+...|+++..+|++ +..++.+++++.+..
T Consensus 80 ~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~v~~~~----p~y~~~~~~~~~~g~~~~~~~~~--~~~~d~~~l~~~~~~ 150 (359)
T PRK03158 80 DEE--QLLFGAGLDEVIQMISRAL-LNPGTNTVMAE----PTFSQYRHNAIIEGAEVREVPLK--DGGHDLEAMLKAIDE 150 (359)
T ss_pred CHH--HEEECCCHHHHHHHHHHHH-hCCCCEEEEcC----CCHHHHHHHHHHcCCeEEEEecC--CCCcCHHHHHHhcCC
Confidence 876 5999999999999999887 47899987652 22333445566789999999986 356788888776642
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHH--CCcEEEeeccccC----CCCCccCC-CCCCCCcEEEEcccc
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQ--NHWHVLLDAGSLG----PKDMDSLG-LSLFRPDFIITSFYR 364 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are--~G~~VLVDAAQ~a----G~~mipLD-Ls~l~~DFlv~S~HK 364 (872)
+++++.++..+|.||.++|.+. .+.++. +++++++|-+..- +.....+. +...+..+++.|+-|
T Consensus 151 --------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK 222 (359)
T PRK03158 151 --------QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSK 222 (359)
T ss_pred --------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechH
Confidence 5789999999999999999974 444544 5899999999531 11000111 122345688899999
Q ss_pred cCCCCCCce--EEEEEeCCCcccccC
Q 002866 365 VFGFDPTGF--GCLLIKKSVMGSLQN 388 (872)
Q Consensus 365 ~fG~~PtGv--G~LyVRk~~i~~L~P 388 (872)
.||. .|+ |+++..++.++.+..
T Consensus 223 ~~g~--~GlRiG~~v~~~~~~~~~~~ 246 (359)
T PRK03158 223 AYGL--AALRVGYGIASEELIEKLNI 246 (359)
T ss_pred hhcC--cchhhehhcCCHHHHHHHHH
Confidence 9983 475 999988887766654
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=128.73 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=139.4
Q ss_pred CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 148 SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 148 ~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
.+.++|+.+.... +|+.+.+++.+ .+...+ ..|..+. ..+.|+.||++++++++ +|++|+|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~-------~~~~~~---~~y~~~~----~~~lr~aia~~~~~~~~--~I~it~G~~ 87 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRA-------ALGDDL---RLYPDPN----ADALRQAIAAYYGLDPE--QVFVGNGSD 87 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHH-------Hhhhhh---hcCCCCc----HHHHHHHHHHHhCCCHH--HEEEcCCHH
Confidence 3578999887765 35666665432 111111 2343332 26899999999999886 499999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+|+.+++..+ +++||+|++..- .+. .+...++..|+++..+|++. ++.++.+++++ .+++++
T Consensus 88 ~al~~~~~~l-~~~gd~vlv~~P-~y~---~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~------------~~~~v~ 149 (353)
T PRK05387 88 EVLAHAFLAF-FNHDRPLLFPDI-TYS---FYPVYAGLYGIPYEEIPLDD-DFSIDVEDYLR------------PNGGII 149 (353)
T ss_pred HHHHHHHHHh-cCCCCEEEEeCC-CHH---HHHHHHHHcCCEEEEeecCC-CCCCCHHHHHh------------cCCEEE
Confidence 9999999988 478999876531 222 23344567899999999864 45678877642 246788
Q ss_pred EeCccCcccchhcHHHH-HHHHHC-CcEEEeeccc--cCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 307 FPVQSRVTGAKYSYQWM-ALAQQN-HWHVLLDAGS--LGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I-~~Are~-G~~VLVDAAQ--~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
++.-+|.||.++|.+.+ +.++.. ++++++|-+- +.+....++ +...+..+++.|+.|.||.+--.+|+++..++.
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~ 228 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPL-IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPEL 228 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHH-HhhCCCEEEEEehhHhhcchhhhceeeecCHHH
Confidence 99999999999999754 445443 9999999873 222110111 122345799999999988311238999887776
Q ss_pred ccccc
Q 002866 383 MGSLQ 387 (872)
Q Consensus 383 i~~L~ 387 (872)
++.+.
T Consensus 229 ~~~l~ 233 (353)
T PRK05387 229 IEALN 233 (353)
T ss_pred HHHHH
Confidence 66554
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=128.41 Aligned_cols=195 Identities=8% Similarity=0.077 Sum_probs=131.0
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.+.|+.+-.. ++|+.+++++.+ .+ .. ...|..+ ...+.|+.||++++++++ +|++|+|++++
T Consensus 22 ~i~l~~~~~~~~~p~~~~~a~~~-------~~-~~---~~~y~~~----~~~~lr~~ia~~~~~~~~--~i~it~Ga~~~ 84 (356)
T PRK08056 22 LLDFSANINPLGMPVSLKRAIID-------NL-DC---AERYPDV----EYRHLHQALARHHQVPAS--WILAGNGETES 84 (356)
T ss_pred EEEeccccCCCCCCHHHHHHHHH-------HH-Hh---cccCcCc----cHHHHHHHHHHHhCcChh--hEEECCCHHHH
Confidence 6788865333 366777776432 11 11 1234322 257899999999999887 49999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC-ccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL-KLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g-~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
+.+++..+ .+|+.++.. ++...+...++..|+++..+|.+..++ .++ .++.+.+. +++++|.+
T Consensus 85 l~~~~~~l--~~g~viv~~-----P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~--------~~~k~v~l 148 (356)
T PRK08056 85 IFAVVSGL--KPRRAMIVT-----PGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT--------PDLDCLFL 148 (356)
T ss_pred HHHHHHHh--CCCCEEEeC-----CCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc--------CCCCEEEE
Confidence 99999886 466644432 223345566778899999999864322 333 34444442 35889999
Q ss_pred eCccCcccchhcH---H-HHHHHHHCCcEEEeecc--ccCCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 308 PVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAG--SLGPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 308 p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAA--Q~aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
++.+|.||..+|. + +++.|+++++++++|.+ .+.... .+++ +...+..+++.|++|+||.+=..+|.++.
T Consensus 149 ~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~v~ 226 (356)
T PRK08056 149 CTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ-LADNPHLWVLRSLTKFYAIPGLRLGYLVN 226 (356)
T ss_pred eCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-hccCCCEEEEEechhhccCcchhheeeec
Confidence 9999999999994 3 45678899999999998 222110 0121 34456789999999999931233677765
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=127.82 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...++..+.+++++|++ .+++|+|+|+|+.+++..+.+++|++|++.. ..+.++. ..+...|++++.++++.
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~-~t~~~~~---~~~~~~G~~~v~~d~d~ 102 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA----KVLLTPSCTAALEMAALLLDIQPGDEVIMPS-YTFVSTA---NAFVLRGAKIVFVDIRP 102 (375)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHhCCCCCCEEEECC-CCcHHHH---HHHHHcCCEEEEEecCC
Confidence 34566777789999883 3999999999999988777678999988763 3344443 34566799999999987
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCC--
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLF-- 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l-- 353 (872)
.+..++.+++++++.. +|++|.+. |.+|...+++ +++.|+++|+.++.|++|+.|. ..+-...
T Consensus 103 ~~~~~d~~~le~~i~~--------~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~---~~~~~~~g~ 168 (375)
T PRK11706 103 DTMNIDETLIEAAITP--------KTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMS---TYKGRALGT 168 (375)
T ss_pred CcCCcCHHHHHHhcCC--------CCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECcccccc---ccCCeeeec
Confidence 5567899999988753 47777765 4699999997 5677899999999999998874 2332222
Q ss_pred CCcEEEEccc--ccCCCCCCce-EEEEEeC
Q 002866 354 RPDFIITSFY--RVFGFDPTGF-GCLLIKK 380 (872)
Q Consensus 354 ~~DFlv~S~H--K~fG~~PtGv-G~LyVRk 380 (872)
-.|+-++||| |.++ + |. |++++++
T Consensus 169 ~~~~~~~Sf~~~K~l~--~-g~gG~~~~~~ 195 (375)
T PRK11706 169 IGHIGCFSFHETKNYT--A-GEGGALLIND 195 (375)
T ss_pred CcCEEEEeCCCCcccc--c-cCCeEEEECC
Confidence 2589999999 9886 3 44 4454443
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-11 Score=133.64 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=120.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
++||. .....++||++.|+.. .++++++++|+.+++.++ +++|++|++....-+.....+...++..|+++
T Consensus 55 ~~~pt----~~~Le~~lA~l~g~~~----~l~~ssG~~Ai~~al~al-~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v 125 (425)
T PRK06084 55 IMNPT----NDVLEQRVAALEGGVG----ALAVASGMAAITYAIQTI-AEAGDNIVSVAKLYGGTYNLLAHTLPRIGIET 125 (425)
T ss_pred CCCch----HHHHHHHHHHHhCCCc----eeEehhHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHhcccceeEE
Confidence 45665 3578899999999642 567888889999999887 47899988663311222333333334468887
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
.+++. .+.++++++|.. +|++|.+...+|.||.++|++. ++.|+++|+++++|.+++.|.. .
T Consensus 126 ~~~d~------~d~e~le~ai~~--------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~---~ 188 (425)
T PRK06084 126 RFAAH------DDIAALEALIDE--------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL---C 188 (425)
T ss_pred EEECC------CCHHHHHHHhcc--------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc---C
Confidence 76653 267888888753 5889999999999999999974 5778999999999999987752 2
Q ss_pred CCCCCCCcEEEEcccccCCCCC-CceEEEEEeC
Q 002866 349 GLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKK 380 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk 380 (872)
+.-.+++|+++.|++|++|+ | ..+|.+++..
T Consensus 189 ~p~~~gaDivv~S~tK~l~G-~g~~~gG~v~~~ 220 (425)
T PRK06084 189 RPFEHGADIVVHSLTKYIGG-HGTSIGGIVVDS 220 (425)
T ss_pred ChhhcCCCEEEECchhcccc-cccceeEEEEeC
Confidence 22256899999999999986 4 2356666643
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=133.45 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=123.0
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ | ++++ .|++|+|+|+|+.+++.++ .++|+.|++.. ..+... ...++..|+++..+|
T Consensus 73 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~-p~y~~~---~~~~~~~g~~~~~v~ 145 (391)
T PRK08361 73 PELREAIAEYYKKFYGVDVDVD--NVIVTAGAYEATYLAFESL-LEEGDEVIIPD-PAFVCY---VEDAKIAEAKPIRIP 145 (391)
T ss_pred HHHHHHHHHHHHHHhCCCCCcc--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcC-CCCccc---HHHHHHcCCEEEEEe
Confidence 46888888876 3 5565 5999999999999999887 57899887653 233333 344566899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeecccc--C--CCC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSL--G--PKD 344 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~--a--G~~ 344 (872)
++.. +..++.+++++.+.. +++++.+++.+|.||..+| ++ +++.|+++++++++|.+-. . +..
T Consensus 146 ~~~~~~~~~d~~~l~~~i~~--------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (391)
T PRK08361 146 LREENEFQPDPDELLELITK--------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAK 217 (391)
T ss_pred cCCccCCCCCHHHHHHhccc--------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCC
Confidence 8653 345889999887753 4789999999999999999 44 3566899999999998832 1 110
Q ss_pred CccCCCC--CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 345 MDSLGLS--LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 345 mipLDLs--~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
...+. ....++++.|++|.||. .| +|++++.++.+..+
T Consensus 218 --~~~~~~~~~~~~i~~~s~SK~~~~--~GlRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 218 --HYPMIKYAPDNTILANSFSKTFAM--TGWRLGFVIAPEQVIKDM 259 (391)
T ss_pred --CCCHhhcCCCCEEEEecCchhcCC--cHhhhhhhccCHHHHHHH
Confidence 11111 12467899999999994 48 89999877665544
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=124.06 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+++|+.++++++++ + .|++ .++++++..+...+ +++|+.|++. +..|.+.... ++..|+++..++.
T Consensus 84 ~~~~~l~~~la~~~~~~-~--~i~~-~~g~~~~~~~l~~~-~~~gd~V~~~-~~~~~~~~~~---~~~~g~~~~~~~~-- 152 (385)
T PRK05958 84 PAHEALEEELAEWFGAE-R--ALLF-SSGYAANLAVLTAL-AGKGDLIVSD-KLNHASLIDG---ARLSRARVRRYPH-- 152 (385)
T ss_pred HHHHHHHHHHHHHhCCC-c--EEEE-CcHHHHHHHHHHHh-CCCCCEEEEe-CccCHHHHHH---HHhcCCceEEeCC--
Confidence 56788999999999952 2 3554 45566655555555 5789998765 3456655433 3446888887753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCC------Ccc-C
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKD------MDS-L 348 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~------mip-L 348 (872)
.+.+++++++... .+.+.+|++.++.|.+|.+.|++. ++.|+++|+++++|.+|..+.- ... .
T Consensus 153 ----~d~~~l~~~i~~~-----~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~ 223 (385)
T PRK05958 153 ----NDVDALEALLAKW-----RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEA 223 (385)
T ss_pred ----CCHHHHHHHHHhc-----cCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhh
Confidence 2678888888642 124788889899999999999974 5678999999999999965420 000 1
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
++.....++++.|++|+|| +.| |+++.+++..+
T Consensus 224 ~~~~~~~~i~~~s~sK~~~--~~G-g~~~~~~~~~~ 256 (385)
T PRK05958 224 GLAGEPDVILVGTLGKALG--SSG-AAVLGSETLID 256 (385)
T ss_pred CCCCCCceEEEEechhhcc--cCC-cEEEcCHHHHH
Confidence 3333445689999999998 556 77766655443
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=129.92 Aligned_cols=207 Identities=13% Similarity=0.130 Sum_probs=142.2
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
+.++|+.+..+. +|+.+++++.+ .. ..+ ..|+.+ -..+.|+.+|+++|++++ +|++|+|+++
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~-------~~-~~~---~~y~~~----g~~~lr~~ia~~~~~~~~--~I~~~~G~~~ 85 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIAR-------AA-AGV---NRYPDM----GAVELRAALAEHLGVPPE--HVAVGCGSVA 85 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHH-------HH-Hhc---CcCCCC----cHHHHHHHHHHHhCcCHH--HEEECCCHHH
Confidence 367888776654 55677776432 11 121 234322 356899999999999876 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
++.+++..+ +++|++|++.. ++.......++..|+++..+|.+. +..++.+++++.+.. ++++|.+
T Consensus 86 ~l~~~~~~~-~~~gd~Vli~~----p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~~~~--------~~~~v~l 151 (352)
T PRK03321 86 LCQQLVQAT-AGPGDEVIFAW----RSFEAYPILVQVAGATPVQVPLTP-DHTHDLDAMAAAITD--------RTRLIFV 151 (352)
T ss_pred HHHHHHHHh-cCCCCEEEeCC----CCHHHHHHHHHHcCCEEEEccCCC-CCCCCHHHHHHhhcc--------CCCEEEE
Confidence 999998876 57899988652 122222234566899999999874 356788988887742 5789999
Q ss_pred eCccCcccchhcHHH-HHHHHH--CCcEEEeecccc--C--CCCCccCCCCCCCCc-EEEEcccccCCCCCCc--eEEEE
Q 002866 308 PVQSRVTGAKYSYQW-MALAQQ--NHWHVLLDAGSL--G--PKDMDSLGLSLFRPD-FIITSFYRVFGFDPTG--FGCLL 377 (872)
Q Consensus 308 p~vSNvTG~i~PLe~-I~~Are--~G~~VLVDAAQ~--a--G~~mipLDLs~l~~D-Flv~S~HK~fG~~PtG--vG~Ly 377 (872)
++.+|.||.++|++. .+.++. +++++++|.+.. . +....++..-....+ +++.|+=|.||. .| +|+++
T Consensus 152 ~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~--~GlRiG~~v 229 (352)
T PRK03321 152 CNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGL--AGLRVGYAV 229 (352)
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhh--HHHhhhhhc
Confidence 999999999999974 455654 589999999842 1 110001111111223 556699999984 36 89999
Q ss_pred EeCCCcccccC
Q 002866 378 IKKSVMGSLQN 388 (872)
Q Consensus 378 VRk~~i~~L~P 388 (872)
..+++++.+..
T Consensus 230 ~~~~~~~~~~~ 240 (352)
T PRK03321 230 GHPEVIAALRK 240 (352)
T ss_pred CCHHHHHHHHH
Confidence 98887777654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=144.04 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH-H---HHHHHhhCCCCCC----CeEEEe-cccCchhHHHHHHHHHHcC
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS-A---FKLLAESYPFHTN----KKLLTM-FDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATe-A---LnLVaeslpf~~G----d~ILT~-~DhEHnSVl~~~~~AkrkG 266 (872)
.+++.+..+-|++++|.+. +-+-+|++. | --++++.|.-..| +.++++ ..|.+ .. ..++..|
T Consensus 529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgt--nP---asa~~~G 599 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGT--NP---ASAAMAG 599 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCc--CH---HHHHHCC
Confidence 3788999999999999973 333344443 2 2224444421111 234444 33433 32 2356679
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc-HH-HHHHHHHCCcEEEeeccccCCCC
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS-YQ-WMALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P-Le-~I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
++|+.+|++. +|.+|.++|+++|..+ ..+|.+|++++.|| +|.+.| ++ ++++||++|..++||+||.++..
T Consensus 600 ~~Vv~V~~d~-~G~iDle~L~~~i~~~-----~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~ 672 (939)
T TIGR00461 600 MQVVPVNCDQ-DGNIDLVDLKNKAEQH-----GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQV 672 (939)
T ss_pred CEEEEeccCC-CCCcCHHHHHHHHhhc-----CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCC
Confidence 9999999974 6899999999999742 24699999999999 799988 97 55788999999999999977652
Q ss_pred CccCCCCCCCCcEEEEcccccCCCC----CCceEEEEEeCCCc
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFD----PTGFGCLLIKKSVM 383 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~----PtGvG~LyVRk~~i 383 (872)
...+..++++||+++|.||+||.| |.|+|++++|+.+.
T Consensus 673 -~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~ 714 (939)
T TIGR00461 673 -GLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI 714 (939)
T ss_pred -CCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence 344556899999999999987730 45669999998644
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=125.77 Aligned_cols=171 Identities=14% Similarity=0.189 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
.+.|+.||+++|++++ .|++|+|+++++++++.++ +++|+.|++. ++.+. .+...++..|+++..+|.+ +.
T Consensus 70 ~~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~-~p~y~---~~~~~~~~~g~~~~~~~~~--~~ 140 (367)
T PRK02731 70 FELKAALAEKFGVDPE--RIILGNGSDEILELLARAY-LGPGDEVIYS-EHGFA---VYPIAAQAVGAKPVEVPAK--DY 140 (367)
T ss_pred HHHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEe-cCCHH---HHHHHHHHcCCeEEEeccc--CC
Confidence 5799999999999875 5999999999999999888 5789998876 33332 2233456789999998874 35
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHH--CCcEEEeeccccCCC----CCccCCCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQ--NHWHVLLDAGSLGPK----DMDSLGLSL 352 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are--~G~~VLVDAAQ~aG~----~mipLDLs~ 352 (872)
.++.+++++.+.. ++++|.++..+|.||.++|++.+ +.++. +|+++++|.+..... ....+++-.
T Consensus 141 ~~~~~~l~~~~~~--------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 212 (367)
T PRK02731 141 GHDLDAMLAAVTP--------RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVA 212 (367)
T ss_pred CCCHHHHHHHhCC--------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHh
Confidence 6788999887742 57899999999999999999754 44444 489999999953211 001122111
Q ss_pred -CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 353 -FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 353 -l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..-.+++.|+-|.||.+...+|+++++++.++.+.
T Consensus 213 ~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~ 248 (367)
T PRK02731 213 KFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALN 248 (367)
T ss_pred hcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHH
Confidence 12346667889998841234699998887766554
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=129.17 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=117.1
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCch-hHHHHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQ-SVNWMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHn-SVl~~~~~AkrkGae 268 (872)
++||. ....++++|++.|+.. .+ ++++++.|+.++... +++||+|++... .+. ....+.+.+++.|++
T Consensus 47 ~~~p~----~~~Le~~lA~l~g~~~---~~-~~~sG~aai~~~~~~--l~~Gd~Viv~~~-~y~~~~~~~~~~~~~~G~~ 115 (377)
T PRK07671 47 TGNPT----RAALEELIAVLEGGHA---GF-AFGSGMAAITAVMML--FSSGDHVILTDD-VYGGTYRVMTKVLNRFGIE 115 (377)
T ss_pred CCChH----HHHHHHHHHHHhCCCc---eE-EeCCHHHHHHHHHHH--hCCCCEEEECCC-ccchHHHHHHHHHhcCCeE
Confidence 45664 4678999999999853 34 566667788776532 578999886643 233 333445566778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++.++. .+.++++++|. ++|++|.+...+|.||.+.|++. .+.|+++|+.+++|.++..+....+
T Consensus 116 v~~v~~------~d~~~l~~ai~--------~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p 181 (377)
T PRK07671 116 HTFVDT------SNLEEVEEAIR--------PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP 181 (377)
T ss_pred EEEECC------CCHHHHHHhcC--------CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh
Confidence 998763 25778887774 25899999999999999999984 5678999999999999876532123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc-e-EEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG-F-GCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG-v-G~LyVR 379 (872)
+ .+++|++++|++|++|+ |.+ + |+++++
T Consensus 182 ~---~~g~Divv~S~sK~l~G-~~~~~~G~~v~~ 211 (377)
T PRK07671 182 I---SLGADIVLHSATKYLGG-HSDVVAGLVVVN 211 (377)
T ss_pred h---hhCCeEEEecCcccccC-CccceeEEEEeC
Confidence 3 36899999999999998 664 3 445443
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=126.44 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....+++++++++++|.+ + .|++|+| ++|+.+++..+ +.+|+.|++.. ..|.++... ++-.|+++..++
T Consensus 77 ~~l~~~l~~~l~~~~g~~-~--~i~~~sG-~~a~~~a~~~~-~~~gd~vi~~~-~~~~~~~~~---~~~~g~~~~~~~-- 145 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTE-A--ALVFQSG-FNTNQGVLSAL-LRKGDIVLSDE-LNHASIIDG---LRLTKATKKIYK-- 145 (385)
T ss_pred cHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHh-CCCCCEEEEEc-cccHHHHHH---HHhcCCceEEeC--
Confidence 367788999999999974 2 4888877 56666666665 67899877653 335555432 233577766542
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCC-------cc
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDM-------DS 347 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~m-------ip 347 (872)
.++.+++++.|... ..+++++|+++++.|.||.+.|++. .+.|+++|+++++|.++..+.-. ..
T Consensus 146 ----~~d~~~l~~~l~~~----~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 146 ----HADMDDLDRVLREN----PSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred ----CCCHHHHHHHHHhh----ccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 35778888877642 2246899999999999999999974 56789999999999998654200 01
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+++. .++||++.|++|+||. .| |+++.+++.++.+
T Consensus 218 ~~~~-~~~~i~~~s~sK~~~~--~g-G~~~~~~~~~~~~ 252 (385)
T TIGR01825 218 FGLE-DKVDIQVGTLSKAIGV--VG-GYAAGHKELIEYL 252 (385)
T ss_pred cCCC-cCCcEEEEeccHHhhc--CC-CEEecCHHHHHHH
Confidence 3443 5789999999999985 34 6676666555544
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=136.78 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=134.7
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE 234 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae 234 (872)
++-..+++.|++++.- .|.-.|....+. ...|++-. ..++..-+.+++.++||++.. -|=--+++.|...|..
T Consensus 56 asEN~~s~~v~~a~~s--~l~nkyaeg~pg-~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a---nvqp~Sg~~An~~v~~ 129 (493)
T PRK13580 56 ASENYSSLAVQLAMGN--LLTDKYAEGTPG-HRFYAGCQNVDTVEWEAAEHAKELFGAEHA---YVQPHSGADANLVAFW 129 (493)
T ss_pred cccccCCHHHHHHhcc--cccccCcCCCCC-ccccCCCchHHHHHHHHHHHHHHHhCCCcc---cccCCCcHHHHHHHHH
Confidence 5556678888877421 121001000110 11233222 235667799999999999654 2334566677666666
Q ss_pred hCCC----CC--------------------------CCeEEEec-cc-CchhHHHHHHHHHHcCcEEEEEeccCCCCccC
Q 002866 235 SYPF----HT--------------------------NKKLLTMF-DY-ESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLC 282 (872)
Q Consensus 235 slpf----~~--------------------------Gd~ILT~~-Dh-EHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id 282 (872)
++-- .| ||.|+... ++ .|-+.-.... ......++...+++..++.+|
T Consensus 130 all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n-~~~~~~~~~~y~vd~~~g~iD 208 (493)
T PRK13580 130 AILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPN-ISGKMFHQRSYGVDPDTGLLD 208 (493)
T ss_pred HHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccc-hhhheeeeEecccCcccCccC
Confidence 5421 11 67776441 11 1111100001 111224556666776678899
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCC------CCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLS------LFRP 355 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs------~l~~ 355 (872)
.+++++++.. .+.+++++++||..+ ..|++. .++|+++|++++||+||.+|. +..++- ..++
T Consensus 209 ~d~l~~~~~~--------~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gl--igg~~~~~~~~~~~~~ 277 (493)
T PRK13580 209 YDEIAALARE--------FKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGL--VAGKVFTGDEDPVPHA 277 (493)
T ss_pred HHHHHHHHhh--------cCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhce--eccccchhhcCCCCCC
Confidence 9999998864 478999999999944 889974 567899999999999999997 555551 1379
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
||+++|+||+|++ |.| |+++++++.++.|
T Consensus 278 D~vtgT~hKaL~G-P~G-G~I~~~~~l~~~L 306 (493)
T PRK13580 278 DIVTTTTHKTLRG-PRG-GLVLAKKEYADAV 306 (493)
T ss_pred cEEEeCChhhccC-CCe-EEEEecHHHHHHH
Confidence 9999999999855 887 9999998877766
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=128.90 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=121.4
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.|++++ | ++++ +|++|+|+++|+.+++..+ +++|+.|++.. ..+... ...++..|+++..+|
T Consensus 64 ~~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~vl~~~-p~y~~~---~~~~~~~g~~~~~v~ 136 (382)
T PRK06108 64 PELREALARYVSRLHGVATPPE--RIAVTSSGVQALMLAAQAL-VGPGDEVVAVT-PLWPNL---VAAPKILGARVVCVP 136 (382)
T ss_pred HHHHHHHHHHHHHHhCCCcCcc--eEEEeCChHHHHHHHHHHh-cCCCCEEEEeC-CCccch---HHHHHHCCCEEEEee
Confidence 35666666654 7 5555 5999999999999999887 47899987652 223323 344567899999999
Q ss_pred ccCC--CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC----
Q 002866 274 FKWP--TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK---- 343 (872)
Q Consensus 274 vd~p--~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~---- 343 (872)
.+.. +..++.++|++.+.. ++++++++..+|.||..+|.+ ++..|+++|+++++|.+.....
T Consensus 137 ~~~~~~~~~~d~~~l~~~~~~--------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 137 LDFGGGGWTLDLDRLLAAITP--------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG 208 (382)
T ss_pred CCCCCCCccCCHHHHHHhcCc--------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC
Confidence 8642 235788888877742 478999999999999999874 3456789999999998843211
Q ss_pred CCcc--CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 344 DMDS--LGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mip--LDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
...+ +++.. ....+++.|++|.||.+...+|+++++++.++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~ 255 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLE 255 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHH
Confidence 0001 23322 23468899999998842234899998877665553
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=125.49 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=147.8
Q ss_pred hCCCCCCchhHHHHHhhcccCC-CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHH
Q 002866 126 MYPKYQSSDKIDQLRANEYLHL-SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIK 203 (872)
Q Consensus 126 ~~p~y~~t~~ID~lR~~EFP~L-~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeAR 203 (872)
..+.|.....++...+ ++... ...++|+.+-... .|+.+++++.+ . ..+ ..|..+. ..+.|
T Consensus 30 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~--------~-~~~---~~Yp~~~----~~~lr 92 (380)
T PLN03026 30 QLAPYQPILPFEVLSA-QLGRKPEDIVKLDANENPYGPPPEVLEALGN--------M-KFP---YVYPDPE----SRRLR 92 (380)
T ss_pred cCCCCCCCCChHHHHH-HhCCCccceEEccCCCCCCCCCHHHHHHHHh--------h-Hhh---ccCCCCC----HHHHH
Confidence 3333433334554443 23222 2478999875443 44556665321 1 111 1354443 35799
Q ss_pred HHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCH
Q 002866 204 TRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCS 283 (872)
Q Consensus 204 erIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~ 283 (872)
++||+++|++++ .|++|+|+++++.++...+ .++|++|++..- ....+...++..|+++..+|.+. +..++.
T Consensus 93 ~~ia~~~~~~~~--~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P----~y~~y~~~~~~~g~~~~~v~~~~-~~~~d~ 164 (380)
T PLN03026 93 AALAEDSGLESE--NILVGCGADELIDLLMRCV-LDPGDKIIDCPP----TFGMYVFDAAVNGAEVIKVPRTP-DFSLDV 164 (380)
T ss_pred HHHHHHhCcChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCC----ChHHHHHHHHHcCCEEEEeecCC-CCCcCH
Confidence 999999999876 4999999999999999887 478999876521 22233445667899999998864 456888
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHH-HHHCCcEEEeecccc--CCCCCccC-CCCCCCCcEEE
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMAL-AQQNHWHVLLDAGSL--GPKDMDSL-GLSLFRPDFII 359 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~-Are~G~~VLVDAAQ~--aG~~mipL-DLs~l~~DFlv 359 (872)
++|++++.. .+++++.++..+|.||+.+|.+.+.. ++. .+++++|.+-. .... ..+ .+...+-.+++
T Consensus 165 ~~l~~~~~~-------~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-~~~vi~DeaY~~~~~~~-~~~~~~~~~~~viv~ 235 (380)
T PLN03026 165 PRIVEAVET-------HKPKLLFLTSPNNPDGSIISDDDLLKILEL-PILVVLDEAYIEFSTQE-SRMKWVKKYDNLIVL 235 (380)
T ss_pred HHHHHHHhc-------cCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-CCEEEEECcchhhcCCc-chHHHHHhCCCEEEE
Confidence 999887732 25889999999999999999986554 443 48999999942 2110 011 12234456899
Q ss_pred EcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 360 TSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
.|+-|.|| ..| +|.++..++.++.+
T Consensus 236 ~SfSK~~g--laGlRiGy~~~~~~~i~~l 262 (380)
T PLN03026 236 RTFSKRAG--LAGLRVGYGAFPLSIIEYL 262 (380)
T ss_pred ecchHhhc--CccccceeeecCHHHHHHH
Confidence 99999998 346 67777655554443
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=126.91 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=114.5
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.|+||. ..+.+++||++.|+. .++.|+|+++|+.++... +++||+||+....-...+..+.....+.+++
T Consensus 50 R~~~p~----~~~le~~lA~leg~~----~~v~~~sG~aAi~~~l~~--l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~ 119 (364)
T PRK07269 50 RTKNPT----RAKLEETLAAIESAD----YALATSSGMSAIVLAFSV--FPVGSKVVAVRDLYGGSFRWFNQQEKEGRFH 119 (364)
T ss_pred CCCCcc----HHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHH--hCCCCEEEEecCCcCchHHHHHHHHhcCcEE
Confidence 467876 357888999999863 388899999999988853 5789998866432222333333322322443
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.+ ..+.++++++|.. +|++|.+...+|.||...|++ +++.||++|+.+++|.+.+.+....|
T Consensus 120 ~~~--------~~d~~~l~~~i~~--------~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p 183 (364)
T PRK07269 120 FTY--------ANTEEELIAAIEE--------DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP 183 (364)
T ss_pred EEe--------cCCHHHHHHhcCc--------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 332 1367888877753 589999999999999999998 56788999999999999766542123
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVR 379 (872)
+ .+++|++++|++|++++ +.. .|+++.+
T Consensus 184 l---~~gaDivv~S~tK~l~g-~~d~~gG~v~~~ 213 (364)
T PRK07269 184 I---ELGADIVLHSATKYLSG-HNDVLAGVVVTN 213 (364)
T ss_pred h---hhCCcEEEecCceeccC-CCcccceEEEeC
Confidence 3 46899999999999986 444 3444443
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=128.91 Aligned_cols=171 Identities=14% Similarity=0.167 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcC-CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 200 HDIKTRIMDHLN-IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 200 eeARerIA~lLg-A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
.+.|+.||++++ ++++ .|++|+|+++|+.+++.++ ..+||+|++.. ++.......++..|++++.+|++..+
T Consensus 65 ~~lr~~ia~~~~~~~~~--~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~----P~y~~~~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 65 PEFKEAVASLYQNVKPE--NILQTNGATGANFLVLYAL-VEPGDHVISVY----PTYQQLYDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred HHHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcC----CCchhHHHHHHHcCCEEEEEeccccc
Confidence 479999999885 6665 5999999999999999988 57899988753 22333445667789999999987533
Q ss_pred -CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeecccc-CCCCCccCCCCC
Q 002866 279 -LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSL-GPKDMDSLGLSL 352 (872)
Q Consensus 279 -g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~ 352 (872)
..++.+++++++. ++++++.+++.+|.||.++| ++ +++.|+++|+++++|.+.. ...+.....+..
T Consensus 138 ~~~~d~~~l~~~~~--------~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~ 209 (373)
T PRK07324 138 GWLPDLDELRRLVR--------PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIAD 209 (373)
T ss_pred CCCCCHHHHHHhCC--------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhh
Confidence 3468888877664 25889999999999999999 54 4567899999999999832 111000111111
Q ss_pred -CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 353 -FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 353 -l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.+-..++.|+-|.||. .| +|.++..+++++.+.
T Consensus 210 ~~~~~I~~~s~SK~~~~--~G~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 210 LYEKGISTNSMSKTYSL--PGIRVGWIAANEEVIDILR 245 (373)
T ss_pred ccCCEEEEecchhhcCC--ccceeEEEecCHHHHHHHH
Confidence 1224677899999984 36 698888766665554
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=132.30 Aligned_cols=165 Identities=10% Similarity=0.044 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-HH-HHHcCcEEEEEeccC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-QS-AKEKGAKVYSAWFKW 276 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-~~-AkrkGaeV~~Vpvd~ 276 (872)
.++.++++|+++|+.. +++|+|+++|+.+++.++ .++||+|++... .+....... .. ++..|++++.++..
T Consensus 78 ~~~LE~~lA~l~g~~~----~l~~~sG~~Ai~~al~al-~~~GD~Vl~~~~-~Y~~~~~~~~~~~~~~~G~~~~~~d~~- 150 (418)
T PLN02242 78 VLNLGRQMAALEGTEA----AYCTASGMSAISSVLLQL-CSSGGHVVASNT-LYGGTHALLAHFLPRKCNITTTFVDIT- 150 (418)
T ss_pred HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHH-hCCCCEEEEcCC-cHHHHHHHHHHhhhhccCceEEEcCCC-
Confidence 5678899999999853 678999999999998887 579999886532 222232221 12 23368888766432
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++++++|.. .+|++|.+...+|.||.+.|++ +++.||++|+++++|.++. +. .++...+++
T Consensus 151 -----d~e~l~~~i~~-------~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~---~~~~~~~g~ 214 (418)
T PLN02242 151 -----DLEAVKKAVVP-------GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PM---VLSPARLGA 214 (418)
T ss_pred -----CHHHHHHhcCc-------CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-cc---CCCHHHcCC
Confidence 67888877742 1489999999999999999997 4567899999999999984 32 345455689
Q ss_pred cEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
|+++.|+.|+|++ +.. .|+++.+++.+..+.
T Consensus 215 divv~S~SK~l~g-~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 215 DVVVHSISKFISG-GADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred cEEEEeCccccCC-CCCceEEEEEcCHHHHHHHH
Confidence 9999999999985 432 477776666655543
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=127.14 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=123.0
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
+.|+.|++++ | +++++ +|++|+|+++|+.+++..+ .++|+.|++.. ..+. .+...++..|++++.+++
T Consensus 67 ~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~-p~y~---~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 67 ELRQAVAAHYARFQGLDLDPET-EVMVTSGATEALAAALLAL-VEPGDEVVLFQ-PLYD---AYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCcc-cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeC-CCch---hhHHHHHHcCCEEEEEec
Confidence 5677777665 4 44441 5999999999999988887 46899887653 2222 334456778999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCCCc
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKDMD 346 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~mi 346 (872)
+..+..++.+++++.+.. +++++.+++.+|.||+++|.+ +++.|+++++++++|.+.. .+....
T Consensus 141 ~~~~~~~~~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 212 (387)
T PRK08912 141 EPPHWRLPRAALAAAFSP--------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHI 212 (387)
T ss_pred CcccCcCCHHHHHHHhCc--------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCc
Confidence 754567889999887742 478999999999999999964 3466799999999999852 111001
Q ss_pred c-CCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 347 S-LGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 p-LDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+ ..+.. ...++++.|+.|.||. .| +|++++.++.++.+.
T Consensus 213 ~~~~~~~~~~~~i~~~S~SK~~g~--~GlRiG~~~~~~~~~~~l~ 255 (387)
T PRK08912 213 PLMTLPGMRERTVKIGSAGKIFSL--TGWKVGFVCAAPPLLRVLA 255 (387)
T ss_pred ChhhCCCccCceEEEeechhhccC--cCceeEEEecCHHHHHHHH
Confidence 1 11211 2457999999999993 47 899998777665543
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=123.03 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=150.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
+-.|+-.++..++++-|-..|.... .+..+|.-++|.|+...+-.+ ..+||++++... - .=-..+...++|.|++|
T Consensus 43 h~sPe~~qIm~~v~egikyVFkT~n-~~tf~isgsGh~g~E~al~N~-lePgd~vLv~~~-G-~wg~ra~D~~~r~ga~V 118 (385)
T KOG2862|consen 43 HMSPEFVQIMDEVLEGIKYVFKTAN-AQTFVISGSGHSGWEAALVNL-LEPGDNVLVVST-G-TWGQRAADCARRYGAEV 118 (385)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCC-CceEEEecCCcchHHHHHHhh-cCCCCeEEEEEe-c-hHHHHHHHHHHhhCcee
Confidence 3345556888999999999998764 368999999999988777665 358999875421 0 00124567889999999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HH-HHHHHCCcEEEeeccccCCCCCcc
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WM-ALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I-~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
..++.++ +..+..+++.+.|.++ +.++|.++|.-.-||+.+|+. .. .++|+++++++||+++++|. .+
T Consensus 119 ~~v~~~~-G~~~~le~i~~~lsqh-------~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlgg--t~ 188 (385)
T KOG2862|consen 119 DVVEADI-GQAVPLEEITEKLSQH-------KPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGG--TE 188 (385)
T ss_pred eEEecCc-ccCccHHHHHHHHHhc-------CCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCC--cc
Confidence 9999988 4568999999999875 478999999999999999964 44 45699999999999988886 48
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|-+.++++|+.-....|.+|+ |.|++.+-..+.....++..
T Consensus 189 F~mDewgVDvaytgSQKaL~a-P~GLsiisfS~ka~~~~~~r 229 (385)
T KOG2862|consen 189 FEMDEWGVDVAYTGSQKALGA-PAGLSIISFSDKALEAIRDR 229 (385)
T ss_pred ceehhhcccEEEecchhhcCC-CCCcceeecCHHHHHHHhhc
Confidence 999999999999999999999 99999988888877777654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=125.39 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=145.9
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
+.++||.+.... .|+.+++++.+ .+... ....|..+. ..+.|+.||+++|.++++ .|++|+|+++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~Y~~~~----~~~lr~~ia~~~~~~~~~-~I~~t~G~~~ 92 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGE-------RLAEV--ALNRYPDPR----AAALKAALRAAMGVPAGA-DVLLGNGSDE 92 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHH-------Hhhcc--ccccCCCCC----HHHHHHHHHHHhCcCCCC-cEEEcCCHHH
Confidence 478998886653 56677776432 11111 012343332 367999999999987542 6999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
++.+++..+. .+|+.|++.. ++...+...++..|++++.+|++. +..++.++|++.+.. .+++++.+
T Consensus 93 ~i~~~~~~~~-~~gd~vlv~~----P~y~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~~~~-------~~~~~v~l 159 (356)
T PRK04870 93 LIQLLALACA-KPGATVLAPE----PGFVMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAAIAE-------HRPALVFL 159 (356)
T ss_pred HHHHHHHHhc-CCCCEEEECC----CCHHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhhc-------CCCCEEEE
Confidence 9999998773 7899988652 233345666788999999999874 467899999988853 25789999
Q ss_pred eCccCcccchhcHHHHH-HHHHCCcEEEeeccc--cCCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCC
Q 002866 308 PVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGS--LGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSV 382 (872)
Q Consensus 308 p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ--~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~ 382 (872)
++-+|.||..+|.+.+. .++..+.++++|.+. +.+....+ .+....--+++.|+.| ||. .| +|+++..++.
T Consensus 160 ~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~vi~~~S~SK-~~~--~GlRiG~~i~~~~~ 235 (356)
T PRK04870 160 AYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLP-RLARFPNLLVMRTVSK-LGL--AGLRLGYLAGHPAW 235 (356)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHH-HHhhCCCEEEEecchh-hhh--HHHhhhhhhCCHHH
Confidence 99999999999997554 344447789999883 22211011 1223334588999999 774 47 9999988877
Q ss_pred cccccC
Q 002866 383 MGSLQN 388 (872)
Q Consensus 383 i~~L~P 388 (872)
++.+..
T Consensus 236 i~~~~~ 241 (356)
T PRK04870 236 IAELDK 241 (356)
T ss_pred HHHHHH
Confidence 766654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=128.29 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=115.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. ++.=++++++.|+. | .+.++++|.|+.+++.++ +++||+||+...+..+....+...+.+.|++
T Consensus 60 r~~~P~~----~~lE~~la~leg~~---~-av~~sSG~aAi~~al~al-l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~ 130 (384)
T PRK06434 60 RWGNPTV----QAFEEKYAVLENAE---H-ALSFSSGMGAITSAILSL-IKKGKRILSISDLYGQTFYFFNKVLKTLGIH 130 (384)
T ss_pred CCCChhH----HHHHHHHHHHhCCC---c-EEEeCCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence 4577753 33445699999984 2 566777789999999887 7899998876543334444455667788999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.+++++.. +.+. +.. .+++||.+.+.+|.|+.+.|++ +.+.||+++ ++||++++.+....|
T Consensus 131 v~fvd~~~~------~~~~--l~~-------~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~p 193 (384)
T PRK06434 131 VDYIDTDRL------NSLD--FDP-------SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNP 193 (384)
T ss_pred EEEECCCCh------hhee--ecC-------CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCc
Confidence 999987531 1121 211 2589999999999999999998 556789988 577999876652224
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVR 379 (872)
+ .+++|++++|.||++++ |.+ -|++..+
T Consensus 194 l---~~gaDivv~S~tK~i~G-~~d~~gG~vv~~ 223 (384)
T PRK06434 194 L---DLGADVVIHSATKYISG-HSDVVMGVAGTN 223 (384)
T ss_pred h---hcCCCEEEeecccccCC-CCCceEEEEecC
Confidence 4 36899999999999987 554 3444443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-10 Score=125.13 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=141.7
Q ss_pred HHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC
Q 002866 136 IDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI 212 (872)
Q Consensus 136 ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA 212 (872)
++++++.-.|.... .-|+.|-.+++.+..++-.+.. ..+..|+. ..-..|....+..++=+-+++++|.
T Consensus 23 l~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~------~~~n~n~~--~~~~~P~~~~~E~~vi~~l~~l~g~ 94 (373)
T PF00282_consen 23 LKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLA------SALNQNGF--TWEASPAATEIEREVIRWLADLFGL 94 (373)
T ss_dssp HHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHH------HHHT-BTT--STTTSHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHH------hhhccccc--ccccccccccchHHHHHHHHHHhCC
Confidence 34444433344332 3566666666666665543211 12222221 1112344557778888999999999
Q ss_pred CCC-----CCcEEEeCCHHHHHHHHHhhC-----C------CC-CCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 213 PEN-----EYGLVFTVSRGSAFKLLAESY-----P------FH-TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 213 ~~d-----EY~VVFTsnATeALnLVaesl-----p------f~-~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
+.. +..=+||+|+|+|+-...... + .. .++.++...+.-|-|+. +.|.-.|+.++.||++
T Consensus 95 ~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~---Kaa~~lGlg~~~I~~~ 171 (373)
T PF00282_consen 95 PESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIE---KAARILGLGVRKIPTD 171 (373)
T ss_dssp SGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHH---HHHHHTTSEEEEE-BB
T ss_pred cccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHH---HhcceeeeEEEEecCC
Confidence 832 235789999999965422111 0 00 12234444454566664 5566689999999999
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC----CCccCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK----DMDSLGL 350 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~----~mipLDL 350 (872)
. +++++.++|+++|.+... .+...-+|+.++-+..+|++=|++. ...|+++++++|||||-.+.. ..-+++.
T Consensus 172 ~-~~~md~~~L~~~l~~~~~--~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~ 248 (373)
T PF00282_consen 172 E-DGRMDIEALEKALEKDIA--NGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLF 248 (373)
T ss_dssp T-TSSB-HHHHHHHHHHHHH--TTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGT
T ss_pred c-chhhhHHHhhhhhccccc--ccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccccccccccccccc
Confidence 7 689999999999876432 1111237888889999999999985 567899999999999854411 0012222
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
.--++|-+++++|||++. |.++|++++|+..
T Consensus 249 gi~~adSit~d~HK~l~~-P~~~~~~l~r~~~ 279 (373)
T PF00282_consen 249 GIERADSITIDPHKWLGV-PYGCGVLLVRDKS 279 (373)
T ss_dssp TGGGESEEEEETTTTTS--SSS-EEEEESSGG
T ss_pred ccccccccccchhhhhcC-CccceeEEeeccc
Confidence 234689999999999998 9999999999964
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=127.68 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
....|+.||+++ +++++ .|++|+|+|+|+.+++.++ .++|+.|++. +..|.. +...++..|+++..+
T Consensus 70 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~-~p~y~~---~~~~~~~~g~~~~~~ 142 (393)
T PRK05764 70 IPELREAIAAKLKRDNGLDYDPS--QVIVTTGAKQALYNAFMAL-LDPGDEVIIP-APYWVS---YPEMVKLAGGVPVFV 142 (393)
T ss_pred hHHHHHHHHHHHHHHhCCCCCHH--HEEEeCCcHHHHHHHHHHh-cCCCCEEEec-CCCCcc---hHHHHHHcCCEEEEE
Confidence 457888888887 35554 5999999999999998887 5788988765 333443 334456679999999
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CC
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
+.+.. +..++.+++++++.. +++++++++.+|.||.++|.+ +++.|+++|+++++|.+... +.
T Consensus 143 ~~~~~~~~~~d~~~l~~~l~~--------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 214 (393)
T PRK05764 143 PTGEENGFKLTVEQLEAAITP--------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA 214 (393)
T ss_pred ecCcccCCcCCHHHHHHhhCc--------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC
Confidence 98732 346788999887742 478999999999999999854 35678999999999987421 11
Q ss_pred C---CccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 344 D---MDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~---mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
. ...+.....+.++++.|+-|.||. .| +|+++..++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~--~G~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 215 EFTSIASLSPELRDRTITVNGFSKAYAM--TGWRLGYAAGPKELIKAMS 261 (393)
T ss_pred CcccHHHcCCCCcCCEEEEecCcccccC--ccceeEEEecCHHHHHHHH
Confidence 0 001112224568899999999984 47 799988777766554
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=129.81 Aligned_cols=177 Identities=17% Similarity=0.122 Sum_probs=129.7
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC--C---C---CC----C-eEEEecccCchhHHHHH
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP--F---H---TN----K-KLLTMFDYESQSVNWMA 259 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp--f---~---~G----d-~ILT~~DhEHnSVl~~~ 259 (872)
|.+..+.+++=.-+++++|++ ++..=+||+|+|+|+.+...... | . .+ . +||++.. -|-| +.
T Consensus 97 p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~-aH~s---~~ 171 (460)
T COG0076 97 PAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSET-AHFS---FE 171 (460)
T ss_pred hhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCc-chhH---HH
Confidence 445567777888899999997 45678999999999775433221 1 1 11 1 4666644 3554 45
Q ss_pred HHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeecc
Q 002866 260 QSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAG 338 (872)
Q Consensus 260 ~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAA 338 (872)
+.+.--|++++.++.+..+.++|.++|+++|.+++- .+.|+-++-...+|.+=||+.| ..|+++++++|||||
T Consensus 172 Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~------~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA 245 (460)
T COG0076 172 KAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTI------GGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAA 245 (460)
T ss_pred HHHHHhCCCceeEEeccCccccCHHHHHHHHHhhcc------CceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEcc
Confidence 667778999999998765689999999999986421 1136667778899999999865 567999999999999
Q ss_pred ccCCCC--C---ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 339 SLGPKD--M---DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 339 Q~aG~~--m---ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
-.+..- + ..+|...-++|-+++++|||+.. |.|+|++++|+.
T Consensus 246 ~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~ 292 (460)
T COG0076 246 FGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDE 292 (460)
T ss_pred ccceeecccCccchhhcCCCCceEEEECcccccCC-CCCceEEEEECH
Confidence 433220 0 11244444899999999999887 999999999998
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=125.31 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=117.9
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCC---CeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTN---KKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~G---d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
..|+.|++++ | ++++ ..|++|+|+++|+.+++..+. .+| |.|++.. . +.......++..|++++.
T Consensus 40 ~lr~aia~~~~~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~-p---~y~~~~~~~~~~g~~~~~ 113 (350)
T TIGR03537 40 ALREAISGWFERRFGVKLDPD-AQVLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGT-P---GYPVYERGALFAGGEPTA 113 (350)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEcCChHHHHHHHHHHHc-CCCCCCceEEEcC-C---CCcchHHHHHhcCCEEEE
Confidence 5677777765 6 4443 159999999999999988774 455 5777652 1 222334456778999999
Q ss_pred EeccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeecccc---CCC
Q 002866 272 AWFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSL---GPK 343 (872)
Q Consensus 272 Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~---aG~ 343 (872)
++++. .+..++.+++++++.. +++++.++.-+|.||..+|. + +++.|+++|+++++|.+.. .+.
T Consensus 114 v~~~~~~~~~~d~~~l~~~~~~--------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 185 (350)
T TIGR03537 114 VKLKKEDGFLLRLEKVEKSILE--------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE 185 (350)
T ss_pred cccCcccCCccCHHHHHHhhhh--------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC
Confidence 99863 3345799999887753 47899999999999999995 3 4567899999999999963 222
Q ss_pred CCccCCCCCCCC--cEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 344 DMDSLGLSLFRP--DFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mipLDLs~l~~--DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.+..+..... .+++.|+.|.||. .| +|+++..+.+++.+.
T Consensus 186 --~~~~~~~~~~~~~i~~~s~SK~~g~--~GlRiG~~~~~~~~~~~~~ 229 (350)
T TIGR03537 186 --PPHSALEVGIENVLAFHSLSKRSGM--TGYRSGFVAGDEKLISFLR 229 (350)
T ss_pred --CCCchhhcCcCCEEEEeecccccCC--ccccceeeecCHHHHHHHH
Confidence 1222222222 3777799999984 36 787776555554443
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=126.70 Aligned_cols=173 Identities=13% Similarity=0.190 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcC----C--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHLN----I--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lLg----A--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.|+++++ + +++ .+|++|+|+|+|+++++..+ ..+|+.|++..- .+.. +...++..|+++..++
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p-~y~~---~~~~~~~~g~~~~~~~ 143 (391)
T PRK07309 70 LELRQAAADFVKEKYNLDYAPE-NEILVTIGATEALSASLTAI-LEPGDKVLLPAP-AYPG---YEPIVNLVGAEIVEID 143 (391)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCC-CCcc---hHHHHHHcCCEEEEEe
Confidence 457777777664 3 222 26999999999999999987 578999876532 2222 3344566899999999
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDM 345 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~m 345 (872)
.+..+..++.++|++++... ..+++++.+++.+|.||+.++.+ +++.|+++++++++|.+..- +.
T Consensus 144 ~~~~~~~~d~~~l~~~~~~~-----~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~-- 216 (391)
T PRK07309 144 TTENDFVLTPEMLEKAILEQ-----GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE-- 216 (391)
T ss_pred cCCcCCcCCHHHHHHHhhcc-----CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--
Confidence 86544568899999888642 22578999988899999999864 34567899999999999532 21
Q ss_pred ccCCCCCCCCc--EEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPD--FIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~D--Flv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...++..+..| +++.|+.|.||. | | +|+++..++.++.+.
T Consensus 217 ~~~~~~~~~~~~~i~~~S~SK~~g~-~-GlRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 217 PHVSIAEYLPDQTILINGLSKSHAM-T-GWRIGLIFAPAEFTAQLI 260 (391)
T ss_pred CCCCHHHhccCCEEEEecChhhccC-c-cceeEEEEeCHHHHHHHH
Confidence 11222222233 889999999985 2 6 888998877765543
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=124.60 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+++++.+++++|++ + .|++|+| ++|+..+..++ +.+||+|++. +..|.+.... ++..|+++..++.
T Consensus 87 ~l~~~l~~~la~~~g~~-~--~i~~tsG-~~a~~~~~~~l-~~~gd~vi~~-~~~~~~~~~~---~~~~~~~~~~~~~-- 155 (397)
T PRK06939 87 DLHKELEEKLAKFLGTE-D--AILYSSC-FDANGGLFETL-LGKEDAIISD-ALNHASIIDG---VRLCKAKRYRYAN-- 155 (397)
T ss_pred HHHHHHHHHHHHHhCCC-c--EEEEcCh-HHHHHHHHHHh-CCCCCEEEEE-hhhhHHHHHH---HHhcCCceEEeCC--
Confidence 56788999999999975 3 4888888 77877777766 6789998876 3345555433 3345777765542
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc-------cC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD-------SL 348 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi-------pL 348 (872)
.+.+++++.+..... ...+++++++.++.|.+|...|++ ++..|+++|+++++|.++..|.... ..
T Consensus 156 ----~d~~~l~~~i~~~~~--~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~ 229 (397)
T PRK06939 156 ----NDMADLEAQLKEAKE--AGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHF 229 (397)
T ss_pred ----CCHHHHHHHHHhhhc--cCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHc
Confidence 367888887764210 112688999999999999999997 5667899999999999986442000 01
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++. -++|++++|++|+|++ +. .|+++.+++.++.+.
T Consensus 230 ~~~-~~~~i~~~S~sK~~~g-~r-~G~v~~~~~~~~~l~ 265 (397)
T PRK06939 230 GVM-DRVDIITGTLGKALGG-AS-GGYTAGRKEVIDWLR 265 (397)
T ss_pred CCC-CCCcEEEEECHHHhCc-cC-ceEEEeCHHHHHHHH
Confidence 221 2579999999999965 65 499988877766654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=121.09 Aligned_cols=201 Identities=12% Similarity=0.093 Sum_probs=131.4
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc-----CCCCCCCcEEEe
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL-----NIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL-----gA~~dEY~VVFT 222 (872)
+.++||.+.... .|+.+.+++.+ .... ...|+.+ .-..+.|+.|++++ +++++ .|++|
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~--------~~~~---~~~Y~~~---~g~~~lr~~ia~~~~~~~~~~~~~--~i~~t 94 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKN--------YDEE---VLAYSHS---QGIPELREAFAKYYKKWGIDVEPD--EILIT 94 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHH--------HhcC---CcCcCCC---CCCHHHHHHHHHHHHHhCCCCCcc--eEEEc
Confidence 478999988763 56666665321 1111 1124332 12457899999987 46665 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCc--cCHHHHHHHHhhhhccCCCC
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLK--LCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~--Id~edLe~~I~~~~rr~~~~ 300 (872)
+|+|+|+++++..+ +++|++|++...+ +... ...++..|+++..++.+..++. .+.++|++++..
T Consensus 95 ~G~~~al~~~~~~l-~~~gd~Vl~~~p~-y~~~---~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~-------- 161 (397)
T PRK07568 95 NGGSEAILFAMMAI-CDPGDEILVPEPF-YANY---NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-------- 161 (397)
T ss_pred CChHHHHHHHHHHh-cCCCCEEEEecCC-CccH---HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc--------
Confidence 99999999999887 6789998765322 2222 2335667999999998632332 245777776642
Q ss_pred CceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-C---CCCCc-cCCCCC-CCCcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-G---PKDMD-SLGLSL-FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-a---G~~mi-pLDLs~-l~~DFlv~S~HK~fG~~P 370 (872)
++++|.+++.+|.||.++|.+ +++.|+++++++++|.+-. . +.... .+.+.. ..--+++.|+.|.||.+-
T Consensus 162 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G 241 (397)
T PRK07568 162 KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACG 241 (397)
T ss_pred cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCC
Confidence 588999999999999999863 3467799999999999842 1 21000 122221 112277889999988412
Q ss_pred CceEEEEE
Q 002866 371 TGFGCLLI 378 (872)
Q Consensus 371 tGvG~LyV 378 (872)
..+|+++.
T Consensus 242 ~R~G~~~~ 249 (397)
T PRK07568 242 ARIGCLIS 249 (397)
T ss_pred cceEEEec
Confidence 34676665
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=128.10 Aligned_cols=152 Identities=11% Similarity=-0.024 Sum_probs=114.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGae 268 (872)
.+||. .+..+++|+.+=+.. . .++|+++++|++.++.++ +++||+||+... .+..... +.+.+++.|++
T Consensus 61 ~gnPt----~~~Le~~la~le~~~-~---~v~~sSG~aAi~~~l~al-l~~GD~Vlv~~~-~Y~~~~~l~~~~l~~~Gi~ 130 (395)
T PRK05967 61 RGTPT----TDALCKAIDALEGSA-G---TILVPSGLAAVTVPFLGF-LSPGDHALIVDS-VYYPTRHFCDTMLKRLGVE 130 (395)
T ss_pred CCChH----HHHHHHHHHHHhCCC-C---EEEECcHHHHHHHHHHHh-cCCCCEEEEccC-CcHHHHHHHHHHHHhcCeE
Confidence 46664 356778888776643 2 456666899999999887 789999887643 2333332 33567889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
|.+++.+ +.+.++++|. ++|+||.+...+|.+|.+.||+ +++.||++|+++++|.++..|. .
T Consensus 131 v~~vd~~------~~e~l~~al~--------~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~---~ 193 (395)
T PRK05967 131 VEYYDPE------IGAGIAKLMR--------PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPL---Y 193 (395)
T ss_pred EEEeCCC------CHHHHHHhcC--------cCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCce---e
Confidence 9987543 2366777774 3599999999999999999998 5678899999999999988774 2
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
+..-++++|+++-|.-|++++
T Consensus 194 ~~pl~~GaDivv~S~tKy~~G 214 (395)
T PRK05967 194 FRPLDFGVDISIHAATKYPSG 214 (395)
T ss_pred cChhHcCCCEEEEecccccCC
Confidence 344457999999999998663
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-10 Score=127.90 Aligned_cols=174 Identities=14% Similarity=0.212 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+++++||+++|.+ + .|+|++|....+ .++.++ +++||.|++. +..|+++.. .++..|++++.++.+
T Consensus 146 ~~~~ele~~lA~~~g~~-~--ai~~~~G~~an~-~~i~al-~~~Gd~Vi~d-~~~h~s~~~---~~~~~Ga~v~~~~~~- 215 (489)
T PLN02483 146 KLHRELEELVARFVGKP-A--AIVFGMGYATNS-TIIPAL-IGKGGLIISD-SLNHNSIVN---GARGSGATIRVFQHN- 215 (489)
T ss_pred HHHHHHHHHHHHHhCCC-c--EEEECCHHHHHH-HHHHHh-CCCCCEEEEc-chhhHHHHH---HHHHcCCeEEEEeCC-
Confidence 56788999999999963 2 588888744433 445554 6889998865 445776643 456689999988743
Q ss_pred CCCccCHHHHHHHHhhhh----ccCCCCC-ceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC------
Q 002866 277 PTLKLCSTDLRKQISSKK----RRKKDSA-AGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD------ 344 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~----rr~~~~~-T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~------ 344 (872)
+.++++++|.... .+...+. +.+|++.++.|++|.+.+++ +++.|+++|+++++|.++..|..
T Consensus 216 -----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g 290 (489)
T PLN02483 216 -----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG 290 (489)
T ss_pred -----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCc
Confidence 4567776665321 0000112 24888888999999999997 56788999999999999975420
Q ss_pred -CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 345 -MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 345 -mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
...+++...++|+++.|++|.|| +.| |+++.++++++.|+.
T Consensus 291 ~~~~~~v~~~~~dI~~~SfSKs~g--~~G-G~i~~~~~li~~l~~ 332 (489)
T PLN02483 291 VCELLGVDPADVDIMMGTFTKSFG--SCG-GYIAGSKELIQYLKR 332 (489)
T ss_pred hHHhcCCCcccCcEEEEecchhcc--cCc-eEEEcCHHHHHHHHH
Confidence 00134433468999999999999 567 888888887777653
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=125.44 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+...|+.||++++ ++++ +|++|+|+|+|++++..++ ..+|+.|++..- . ...+...++..|++++.+
T Consensus 75 ~~~lr~~ia~~l~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p-~---~~~~~~~~~~~g~~v~~v 147 (394)
T PRK06836 75 YPEVREAIAESLNRRFGTPLTAD--HIVMTCGAAGALNVALKAI-LNPGDEVIVFAP-Y---FVEYRFYVDNHGGKLVVV 147 (394)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcC--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCC-C---CccHHHHHHHcCCEEEEE
Confidence 4578888888885 4555 5999999999999999887 478998876531 2 222344567789999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHH------CCcEEEeecccc-C
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQ------NHWHVLLDAGSL-G 341 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are------~G~~VLVDAAQ~-a 341 (872)
+.+..++.++.+++++++.. ++++|.+++.+|.||..+|.+. ++.|++ +++++++|.+-. .
T Consensus 148 ~~~~~~~~~d~~~l~~~~~~--------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~ 219 (394)
T PRK06836 148 PTDTDTFQPDLDALEAAITP--------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREI 219 (394)
T ss_pred ecCCccCcCCHHHHHhhcCc--------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccc
Confidence 99764467899999888843 5889999999999999999853 345677 899999999842 1
Q ss_pred ---CCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 342 ---PKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 342 ---G~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+.. .+.-++...-.+++.|+-|.||.+--.+|++++.+..
T Consensus 220 ~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~ 262 (394)
T PRK06836 220 VYDGAE-VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEM 262 (394)
T ss_pred ccCCCC-CCChHHccCcEEEEecchhhccCcceeeEEEecCHHH
Confidence 110 1111223344688999999998422348888866543
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-09 Score=119.85 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=143.7
Q ss_pred HHHHHhhcccCCCCceecccCCCCC--CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCC
Q 002866 136 IDQLRANEYLHLSPKVCLDYCGFGL--FSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNI 212 (872)
Q Consensus 136 ID~lR~~EFP~L~~~IYLDyAAtgp--~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA 212 (872)
++.+-+. -|...+.++|+++...+ .|+.+.+++.+ .+. .. ....|+.+. ...+.+.+.+.++++.|+
T Consensus 28 ~~~~~~~-~~~~~~~i~l~~g~~~~~~p~~~~~~~~~~-------~~~-~~-~~~~Y~~~~G~~~LR~aia~~l~~~~g~ 97 (405)
T PRK06207 28 LEALLRG-EPLPGRPVDFSHGDVDAHEPTPGAFELFSA-------GVE-RG-GVQAYTEYRGDADIRELLAARLAAFTGA 97 (405)
T ss_pred hhhhhcC-CcCCCCceecCCcCCCCCCCCHHHHHHHHH-------HHh-cC-CCccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4444433 46666789999988764 34555554322 111 10 011244322 223444455555555585
Q ss_pred CCCC-CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC----CCCccCHHHHH
Q 002866 213 PENE-YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW----PTLKLCSTDLR 287 (872)
Q Consensus 213 ~~dE-Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~----p~g~Id~edLe 287 (872)
+.+. ..|++|+|+++|+.+++..+ +.+||.|++..- ........++..|+++..++++. .+..++.++|+
T Consensus 98 ~~~~~~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P----~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~ 172 (405)
T PRK06207 98 PVDAADELIITPGTQGALFLAVAAT-VARGDKVAIVQP----DYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE 172 (405)
T ss_pred CCCCCCCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCC----CchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHH
Confidence 3221 25999999999999999987 478999876521 22233455677899999998752 13457889998
Q ss_pred HHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCCccCCCCCCCCc---
Q 002866 288 KQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLFRPD--- 356 (872)
Q Consensus 288 ~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l~~D--- 356 (872)
+++.. ++++|.++.-+|.||.++|.+ +++.|+++++++++|-+-.- +.. ...+..+..|
T Consensus 173 ~~~~~--------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~--~~~~~~~~~~~~~ 242 (405)
T PRK06207 173 EAFKA--------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTS--YTHLRALPIDPEN 242 (405)
T ss_pred Hhhhh--------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC--CCchhcCCCCcCc
Confidence 87753 478888888899999999965 34567899999999998321 210 1112212222
Q ss_pred -EEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 357 -FIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 -Flv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++.|+-|.||. .| +|.++..+++++.+.
T Consensus 243 vi~i~SfSK~~~l--pGlRiG~ii~~~~l~~~~~ 274 (405)
T PRK06207 243 VITIMGPSKTESL--SGYRLGVAFGSPAIIDRME 274 (405)
T ss_pred EEEEecchhhccC--cccceEEEEcCHHHHHHHH
Confidence 789999999984 27 898887766655443
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-09 Score=118.15 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=131.3
Q ss_pred CceecccCCCCC----CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc------CCCCCCCc
Q 002866 149 PKVCLDYCGFGL----FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL------NIPENEYG 218 (872)
Q Consensus 149 ~~IYLDyAAtgp----~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL------gA~~dEY~ 218 (872)
+.+.|+.|.-.+ .|+.+++++.+ ... . ...|+.+. -....|+.||+++ +++++ +
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~-------~~~-~---~~~Y~~~~---G~~~lr~~ia~~~~~~~~~~~~~~--~ 97 (404)
T PRK09265 34 KILKLNIGNPAPFGFEAPDEILRDVIR-------NLP-T---AQGYSDSK---GLFSARKAIMQYYQQKGIPDVDVD--D 97 (404)
T ss_pred CeEEecCCCCCcCCCCCCHHHHHHHHH-------Hhh-c---CCCCCCCC---CcHHHHHHHHHHHhccCCCCCCcc--c
Confidence 478888765532 45566665432 111 1 12354443 2347899999988 77776 4
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccC
Q 002866 219 LVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 219 VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~ 297 (872)
|++|+|+++++.+++..+ +++|++|++. +..|.. +...++..|+++..++.+.. +..++.+++++.+..
T Consensus 98 i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~-~p~y~~---~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----- 167 (404)
T PRK09265 98 IYIGNGVSELIVMAMQAL-LNNGDEVLVP-APDYPL---WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP----- 167 (404)
T ss_pred EEEeCChHHHHHHHHHHh-CCCCCEEEEe-CCCCcC---hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc-----
Confidence 999999999999999887 5789998765 333332 33445567888888887542 345788888877642
Q ss_pred CCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeecccc----CCCCCccCCCCCCCCc---EEEEcccccC
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSL----GPKDMDSLGLSLFRPD---FIITSFYRVF 366 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~----aG~~mipLDLs~l~~D---Flv~S~HK~f 366 (872)
+++++.+++.+|.||.++| ++ ++..|+++|+++++|-+-. -+.. ...+..+..+ +++.|+-|.|
T Consensus 168 ---~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~vi~~~S~SK~~ 242 (404)
T PRK09265 168 ---RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAV--HISIASLAPDLLCVTFNGLSKAY 242 (404)
T ss_pred ---cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCC--cCCHHHcCCCceEEEEecchhhc
Confidence 5889999999999999999 54 4567799999999998732 1210 1112122222 3457778998
Q ss_pred CCCCCc--eEEEEE
Q 002866 367 GFDPTG--FGCLLI 378 (872)
Q Consensus 367 G~~PtG--vG~LyV 378 (872)
|. .| +|+++.
T Consensus 243 ~~--pGlRiG~~v~ 254 (404)
T PRK09265 243 RV--AGFRVGWMVL 254 (404)
T ss_pred cC--cccceEEEEE
Confidence 74 25 687775
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=127.43 Aligned_cols=169 Identities=13% Similarity=0.147 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
.+.|++||+++|++++ +|++|+|+++|+.+++.++. .+| ++|++. + +....+...++..|++++.+|++. +
T Consensus 63 ~~Lr~aia~~~~~~~~--~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~-~---P~y~~y~~~~~~~g~~v~~v~~~~-~ 134 (354)
T PRK04635 63 PELINAYSAYAGVAPE--QILTSRGADEAIELLIRAFC-EPGQDSIACF-G---PTYGMYAISAETFNVGVKALPLTA-D 134 (354)
T ss_pred HHHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHHhc-CCCCCeEEEc-C---CChHHHHHHHHHcCCEEEEEecCC-C
Confidence 5789999999999887 49999999999999999884 567 777764 2 223344456778899999999874 3
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHH-CCcEEEeeccccCCC-CCccCCCCC-CC
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQ-NHWHVLLDAGSLGPK-DMDSLGLSL-FR 354 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are-~G~~VLVDAAQ~aG~-~mipLDLs~-l~ 354 (872)
..++.+.++ .+ ++++++.++..+|.||+++|.+.+. .++. .+++|++|.+..--. .....++.. .+
T Consensus 135 ~~~~~~~l~-~~---------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~ 204 (354)
T PRK04635 135 YQLPLDYIE-QL---------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYP 204 (354)
T ss_pred CCCCHHHHH-hc---------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCC
Confidence 567777765 22 1588999999999999999998554 4443 369999999952110 000111111 11
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEEeCCCcccccC
Q 002866 355 PDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~P 388 (872)
-=+++.|++|+||. .| +|+++++++.++.+..
T Consensus 205 ~~iv~~S~SK~~~l--~GlRlG~~i~~~~~~~~l~~ 238 (354)
T PRK04635 205 NLVVLRTLSKAFAL--AGARCGFTLANEELIEILMR 238 (354)
T ss_pred CEEEEechHHHhhh--hHHHHhhhhCCHHHHHHHHh
Confidence 11478899999983 46 7999998888776653
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=120.46 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=117.6
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.|+||. ..+.+++||++.|++. .++++|+++|+.++.. + +.+|++||+....-+.....+...+++.|++
T Consensus 48 r~~~pt----~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~~-l-l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 117 (366)
T PRK08247 48 RTGNPT----RGVLEQAIADLEGGDQ----GFACSSGMAAIQLVMS-L-FRSGDELIVSSDLYGGTYRLFEEHWKKWNVR 117 (366)
T ss_pred CCCCch----HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHH-H-hCCCCEEEEecCCcCcHHHHHHHHhhccCce
Confidence 467775 4678899999999953 3567777899998764 3 4689998866432122233344556778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..++. .+.+++++++.. +|++|.+...+|.+|.+.+++ +++.|+++|+.+++|.+...+....+
T Consensus 118 v~~vd~------~d~~~l~~~i~~--------~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p 183 (366)
T PRK08247 118 FVYVNT------ASLKAIEQAITP--------NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP 183 (366)
T ss_pred EEEECC------CCHHHHHHhccc--------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc
Confidence 988764 257788877742 589999989999999999997 56788999999999999765531112
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc-eEEEEE
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTG-FGCLLI 378 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtG-vG~LyV 378 (872)
+ ..++|+++.|+.|++++ +.+ .|.+++
T Consensus 184 ~---~~g~di~i~S~sK~~~g-~~d~~~G~iv 211 (366)
T PRK08247 184 L---EEGADIVIHSATKYLGG-HNDVLAGLVV 211 (366)
T ss_pred h---hcCCcEEEeecceeccC-CCceeeeEEe
Confidence 2 35899999999999986 544 344333
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-09 Score=123.99 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=150.6
Q ss_pred hHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC
Q 002866 135 KIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg 211 (872)
.++.+++.-.|.... .-|+.|--+++.+..++-.+.- +.+..+. ......|....+...+-+-+++++|
T Consensus 113 il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~------sa~n~~~--~~~~~sPa~t~lE~~vi~wl~~l~g 184 (539)
T PLN02590 113 LLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLN------AGLSVVG--FTWLTSPAATELEIIVLDWLAKLLQ 184 (539)
T ss_pred HHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHH------Hhccccc--CCcccCchhHHHHHHHHHHHHHHhC
Confidence 455555543454432 4577776666666666543211 1111111 1122456666788889999999999
Q ss_pred CCCC-----CCcEEEeCCHHHHHHHH---HhhCCCC----CC--CeEEEecccCchhHHHHHHHHHHcCc---EEEEEec
Q 002866 212 IPEN-----EYGLVFTVSRGSAFKLL---AESYPFH----TN--KKLLTMFDYESQSVNWMAQSAKEKGA---KVYSAWF 274 (872)
Q Consensus 212 A~~d-----EY~VVFTsnATeALnLV---aeslpf~----~G--d~ILT~~DhEHnSVl~~~~~AkrkGa---eV~~Vpv 274 (872)
.++. ...=+||+++|+|+-+. |+..-.+ .+ +-++...+.-|.|+. +.|.-.|+ .|+.||+
T Consensus 185 lp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~---KAa~ilGlg~~~vr~Vp~ 261 (539)
T PLN02590 185 LPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR---KACLIGGIHEENIRLLKT 261 (539)
T ss_pred CCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH---HHHHHcCCCcccEEEEeC
Confidence 9753 12478999999986442 2211011 11 224444565677664 34444566 5889999
Q ss_pred cC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCcc----C
Q 002866 275 KW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDS----L 348 (872)
Q Consensus 275 d~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mip----L 348 (872)
+. ++++++.++|+++|...++ ..-..-+|+-++-+-.||.+=||+.| ..|+++|+++|||||-.+..-..+ +
T Consensus 262 d~~~~~~md~~~L~~~I~~d~~--~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~ 339 (539)
T PLN02590 262 DSSTNYGMPPESLEEAISHDLA--KGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF 339 (539)
T ss_pred CCCCCCcCCHHHHHHHHHHHHh--cCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH
Confidence 85 3578999999999976432 22245678888888899999999855 577999999999988443320000 1
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.-.--.+|-+++++|||++. |.++|+|++|+.
T Consensus 340 ~~Gie~ADSit~D~HK~l~~-p~~cg~llvr~~ 371 (539)
T PLN02590 340 IDGIENADSFNMNAHKWLFA-NQTCSPLWVKDR 371 (539)
T ss_pred hcCCccCCEEEECchhhcCc-CcCEEEEEecCH
Confidence 11113589999999999988 999999999985
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=125.56 Aligned_cols=165 Identities=11% Similarity=0.050 Sum_probs=111.5
Q ss_pred HHHHH-HHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH--HHHHHHHcCcEE--EE
Q 002866 197 TVEHD-IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW--MAQSAKEKGAKV--YS 271 (872)
Q Consensus 197 ~~iee-ARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~--~~~~AkrkGaeV--~~ 271 (872)
..+|+ +++++++++|+. +.+++++++|.|+..++.++ .++||+|++.. ..|.++.. .+ ....+..+ ..
T Consensus 73 ~~lE~~~~~~la~l~g~~---~alv~~~SG~~A~~~~l~al-~~~GD~Vl~~~-~~~~~~~~~g~~--~~~~~~~~~~~~ 145 (416)
T PRK13034 73 DEVEALAIERAKQLFGCD---YANVQPHSGSQANGAVYLAL-LKPGDTILGMS-LSHGGHLTHGAK--VSLSGKWYNAVQ 145 (416)
T ss_pred HHHHHHHHHHHHHHhCCC---ceEEecCCcHHHHHHHHHHh-cCCCCEEEEcC-ccceeeeecCCc--ceeccceeeeEE
Confidence 45555 899999999985 45788899999999999888 68999988763 24444211 00 00011222 23
Q ss_pred EeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCC
Q 002866 272 AWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGL 350 (872)
Q Consensus 272 Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDL 350 (872)
.+++..++.++++++++++... ++++|.+.. ..+|...|+.. .+.|+++|+.+++|+||++|. ...+.
T Consensus 146 ~~~~~~~~~~d~~~le~~l~~~-------~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~--~~~g~ 214 (416)
T PRK13034 146 YGVDRLTGLIDYDEVEELAKEH-------KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGL--VAAGE 214 (416)
T ss_pred cccccccCCcCHHHHHHHHhhc-------CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccC--cccCC
Confidence 3333334568999999888531 367887643 34788889975 457899999999999998774 22222
Q ss_pred C---CCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 351 S---LFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 351 s---~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
. .-.+|++++|+||++++ |.| |+++.+++
T Consensus 215 ~~~~~~~~Di~~~s~~K~l~g-~~G-G~v~~~~~ 246 (416)
T PRK13034 215 HPNPFPHAHVVTTTTHKTLRG-PRG-GMILTNDE 246 (416)
T ss_pred CCCCCCCceEEEEeCcccCCC-CCC-eEEEECcH
Confidence 1 12589999999999966 777 55555443
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=120.72 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+++--+++++++|+. .++.|+|+|.||.++..++.+++|++|+++.-.. .++. ......|+++++++++.
T Consensus 25 ~~~~~fE~~~a~~~g~~----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~-~~~~---~ai~~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF-PATA---SAILWAGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS--THHH---HHHHHTT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc-hHHH---HHHHHhccEEEEEeccC
Confidence 46677888999999974 3889999999999999999999999988763222 2232 33445799999999997
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCC--C
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSL--F 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~--l 353 (872)
.++.+++++++++|.. +|+.|.+.|. -|...+++. .+.|+++|+.|+-||||+.|. .++=.. .
T Consensus 97 ~~~~id~~~~~~~i~~--------~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~---~~~g~~~G~ 162 (363)
T PF01041_consen 97 ETLNIDPEALEKAITP--------KTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGA---RYKGRPVGS 162 (363)
T ss_dssp TTSSB-HHHHHHHHHT--------TEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT----EETTEETTS
T ss_pred CcCCcCHHHHHHHhcc--------CccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCc---eeCCEeccC
Confidence 7899999999999975 4788888774 788889985 567899999999999999985 222111 1
Q ss_pred CCcEEEEccc--ccCCCCCCceEEEEEeCC
Q 002866 354 RPDFIITSFY--RVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 354 ~~DFlv~S~H--K~fG~~PtGvG~LyVRk~ 381 (872)
--|+.+|||| |.+.. . .-|+++.+.+
T Consensus 163 ~gd~~~fSf~~~K~i~~-g-eGG~v~~~~~ 190 (363)
T PF01041_consen 163 FGDIAIFSFHPTKIITT-G-EGGAVVTNDP 190 (363)
T ss_dssp SSSEEEEESSTTSSS-S-S-S-EEEEESTH
T ss_pred CCCceEecCCCCCCCcC-C-CCeeEEecHH
Confidence 2499999998 76643 1 2355655553
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-10 Score=122.87 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=120.0
Q ss_pred HHHHHHHHHhc----CC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----NI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----gA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ |. ++++ .|++|+|+++|+.+++..+ .++||.|++..- .+. +....++..|+++..+|
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~~-~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P-~y~---~~~~~~~~~G~~v~~v~ 143 (383)
T TIGR03540 70 LAYRQAVADWYKRRFGVELDPET-EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDP-GYP---VYRIGTLFAGGEPYEMP 143 (383)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCC-CCc---chHHHHHhcCCEEEEEe
Confidence 46778888776 33 3331 4999999999999999987 478999876531 122 23344567899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKD 344 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~ 344 (872)
.+.. +..++.+++++.+.. ++++|.++..+|.||..+|.+ +++.|+++++++++|-+.. .++.
T Consensus 144 ~~~~~g~~~d~~~l~~~~~~--------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~ 215 (383)
T TIGR03540 144 LKEENGFLPDFDAIPEDIAK--------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK 215 (383)
T ss_pred cCcccCCccCHHHHHhhccc--------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence 8643 345688888777642 478999888899999999963 4567899999999999964 2221
Q ss_pred CccCCCCC----CCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 345 MDSLGLSL----FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 345 mipLDLs~----l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
+..+.. ....+++.|+=|.|| ..| +|+++..+++++.+
T Consensus 216 --~~~~~~~~~~~~~~i~~~SfSK~~g--~~GlRiG~~i~~~~l~~~~ 259 (383)
T TIGR03540 216 --APSFLEVDGAKDVGIEFHSLSKTYN--MTGWRIGMAVGNADLIAGL 259 (383)
T ss_pred --CcCcccCCCcccCEEEEEecccccC--CccceeeEEeCCHHHHHHH
Confidence 222221 134577788889998 448 99998776665544
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-10 Score=123.95 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|+.||++++ ++++ ..|++|+|+++|+.+++..+ .++||.|++.. ++.......++..|+++..+
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~----P~y~~~~~~~~~~G~~~~~v 144 (399)
T PRK07681 71 IQEFHEAVTEYYNNTHNVILNAD-KEVLLLMGSQDGLVHLPMVY-ANPGDIILVPD----PGYTAYETGIQMAGATSYYM 144 (399)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCC-CeEEECCCcHHHHHHHHHHh-CCCCCEEEECC----CCccchHHHHHhcCCEEEEE
Confidence 3468889998885 4552 25999999999999999887 47899987652 12223344567789999999
Q ss_pred eccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCC
Q 002866 273 WFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPK 343 (872)
Q Consensus 273 pvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~ 343 (872)
|++..+ ..++.+++++.+.. ++++|.++.-+|.||.++|.+ +++.|+++++++++|-+.. -+.
T Consensus 145 ~~~~~~~~~~d~~~l~~~~~~--------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~ 216 (399)
T PRK07681 145 PLKKENDFLPDLELIPEEIAD--------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN 216 (399)
T ss_pred ecCCCCCCcCCHHHHHHhccc--------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC
Confidence 987432 35688888777642 478999988899999999964 3466789999999999953 121
Q ss_pred CCccCCCC----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 344 DMDSLGLS----LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mipLDLs----~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
....+. .....+++.|+.|.||. .| +|.++..+++++.+.
T Consensus 217 --~~~~~~~~~~~~~~~i~~~S~SK~~~~--~GlRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 217 --KPISFLSVPGAKEVGVEINSLSKSYSL--AGSRIGYMIGNEEIVRALT 262 (399)
T ss_pred --CCCChhhCCCCcccEEEEeecccccCC--ccceeEEEecCHHHHHHHH
Confidence 111211 12345788899999984 47 899987776655443
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=123.69 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=116.1
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
.+.|+.|++++|++++ .|++|+|+++++.+++..+ .+| .|++. +..+.. +...++..|+++..++
T Consensus 50 ~~lr~~la~~~~~~~~--~i~~t~G~~~~i~~~~~~l--~~g-~vl~~-~p~y~~---~~~~~~~~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA--SVLPVNGAQEAIYLLPRLL--APG-RVLVL-APTYSE---YARAWRAAGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHh--CCC-eEEEe-CCCcHH---HHHHHHHcCCEEEEeC------
Confidence 6899999999999866 4999999999999988775 466 55554 222232 3345677899988765
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc--CCCCCccCCC-CC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL--GPKDMDSLGL-SL 352 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~--aG~~mipLDL-s~ 352 (872)
+.+++++.+. +++++.++..+|.||.++|.+. ++.|+++|+++++|.+.. .+.. ...++ ..
T Consensus 115 --d~~~l~~~~~---------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~ 182 (330)
T TIGR01140 115 --DLDRLPAALE---------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQAAR 182 (330)
T ss_pred --CHHHHHhhcc---------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc-chhhHhcc
Confidence 5677776662 3668888899999999999753 356688999999999963 3210 01111 12
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.+.++++.|++|+||.+-..+|+++++++.+..+.+
T Consensus 183 ~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 183 FPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLRE 218 (330)
T ss_pred CCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHh
Confidence 345699999999999411336999998887766653
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=119.12 Aligned_cols=204 Identities=13% Similarity=0.144 Sum_probs=137.5
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.++||++... +.|+.+++++.+ .+... ....|..+ -..+.|++||+++|++++ .|++|+|++++
T Consensus 20 ~i~l~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~Y~~~----g~~~lr~~ia~~~~~~~~--~I~~t~G~~~~ 84 (337)
T PRK03967 20 RIWLDKNENPFDLPEELKEEIFE-------ELKRV--PFNRYPHI----TSDPLREAIAEFYGLDAE--NIAVGNGSDEL 84 (337)
T ss_pred eEEecCCCCCCCCCHHHHHHHHH-------HhhcC--ccccCCCC----CHHHHHHHHHHHhCcCcc--eEEEcCCHHHH
Confidence 6899999877 456777766432 12111 01124322 245799999999999886 59999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
++++...+ +|++|++.. ..+. .+...++..|+++..++.+. +..++.+.+++.+. +++++.++
T Consensus 85 l~~~~~~~---~gd~V~v~~-P~y~---~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~---------~~~~v~~~ 147 (337)
T PRK03967 85 ISYLVKLF---EGKHIVITP-PTFG---MYSFYAKLNGIPVIDVPLKE-DFTIDGERIAEKAK---------NASAVFIC 147 (337)
T ss_pred HHHHHHHh---CCCeEEEeC-CChH---HHHHHHHHcCCeEEEeecCC-CCCcCHHHHHHhcc---------CCCEEEEe
Confidence 99998876 588887652 1222 33445677899999999875 35678888876431 47788899
Q ss_pred CccCcccchhcHHHHHHHHHCCcEEEeecccc--CCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 309 VQSRVTGAKYSYQWMALAQQNHWHVLLDAGSL--GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 309 ~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~--aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.-+|.||..+|.+.+..+-++++++++|.+-. .+..+.++ +....-=+++.|+=|.||.+=.-+|++++.++.++.+
T Consensus 148 ~P~NPtG~~~~~~~l~~i~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~ 226 (337)
T PRK03967 148 SPNNPTGNLQPEEEILKVLETGKPVVLDEAYAEFSGKSLIGL-IDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDAL 226 (337)
T ss_pred CCCCCCCCCCCHHHHHHHHhcCCEEEEECchhhhcccchHHH-HhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHH
Confidence 99999999999986554335799999999842 22211111 1111123677999999984113389998766655544
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-10 Score=122.84 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|+.|++++ | ++++ +|++|+|+|+|+.++...+ .++||.|++..- .+. .....++..|+++..+
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p-~y~---~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 72 LPELREAIVKREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILIPGP-SYP---PYTGLVKFYGGVPVEY 144 (398)
T ss_pred cHHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCC-CCc---chHHHHHHcCCEEEEe
Confidence 357888888887 3 4554 6999999999999999988 688999887632 222 2334556678887777
Q ss_pred -eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccC----CC
Q 002866 273 -WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 273 -pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
+.+..+..++.+++++.+.. +++++.+++.+|.||..+|. + +++.|+++|+++++|.+-.. +.
T Consensus 145 ~~~~~~~~~~d~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~ 216 (398)
T PRK08363 145 RTIEEEGWQPDIDDIRKKITE--------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK 216 (398)
T ss_pred ccccccCCcCCHHHHHhhCCc--------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc
Confidence 45443445788888776642 47899999999999999994 4 35677899999999998421 11
Q ss_pred CCcc-CCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 344 DMDS-LGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 344 ~mip-LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
. .+ ..+....-=.++.|+.|+|+.+.-++|++++
T Consensus 217 ~-~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~ 251 (398)
T PRK08363 217 H-VSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF 251 (398)
T ss_pred c-cCHHHcCcCCcEEEEecchhccCCccceEEEEEE
Confidence 0 01 1111111125578999998753456899987
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=117.74 Aligned_cols=212 Identities=10% Similarity=0.113 Sum_probs=141.0
Q ss_pred CceecccCCCCCC-cHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCC-CcEEEeCCH
Q 002866 149 PKVCLDYCGFGLF-SYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENE-YGLVFTVSR 225 (872)
Q Consensus 149 ~~IYLDyAAtgp~-p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dE-Y~VVFTsnA 225 (872)
+.+.|+.+.-... ++...+++.+ .... ....|+.+. ...+.+.+++.+++++|++.+. .+|++|+|+
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~--------~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~ 99 (384)
T PRK12414 30 DALNLSQGAPNFAPDPALVEGVAR--------AMRD--GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASA 99 (384)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHH--------HHHh--CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECCh
Confidence 4678887665543 4555554321 1111 112354332 2356667777777778875211 259999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
++|+.+++.++ +.+||+|++. +..+.... ..++..|+++..+|++..+..++.++|++++.. ++++|
T Consensus 100 ~~al~~~~~~l-~~~gd~Vlv~-~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--------~~~~v 166 (384)
T PRK12414 100 SEGLYAAISAL-VHPGDEVIYF-EPSFDSYA---PIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP--------RTRMI 166 (384)
T ss_pred HHHHHHHHHHh-cCCCCEEEEe-CCCccchH---HHHHHcCCEEEEEecCccccccCHHHHHhhcCc--------ccEEE
Confidence 99999999988 5789998765 32333332 334557999999998765567889999887742 58899
Q ss_pred EEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCCCccCCCCCC----CCcEEEEcccccCCCCCCc-
Q 002866 306 VFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKDMDSLGLSLF----RPDFIITSFYRVFGFDPTG- 372 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~mipLDLs~l----~~DFlv~S~HK~fG~~PtG- 372 (872)
.++..+|.||.+++.+ +++.|+++++++++|.+-. -+.. ...+..+ +--+++.|+-|.||. .|
T Consensus 167 ~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~--~~~~~~~~~~~~~~i~~~SfSK~~~~--pGl 242 (384)
T PRK12414 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGAR--HHSMARHRELAERSVIVSSFGKSYHV--TGW 242 (384)
T ss_pred EEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCC--ccCcccCcCccCcEEEEecccccccC--ccc
Confidence 9999999999998754 3466789999999999942 1211 1112211 123899999999984 36
Q ss_pred -eEEEEEeCCCccccc
Q 002866 373 -FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 -vG~LyVRk~~i~~L~ 387 (872)
+|++++.+++++.+.
T Consensus 243 RiG~~v~~~~l~~~l~ 258 (384)
T PRK12414 243 RVGYCLAPAELMDEIR 258 (384)
T ss_pred eEEEEecCHHHHHHHH
Confidence 698988777665553
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-08 Score=107.96 Aligned_cols=220 Identities=17% Similarity=0.131 Sum_probs=149.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-----CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-----AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-----psS~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
.|||=-++-+++|+.+...+.+. +..... -..+|. |.. ..-+.+-.-++.++||..+| |+.-.+
T Consensus 68 ~iYlcGNSLGLmPK~t~~~~~~e----LDkWak----~av~gH~~GkvPW~-~~De~il~l~~~iVGA~e~E--vavmNs 136 (465)
T KOG3846|consen 68 VIYLCGNSLGLMPKSTRNSINAE----LDKWAK----CAVEGHFKGKVPWV-SIDEPILPLLAPIVGAQENE--VAVMNS 136 (465)
T ss_pred eEEEeccccccCchhhHhHHHHH----HHHHHh----hhhhccccccccee-ecchhhhhhhhhhccCCchh--hhhHhh
Confidence 79999999999998876543211 111111 011221 221 23345667789999998876 888888
Q ss_pred HHHHHHHHHhhCCCCC---CCeEEEec-ccCchhHHHHHHHHHHcCcEE----EEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 225 RGSAFKLLAESYPFHT---NKKLLTMF-DYESQSVNWMAQSAKEKGAKV----YSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 225 ATeALnLVaeslpf~~---Gd~ILT~~-DhEHnSVl~~~~~AkrkGaeV----~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
-|.-++.+.-+| +++ .-+|+... .+++. -..+-..++-+|+.+ +.+.-++..--+..+++.+.|..
T Consensus 137 LTvNlh~Ll~sF-yKPTekR~KILlE~kaFPSD-hYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEk---- 210 (465)
T KOG3846|consen 137 LTVNLHSLLISF-YKPTEKRFKILLEKKAFPSD-HYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEK---- 210 (465)
T ss_pred hhhHHHHHHHHh-cCCcchhhhhhhccCCCCch-HHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHh----
Confidence 899999888776 232 22354221 12211 112223345567654 22332332233556777777764
Q ss_pred CCCCCceEEEEeCccCcccchhcHHHHHHH-HHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQWMALA-QQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGC 375 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe~I~~A-re~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~ 375 (872)
.+....||+|+.+..-||+.+++..|..| |..|++|=.|-|+++|. +|+-|-++++||.+-..||.+.+.|-|+|.
T Consensus 211 -ngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgN--VpL~LHdWgVDFACWCSYKYlnaGaGgIgG 287 (465)
T KOG3846|consen 211 -NGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGN--VPLQLHDWGVDFACWCSYKYLNAGAGGIGG 287 (465)
T ss_pred -cCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcC--CceEEeecCCceEEEeeecccccCCCccce
Confidence 34467899999999999999999988888 66899999999999997 899999999999999999986544889999
Q ss_pred EEEeCCCcccccCC
Q 002866 376 LLIKKSVMGSLQNQ 389 (872)
Q Consensus 376 LyVRk~~i~~L~P~ 389 (872)
|+|.........|.
T Consensus 288 lFvHekh~~~~~pr 301 (465)
T KOG3846|consen 288 LFVHEKHTKESLPR 301 (465)
T ss_pred eeeehhhhcchhhH
Confidence 99998876654443
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=126.90 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=132.8
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEE-EeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-HHHHHcCc
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLV-FTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-QSAKEKGA 267 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VV-FTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-~~AkrkGa 267 (872)
+..|...+++.++++.+.++|+++ ++|.|+ ++.++|.|+..+..++--++|+.+|+.-.+ +- .|. +.+++.|+
T Consensus 32 HRs~~F~~i~~e~~~~L~~l~~~~-~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g~F---G~-r~~~eia~~~g~ 106 (374)
T TIGR01365 32 HRSKLGKEKLAEAIKKTREMLGVP-ADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWESF---GK-GWVTDVTKQLKL 106 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEECHH---HH-HHHHHHHHhcCC
Confidence 344555689999999999999984 456655 589999999998888632477777654221 22 445 88999999
Q ss_pred -EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 -KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 -eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++..+.+.|. -.+++++++. . .. |+++|.--.||+++|++.+.... +++.++|||++++|. .
T Consensus 107 ~~v~~l~~~~g-~~~~~~~ve~---~---------~~-v~~vhnETSTGv~npv~~i~~~~-~~~lliVDavSs~g~--~ 169 (374)
T TIGR01365 107 PDVRVLEAEYG-KLPDLKKVDF---K---------ND-VVFTWNGTTSGVRVPNGDFIPAD-REGLTICDATSAAFA--Q 169 (374)
T ss_pred CCcEEEcCCCC-CCCCHHHcCC---C---------CC-EEEecCCCchheecccccccccc-CCCcEEEEccchhcC--C
Confidence 5888888874 4567777751 1 11 56888888899999997443222 589999999998886 6
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+++++. +|+++++.+|.+|. |.|+++++++++.++..+
T Consensus 170 ~l~~d~--iDv~~tgsQK~L~~-ppGls~v~vs~~Al~~~~ 207 (374)
T TIGR01365 170 DLDYHK--LDVVTFSWQKVLGG-EGAHGMLILSPRAVARLE 207 (374)
T ss_pred CCChhH--CcEEEEechhccCC-CCceEEEEECHHHHHHHh
Confidence 888884 99999999999998 889999999999887654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-09 Score=122.29 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC--------CCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY--------PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl--------pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
...+.++++|+++|++ .+++|+|+|+|+.+++.++ .+++|++||+. ...|.+... .....|+++
T Consensus 64 ~~~~fe~~lA~~~g~~----~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~-~~t~~a~~~---~v~~~G~~p 135 (438)
T PRK15407 64 FNDAFEKKLAEFLGVR----YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITV-AAGFPTTVN---PIIQNGLVP 135 (438)
T ss_pred hHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEEC-CCCcHHHHH---HHHHcCCEE
Confidence 3567899999999984 2899999999999888765 56789998866 334444432 234579999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
+.++++..+..++.+++++++.. +|++|.+.+ .+|...+++ +++.|+++|+.|++|++|+.|.. .-
T Consensus 136 v~vdvd~~~~~id~~~le~~i~~--------~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~--~~ 202 (438)
T PRK15407 136 VFVDVELPTYNIDASLLEAAVSP--------KTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGST--YD 202 (438)
T ss_pred EEEecCCCcCCcCHHHHHHHcCc--------CCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhh--cC
Confidence 99998755677899999887752 588888877 478888997 56788999999999999999862 11
Q ss_pred C--CCCCCCcEEEEccccc--CCCCCCceEEEEEeCCCc
Q 002866 349 G--LSLFRPDFIITSFYRV--FGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 349 D--Ls~l~~DFlv~S~HK~--fG~~PtGvG~LyVRk~~i 383 (872)
+ +..++ |+.+||||.. +.. -.| |+|+.+.+.+
T Consensus 203 g~~~G~~g-d~~~fSf~~~k~~~~-geG-G~l~t~d~~l 238 (438)
T PRK15407 203 GRMTGTFG-DIATLSFYPAHHITM-GEG-GAVFTNDPLL 238 (438)
T ss_pred CeeeeccC-ceEEEeCCCCCCccc-cCc-eEEEECCHHH
Confidence 2 33344 9999999852 321 125 8888877644
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=122.03 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=122.6
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHH-HHHHHHcCcEE
Q 002866 191 GGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWM-AQSAKEKGAKV 269 (872)
Q Consensus 191 gNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~-~~~AkrkGaeV 269 (872)
+||. +....++||++.|+. | .+.|+|++.|+.++..++ .++||+||++.. -+.+...+ ...+++.|+++
T Consensus 59 ~nPt----v~~lE~~la~leg~~---~-av~~~SG~aAi~~al~al-l~~GD~VI~~~~-~Y~~T~~~~~~~l~~~Gi~v 128 (432)
T PRK06702 59 GNPT----LAAFEQKLAELEGGV---G-AVATASGQAAIMLAVLNI-CSSGDHLLCSST-VYGGTFNLFGVSLRKLGIDV 128 (432)
T ss_pred CCcH----HHHHHHHHHHHhCCC---c-EEEECCHHHHHHHHHHHh-cCCCCEEEECCC-chHHHHHHHHHHHHHCCCEE
Confidence 4665 456778999999984 2 677999999999988877 689999987643 22222222 33357789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
.++.+ .+++++++++|.. +|++|.+.+.+|.++.+.|++ +++.||++|+.+++|++-+.|. -.
T Consensus 129 ~~vd~-----~~d~~~l~~~I~~--------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~---~~ 192 (432)
T PRK06702 129 TFFNP-----NLTADEIVALAND--------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPY---LC 192 (432)
T ss_pred EEECC-----CCCHHHHHHhCCc--------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchh---hC
Confidence 98753 3577889888853 588999999999999999998 5678899999999999965442 22
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+.-++++|.++-|.-||+|+.-.++|.+.+
T Consensus 193 ~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 193 QAFEHGANIIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred ChhhcCCCEEEEccccccCCCcceeceEEE
Confidence 333679999999999998874445665555
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=121.59 Aligned_cols=171 Identities=11% Similarity=0.091 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhc----CC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL----NI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL----gA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|+.||+++ |. ++++ .|++|+|+++|+.+++..+ .++|+.|++..- +.......++..|+++..+
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~-~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P----~y~~~~~~~~~~g~~~~~v 144 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDPET-EVISLIGSKEGIAHIPLAF-VNPGDVVLVPDP----GYPVYKIGTIFAGGEPYFM 144 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCC----CCcChHHHHHHcCCEEEEE
Confidence 346888888887 43 4432 4999999999999999887 478999876521 1222334466789999999
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CC
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
|.+.. +..++.+++++.+.. +++++.++.-+|.||..+|.+ +++.|+++++++++|-+..- ++
T Consensus 145 ~~~~~~g~~~d~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 216 (385)
T PRK09276 145 PLKEENGFLPDLDAIPEDVAK--------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY 216 (385)
T ss_pred ecCCCCCCcCCHHHHHHhccc--------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC
Confidence 98643 244678888766642 578999988899999999974 45667899999999999542 22
Q ss_pred CCccCCCCC----CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 344 DMDSLGLSL----FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mipLDLs~----l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
. ...+.. .+..+++.|+=|.|| +.| +|+++..+++++.+.
T Consensus 217 ~--~~~~~~~~~~~~~~i~~~S~SK~~g--~~GlRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 217 K--PPSFLEVPGAKDVGIEFHSLSKTYN--MTGWRIGFAVGNADLIAGLG 262 (385)
T ss_pred C--CCChhccCCCcCCEEEEecchhhcC--CcchhheeeeCCHHHHHHHH
Confidence 1 112211 233577889999998 457 999987766655543
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-09 Score=115.81 Aligned_cols=215 Identities=17% Similarity=0.247 Sum_probs=141.0
Q ss_pred CCCchhHHHHHhhcccCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHH
Q 002866 130 YQSSDKIDQLRANEYLHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMD 208 (872)
Q Consensus 130 y~~t~~ID~lR~~EFP~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~ 208 (872)
|.....+++.++ +|.. .+++.|+.+--.. .|+.+.+++.+ ....+ ..|+.+.. ...|+.||+
T Consensus 20 ~~~~~~~~~~~~-~~~~-~~~i~l~~~~~~~~~~~~~~~al~~--------~~~~~---~~Y~~~~g----~~lr~~ia~ 82 (371)
T PRK05166 20 YNAGLTIEEVRA-RYGV-PRIAKLGSNENPLGPSPAVRRAFAD--------IAELL---RLYPDPQG----RALREAIAA 82 (371)
T ss_pred CCCCCCHHHHHH-hcCC-cceEEcCCCCCCCCCCHHHHHHHHH--------HHHHh---hcCCCCcH----HHHHHHHHH
Confidence 433335666664 4643 3477887664433 34445554321 11111 23554442 279999999
Q ss_pred hcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHH
Q 002866 209 HLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRK 288 (872)
Q Consensus 209 lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~ 288 (872)
++|++++ +|++|+|+++++++++.++ +++|+.|++.. +........++..|+++..++.+. +..++.+++++
T Consensus 83 ~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~----P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~ 154 (371)
T PRK05166 83 RTGVPAD--RIILGNGSEDLIAVICRAV-LRPGDRVVTLY----PSFPLHEDYPTMMGARVERVTVTP-DLGFDLDALCA 154 (371)
T ss_pred HhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcC----CChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHH
Confidence 9999876 5999999999999999887 57899987652 223334456677899999999874 45688999988
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHH--HCCcEEEeecccc--CCC-CCcc-CCC-CCC-CCcEEE
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQ--QNHWHVLLDAGSL--GPK-DMDS-LGL-SLF-RPDFII 359 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Ar--e~G~~VLVDAAQ~--aG~-~mip-LDL-s~l-~~DFlv 359 (872)
.+.. ++++|.++..+|.||.++|.+.+ +.++ +.++++++|.+-. ... ...+ +.+ ... .--+++
T Consensus 155 ~~~~--------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i 226 (371)
T PRK05166 155 AVAR--------APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVL 226 (371)
T ss_pred hhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEE
Confidence 7753 47899999999999999999744 3333 2478899999832 210 0001 111 111 123788
Q ss_pred EcccccCCCCCCc--eEEEEEe
Q 002866 360 TSFYRVFGFDPTG--FGCLLIK 379 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~LyVR 379 (872)
.|+=|.||- .| +|.+++.
T Consensus 227 ~SfSK~~~l--~GlRiG~~i~~ 246 (371)
T PRK05166 227 RTFSKAYGL--AGLRVGYGLVS 246 (371)
T ss_pred eechHhhhc--chhheeeeecC
Confidence 999999983 25 6877764
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=119.83 Aligned_cols=172 Identities=13% Similarity=0.172 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhc----CC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL----NI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL----gA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|+.+|+++ |+ +++ -.|++|+|+|+|+.+++..+ +++|+.|++..- ....+...++..|+++..+
T Consensus 67 ~~~lr~~ia~~l~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p----~y~~~~~~~~~~g~~~~~~ 140 (387)
T PRK07683 67 LLELRKAACNFVKDKYDLHYSPE-SEIIVTIGASEAIDIAFRTI-LEPGTEVILPAP----IYPGYEPIIRLCGAKPVFI 140 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEcCC----CccchHHHHHHcCCEEEEe
Confidence 356888888887 33 444 14999999999999999887 578999887532 1222333456679999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCC-CCCcc
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGP-KDMDS 347 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG-~~mip 347 (872)
+.+..+..++.+++++.+.. ++++++++..+|.||..+|.+ ++..|+++|+++++|.+..-. ...-.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~--------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 212 (387)
T PRK07683 141 DTRSTGFRLTAEALENAITE--------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH 212 (387)
T ss_pred ecCcccCCCCHHHHHHhcCc--------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCc
Confidence 98754556677888877642 478999999999999999964 356778999999999994321 00011
Q ss_pred CCCCCC----CCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 348 LGLSLF----RPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l----~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
..+..+ +-.+++.|+=|.||. | | +|++++.+..++.+
T Consensus 213 ~~~~~~~~~~~~vi~~~s~SK~~~~-p-GlRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 213 TSIAHFPEMREKTIVINGLSKSHSM-T-GWRIGFLFAPSYLAKHI 255 (387)
T ss_pred CChhhccCCcCCeEEEeeccccccC-c-cceeEEEEcCHHHHHHH
Confidence 122222 235889999999985 2 6 88888776655444
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=120.79 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
+.|+.+++++ | ++++ +|++|+|+++|+.+++..+ .++||.|++..- .+... ...++..|+++..++.
T Consensus 71 ~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p-~y~~~---~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 71 ELREAYAAHYSRLYGAAISPE--QVHITSGCNQAFWAAMVTL-AGAGDEVILPLP-WYFNH---KMWLDMLGIRPVYLPC 143 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCC-CCcch---HHHHHhcCCEEEEEec
Confidence 4556666555 4 4444 5999999999999999988 478999876521 11222 2345678999999998
Q ss_pred cC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC-C-Ccc
Q 002866 275 KW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-D-MDS 347 (872)
Q Consensus 275 d~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~-mip 347 (872)
+. .+..++.+++++++.. +++++.+..-+|.||..+|.+ +++.|+++|+++++|.+-..-. . ..+
T Consensus 144 ~~~~~~~~~~~~l~~~~~~--------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~ 215 (386)
T PRK07550 144 DEGPGLLPDPAAAEALITP--------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP 215 (386)
T ss_pred CCCcCCCCCHHHHHHHhcc--------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC
Confidence 64 3455788889888853 467777778899999999964 3466789999999999842100 0 001
Q ss_pred CCC-C--CCC-CcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 LGL-S--LFR-PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDL-s--~l~-~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..+ + ..+ -.+++.|+.|.||.+=..+|+++..++.+..+.
T Consensus 216 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~ 259 (386)
T PRK07550 216 HDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIE 259 (386)
T ss_pred cchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHH
Confidence 111 1 111 246789999998841124899988776655443
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=121.65 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=133.7
Q ss_pred CceecccCCCC----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc------CCCCCCCc
Q 002866 149 PKVCLDYCGFG----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL------NIPENEYG 218 (872)
Q Consensus 149 ~~IYLDyAAtg----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL------gA~~dEY~ 218 (872)
+.+.|+.|--. +.|+.+++++.+ .+. ....|+.+ .-..+.|+.||+++ +++++ +
T Consensus 147 ~~i~l~~G~p~~~~~~~p~~~~~~~~~-------~~~----~~~~Y~~~---~G~~~lReaia~~~~~~~~~~~~~~--~ 210 (517)
T PRK13355 147 HILKLNIGNPAPFGFRTPDEVVYDMAQ-------QLT----DTEGYSDS---KGLFSARKAIMQYAQLKGLPNVDVD--D 210 (517)
T ss_pred CeEEecCcCCCcCCCCCCHHHHHHHHH-------Hhh----cCCCCCCC---cChHHHHHHHHHHHHhcCCCCCChh--H
Confidence 47888876553 236667776432 111 11234433 22568999999998 67776 5
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccC
Q 002866 219 LVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 219 VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~ 297 (872)
|++|+|+++|+.+++..+ ..+||+|++..- .+. .+...++..|+++..++.+.. +..++.++|++++..
T Consensus 211 I~it~G~~eal~~~~~~l-~~~Gd~Vli~~P-~y~---~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----- 280 (517)
T PRK13355 211 IYTGNGVSELINLSMSAL-LDDGDEVLIPSP-DYP---LWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS----- 280 (517)
T ss_pred EEEeCcHHHHHHHHHHHh-CCCCCEEEEcCC-CCc---CHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc-----
Confidence 999999999999999887 578999886531 122 233445667999998887643 345788999887742
Q ss_pred CCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCCCccCCCCCCCCcE---EEEcccccC
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKDMDSLGLSLFRPDF---IITSFYRVF 366 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~mipLDLs~l~~DF---lv~S~HK~f 366 (872)
+|+++.+..-+|.||.++|.+ ++..|++++++|++|-+-. -+.. ...+..+.+|. ++.|+-|.|
T Consensus 281 ---~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~--~~s~~~~~~~~~vi~~~S~SK~~ 355 (517)
T PRK13355 281 ---RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE--HTSIASLAPDLFCVTFSGLSKSH 355 (517)
T ss_pred ---CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC--cccHHHhCCCCeEEEEecchhhc
Confidence 588999999999999999953 3567899999999999831 1211 12222233453 236888988
Q ss_pred CCCCCc--eEEEEEe
Q 002866 367 GFDPTG--FGCLLIK 379 (872)
Q Consensus 367 G~~PtG--vG~LyVR 379 (872)
+. .| +|.+++.
T Consensus 356 ~~--~G~RiG~~i~~ 368 (517)
T PRK13355 356 MI--AGYRIGWMILS 368 (517)
T ss_pred cC--cccceEEEEee
Confidence 74 35 6777753
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=120.51 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=120.1
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ | +++++ .|++|+|+++|+.+++..+ +++||+|++.. ..+... ...++..|+++..+|
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~~-~i~vt~G~~~al~~~~~~~-~~~gd~Vlv~~-P~y~~~---~~~~~~~g~~~~~v~ 149 (394)
T PRK05942 76 ASFRQAITDWYHRRYGVELDPDS-EALPLLGSKEGLTHLALAY-VNPGDVVLVPS-PAYPAH---FRGPLIAGAQIYPII 149 (394)
T ss_pred HHHHHHHHHHHHHHHCCCcCCCC-eEEEccChHHHHHHHHHHh-CCCCCEEEEcC-CCCcch---HHHHHHcCCEEEEee
Confidence 46888888877 4 34431 4889999999999999887 68899987652 222322 233456799999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKD 344 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~ 344 (872)
++.. +..++.+++++.+.. +++++.++..+|.||..+|.+ ++..|+++++++++|.+-. . +..
T Consensus 150 ~~~~~~~~~d~~~l~~~~~~--------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~ 221 (394)
T PRK05942 150 LKPENDWLIDLSSIPEEVAQ--------QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQ 221 (394)
T ss_pred cCCccCCccCHHHHHHhccc--------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC
Confidence 8643 235888998877742 588999988899999999964 3456799999999999832 1 110
Q ss_pred Ccc-CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 345 MDS-LGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mip-LDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..+ .++.. ....+++.|+=|.||.+.-.+|+++..++.++.+.
T Consensus 222 ~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 222 PTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLR 266 (394)
T ss_pred CCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHH
Confidence 001 11211 12346678888999842233899998877766554
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=118.09 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=118.9
Q ss_pred HHHHHHHHHh----cCCC--CCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDH----LNIP--ENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~l----LgA~--~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.|+++ +|++ ++ ..|++|+|+|+|+.+++.++ ..+||+|++..- .+... ...++..|+++..++
T Consensus 64 ~~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p-~y~~~---~~~~~~~g~~~~~~~ 137 (387)
T PRK07777 64 PELRAAIAAQRRRRYGLEYDPD-TEVLVTVGATEAIAAAVLGL-VEPGDEVLLIEP-YYDSY---AAVIAMAGAHRVPVP 137 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCC-Cchhh---HHHHHHCCCEEEEee
Confidence 3566666654 5654 33 15999999999999988887 478999876532 23333 234556799999888
Q ss_pred ccCC--CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CC
Q 002866 274 FKWP--TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 274 vd~p--~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
++.. +..++.++|++++.. ++++|.++..+|.||..+|.+ +++.|+++++++++|.+... +.
T Consensus 138 ~~~~~~~~~~d~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 209 (387)
T PRK07777 138 LVPDGRGFALDLDALRAAVTP--------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA 209 (387)
T ss_pred cCCccCCCcCCHHHHHHhcCc--------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence 8643 245788988887742 478999999999999999854 34677899999999988531 21
Q ss_pred CCccCC-CCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 344 DMDSLG-LSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mipLD-Ls~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...++. +.. .+.++++.|+.|.||. | | +|+++..+.+++.+.
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~g~-~-GlRiG~~~~~~~l~~~~~ 255 (387)
T PRK07777 210 RHLPLATLPGMRERTVTISSAAKTFNV-T-GWKIGWACGPAPLIAAVR 255 (387)
T ss_pred CcccHhhCCCCcCcEEEEeechhhccC-c-CceeEEEecCHHHHHHHH
Confidence 101221 111 3468999999999984 3 6 688887766555443
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=117.34 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH-HHHHHHHhhCCCC--CCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRG-SAFKLLAESYPFH--TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnAT-eALnLVaeslpf~--~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+..+.-+.+++++|++.-+ ..++++++| .++-++..++..+ +|+.|+++.. .|.++. ..+.-.|++++++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~-th~S~~---kAi~~~G~~pv~V 178 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRI-DQKSCI---KAISTAGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECc-ChHHHH---HHHHHcCCeEEEe
Confidence 456778888999999997433 478899999 6877777666532 5788776643 356554 3445579999999
Q ss_pred ec--cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc-CcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC
Q 002866 273 WF--KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS-RVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 273 pv--d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS-NvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
+. +.++..+++++|+++|... ++++.++++...+ ..+|..-|++. .+.|+++|+++|+|+|+..+.. ...
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~-----~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~-~~~ 252 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEI-----GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN-KYM 252 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhc-----cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-hhh
Confidence 94 5556889999999999742 1234555554433 44568889974 5678999999999999886541 111
Q ss_pred CC--C--CC-CCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 349 GL--S--LF-RPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 349 DL--s--~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+ . .. .+|.+++|+||+|.. |.+.|++++++.
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~-pg~Gg~I~~~d~ 289 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMV-PVGGAIIYSFDE 289 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCC-CCCEEEEEECCH
Confidence 11 1 12 479999999999887 778777777553
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-10 Score=122.17 Aligned_cols=169 Identities=13% Similarity=0.162 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
.+.|+.+|+++|++++ .|++|+|+++++.+++..+ .++| +.|++.. ++...+...++..|+++..+|.+. +
T Consensus 60 ~~l~~~~a~~~g~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~----P~y~~y~~~~~~~G~~~~~v~~~~-~ 131 (351)
T PRK01688 60 KAVIENYAAYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCP----PTYGMYSVSAETIGVEIRTVPTLD-N 131 (351)
T ss_pred HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcC----CCHHHHHHHHHHcCCEEEEeecCC-C
Confidence 5789999999999887 5999999999999999987 4676 7777652 223334556777899999999864 4
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHH--HCCcEEEeeccc--cCCCCCccCCC-CC
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQ--QNHWHVLLDAGS--LGPKDMDSLGL-SL 352 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Ar--e~G~~VLVDAAQ--~aG~~mipLDL-s~ 352 (872)
..++.+++++++. +++++.++.-+|.||+.++.+.+. .++ +.+++|++|.+. +.+.. ..+++ ..
T Consensus 132 ~~~d~~~l~~~~~---------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~-s~~~~~~~ 201 (351)
T PRK01688 132 WQLDLPAIADNLD---------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQA-SLAGWLAE 201 (351)
T ss_pred CCCCHHHHHHhcc---------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCC-ChHHHHhh
Confidence 6788888877652 488999999999999999987543 232 125789999993 22210 01111 22
Q ss_pred CCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccccC
Q 002866 353 FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~P 388 (872)
.+-=+++-|+.|+|| ..| +|.++..++.++.+..
T Consensus 202 ~~n~iv~rSfSK~~g--laGlRiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 202 YPHLVILRTLSKAFA--LAGLRCGFTLANEEVINLLLK 237 (351)
T ss_pred CCCEEEEecchHhhc--CHHHHHhHHhCCHHHHHHHHh
Confidence 223378889999999 447 5999998888776653
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-09 Score=117.26 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCC------CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLNI------PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLgA------~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..++|+.|+++++. +++ +|++|+|+|+|+.+++.++. ++|++|++.. .. ...+...++..|+++..+
T Consensus 75 ~~~lr~~ia~~l~~~~~~~~~~~--~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~-p~---y~~~~~~~~~~g~~~~~~ 147 (403)
T TIGR01265 75 ALAAREAVAEYLSSDLPGKLTAD--DVVLTSGCSQAIEICIEALA-NPGANILVPR-PG---FPLYDTRAAFSGLEVRLY 147 (403)
T ss_pred CHHHHHHHHHHHHhhcCCCCCHH--HEEEecChHHHHHHHHHHhC-CCCCEEEEeC-CC---chhHHHHHHHcCCEEEEe
Confidence 45789999999985 344 59999999999999999985 7899987652 12 223345567789999998
Q ss_pred eccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeecccc--CCCCC
Q 002866 273 WFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSL--GPKDM 345 (872)
Q Consensus 273 pvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~--aG~~m 345 (872)
+++. .+..++.+++++++.. +++++.+++.+|.||..+|. + ++..|+++|+++++|.+.. .-...
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~--------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~ 219 (403)
T TIGR01265 148 DLLPEKDWEIDLDGLEALADE--------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA 219 (403)
T ss_pred cCCcccCCccCHHHHHHHhCc--------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC
Confidence 8743 2356888999887742 47899999999999999984 3 4567899999999999942 11100
Q ss_pred ccCCCCCCCC---cEEEEcccccCCCCC-CceEEEEEe
Q 002866 346 DSLGLSLFRP---DFIITSFYRVFGFDP-TGFGCLLIK 379 (872)
Q Consensus 346 ipLDLs~l~~---DFlv~S~HK~fG~~P-tGvG~LyVR 379 (872)
....+..+.. =.++.|+-|.|+. | ..+|++++.
T Consensus 220 ~~~~~~~~~~~~~vi~~~S~SK~~~~-pGlRiG~~v~~ 256 (403)
T TIGR01265 220 PFIPMASFASIVPVLSLGGISKRWVV-PGWRLGWIIIH 256 (403)
T ss_pred CccchhhhccCCcEEEEeecccccCC-CcceEEEEEEe
Confidence 0112222222 2567899998875 3 237777764
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=117.65 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|+.||++++ +++++ +|++|+|+++|+.+++..+ .++|+.|++..- .+. .+...++..|+++..+
T Consensus 59 ~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~l-~~~gd~vl~~~p-~y~---~~~~~~~~~g~~~~~~ 132 (378)
T PRK07682 59 LLELRQEIAKYLKKRFAVSYDPND-EIIVTVGASQALDVAMRAI-INPGDEVLIVEP-SFV---SYAPLVTLAGGVPVPV 132 (378)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCChHHHHHHHHHHh-CCCCCEEEEeCC-Cch---hhHHHHHHcCCEEEEe
Confidence 3468888888874 34432 5999999999999999887 578999887632 222 2334456679999888
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC-C--
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-D-- 344 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~-- 344 (872)
+.+.. +..++.++|++++.. +++++.++..+|.||..+|.+ ++..|+++++++++|.+..... +
T Consensus 133 ~~~~~~~~~~d~~~l~~~~~~--------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 204 (378)
T PRK07682 133 ATTLENEFKVQPAQIEAAITA--------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA 204 (378)
T ss_pred ecCCccCCCCCHHHHHhhcCc--------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC
Confidence 87532 346788989887742 478888888899999999864 3456789999999999954211 0
Q ss_pred Ccc-CCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 345 MDS-LGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mip-LDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
..+ ..+.. ..-.+++.|+-|.||. .| +|+++..+++++.+.
T Consensus 205 ~~~~~~~~~~~~~~i~~~S~SK~~~~--~GlR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 205 YTSFASIKGMRERTILISGFSKGFAM--TGWRLGFIAAPVYFSEAML 249 (378)
T ss_pred CCChhhcccccCCEEEEecCcccccC--hhhhhhhhhcCHHHHHHHH
Confidence 001 11111 2346899999999984 37 899998887766554
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.5e-09 Score=110.50 Aligned_cols=174 Identities=13% Similarity=0.094 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec-cCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-KWPT 278 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-d~p~ 278 (872)
.+--+.+|+|||++. +-+|.||.+|=-.|.+++- ++||-|+....-+..+. -.|++.|.+|..+|- ..|.
T Consensus 64 ~~F~~dlaeFlg~D~----~R~t~GARe~KfavMhal~-~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 64 KDFLEDLAEFLGMDE----VRVTAGAREAKFAVMHALC-KEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred HHHHHHHHHHhCCce----eeecccchhhHHHHHHHhc-cCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCc
Confidence 344455999999963 7899999999999999885 67888776543222322 247888999999985 3456
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcE
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DF 357 (872)
-.|+++...+.|..-+. .......|..++|+...-|.+.+.+ ..+.|+++|+.+||.+|-.+|. +|++...+++||
T Consensus 135 y~i~~e~y~~viee~~~-~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Gr--mpvs~ke~g~DF 211 (382)
T COG1103 135 YKITPEGYAEVIEEVKD-EGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGR--MPVSGKEIGADF 211 (382)
T ss_pred eEecHHHHHHHHHHHHh-ccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecc--ccccccccCCCE
Confidence 67899988887765332 1223578999999999999999997 5678899999999999999997 799999999999
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
++.|+||-+.+ -.=+|+|-++.++.+.+
T Consensus 212 iVgSGHKsmAA-s~PiGvl~~~eE~ae~V 239 (382)
T COG1103 212 IVGSGHKSMAA-SAPIGVLAMSEEWAEIV 239 (382)
T ss_pred EEecCccchhc-cCCeeEEeehhHHHHHH
Confidence 99999996553 22389999999887654
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-09 Score=116.55 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENE-YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dE-Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
.+.+.+.+.+.+++|++.+. ..|++|+|+|+|+.+++.++ ..+||.|++.. ..+.++. ..++..|+++..++++
T Consensus 71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~-p~y~~~~---~~~~~~g~~~~~~~~~ 145 (386)
T PRK09082 71 ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL-VRPGDEVIVFD-PSYDSYA---PAIELAGGRAVRVALQ 145 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH-cCCCCEEEEeC-CCchhhH---HHHHHcCCEEEEEecC
Confidence 44555666666677875432 25999999999999999887 47899988653 2344443 3345579999999997
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCC-Cc
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKD-MD 346 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~-mi 346 (872)
..+..++.+++++++.. +++++.++..+|.||..++.+ +++.|+++++++++|.+-. .+.. ..
T Consensus 146 ~~~~~~d~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s 217 (386)
T PRK09082 146 PPDFRVDWQRFAAAISP--------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHAS 217 (386)
T ss_pred cccccCCHHHHHHhcCc--------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCC
Confidence 54567888999887742 478999999999999997764 3567899999999999842 1110 00
Q ss_pred cCCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 347 SLGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...+.. .+..+++.|+-|.||. .| +|+++..+++++.+.
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~~~--~G~RiG~iv~~~~l~~~~~ 259 (386)
T PRK09082 218 VLRHPELRERAFVVSSFGKTYHV--TGWKVGYCVAPAALSAEFR 259 (386)
T ss_pred hhhCcCccCcEEEEeechhhccc--hhhhhhhhhCCHHHHHHHH
Confidence 112211 2356889999999984 36 688887766655443
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=116.70 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=119.3
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVFTs 223 (872)
.+-+|.++++++|..+++++.+ .+...-.....|+.+ .-+.+.|+.||++++ ++++ +|++|+
T Consensus 78 ~~i~~~~~~~~~P~~~~~~~~~-------~~~~~~~~~~~Y~~~---~G~~~LR~aia~~~~~~~g~~~~~~--~I~it~ 145 (481)
T PTZ00377 78 FLLEDPSVSSLFPADVVARAKE-------YLNAIGGGTGAYTDS---AGYPFVRKAVAAFIERRDGVPKDPS--DIFLTD 145 (481)
T ss_pred hhhcCccccccCCHHHHHHHHH-------HHHhCCCcccCcCcc---cCCHHHHHHHHHHHHHhcCCCCChh--hEEEcC
Confidence 3456777889999888887432 111110011124332 234578889998875 4555 599999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCCc
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
|+++|+.+++..+-..+||.|++.. +........++..|++++.++++.. +..++.++|++.+....+ ...++
T Consensus 146 Ga~~al~~~~~~l~~~~gD~Vlv~~----P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~ 219 (481)
T PTZ00377 146 GASSGIKLLLQLLIGDPSDGVMIPI----PQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVR--NGITP 219 (481)
T ss_pred CHHHHHHHHHHHhccCCCCEEEECC----CCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHh--cCCCe
Confidence 9999999999987436899988752 2222344556678999999998743 346889999998864211 12258
Q ss_pred eEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc
Q 002866 303 GLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA 338 (872)
+++.+..-+|.||..++.+ ++..|++++++++.|-+
T Consensus 220 k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~ 259 (481)
T PTZ00377 220 RALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEV 259 (481)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehh
Confidence 8888888899999999964 34667899999999988
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=114.93 Aligned_cols=172 Identities=12% Similarity=0.142 Sum_probs=119.9
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
+.|+.|++++ | ++++ ..|++|+|+|+|+.+++.++ .++||+|++.. ..+. .+...++..|++++.+++
T Consensus 95 ~Lr~aia~~~~~~~g~~~~~~-~~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~-P~y~---~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 95 ELNSAIAERFKKDTGLVVDPE-KEVTVTSGCTEAIAATILGL-INPGDEVILFA-PFYD---SYEATLSMAGAKIKTVTL 168 (413)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CCEEEeCCHHHHHHHHHHHh-CCCCCEEEEeC-CCch---hHHHHHHHcCCEEEEEEC
Confidence 4666666655 4 4443 15999999999999998887 57899988763 2222 334456678999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC---CCCCcc
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG---PKDMDS 347 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a---G~~mip 347 (872)
+.++..++.++|++++.. +++++.++..+|.||..++.+ ++..|+++++++++|-+-.. .....+
T Consensus 169 ~~~~~~~~~~~l~~~~~~--------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s 240 (413)
T PLN00175 169 RPPDFAVPEDELKAAFTS--------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHIS 240 (413)
T ss_pred CcccCCCCHHHHHHhcCc--------CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccC
Confidence 754467888999887742 488999999999999999865 34567899999999998321 110011
Q ss_pred -CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 -LGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 -LDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
..+.. ....+++.|+=|.||.+=.-+|+++..+.++..+
T Consensus 241 ~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l 281 (413)
T PLN00175 241 MASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 281 (413)
T ss_pred hhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHH
Confidence 11211 2345788999999985112379888777665444
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=111.42 Aligned_cols=218 Identities=12% Similarity=0.155 Sum_probs=141.6
Q ss_pred hHHHHHhhcccCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCC
Q 002866 135 KIDQLRANEYLHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIP 213 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~ 213 (872)
....+++ .|.. ...+.|+.+-... +|+.+++++.+ .+. . ...|..+. ..+.|+.||+++|++
T Consensus 18 ~~~~~~~-~~~~-~~~i~l~~nen~~~~~~~v~~a~~~-------~~~-~---~~~Yp~~g----~~~Lr~aia~~~~~~ 80 (366)
T PRK01533 18 SPEQMKE-VYGD-HSFVKLASNENPFGCSPRVLDELQK-------SWL-D---HALYPDGG----ATTLRQTIANKLHVK 80 (366)
T ss_pred ChHHHHH-hcCC-CceEEeCCCCCCCCCCHHHHHHHHH-------HHH-h---cCcCCCCC----HHHHHHHHHHHhCCC
Confidence 3444443 2432 3478888766553 45667776432 111 1 12342222 357999999999998
Q ss_pred CCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhh
Q 002866 214 ENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSK 293 (872)
Q Consensus 214 ~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~ 293 (872)
++ .|++|+|+++++.+++..+ .++|+.|++.. ++.......++..|+++..+|.+. ..++.++|++++..
T Consensus 81 ~~--~I~vt~Gs~e~i~~~~~~l-~~~gd~vlv~~----P~y~~~~~~~~~~g~~v~~v~~~~--~~~d~~~l~~~~~~- 150 (366)
T PRK01533 81 ME--QVLCGSGLDEVIQIISRAV-LKAGDNIVTAG----ATFPQYRHHAIIEGCEVKEVALNN--GVYDLDEISSVVDN- 150 (366)
T ss_pred cc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEcC----CcHHHHHHHHHHcCCEEEEeecCC--CCcCHHHHHHHhCc-
Confidence 87 4999999999999999987 47899987652 233344556777899999999863 46889999887742
Q ss_pred hccCCCCCceEEEEeCccCcccchhcHHHHH----HHHHCCcEEEeecccc--CCC-CC-ccCC-CCCCCCcEEEEcccc
Q 002866 294 KRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA----LAQQNHWHVLLDAGSL--GPK-DM-DSLG-LSLFRPDFIITSFYR 364 (872)
Q Consensus 294 ~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~----~Are~G~~VLVDAAQ~--aG~-~m-ipLD-Ls~l~~DFlv~S~HK 364 (872)
+++++.++.-+|.||+++|.+.+. .|++++ .+++|-+-. ... .. -.+. +...+--+++.|+=|
T Consensus 151 -------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK 222 (366)
T PRK01533 151 -------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSK 222 (366)
T ss_pred -------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchH
Confidence 478999999999999999997543 234455 567787732 210 00 0111 112223478899999
Q ss_pred cCCCCCCceEEEEEeCCCccccc
Q 002866 365 VFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 365 ~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.||.+=--+|.++..+++++.+.
T Consensus 223 ~~~l~GlRiG~~i~~~~~~~~l~ 245 (366)
T PRK01533 223 AYGLASFRVGYAVGHEELIEKLN 245 (366)
T ss_pred HhcChHHHHhHHhCCHHHHHHHH
Confidence 99841122688877666655543
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=111.70 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....+.++++|+++|.+ + .++|++| ++|...++..+ .+.+++.|++. .++|.++.... +..|+++..++.
T Consensus 91 ~~~~~l~~~la~~~g~~-~--~~~~~sG-~~an~~ai~~l~~~~~~~~i~~~-~~~h~s~~~~~---~~~~~~~~~~~~- 161 (407)
T PRK09064 91 HYHVELERELADLHGKE-A--ALVFTSG-YVSNDATLSTLAKLIPDCVIFSD-ELNHASMIEGI---RRSRCEKHIFRH- 161 (407)
T ss_pred HHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHHhCCCCCCEEEEe-CcchHHHHHHH---HHcCCcEEEECC-
Confidence 46778999999999952 2 3666655 44544333332 23345444443 56677764322 335777654432
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC-CCc--c----
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK-DMD--S---- 347 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~-~mi--p---- 347 (872)
.+.+++++++... ..+++++|++..+.|++|.+.|++. .+.|+++|+++++|.+|..|. ... .
T Consensus 162 -----~d~~~le~~l~~~----~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~ 232 (407)
T PRK09064 162 -----NDVAHLEELLAAA----DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAER 232 (407)
T ss_pred -----CCHHHHHHHHHhc----cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHh
Confidence 2568888887531 1135899999999999999999985 567899999999999997442 000 0
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.++. -.+|+++.++.|.||. .| |+++.+++.++.+
T Consensus 233 ~~~~-~~~div~~t~sKa~g~--~G-G~~~~~~~~~~~l 267 (407)
T PRK09064 233 DGLM-DRIDIIEGTLAKAFGV--MG-GYIAGSAALVDAV 267 (407)
T ss_pred cCCC-CCCeEEEEecchhhhc--cC-ceEecCHHHHHHH
Confidence 1221 2579999999999984 46 7776666655544
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-08 Score=114.67 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+...+++++||++++.. + .|+||+|.+ ++..++.++. ++||.|+.. ...|.++..-. .-.|.++++++.+
T Consensus 154 ~~~~~Lee~La~~~~~~-~--~i~~s~G~~-a~~sai~a~~-~~gd~Ii~d-~~~H~s~~~~~---~ls~~~~~~~~~n- 223 (481)
T PLN02822 154 DVHLDCETKIAKFLGTP-D--SILYSYGLS-TIFSVIPAFC-KKGDIIVAD-EGVHWGIQNGL---YLSRSTIVYFKHN- 223 (481)
T ss_pred HHHHHHHHHHHHHhCCC-C--EEEECCHHH-HHHHHHHHhC-CCCCEEEEe-CCccHHHHHHH---HHcCCeEEEECCC-
Confidence 56789999999999974 2 599998877 5666777774 678887755 34566664322 2246788877643
Q ss_pred CCCccCHHHHHHHHhhhhcc-CCCCCc-eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC---C--C--c
Q 002866 277 PTLKLCSTDLRKQISSKKRR-KKDSAA-GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK---D--M--D 346 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr-~~~~~T-~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~---~--m--i 346 (872)
+.++++..+....+. ...+++ ++|++..+.+.+|.+.|++ +++.|+++|+.+++|-++..|. . . .
T Consensus 224 -----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e 298 (481)
T PLN02822 224 -----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSE 298 (481)
T ss_pred -----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHH
Confidence 356666655432110 001234 7999999999999999997 4567899999999999987442 0 0 0
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+++....+|+++.|+.|-|| +.| |+++.+++.++.++
T Consensus 299 ~~~v~~~~~dii~~s~sKalg--~~G-G~i~g~~~ii~~~~ 336 (481)
T PLN02822 299 HFGVPIEKIDIITAAMGHALA--TEG-GFCTGSARVVDHQR 336 (481)
T ss_pred HcCCCCCCCeEEEecchhhhh--hCC-eEEEcCHHHHHHHH
Confidence 134433478999999999998 567 88887777766554
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=111.13 Aligned_cols=218 Identities=11% Similarity=0.084 Sum_probs=137.4
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|+|.++ .+..++.+++++.+ .+.. . ..+..+. ......++.++++++++.+.+ .|+
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~-------~~~~-~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~v~ 100 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKE-------QLAK-L---THFSLGFFYNEPAVELAELLLALTPEGLD--KVF 100 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHH-------HHHh-C---cCccCcccCCHHHHHHHHHHHHhCCCCCC--EEE
Confidence 4567888765 33356777776533 1211 1 1232221 135677899999999997555 599
Q ss_pred EeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHc---------CcEEEEEeccCC-----CCccCHHH
Q 002866 221 FTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEK---------GAKVYSAWFKWP-----TLKLCSTD 285 (872)
Q Consensus 221 FTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~Akrk---------GaeV~~Vpvd~p-----~g~Id~ed 285 (872)
||.++|+|+..++..+ .+..++.|++....-|.+........... +..+..+|.+.+ ....+.++
T Consensus 101 ~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 180 (413)
T cd00610 101 FVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEA 180 (413)
T ss_pred EcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHH
Confidence 9999999999887764 34567787765433355444433222111 223555554421 01225677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DF 357 (872)
|++++... ..++++|++..+.+.+|.+.| ++ +++.|+++|+++++|-++.. |.. ...++.....+|+
T Consensus 181 l~~~l~~~-----~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~ 255 (413)
T cd00610 181 LEEALEEH-----PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI 255 (413)
T ss_pred HHHHHhcC-----CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe
Confidence 77777532 125789999999999999998 76 45678999999999999753 110 0122333456898
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+++| |++|. +..+|+++.++++++.+
T Consensus 256 ~t~s--K~l~~-g~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 256 VTLG--KGLGG-GLPLGAVLGREEIMDAF 281 (413)
T ss_pred EEEc--ccccC-ccccEEEEEcHHHHHhh
Confidence 8776 99885 45589999888776654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=110.46 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=116.8
Q ss_pred HHHHHHHHHhcC-----CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHLN-----IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lLg-----A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
.+.|++||++++ ++++ .|++|+|+|+|+.+++..+. ++|+.|++.. +....+...++..|+++..+++
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~----P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 76 LSAREAIASYYHNPDGPIEAD--DVVLCSGCSHAIEMCIAALA-NAGQNILVPR----PGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HHHHHHHHHHHhhcCCCCCHH--HEEECcChHHHHHHHHHHhC-CCCCEEEEeC----CCChhHHHHHHHcCCEEEEeec
Confidence 468999999997 6665 59999999999999999874 6889887652 1222345567788999999887
Q ss_pred cCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCCC
Q 002866 275 KWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKDM 345 (872)
Q Consensus 275 d~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~m 345 (872)
+.. +..++.+.|++.+.. +++++.++.-+|.||+.++.+ +++.|+++|+++++|-+-. . +.
T Consensus 149 ~~~~~~~~d~~~l~~~~~~--------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-- 218 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLIDE--------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA-- 218 (401)
T ss_pred CCccCCCCCHHHHHHHhcc--------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--
Confidence 532 356888999877642 478899999999999999864 3466789999999999832 1 11
Q ss_pred ccCCCCCCCC---cEEEEcccccCCCCCCceEEEEEe
Q 002866 346 DSLGLSLFRP---DFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 346 ipLDLs~l~~---DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
....+..+.. =+++.|+=|.||.+=..+|++++.
T Consensus 219 ~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~ 255 (401)
T TIGR01264 219 TFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIH 255 (401)
T ss_pred ccccHHHcCCCCcEEEEccCcccCCCccceEEEEEec
Confidence 1122222222 267899999877521227777754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=112.23 Aligned_cols=218 Identities=15% Similarity=0.124 Sum_probs=142.3
Q ss_pred HHHHhhcccCC--C-CceecccCCC---CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc
Q 002866 137 DQLRANEYLHL--S-PKVCLDYCGF---GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL 210 (872)
Q Consensus 137 D~lR~~EFP~L--~-~~IYLDyAAt---gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL 210 (872)
..+++.-|..+ . +.+|+|.-.= +.++..|..+++. . ...|+... -+.+.|+.|++++
T Consensus 4 ~~l~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~-----------g---d~~Y~~~~---g~~~Leeaia~~~ 66 (431)
T cd00617 4 RALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMML-----------G---DEAYAGSK---SFYDLEDAVQDLF 66 (431)
T ss_pred HHHHHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHh-----------C---CCccCCCC---CHHHHHHHHHHHH
Confidence 34555555433 2 3677776443 4566666555321 1 12354322 2457899999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC---------CCcc
Q 002866 211 NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP---------TLKL 281 (872)
Q Consensus 211 gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p---------~g~I 281 (872)
|.+ .+++|+++|+|+.++...+ .++||.|+...-+. +. .......|++++.++++.. .+.+
T Consensus 67 g~~----~vv~t~~Gt~Al~la~~al-~~pGD~V~~~~~f~--~~---~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gni 136 (431)
T cd00617 67 GFK----HIIPTHQGRGAENILFSIL-LKPGRTVPSNMHFD--TT---RGHIEANGAVPVDLVIDEAHDAQELIPFKGNI 136 (431)
T ss_pred CCC----eEEEcCCHHHHHHHHHHHh-CCCCCEEccCCccc--ch---HHHHHhCCCEeEEEecccccccccccCCCCCc
Confidence 984 3999999999999988877 57899775321111 11 1223457999999988632 3558
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcHHH----HHHHHHCCcEEEeeccccCCCC---------Ccc
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQW----MALAQQNHWHVLLDAGSLGPKD---------MDS 347 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~---------mip 347 (872)
|.++|+++|..+ ...++++|++..-+|.+ |+..+.+. .+.|+++|++++.|+|+++... --.
T Consensus 137 D~e~Le~~I~~~----~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~ 212 (431)
T cd00617 137 DVAKLEKLIDEV----GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRD 212 (431)
T ss_pred CHHHHHHHhCcc----cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccC
Confidence 999999999742 12358899999999987 99998763 3567999999999999875310 001
Q ss_pred CCCCC------CCCcEEEEcccccCCCCCCceEEEEEeC-CCccccc
Q 002866 348 LGLSL------FRPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 348 LDLs~------l~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~ 387 (872)
..+.+ ...|.+++|+||-++. |. -|++..+. +++..++
T Consensus 213 ~si~ei~~e~~s~sd~~~mS~~K~~~~-~~-GG~i~~~d~~l~~~~~ 257 (431)
T cd00617 213 KSIAEIAREMFSYADGCTMSAKKDGLV-NI-GGFLALRDDELYEEAR 257 (431)
T ss_pred CCHHHHHHHhhccCCEEEEEeecCCCC-cc-ceEEEeCcHHHHHHHH
Confidence 11111 1489999999997776 33 23566665 3666555
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=110.90 Aligned_cols=164 Identities=11% Similarity=0.114 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcC------------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCc
Q 002866 200 HDIKTRIMDHLN------------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 200 eeARerIA~lLg------------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
.+.|+.||++++ ++++ .|++|+|+++|+.+++..+ .++||+|++..- .+. .+...++..|+
T Consensus 78 ~~Lr~aia~~~~~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P-~y~---~~~~~~~~~g~ 150 (412)
T PTZ00433 78 PEAREAVATYWRNSFVHKESLKSTIKKD--NVVLCSGVSHAILMALTAL-CDEGDNILVPAP-GFP---HYETVCKAYGI 150 (412)
T ss_pred HHHHHHHHHHHHhhccccccccCCCChh--hEEEeCChHHHHHHHHHHh-cCCCCEEEEccC-Ccc---cHHHHHHHcCC
Confidence 468999999886 4555 5999999999999999987 478999876532 122 23445677899
Q ss_pred EEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--
Q 002866 268 KVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-- 340 (872)
Q Consensus 268 eV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-- 340 (872)
++..+|++.. +..++.++|++.+.. +++++.+++-+|.||..++.+ +++.|+++|+++++|-+-.
T Consensus 151 ~~~~i~~~~~~~~~~d~~~l~~~~~~--------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 151 EMRFYNCRPEKDWEADLDEIRRLVDD--------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGM 222 (412)
T ss_pred EEEEEecCccccCcCCHHHHHHHhcc--------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 9999998532 346788988877642 478899999999999999964 2456789999999999842
Q ss_pred C--CCCCcc-CCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 341 G--PKDMDS-LGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 341 a--G~~mip-LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
. +....+ ..+.....=.++.|+=|.||.+=..+|.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 223 VFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred ccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence 1 110000 1111111226778999988752234777775
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=112.10 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+.+++||+++|.+ + .|+|++| ++|+..++..+. ..+|+.|++. ..+|.+.. ..++..|+++..++.+
T Consensus 92 ~~~~Le~~la~~~g~~-~--~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~-~~~h~s~~---~~~~~~g~~~~~~~~~- 162 (410)
T PRK13392 92 PHVLLERELADLHGKE-S--ALLFTSG-YVSNDAALSTLGKLLPGCVILSD-ALNHASMI---EGIRRSGAEKQVFRHN- 162 (410)
T ss_pred HHHHHHHHHHHHhCCC-C--EEEECcH-HHHHHHHHHHHhcCCCCCEEEEe-hhhhHHHH---HHHHHcCCeEEEEeCC-
Confidence 4568899999999963 2 5777776 555555554432 2467766654 33566553 2345678888776532
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc--------
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS-------- 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip-------- 347 (872)
+.+++++.+... ..++|++|++.+.+|+||.+.|++. ...|+++++++++|.++..|.- .+
T Consensus 163 -----d~~~l~~~l~~~----~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~ 232 (410)
T PRK13392 163 -----DLADLEEQLASV----DPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLY-GARGGGIAER 232 (410)
T ss_pred -----CHHHHHHHHHhc----cCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCc-CCCCCchhhh
Confidence 456676666532 2246899999999999999999975 5678999999999999885420 01
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.++. -++|+++.|+.|.||. | | |++..+++.++.+
T Consensus 233 ~~~~-~~~div~~tlsK~~g~-~-G-G~~~~~~~~~~~l 267 (410)
T PRK13392 233 DGLM-DRIDMIQGTLAKAFGC-L-G-GYIAASADLIDFV 267 (410)
T ss_pred ccCC-CCCcEEEEEChHhhhc-c-c-chhhcCHHHHHHH
Confidence 0111 2578999999999996 3 4 6665565555443
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-08 Score=107.57 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=126.9
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCc-CcCCC-chHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHA-LYGGA-EKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~-~ygNp-sS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
..|..|...++ ..+.+++++.+ .+. ...... ...+. .......+..+++|+++|++ ..++|++|+
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~-------~~~-~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~---~~~~~~SG~- 115 (406)
T PRK13393 48 TVWCSNDYLGMGQHPAVLAAMHE-------ALD-TCGAGAGGTRNISGTNHYHVLLEAELADLHGKE---AALLFTSGY- 115 (406)
T ss_pred EEeecccccCCCCCHHHHHHHHH-------HHH-HcCCCCcccccccCChHHHHHHHHHHHHHhCCC---cEEEeCCcH-
Confidence 45777777787 45667777543 121 110000 00000 01245678999999999973 246666665
Q ss_pred HHHHHHHhhCCC-CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 227 SAFKLLAESYPF-HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 227 eALnLVaeslpf-~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
+|+..+...+.. .+|+.|++. +.+|.++.... +..|+++..++. .+.+++++++... ...++++|
T Consensus 116 ~An~~ai~~l~~~~~g~~I~~~-~~~H~s~~~~~---~~~g~~~~~~~~------~d~~~l~~~l~~~----~~~~~~~v 181 (406)
T PRK13393 116 VSNWAALSTLGSRLPGCVILSD-ELNHASMIEGI---RHSRAEKRIFRH------NDPADLERKLSDL----DPHRPKLV 181 (406)
T ss_pred HHHHHHHHHhhcCCCCCEEEEc-cchhHHHHHHH---HHcCCeEEEeCC------CCHHHHHHHHHhc----cCCCCEEE
Confidence 566655554432 256655554 45677765433 335777776653 2567788777532 12357899
Q ss_pred EEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC--------CCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 306 VFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL--------GLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL--------DLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++.+++|++|.++|++. .+.|+++|+.+++|.+|..|. .-+. ++. -.+|.++.++=|.||. .| |++
T Consensus 182 ~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~-~g~~G~g~~~~~~~~-~~~~i~~~tlsKa~g~--~G-G~~ 256 (406)
T PRK13393 182 AFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGL-YGPRGGGIAEREGLA-DRLTIIEGTLAKAFGV--MG-GYI 256 (406)
T ss_pred EEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCchhhhcCCC-CCCeEEEEeCchhhcc--cC-cee
Confidence 99999999999999985 567899999999999997543 0011 111 1368888899999884 24 555
Q ss_pred EEeCCCcccc
Q 002866 377 LIKKSVMGSL 386 (872)
Q Consensus 377 yVRk~~i~~L 386 (872)
..+++.++.+
T Consensus 257 ~~~~~~~~~l 266 (406)
T PRK13393 257 TGSAALCDFI 266 (406)
T ss_pred eCCHHHHHHH
Confidence 5455544443
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=111.54 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=120.0
Q ss_pred HHHHHHHHHhc----C---CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 200 HDIKTRIMDHL----N---IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lL----g---A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
...|+.||+++ | +++++ .|++|+|+++|+.+++..+. .+|+.|++..- +.......++..|+++..+
T Consensus 84 ~~lr~aia~~~~~~~g~~~~~~~~-~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P----~y~~~~~~~~~~g~~v~~v 157 (410)
T PRK06290 84 QEFKEAAARYMEKVFGVKDIDPVT-EVIHSIGSKPALAMLPSCFI-NPGDVTLMTVP----GYPVTGTHTKYYGGEVYNL 157 (410)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCcc-eEEEccCHHHHHHHHHHHhC-CCCCEEEEeCC----CCccHHHHHHHcCCEEEEE
Confidence 46788888875 4 44532 59999999999999998874 78999876531 2222344567789999999
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CC
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
|++.. ...++.+++++.+.. +++++.++.-+|.||+++|.+ ++..|+++++++++|-+-.- +.
T Consensus 158 ~~~~~~~~~~d~~~l~~~~~~--------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~ 229 (410)
T PRK06290 158 PLLEENNFLPDLDSIPKDIKE--------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK 229 (410)
T ss_pred ecCCCcCCcCCHHHHHHhhcc--------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC
Confidence 98743 244678888776642 478888887899999999974 34667899999999998431 11
Q ss_pred CCcc-CCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 344 DMDS-LGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~mip-LDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
..+ +.+.. .+.+.++.|+=|.||. .| +|+++..+..+..+
T Consensus 230 -~~s~~~~~~~~~~~I~i~SfSK~~g~--~GlRiG~ii~~~~l~~~l 273 (410)
T PRK06290 230 -PLSFLSVPGAKEVGVEIHSLSKAYNM--TGWRLAFVVGNELIVKAF 273 (410)
T ss_pred -CcChhcCCCccccEEEEeechhhcCC--chhheEeEEeCHHHHHHH
Confidence 011 12221 2467999999999984 36 79888766655444
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-08 Score=109.86 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.|+++++ ++++ +|++|+|+|+|+.+++..+ .++||+|++.. ..+... ...++..|+++..++
T Consensus 76 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~-p~y~~~---~~~~~~~g~~~~~i~ 148 (409)
T PLN02656 76 PQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSML-ARPGANILLPR-PGFPIY---ELCAAFRHLEVRYVD 148 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCCcc--cEEEeCChHHHHHHHHHHH-hCCCCeEEEeC-CCCCcH---HHHHHHcCCEEEEEe
Confidence 468888888874 4554 5999999999999999887 47899987653 223322 233455799999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKD 344 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~ 344 (872)
++.. +..++.+++++++.. +++++.+++-+|.||.+++.+ ++..|+++++++++|.+-. . +..
T Consensus 149 ~~~~~~~~~d~~~l~~~~~~--------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (409)
T PLN02656 149 LLPEKGWEVDLDAVEALADQ--------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNP 220 (409)
T ss_pred CCCcCCCCCCHHHHHHHhcc--------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 8532 346888998877742 478899999999999998764 3567799999999999932 1 210
Q ss_pred CccC-CCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 345 MDSL-GLSLFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 345 mipL-DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
..++ .+.....=+++.|+=|.|+.+=--+|+++..
T Consensus 221 ~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~ 256 (409)
T PLN02656 221 FVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTT 256 (409)
T ss_pred cccHHHhcccCcEEEEcccchhccCcceeEEEEEEe
Confidence 0111 0111122367888999877521337777653
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-08 Score=107.23 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=133.0
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.+.|+-+-... .|+.+++++.+ .. ..+ ..|+.+. ..+.|++||++++++++ +|++|+|++++
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~-------~~-~~~---~~Y~~~~----~~~Lr~~ia~~~~~~~~--~I~it~G~~~~ 96 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMRE-------AA-AEI---WKYGDPE----NHDLRHALAAHHGVAPE--NIMVGEGIDGL 96 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHH-------HH-HHh---hcCCCCc----cHHHHHHHHHHhCCCHH--HEEEcCCHHHH
Confidence 45777664443 45667776432 11 111 2355443 45899999999999876 59999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+.++...+ .++|+.|++..- .+... ...++..|+++..+|++.. .++.+++.+.+.. .+++++.++
T Consensus 97 l~~~~~~~-~~~gd~vlv~~p-~y~~~---~~~~~~~g~~~~~vp~~~~--~~~~~~l~~~~~~-------~~~~~i~l~ 162 (369)
T PRK08153 97 LGLIVRLY-VEPGDPVVTSLG-AYPTF---NYHVAGFGGRLVTVPYRDD--REDLDALLDAARR-------ENAPLVYLA 162 (369)
T ss_pred HHHHHHHh-cCCCCEEEECCC-cchHH---HHHHHHcCCeEEEeeCCCC--CCCHHHHHHHhcc-------cCCcEEEEe
Confidence 99999876 368998887521 22222 2334557999999998642 3677777655532 357899888
Q ss_pred CccCcccchhcHHHH-HHHH--HCCcEEEeecccc-CCCCCccCCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 309 VQSRVTGAKYSYQWM-ALAQ--QNHWHVLLDAGSL-GPKDMDSLGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 309 ~vSNvTG~i~PLe~I-~~Ar--e~G~~VLVDAAQ~-aG~~mipLDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
.-+|.||+++|.+.+ ..++ ++++++++|-+-. ...+-....+.. .+--+++.|+=|.||. .| +|+++..++
T Consensus 163 ~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~--~GlRiG~~v~~~~ 240 (369)
T PRK08153 163 NPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGL--AGARVGYAIGAPG 240 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccC--cchheeeeecCHH
Confidence 899999999999743 3332 3488999999832 111000111221 2223778999999984 26 688887766
Q ss_pred Cccccc
Q 002866 382 VMGSLQ 387 (872)
Q Consensus 382 ~i~~L~ 387 (872)
.++.+.
T Consensus 241 ~~~~l~ 246 (369)
T PRK08153 241 TIKAFD 246 (369)
T ss_pred HHHHHH
Confidence 655443
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=111.88 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
....|+.||++++ ++++ +|++|+|+++|+.+++.++ .++||+|++..- ........++..|++++.+
T Consensus 110 ~~~lR~aiA~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P----~y~~y~~~~~~~g~~~~~~ 182 (462)
T PLN02187 110 ILPARRAVADYMNRDLPHKLTPE--DIFLTAGCNQGIEIVFESL-ARPNANILLPRP----GFPHYDARAAYSGLEVRKF 182 (462)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcc--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCC----CCccHHHHHHHcCCEEEEE
Confidence 4579999999984 5665 5999999999999999988 578999876521 1222334567789999999
Q ss_pred eccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCC
Q 002866 273 WFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPK 343 (872)
Q Consensus 273 pvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~ 343 (872)
+... .+..++.++|++++.. +++++.++.-+|.||.+++.+ ++..|+++|++|++|-+-. .+.
T Consensus 183 ~l~~~~~~~~d~~~l~~~~~~--------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~ 254 (462)
T PLN02187 183 DLLPEKEWEIDLEGIEAIADE--------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN 254 (462)
T ss_pred eCccccCCccCHHHHHHhcCC--------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC
Confidence 8742 2356788999876642 578899999999999999964 3456789999999999832 121
Q ss_pred CCccCCCCCCC---CcEEEEcccccCCCCCCceEEEEE
Q 002866 344 DMDSLGLSLFR---PDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 344 ~mipLDLs~l~---~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
. ...+..+. .=+++.|+=|.|+.+=--+|.+++
T Consensus 255 ~--~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~ 290 (462)
T PLN02187 255 P--FVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIAL 290 (462)
T ss_pred C--ceeHHHhccCCcEEEEecchhhcCCccceeEEEEe
Confidence 0 11222221 236778999988852122677765
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-08 Score=110.33 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=121.3
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHH-HHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWM-AQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~-~~~AkrkGa 267 (872)
.|+||.. ...+++||++.|++ .+++|+|+++|+.++..++ .++||+|++.... +...... ...++..|+
T Consensus 79 R~~~Pt~----~~Le~~lA~leg~~----~~iv~~sG~~Ai~~~l~al-~~~Gd~Vv~~~p~-Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 79 RFNHPNS----EIVEDRLAVYEGAE----SAALFSSGMSAIATTLLAF-VRPGDVILHSQPL-YGGTETLLAKTFRNFGV 148 (427)
T ss_pred CCCCcCH----HHHHHHHHHHhCCC----cEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCC-cccHHHHHHHHHHhcCc
Confidence 4677763 47888999999864 2777888889999888876 4689998865431 2223222 344567899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHH------CCcEEEeecccc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQ------NHWHVLLDAGSL 340 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are------~G~~VLVDAAQ~ 340 (872)
++..++. ..+.+++++.|.... ..+++++|.+...+|.||.++|++.+ ..++. +++.+++|-+-+
T Consensus 149 ~~v~~~~-----~~d~~~l~~~l~~~~---~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 149 GAVGFAD-----GLSEAAIGAAAEAAA---AKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred EEEEEeC-----CCCHHHHHHHHHhhc---cCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 8665542 135677877775321 12368999999999999999999854 45555 799999999833
Q ss_pred CCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 341 GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 341 aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.+....++ ..++|.++.|+-|.||+ ..| +|+++.++++++.+.
T Consensus 221 ~~~~~~pl---~~g~divv~S~SK~~gG-~~glr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 221 GPVFQKPL---EHGADLSVYSLTKYVGG-HSDLVAGAVLGRKALIRQVR 265 (427)
T ss_pred ccccCCcc---ccCCCEEEEcCceeecC-CCCcEEEEEECCHHHHHHHH
Confidence 33211133 35789999999999985 233 677776666555554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=108.94 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=123.3
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
.|..+. ..+.|+.||+++|++++ +|++|+|+++++.+++..+. .+| +.|++..- ........++..|+
T Consensus 55 ~Y~~~~----~~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p----~y~~~~~~~~~~g~ 123 (364)
T PRK04781 55 RYPDPQ----PPGLRSALAALYGCAPE--QLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPP----VFGMYAVCARLQNA 123 (364)
T ss_pred cCCCCC----HHHHHHHHHHHhCcChH--HEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCC----ChHHHHHHHHHcCC
Confidence 355553 35899999999999876 59999999999999999873 567 67765521 22233445567899
Q ss_pred EEEEEeccCC--CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHH--HCCcEEEeeccc--c
Q 002866 268 KVYSAWFKWP--TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQ--QNHWHVLLDAGS--L 340 (872)
Q Consensus 268 eV~~Vpvd~p--~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Ar--e~G~~VLVDAAQ--~ 340 (872)
++..+|.+.+ +..++.+++.+.+. .++++++.++..+|.||.++|.+.+ ..++ +++++|++|.+- +
T Consensus 124 ~~~~v~~~~~~~~~~~d~~~l~~~~~-------~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f 196 (364)
T PRK04781 124 PLVEVPLVDGADGFHADVPAIVAAAL-------ASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEF 196 (364)
T ss_pred EEEEEecCCCccCCCcCHHHHHHHHh-------ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhh
Confidence 9999997421 23456777655442 1358999999999999999999744 3333 247889999983 2
Q ss_pred CCCCCccCCC-CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 341 GPKDMDSLGL-SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 341 aG~~mipLDL-s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.... ..+.+ ...+-=+++.||=|.||-+=--+|.++..++.++.+..
T Consensus 197 ~~~~-~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 197 SDVP-SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRR 244 (364)
T ss_pred cCCc-chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHh
Confidence 3210 11111 12222378899999998311337999988887776653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-07 Score=108.95 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCC--CCCeEEEecccCchhH-HHHHHHHHHcCcEEEEE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFH--TNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~--~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~V 272 (872)
.+.+-+-+..|+++.|.+... ..+..++|.+...++.++... ++++|++. +..|+.. .-+..+++..|++|+.+
T Consensus 108 Le~l~e~Qt~i~eLtGm~~aN--aSl~d~atA~aEa~~~a~~~~~~~~~~vlv~-~~~hP~~~~v~~t~a~~~g~~v~~~ 184 (939)
T TIGR00461 108 LEALLNFQTVVSDLTGLPVAN--ASLLDEGTAAAEAMALSFNVSKKKANKFFVA-KDLHPQTKSVLHTRAKPFGIEVIVV 184 (939)
T ss_pred HHHHHHHHHHHHHHHCCChhh--hhccchhhHHHHHHHHHHHhhcCCCCEEEEC-CCCCcchHHHHHHHHHhcCcEEEEE
Confidence 367888999999999998653 667789999888777665433 34667665 3344544 34556788899999876
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS 351 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs 351 (872)
+ .++|+..+ ++. .++-...|..|.+.+++ +++.+|++|+++++++-..+.. +.....
T Consensus 185 ~---------~~~l~~~~----------~~~-~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~--ll~~Pg 242 (939)
T TIGR00461 185 D---------CSDIKKAV----------DVF-GCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALT--LLTPPG 242 (939)
T ss_pred c---------HHHHhhcC----------CEE-EEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhC--CcCCHH
Confidence 3 23343222 232 33334559999999997 5578899999999977765543 456677
Q ss_pred CCCCcEEEEccccc-----CCCCCCceEEEEEeCCCcccccC
Q 002866 352 LFRPDFIITSFYRV-----FGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 352 ~l~~DFlv~S~HK~-----fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++++|+++.+.++| ||+ | +.|++.+|+.....|..
T Consensus 243 e~GaDi~vg~~q~fg~p~g~GG-P-~aG~~a~~~~l~r~lPg 282 (939)
T TIGR00461 243 HYGADIVLGSSQRFGVPMGYGG-P-HAAFFAVKDEYNRKMPG 282 (939)
T ss_pred HcCCcEEeeCCCccCCCCCCCC-C-ceeeeeecHhhHhhCCC
Confidence 89999999988887 666 5 69999999987776654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=110.07 Aligned_cols=203 Identities=11% Similarity=0.026 Sum_probs=130.6
Q ss_pred CceecccCCCC-----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCC
Q 002866 149 PKVCLDYCGFG-----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEY 217 (872)
Q Consensus 149 ~~IYLDyAAtg-----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY 217 (872)
+.|.|..+--+ +.|+.+.+++.+ .+... ....|+.+ .-+.++|+.||++++. +++
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~-------al~~~--~~~~Y~~~---~G~~~lr~aia~~~~~~~~~~~~~~-- 118 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAA-------ALRSG--KYNSYSTC---VGLLPARRAIAEYLSRDLPYELSTD-- 118 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHH-------HHHcC--cCCCCCCC---ccCHHHHHHHHHHHhhccCCCCChh--
Confidence 47888887443 234566665432 11111 01124332 2345799999999853 444
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhcc
Q 002866 218 GLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 218 ~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr 296 (872)
+|++|+|+|+|+.+++..+ ..+||+|++..- .+. .+...+...|++++.+++.. .+..++.++|++++..
T Consensus 119 ~v~it~G~~~al~l~~~~l-~~~Gd~Vlv~~P-~y~---~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---- 189 (430)
T PLN00145 119 DIYLTAGCAQAIEIIMSVL-AQPGANILLPRP-GYP---LYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE---- 189 (430)
T ss_pred hEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCC-CCc---cHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc----
Confidence 5999999999999999988 478999876532 112 22334556799999888642 2456899999887743
Q ss_pred CCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCCCccC-CCCCCCCcEEEEcccccCC
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKDMDSL-GLSLFRPDFIITSFYRVFG 367 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~mipL-DLs~l~~DFlv~S~HK~fG 367 (872)
+|+++.+.+-+|.||.++|.+ +++.|+++|++|++|.+-. . +....++ .+.....=+++.|+=|.|+
T Consensus 190 ----~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 265 (430)
T PLN00145 190 ----NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWV 265 (430)
T ss_pred ----CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccC
Confidence 588999999999999999954 3466789999999999832 1 1100111 1122223477888888877
Q ss_pred CCCCceEEEEE
Q 002866 368 FDPTGFGCLLI 378 (872)
Q Consensus 368 ~~PtGvG~LyV 378 (872)
.+=--+|.+++
T Consensus 266 ~pG~RlG~iv~ 276 (430)
T PLN00145 266 VPGWRLGWIAT 276 (430)
T ss_pred CCCeeEEEEEE
Confidence 42122666665
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=104.26 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=129.9
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
..+.|+.+.... +|+.+++++.+ .+ ..+ ..|..+. ....|+.||++++++++ +|++|+|+++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~-------~~-~~~---~~Y~~~~----~~~lr~~ia~~~~~~~~--~I~it~G~~~ 93 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIRE-------AA-ERV---HSYPKAS----HADLTAALADRWDVSPE--QVWLANGGDG 93 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHH-------HH-hhh---hcCCCCC----HHHHHHHHHHHhCCCcc--eEEECCCHHH
Confidence 367887764443 44555555322 11 111 1344332 35799999999999887 4999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
|+.+++..+ .++|+.|++.. ++.......+...|+++..++++.. +..++.+++.+.+ .+++++.
T Consensus 94 al~~~~~~~-~~~gd~V~v~~----P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~k~i~ 159 (357)
T PRK14809 94 ALDYLARAM-LDPGDTVLVPD----PGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY---------DGERIVY 159 (357)
T ss_pred HHHHHHHHh-cCCCCEEEEeC----CChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh---------cCCcEEE
Confidence 999999887 47899987652 1111222335567999999988542 2344555554433 1367888
Q ss_pred EeCccCcccchhcHHHH-HHHH--HCCcEEEeecccc--CCCCCccCCC-CCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 002866 307 FPVQSRVTGAKYSYQWM-ALAQ--QNHWHVLLDAGSL--GPKDMDSLGL-SLFRPDFIITSFYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I-~~Ar--e~G~~VLVDAAQ~--aG~~mipLDL-s~l~~DFlv~S~HK~fG~~PtG--vG~LyV 378 (872)
++..+|.||+.+|.+.+ +.++ +.+.++++|-+.. .... ..+.. ....-=+++.|+=|.||. .| +|.++.
T Consensus 160 l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~--~GlRiG~~~~ 236 (357)
T PRK14809 160 LTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERP-SAVALVEERDDVAVLRTFSKAYGL--AGLRLGYAVV 236 (357)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCc-hhHHHHhhCCCEEEEecchhHhcC--cchhheeeec
Confidence 99999999999999743 3333 2378899999842 2110 11111 111122677899999983 36 788888
Q ss_pred eCCCccccc
Q 002866 379 KKSVMGSLQ 387 (872)
Q Consensus 379 Rk~~i~~L~ 387 (872)
.++.++.+.
T Consensus 237 ~~~~~~~~~ 245 (357)
T PRK14809 237 PEEWADAYA 245 (357)
T ss_pred CHHHHHHHH
Confidence 776665553
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-08 Score=107.87 Aligned_cols=209 Identities=13% Similarity=0.106 Sum_probs=135.5
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc------CCCCCCCcEEEe
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL------NIPENEYGLVFT 222 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL------gA~~dEY~VVFT 222 (872)
.+.|+.+--. +.|+.+++++.+ .+.........|..+. ....|+.||+++ +++++ +|++|
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~-------~l~~~~~~~~~Y~~~g----~~~lr~aia~~~~~~~~~~~~~~--~I~it 94 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAE-------AVAEAAAGLNRYPDRD----AVALRADLAAYLTAQTGVGLTVE--NVWAA 94 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHH-------HHhhhhhhhccCCCCc----hHHHHHHHHHHhhhhccCCCChh--hEEEC
Confidence 4667666544 355666666432 1111000112343332 357899999998 56665 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+++++.+++..+. .+|+.|++.. ++.......++..|+++..++.+. +..++.+++++++.. .++
T Consensus 95 ~G~~~~l~~~~~~~~-~~gd~v~v~~----P~y~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~-------~~~ 161 (368)
T PRK03317 95 NGSNEILQQLLQAFG-GPGRTALGFV----PSYSMHPIIARGTHTEWVEGPRAA-DFTLDVDAAVAAIAE-------HRP 161 (368)
T ss_pred CCHHHHHHHHHHHhc-CCCCEEEEeC----CChHHHHHHHHhcCCeeEEcccCC-CCCCCHHHHHHHHhc-------cCC
Confidence 999999999999874 6899987642 223333445666788888777643 346789999888853 146
Q ss_pred eEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeecccc-C---CCCCccCCCCCCCCc-EEEEcccccCCCCCCc--eE
Q 002866 303 GLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSL-G---PKDMDSLGLSLFRPD-FIITSFYRVFGFDPTG--FG 374 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~-a---G~~mipLDLs~l~~D-Flv~S~HK~fG~~PtG--vG 374 (872)
+++.++..+|.||..+|.+.+ ..++..++++++|-+.. . +. ...+.+....++ +++.|+-|.||. | | +|
T Consensus 162 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~-~-GlRiG 238 (368)
T PRK03317 162 DVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAF-A-GGRLG 238 (368)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhcc-c-hhhhh
Confidence 788888889999999999865 45566789999999954 2 21 011111111234 566699999984 2 5 58
Q ss_pred EEEEeCCCccccc
Q 002866 375 CLLIKKSVMGSLQ 387 (872)
Q Consensus 375 ~LyVRk~~i~~L~ 387 (872)
+++..++.++.+.
T Consensus 239 ~~~~~~~~~~~l~ 251 (368)
T PRK03317 239 YLAAAPAVVDALR 251 (368)
T ss_pred hhhCCHHHHHHHH
Confidence 8887776665553
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=110.29 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ | +++++ .|++|+|+++|+.+++..+ ..+||.|++..- .+... ...++..|+++..+|
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~-~I~it~G~~~al~~~~~~l-~~~gd~Vl~~~P-~y~~~---~~~~~~~g~~v~~v~ 144 (405)
T PRK09148 71 PGLRRAQAAYYARRFGVKLNPDT-QVVATLGSKEGFANMAQAI-TAPGDVILCPNP-SYPIH---AFGFIMAGGVIRSVP 144 (405)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC-cEEEcCChHHHHHHHHHHh-cCCCCEEEEcCC-CCccc---HHHHHhcCCEEEEEe
Confidence 36888888877 4 44431 5999999999999999988 478999876521 12222 233455799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDM 345 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~m 345 (872)
.+..+. ..+++++++... .++++++.++.-+|.||..+|.+ ++..|+++++++++|-+-.- +...
T Consensus 145 ~~~~~~--~~~~l~~~~~~~-----~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~ 217 (405)
T PRK09148 145 AEPDEE--FFPALERAVRHS-----IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPP 217 (405)
T ss_pred CCCCCC--CccCHHHHHhhc-----cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCC
Confidence 864322 234566555421 23688999998899999999985 34667999999999998421 1100
Q ss_pred cc-CCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 346 DS-LGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ip-LDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
.+ ..+.. .+..+++.|+-|.||. .| +|+++..+++++.+.
T Consensus 218 ~s~~~~~~~~~~~i~~~SfSK~~~~--pGlR~G~~v~~~~~i~~l~ 261 (405)
T PRK09148 218 PSVLQVPGAKDVTVEFTSMSKTFSM--AGWRMGFAVGNERLIAALT 261 (405)
T ss_pred CChhhCCCccCcEEEEeccccccCC--cchheeeeeCCHHHHHHHH
Confidence 01 11111 1234678999999984 36 899987776665553
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-08 Score=110.90 Aligned_cols=173 Identities=12% Similarity=0.137 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHH-HcCcEEE
Q 002866 200 HDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAK-EKGAKVY 270 (872)
Q Consensus 200 eeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-rkGaeV~ 270 (872)
.+.|+.||++++ ++++ .|++|+|+++|+.+++..+. .+||.|++..-+ +... ...++ +.|+++.
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe--~Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~-Y~~~---~~~~~~~~G~~vv 169 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPE--RVVMSGGATGANETIMFCLA-DPGDVFLIPSPY-YAAF---DRDLRWRTGVEII 169 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChh--hEEEccchHHHHHHHHHHhC-CCCCEEEECCCC-ccch---HHHHHhhCCCEEE
Confidence 468888888876 6666 59999999999999999984 789998865321 1222 22233 5799999
Q ss_pred EEeccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccC----
Q 002866 271 SAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLG---- 341 (872)
Q Consensus 271 ~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~a---- 341 (872)
.+|++. ++..++.+.++.++.... ....+++++.++.-+|.||+++|.+. +..|+++++++++|-+-..
T Consensus 170 ~v~~~~~~~~~~~~~~le~a~~~a~--~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~ 247 (496)
T PLN02376 170 PVPCSSSDNFKLTVDAADWAYKKAQ--ESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFA 247 (496)
T ss_pred EEeCCCCccCcCCHHHHHHHHHHHH--hcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccC
Confidence 999853 234678888877654211 11236788888999999999999863 4567899999999998432
Q ss_pred CCCCcc---C----CCCCCCCc--EEEEcccccCCCCCCceEEEEEeCC
Q 002866 342 PKDMDS---L----GLSLFRPD--FIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 342 G~~mip---L----DLs~l~~D--Flv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+....+ + |.....+| .++.|+-|.||.+=--+|+++..++
T Consensus 248 ~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~ 296 (496)
T PLN02376 248 GGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND 296 (496)
T ss_pred CCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence 211011 1 11111234 3468999999852245899998543
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-08 Score=109.40 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
++.+.+.+.+.+.+|..-...+|++|+|+|+|+.+++.++ +.+|+.|++..- .+.....+ ....|+++..++.+.
T Consensus 74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~vl~~~p-~y~~y~~~---~~~~~~~~~~v~~~~ 148 (402)
T PRK06107 74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT-LEAGDEVIIPAP-YWVSYPDM---VLANDGTPVIVACPE 148 (402)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-cCCCCEEEEecC-CCcCHHHH---HHHcCCEEEEecCCc
Confidence 4555566666666676322226999999999999998876 678999876532 11122222 233567777777653
Q ss_pred -CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHC-CcEEEeecccc----CCCCCc
Q 002866 277 -PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQN-HWHVLLDAGSL----GPKDMD 346 (872)
Q Consensus 277 -p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~-G~~VLVDAAQ~----aG~~mi 346 (872)
.+..++.+++++++.. +++++.++..+|.||..+|.+. ++.|+++ ++++++|-+-. -+..
T Consensus 149 ~~~~~~~~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~-- 218 (402)
T PRK06107 149 EQGFKLTPEALEAAITP--------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP-- 218 (402)
T ss_pred ccCCCCCHHHHHhhcCc--------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC--
Confidence 2345778888877642 4788888889999999999852 4567887 99999997631 1110
Q ss_pred cCCCCCC-----CCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 347 SLGLSLF-----RPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l-----~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...+..+ .--+++.|+.|.||. .| +|+++..+++++.+.
T Consensus 219 ~~~~~~~~~~~~~~vi~~~S~SK~~~~--pGlRiG~~~~~~~~~~~~~ 264 (402)
T PRK06107 219 TPHLLAAAPELRDRVLVTNGVSKTYAM--TGWRIGYAAGPADLIAAIN 264 (402)
T ss_pred CCCHHHhCcCccCCEEEEeccchhhcC--cccceeeeecCHHHHHHHH
Confidence 0111111 234778899999984 46 599987777665544
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-08 Score=107.46 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=117.7
Q ss_pred HHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
..|+.||+++ +++++ .|++|+|+++|+.+++.++ ..+|++|++.. +....+...++..|+++..+|.
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~----p~y~~~~~~~~~~g~~~~~~~~ 142 (384)
T PRK06348 70 ELIEEIIKYYSKNYDLSFKRN--EIMATVGACHGMYLALQSI-LDPGDEVIIHE----PYFTPYKDQIEMVGGKPIILET 142 (384)
T ss_pred HHHHHHHHHHHHHhCCCCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeC----CCCcchHHHHHHcCCEEEEecC
Confidence 5778888777 35665 5999999999999999988 47899987652 2222344455667999888886
Q ss_pred cC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C-CCCCc
Q 002866 275 KW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G-PKDMD 346 (872)
Q Consensus 275 d~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a-G~~mi 346 (872)
.. .+..++.++|++++.. ++++|.++.-+|.||..++.+ +++.|+++++++++|-+-. . .....
T Consensus 143 ~~~~~~~~d~~~l~~~~~~--------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 214 (384)
T PRK06348 143 YEEDGFQINVKKLEALITS--------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV 214 (384)
T ss_pred CcCcCCcCCHHHHHHhhCc--------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence 32 2345788999887742 467888888899999999974 3456789999999999832 1 11001
Q ss_pred c-CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 347 S-LGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 347 p-LDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+ ..+.. .+-.+++.|+=|.||.+=--+|+++..+..+..+
T Consensus 215 ~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~ 256 (384)
T PRK06348 215 PMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETA 256 (384)
T ss_pred chhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHH
Confidence 1 11111 1234788899999884123378888766654443
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-08 Score=106.12 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 198 VEHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 198 ~ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
.....|+.||++++ .+++ ..|++|+|+.+++.++...+...+|+.|++..- .|. .+.+.++..|+++..
T Consensus 45 g~~~lr~~ia~~~~~~~~~~~~~~-~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P-~y~---~~~~~~~~~g~~~~~ 119 (363)
T PF00155_consen 45 GYPELREAIADFLGRRYGVPVDPE-ANILVTSGAQAALFLLLRLLKINPGDTVLVPDP-CYP---SYIEAARLLGAEVIP 119 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTHHTTGG-EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEES-SST---HHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHhhhccCcccccc-eEEEEecccccchhhhhhcccccccccceecCC-ccc---cccccccccCceeee
Confidence 35689999999999 6654 259999999999998887774467888876532 233 334556778999999
Q ss_pred Eecc-CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCCCCc
Q 002866 272 AWFK-WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 272 Vpvd-~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
+|++ ..+..++.++|++.+...+. ...++++|.++..+|.||..+|.+.+ ..|+++++++++|-+......--
T Consensus 120 ~~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~ 197 (363)
T PF00155_consen 120 VPLDSENDFHLDPEALEEALDELPS--KGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD 197 (363)
T ss_dssp EEEEETTTTEETHHHHHHHHHTSHT--TTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS
T ss_pred ccccccccccccccccccccccccc--cccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCC
Confidence 9864 23457899999999975321 12247899999999999999998633 34789999999999964322100
Q ss_pred ------cCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 347 ------SLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 ------pLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...+.....-+++.|+-|.||. .| +|++++.+.+++.++
T Consensus 198 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~--~GlRvG~i~~~~~~~~~l~ 244 (363)
T PF00155_consen 198 PDFGPIRSLLDEDDNVIVVGSLSKSFGL--PGLRVGYIVAPPELIERLR 244 (363)
T ss_dssp SHTHHHHGHHTTTSTEEEEEESTTTTTS--GGGTEEEEEEEHHHHHHHH
T ss_pred CccCcccccccccccceeeeeccccccc--cccccccccchhhhhhhhh
Confidence 0112222224999999999985 36 999999777766554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=105.56 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-cc-cCchhHHHHHHHHHHcCcEEEEEe
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTM-FD-YESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~-~D-hEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.....+.++.+|+++|++++ .+++|+|+++|+..++.++. ++|++|++. .| ..|.++. ..++..|+++..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e--~ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s~~---~~~~l~ga~~~~-- 124 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEE--KILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPSIP---RSCKLAGAEYFE-- 124 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcc--eEEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchhHH---HHHHHcCCEEec--
Confidence 36778999999999999876 49999999999999999885 789998763 23 2345543 334556877632
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch---hcHH-HHHHHHHCCcEEEeeccccCCCCCccC-
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK---YSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL- 348 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i---~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL- 348 (872)
+ .+.+++ .. .+++++|.++. .+++|.+ .||+ ++..|+++|+++++|-|+..+.. ...
T Consensus 125 ~------~~l~~l----~~------~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~-~~~~ 186 (346)
T TIGR03576 125 S------DELSEL----KK------IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVR-RLYG 186 (346)
T ss_pred c------CCHHHH----hh------CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcccccc-ccCC
Confidence 1 123332 11 12478888876 5789998 4665 45678999999999999876520 011
Q ss_pred --CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 349 --GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 349 --DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
....+++|+++.|++|.+.+ +. .|+++.+++.++.|..
T Consensus 187 ~~~~~~~~~divv~s~SKalaG-~r-~G~v~~~~~li~~l~~ 226 (346)
T TIGR03576 187 QPPALDLGADLVVTSTDKLMDG-PR-GGLLAGRKELVDKIKS 226 (346)
T ss_pred CCCHHHcCCcEEEeccchhccc-cc-eEEEEeCHHHHHHHHH
Confidence 12234679999999998744 55 5899888887776653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=103.98 Aligned_cols=145 Identities=16% Similarity=0.065 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.+.+--+.+|+++|+.. .|-|+|+|.|+.+...++...+||+||++.- +..+-.......|++.++|.+|..
T Consensus 35 ~v~~FE~~~ae~~G~k~----ava~~sgT~AL~laL~al~ig~GDeVI~ps~----TfvATan~i~~~Ga~PVFvDid~~ 106 (374)
T COG0399 35 FVRRFEQAFAEYLGVKY----AVAVSSGTAALHLALLALAIGPGDEVIVPSF----TFVATANAVLLVGAKPVFVDIDPD 106 (374)
T ss_pred HHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHhcCCCCCCEEEecCC----chHHHHHHHHHcCCeEEEEecCCc
Confidence 44455568999999963 7889999999999999777889999886532 122222333447999999999988
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC--
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR-- 354 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~-- 354 (872)
+..+|++.|+++|.. +|+-|...| .-|..-+++ |++.|+++|+.|+-||||+.|. ...=...+
T Consensus 107 T~nid~~~ie~aIt~--------~tKAIipVh---l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga---~y~gk~vGt~ 172 (374)
T COG0399 107 TLNIDPDLIEAAITP--------RTKAIIPVH---LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGA---TYKGKKVGSF 172 (374)
T ss_pred ccCCCHHHHHHHccc--------CCeEEEEeh---hccCCCCHHHHHHHHHHcCCeEEEEcchhccC---eecCcccccc
Confidence 899999999999974 377776666 479999998 6778999999999999999985 23322222
Q ss_pred CcEEEEcccc
Q 002866 355 PDFIITSFYR 364 (872)
Q Consensus 355 ~DFlv~S~HK 364 (872)
-|+-+||||=
T Consensus 173 Gd~~~fSF~~ 182 (374)
T COG0399 173 GDIGAFSFHA 182 (374)
T ss_pred cceEEEEecC
Confidence 4677777763
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-08 Score=106.48 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=115.7
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.|++++ | +++++ .|++|+|+++++++++..+ ..+|++|++.. ..+... ...++..|+++..++
T Consensus 70 ~~lr~aia~~~~~~~g~~~~~~~-~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~-P~y~~~---~~~~~~~g~~~~~v~ 143 (395)
T PRK08175 70 PRLRRAISRWYQDRYDVDIDPES-EAIVTIGSKEGLAHLMLAT-LDHGDTVLVPN-PSYPIH---IYGAVIAGAQVRSVP 143 (395)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHh-CCCCCEEEEcC-CCCcch---HHHHHHcCCeEEEEe
Confidence 46777777775 3 44442 5999999999999999887 47899988652 122222 122345799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKDM 345 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~m 345 (872)
.+..+ ...+++++++.. ..++++++.++..+|.||..+|.+ +++.|+++|+++++|-+-. . +...
T Consensus 144 ~~~~~--~~~~~l~~~l~~-----~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~ 216 (395)
T PRK08175 144 LVEGV--DFFNELERAIRE-----SYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA 216 (395)
T ss_pred cccCC--CcHHHHHHHHhh-----ccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC
Confidence 87532 246788877753 123588999888899999999994 4567899999999998842 1 2100
Q ss_pred cc-CCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 346 DS-LGLSL-FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ip-LDLs~-l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
.+ ..+.. .+.-+++.|+=|.||. | | +|+++..+++++.+
T Consensus 217 ~~~~~~~~~~~~~i~~~S~SK~~g~-p-GlRiG~~~~~~~l~~~~ 259 (395)
T PRK08175 217 PSIMQVPGAKDVAVEFFTLSKSYNM-A-GWRIGFMVGNPELVSAL 259 (395)
T ss_pred cchhcCCCcccCEEEEeeccccccC-c-chhheeeeCCHHHHHHH
Confidence 01 11111 1233677999999985 3 5 68887666555444
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=104.42 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....+.++++|+++|.+ . .+|++++++|+..++..+. +.+++.|++. ...|.++... ++..|+++..++.
T Consensus 90 ~~~~~Le~~la~~~g~~-~---~l~~~sG~~an~~ai~~l~~~~~~~~v~~~-~~~h~s~~~~---~~~~g~~~~~~~~- 160 (402)
T TIGR01821 90 IPHVELEAELADLHGKE-S---ALVFTSGYVANDATLATLAKIIPGCVIFSD-ELNHASMIEG---IRHSGAEKFIFRH- 160 (402)
T ss_pred HHHHHHHHHHHHHhCCC-e---EEEECchHHHHHHHHHHhhCCCCCCEEEEc-chHhHHHHHH---HHHcCCeEEEECC-
Confidence 34578999999999963 2 4555556887776666543 3356555554 3456665432 3446887765432
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC------
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL------ 348 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL------ 348 (872)
.+.+++++++... ...++++|++.+++|++|.+.|++. .+.|+++|++++||.+|..|.- .+.
T Consensus 161 -----~d~~~l~~~l~~~----~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~ 230 (402)
T TIGR01821 161 -----NDVAHLEKLLQSV----DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAE 230 (402)
T ss_pred -----CCHHHHHHHHHhc----cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccch
Confidence 2567888877532 1125899999999999999999974 5678999999999999985520 111
Q ss_pred --CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 --GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 --DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++. ..+|+++.++-|.||. .| |+++.+++.++.+.
T Consensus 231 ~~~~~-~~~div~~t~sKa~g~--~G-G~i~~~~~~~~~l~ 267 (402)
T TIGR01821 231 RDGLM-HRIDIIEGTLAKAFGV--VG-GYIAASRKLIDAIR 267 (402)
T ss_pred hccCC-CCCeEEEEechhhhcc--CC-ceeecCHHHHHHHH
Confidence 111 2479999999999984 34 66666766666554
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-08 Score=103.58 Aligned_cols=174 Identities=8% Similarity=0.028 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHc-CcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEK-GAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akrk-GaeV~~Vpvd~ 276 (872)
...+.|++||+++|+++ +++|.|+++++.+....+ ..+|++|++..- .|...... ..+... |+++..++++.
T Consensus 35 ~~~~L~~~la~~~g~~~----~~v~~~g~~a~~~~l~~~-~~~gd~vi~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 107 (333)
T PRK10534 35 TVNALQDYAAELSGKEA----ALFLPTGTQANLVALLSH-CERGEEYIVGQA-AHNYLYEA-GGAAVLGSIQPQPIDAAA 107 (333)
T ss_pred HHHHHHHHHHHHhCCCe----EEEeCchHHHHHHHHHHh-cCCCCeeEEech-hhhhHhcC-CchHHhcCceEEeecCCC
Confidence 45689999999999864 568888888876666554 568899875421 22222110 001222 36777777654
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCC----CCccC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPK----DMDSL 348 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~----~mipL 348 (872)
+..++.++|++++.+... ...++++|.+. ++.||+++|.+.+ ..|+++++.+++|.|..... .....
T Consensus 108 -~~~~d~~~l~~~i~~~~~--~~~~~~lv~l~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~ 182 (333)
T PRK10534 108 -DGTLPLDKVAAKIKPDDI--HFARTRLLSLE--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELK 182 (333)
T ss_pred -CCCCCHHHHHHhhcccCc--CcccceEEEEe--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHH
Confidence 567889999888853110 01247888887 4568999999754 45688999999998743221 00001
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceE-EEEEeCCCccccc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFG-CLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG-~LyVRk~~i~~L~ 387 (872)
.+. -.+|.++.|+.|.||. | +| +++..+++++.++
T Consensus 183 ~~~-~~~~~~~~s~SK~~~~-~--~G~~~~~~~~~i~~~~ 218 (333)
T PRK10534 183 EIT-QYCDSFTICLSKGLGT-P--VGSLLVGNRDYIKRAR 218 (333)
T ss_pred HHH-hcCCEEEEEeEcCCCC-c--ccceEEcCHHHHHHHH
Confidence 111 1357777899999886 4 67 4555666665553
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=101.84 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=131.6
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc--------CCCCCCCcE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL--------NIPENEYGL 219 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL--------gA~~dEY~V 219 (872)
+.+.|+.+-... .|+.+.+++.+ .+. . ...|+.+. -..+.|+.||+++ |+++++ .|
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~-------~~~-~---~~~Y~~~~---G~~~lr~aia~~~~~~~~~~~~~~~~~-~i 93 (393)
T TIGR03538 29 PPIALSIGEPKHPTPAFVLEALRE-------NLH-G---LSTYPTTK---GLPELRQAIARWLERRFDLPTGVDPER-HV 93 (393)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHH-------Hhh-c---cCCCCCCC---CCHHHHHHHHHHHHHhhCCcccCCCCc-eE
Confidence 366777666553 45556665321 111 1 12344332 1346888888888 355532 59
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCe--EEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhcc
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKK--LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~--ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr 296 (872)
++|+|+++|+.+++..+. .+|+. |++. + +........++..|+++..+|++.. +..++.+++++++..
T Consensus 94 ~it~Ga~~al~~~~~~l~-~~gd~~~vlv~-~---P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---- 164 (393)
T TIGR03538 94 LPVNGTREALFAFAQAVI-NPGQAPLVVMP-N---PFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR---- 164 (393)
T ss_pred EECCCcHHHHHHHHHHHc-CCCCcceEEec-C---CCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh----
Confidence 999999999999998873 67886 5543 2 1222233446678999999998632 235788888877743
Q ss_pred CCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--CCC-CCccCC----CCCCCC-----cEEEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--GPK-DMDSLG----LSLFRP-----DFIIT 360 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--aG~-~mipLD----Ls~l~~-----DFlv~ 360 (872)
+++++.++.-+|.||..++.+ ++..|++++++|++|-+-. ... ...+.. +...+. =+++.
T Consensus 165 ----~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 240 (393)
T TIGR03538 165 ----RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFH 240 (393)
T ss_pred ----cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEe
Confidence 478888889999999999964 3466789999999999832 110 000111 011111 27899
Q ss_pred cccccCCCCCCceEEEEEeCCCcccc
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
|+-|.||.+=..+|+++..+..++.+
T Consensus 241 S~SK~~~~~GlRvG~~i~~~~l~~~~ 266 (393)
T TIGR03538 241 SLSKRSNLPGLRSGFVAGDAEILKAF 266 (393)
T ss_pred cchhhcCCcccceEEEecCHHHHHHH
Confidence 99998774212378877665554433
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=104.14 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=118.9
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|++||+++ | +++++ +|++|+|+++++.+++..+. .+|+.|++.. ..+. .....++..|+++..+|
T Consensus 73 ~~lr~aia~~~~~~~g~~~~~~~-~i~it~G~~~~l~~~~~~~~-~~gd~vlv~~-P~y~---~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 73 PFLKEAAADFYKREYGVTLDPET-EVAILFGGKAGLVELPQCLM-NPGDTILVPD-PGYP---DYLSGVALARAQFETMP 146 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCc-cEEEcCCcHHHHHHHHHHhC-CCCCEEEEcC-CCCc---chHHHHHhcCCEEEEee
Confidence 46888888886 5 45541 49999999999999988874 6899887652 1222 23344567899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-C---CCC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-G---PKD 344 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-a---G~~ 344 (872)
.+.. +..++.+++++.+.. ++++|.++.-+|.||+.+|.+. ++.|+++++++++|-+-. . +..
T Consensus 147 ~~~~~~~~~d~~~l~~~~~~--------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~ 218 (389)
T PRK08068 147 LIAENNFLPDYTKIPEEVAE--------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK 218 (389)
T ss_pred cccccCCCCCHHHHHHhccc--------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCC
Confidence 8643 345677888777642 4778888877899999999953 456789999999999842 1 110
Q ss_pred Ccc-CCCC-CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 345 MDS-LGLS-LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mip-LDLs-~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
..+ +.+. ..+..+++.|+=|.||. .| +|.++..+++++.+.
T Consensus 219 ~~s~~~~~~~~~~~i~~~S~SK~~g~--~GlRiG~~~~~~~l~~~l~ 263 (389)
T PRK08068 219 PVSFLQTPGAKDVGIELYTLSKTFNM--AGWRVAFAVGNESVIEAIN 263 (389)
T ss_pred CcChhhCCCccCCEEEEecchhccCC--ccceeEeEecCHHHHHHHH
Confidence 011 1111 12245788999999984 36 898887776665543
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=103.86 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=115.4
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||. .....++||.+-|+. .++.++++..|+..+..++ .++||+||...+.-.....-+.+.+.+.|++
T Consensus 51 R~gnPt----~~~le~~la~Le~g~----~a~~~~SGmaAi~~~l~~l-l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~ 121 (386)
T PF01053_consen 51 RYGNPT----VRALEQRLAALEGGE----DALLFSSGMAAISAALLAL-LKPGDHIVASDDLYGGTYRLLEELLPRFGVE 121 (386)
T ss_dssp TTC-HH----HHHHHHHHHHHHT-S----EEEEESSHHHHHHHHHHHH-S-TTBEEEEESSSSHHHHHHHHHCHHHTTSE
T ss_pred cccccc----HHHHHHHHHHhhccc----ceeeccchHHHHHHHHHhh-cccCCceEecCCccCcchhhhhhhhcccCcE
Confidence 346665 356778899999983 3666789999998877776 4789998876553234343444567778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCC-cEEEeeccccCCCCCc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNH-WHVLLDAGSLGPKDMD 346 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G-~~VLVDAAQ~aG~~mi 346 (872)
+.+++.. +.++++++|.. +|++|-+-..+|.+..+.||+. ++.||++| +.++||.+-+.|.
T Consensus 122 v~~~d~~------d~~~l~~~l~~--------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~--- 184 (386)
T PF01053_consen 122 VTFVDPT------DLEALEAALRP--------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY--- 184 (386)
T ss_dssp EEEESTT------SHHHHHHHHCT--------TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT---
T ss_pred EEEeCch------hHHHHHhhccc--------cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee---
Confidence 9987542 57889888863 6999999999999999999984 56789999 9999999966664
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeC
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTG---FGCLLIKK 380 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtG---vG~LyVRk 380 (872)
.++.=.+++|+++-|+-|++++ .| .|++.++.
T Consensus 185 ~~~pL~~GaDivv~S~TKyl~G--hsdv~~G~vv~~~ 219 (386)
T PF01053_consen 185 NQNPLELGADIVVHSATKYLSG--HSDVMGGAVVVNG 219 (386)
T ss_dssp TC-GGGGT-SEEEEETTTTTTT--SSSE-EEEEEESS
T ss_pred eeccCcCCceEEEeeccccccC--CcceeeEEEEECc
Confidence 2332346899999999999886 24 45555544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-07 Score=103.48 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=112.6
Q ss_pred HHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ +++++ .|++|+|+++|+.+++..+. .+|+.|++..- ....+...++..|+++..++
T Consensus 77 ~~lr~aia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~~l~-~~gd~v~v~~P----~y~~~~~~~~~~g~~~~~~~ 149 (409)
T PLN00143 77 LPARRAIADYLSNDLPYQLSPD--DVYLTLGCKHAAEIIIKVLA-RPEANILLPRP----GFPDVETYAIFHHLEIRHFD 149 (409)
T ss_pred HHHHHHHHHHHHhhcCCCCCHh--hEEEecChHHHHHHHHHHHc-CCCCEEEEcCC----CCcCHHHHHHHcCCEEEEEe
Confidence 36888888887 35555 59999999999999999874 78999876531 12223344566899999998
Q ss_pred ccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCC
Q 002866 274 FKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKD 344 (872)
Q Consensus 274 vd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~ 344 (872)
.+. .+..++.++|++++.. +++++.++.-+|.||++++.+ ++..|+++++++++|-+-. . +..
T Consensus 150 ~~~~~~~~~d~~~l~~~~~~--------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~ 221 (409)
T PLN00143 150 LLPEKGWEVDLDAVEAIADE--------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKP 221 (409)
T ss_pred ccCCCCCcCCHHHHHHhccc--------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCC
Confidence 742 2345788999876642 477888888899999999975 3456789999999999832 1 110
Q ss_pred CccCC-CCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 345 MDSLG-LSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 345 mipLD-Ls~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
..++. +.....=+++.|+=|.|+.+=-.+|.++.
T Consensus 222 ~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~ 256 (409)
T PLN00143 222 FVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVT 256 (409)
T ss_pred CcchhhhcccCcEEEEccchhhcCCCccceEEEEe
Confidence 01111 11111227889999998752233677765
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=104.14 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.++++|+++|+.. .|+|++|.++....+. .+ +++||+|++. +..|.++..-. .-.++++.+++..
T Consensus 43 ~~~~~LE~~lA~~~g~e~---al~~~sG~~a~~~~i~-~l-~~~GD~Vl~~-~~~h~s~~~~~---~l~~~~~~~~~~~- 112 (392)
T PLN03227 43 DAHLELEQCMAEFLGTES---AILYSDGASTTSSTVA-AF-AKRGDLLVVD-RGVNEALLVGV---SLSRANVRWFRHN- 112 (392)
T ss_pred HHHHHHHHHHHHHhCCCc---EEEecCcHHHHHHHHH-Hh-CCCCCEEEEe-ccccHHHHHHH---HHcCCeEEEeCCC-
Confidence 367789999999999852 5888888888774444 44 6899998876 34566664322 2235666655432
Q ss_pred CCCccCHHHHHHHHhhhhc------cCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc--
Q 002866 277 PTLKLCSTDLRKQISSKKR------RKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS-- 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~r------r~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip-- 347 (872)
+.+++++.+..... ....+++++|.+..+.|.+|.+.|++. .+.|+++|+.+++|-++..|. ...
T Consensus 113 -----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~-~g~~G 186 (392)
T PLN03227 113 -----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGT-LGKSG 186 (392)
T ss_pred -----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccc-cCCCC
Confidence 34555544332110 001246899999999999999999985 567899999999999987552 011
Q ss_pred ------CCCC-CCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 ------LGLS-LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 ------LDLs-~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+++. ..++|.+++|+.|.+| |. .|++..+++.++.+
T Consensus 187 ~g~~~~~g~~p~~~~Div~~slsk~~g--~~-gg~v~~~~~~~~~~ 229 (392)
T PLN03227 187 RGSLEHAGLKPMVHAEIVTFSLENAFG--SV-GGMTVGSEEVVDHQ 229 (392)
T ss_pred CcHHHHcCCCCCCCceEEEeechhhhh--cc-CcEEecCHHHHHHH
Confidence 1221 2467999999999887 33 24555666655444
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-08 Score=106.90 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=128.7
Q ss_pred cCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH--HHHHHHHc
Q 002866 188 ALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW--MAQSAKEK 265 (872)
Q Consensus 188 ~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~--~~~~Akrk 265 (872)
..||+- ....++-++++++++. . .+.|++++|.|..+.+.+.- ++|..+++... -|..... -.++.. .
T Consensus 29 ~~YG~D---~~~~~~e~~~ae~~g~--~--a~~Fv~sGT~aN~lal~~~~-~~~~~vi~~~~-aHi~~~E~Ga~~~~~-~ 98 (342)
T COG2008 29 DVYGED---PTTNALEQRIAELFGK--E--AALFVPSGTQANQLALAAHC-QPGESVICHET-AHIYTDECGAPEFFG-G 98 (342)
T ss_pred CCCCCC---HHHHHHHHHHHHHhCC--c--eEEEecCccHHHHHHHHHhc-CCCCeEEEecc-ccceecccCcHHHHc-C
Confidence 457764 3456788899999998 3 49999999999999888765 78888776543 2332211 111111 2
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccC
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~a 341 (872)
|.++.. +..++|.+++++|+..|... ......+.++++--+.++.|++||++.+ ..||++|+.+|+|+|-+.
T Consensus 99 ~~~~~~--~~g~~Gklt~e~v~~~i~~~--d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~ 174 (342)
T COG2008 99 GQKLPI--VPGADGKLTPEDVEAAIRPD--DIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLA 174 (342)
T ss_pred Cceecc--CCCCCCCcCHHHHHHhhcCC--CcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHH
Confidence 333332 33467999999999988642 1234567777777777799999999754 346999999999999432
Q ss_pred CCCCc--cCCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCCCCCCCCCeEE
Q 002866 342 PKDMD--SLGLSL--FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGMVK 399 (872)
Q Consensus 342 G~~mi--pLDLs~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~~~~~GgGtV~ 399 (872)
-- +. ..++.. -+||.+++.+.|..|. | +=.+|+.+.++++..+-..-..|||+.+
T Consensus 175 nA-~valg~~~~~~~~~~D~v~~~~tK~g~~-~-~gAiv~gn~~~~~~a~~~rK~~Ggl~~k 233 (342)
T COG2008 175 NA-LVALGVALKTIKSYVDSVSFCLTKGGGA-P-VGAIVFGNRDFAKRARRWRKRAGGLMRK 233 (342)
T ss_pred HH-HHHcCCCHHHHHhhCCEEEEecccCCcc-e-eeeEEEcCHHHHHHHHHHHHHhcccHhh
Confidence 11 01 233333 3799999999998886 4 3334555667666554333346777754
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=106.95 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=119.1
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.||.- ...+++.++|+++||.+ ..+|++++|.|..+++..+. +++..+|.... -|-.+..--..+.-.|++
T Consensus 24 ~Yg~D---~~~~~l~~~i~~l~g~e----~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~-aHi~~~E~ga~~~~~G~~ 94 (290)
T PF01212_consen 24 AYGED---PTTARLEERIAELFGKE----AALFVPSGTMANQLALRAHL-RPGESVICADT-AHIHFDETGAIEELSGAK 94 (290)
T ss_dssp CTTSS---HHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHHH-HTTEEEEEETT-EHHHHSSTTHHHHHTTCE
T ss_pred ccCCC---hhHHHHHHHHHHHcCCC----EEEEeCCCChHHHHHHHHHH-hcCCceecccc-ceeeeeccchhhHhcCcE
Confidence 46543 45678999999999984 26799999999999888875 66777776522 111111101112337999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcHHHHH----HHHHCCcEEEeecccc---
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQWMA----LAQQNHWHVLLDAGSL--- 340 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe~I~----~Are~G~~VLVDAAQ~--- 340 (872)
+..++.+. .|.+++++|++.+..... ..+++++|+++..+|.. |+++|+++++ .||++|+.+++|+|=+
T Consensus 95 ~~~l~~~~-~G~l~~~~l~~~~~~~~~--h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 95 LIPLPSDD-DGKLTPEDLEAAIEEHGA--HHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp EEEEBECT-GTBB-HHHHHHHHHHHTG--TSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred EEECCCcc-cCCCCHHHHHHHhhhccc--cCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 98887653 289999999999976421 23568999998877754 9999997553 4689999999999932
Q ss_pred ---CCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 341 ---GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 341 ---aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
.+. .+-++. -.+|.+.+|++|-+|. | +=++|..+++.+
T Consensus 172 ~~~~~~--~~~e~~-~~~D~v~~~~tK~~g~-~-~Gavl~~~~~~i 212 (290)
T PF01212_consen 172 AAALGV--SLAEIA-AGADSVSFGGTKNGGA-P-GGAVLAGNKEFI 212 (290)
T ss_dssp HCHHHH--HHHHHH-TTSSEEEEETTSTT-S-S-SEEEEEESHHHH
T ss_pred hhcccc--cHHHHh-hhCCEEEEEEEccccc-c-cceEEEechHHH
Confidence 222 122222 4799999999998886 3 456677777754
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-07 Score=99.82 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
..+.|++||++++++++ +|++|+|+++++.+++..+. + +.|++.. +....+...++..|+++..++.+.++
T Consensus 56 ~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~~~--~-~~v~i~~----P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 56 YLELRKRIASFEQLDLE--NVILGNGATELIFNIVKVTK--P-KKVLILA----PTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHhC--C-CcEEEec----CChHHHHHHHHHcCCeeEEEeCcccc
Confidence 46899999999999887 49999999999999998862 3 4555431 22334455667789999999986432
Q ss_pred -CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--C--CCCCccCC
Q 002866 279 -LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--G--PKDMDSLG 349 (872)
Q Consensus 279 -g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--a--G~~mipLD 349 (872)
..++ +++.+.+. .+++++.++.-+|.||..++.+ ++..|+++++++++|.+-. . +.....+.
T Consensus 127 ~~~~d-~~~~~~~~--------~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~ 197 (354)
T PRK06358 127 NFAAN-EIVLEEIK--------EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMIN 197 (354)
T ss_pred CCCcc-HHHHHhhc--------cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHH
Confidence 2466 55554443 1478888888899999999964 3466789999999999831 1 11000011
Q ss_pred -CCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 350 -LSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 350 -Ls~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+...+-=+++.|+=|.||.+=..+|.+++
T Consensus 198 ~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~ 227 (354)
T PRK06358 198 YLENFKNLIIIRAFTKFFAIPGLRLGYGLT 227 (354)
T ss_pred hccCCCCEEEEEechhhccCcchhheeeec
Confidence 11111126788999998831233666654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-07 Score=99.45 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=115.4
Q ss_pred HHHHHHHHHhc----C---CCCCCCcEEEeCCHHHHHHHHHhhCCCCC---CCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 200 HDIKTRIMDHL----N---IPENEYGLVFTVSRGSAFKLLAESYPFHT---NKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 200 eeARerIA~lL----g---A~~dEY~VVFTsnATeALnLVaeslpf~~---Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
.+.|+.||+++ | +++++ .|++|+|+++|+.+++..+. .+ |+.|++.. +........++..|+++
T Consensus 68 ~~lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~----P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 68 PALREAIAAWLERRYGLPALDPAT-QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPN----PFYQIYEGAALLAGAEP 141 (396)
T ss_pred HHHHHHHHHHHHHHhCCCcCCccc-eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcC----CCccchHHHHHhcCCEE
Confidence 35777888765 6 44432 59999999999999999874 56 77777652 12222334456679999
Q ss_pred EEEeccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccC-CC
Q 002866 270 YSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLG-PK 343 (872)
Q Consensus 270 ~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~a-G~ 343 (872)
..+|++.. +..++.+++++.+.. +++++.++.-+|.||..++.+. ++.|+++++++++|-+-.- -.
T Consensus 142 ~~vp~~~~~~~~~d~~~l~~~~~~--------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 213 (396)
T PRK09147 142 YFLNCDPANNFAPDFDAVPAEVWA--------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYF 213 (396)
T ss_pred EEeccCccccCccCHHHHHHHHhh--------ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccccc
Confidence 99998643 235788988876642 4788888899999999999853 4567899999999988321 00
Q ss_pred CC--ccCC-C---CCCCCc-----EEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 344 DM--DSLG-L---SLFRPD-----FIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~m--ipLD-L---s~l~~D-----Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+- .++. + ...+.| +++.|+=|.||.+=..+|+++..+..++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~ 267 (396)
T PRK09147 214 DEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKF 267 (396)
T ss_pred CCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHH
Confidence 00 0110 1 111222 888999998775213378877665554433
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=102.37 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcC--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 200 HDIKTRIMDHLN--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 200 eeARerIA~lLg--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.+.|+.|+++++ +.++ .+|+.|+|+++|+.+++..+. ++||.|++.. ++.......++..|+++..+|++..
T Consensus 124 ~~lr~~ia~~~~~~~~~~-~~Iiit~G~~~al~~~~~~l~-~pgd~Vlv~~----P~y~~~~~~~~~~g~~~~~v~~~~~ 197 (431)
T PRK15481 124 PELHAWAARWLRDDCPVA-FEIDLTSGAIDAIERLLCAHL-LPGDSVAVED----PCFLSSINMLRYAGFSASPVSVDAE 197 (431)
T ss_pred HHHHHHHHHHHhhccCCc-CeEEEecCcHHHHHHHHHHhC-CCCCEEEEeC----CCcHHHHHHHHHcCCeEEeeccCCC
Confidence 358888898877 3332 269999999999999999874 6899987652 2333445667778999999998753
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEE-eCccCcccchhcHH----HHHHHHHC-CcEEEeeccc--cC--CCCCcc
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVF-PVQSRVTGAKYSYQ----WMALAQQN-HWHVLLDAGS--LG--PKDMDS 347 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~-p~vSNvTG~i~PLe----~I~~Are~-G~~VLVDAAQ--~a--G~~mip 347 (872)
+ ++.++|++++.. +++++.+ |.-+|.||+.++.+ ++..|+++ +++++.|-+- +. +.. ..
T Consensus 198 -g-~~~~~l~~~~~~--------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~-~~ 266 (431)
T PRK15481 198 -G-MQPEKLERALAQ--------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYH-SV 266 (431)
T ss_pred -C-CCHHHHHHHHhc--------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCC-CC
Confidence 3 788999888753 3566555 58999999999985 34567888 9999999762 11 110 11
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+.. ..+--+++.||-|.||+ =-.+|+++..++.++.+
T Consensus 267 ~~~-~~~~vi~~~SfSK~~~~-GlRiG~~i~~~~~~~~~ 303 (431)
T PRK15481 267 IPQ-TTQRWALIRSVSKALGP-DLRLAFVASDSATSARL 303 (431)
T ss_pred CcC-CCCCEEEEeeeccccCC-CceeEEEeCCHHHHHHH
Confidence 211 12234889999999983 34478877666555444
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=101.62 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC-eEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 199 EHDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNK-KLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 199 ieeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
..+.|+.||++++ ++++ .|++|+|+++|+.+++.++- .+|+ .|++.. ++.......++..|+++
T Consensus 68 ~~~Lr~aia~~~~~~~~~~~~v~~~--~I~it~Ga~~al~~~~~~~~-~~g~~~Vlv~~----P~y~~~~~~~~~~g~~~ 140 (374)
T PRK02610 68 HEALKQAIAEYVNESAAGSSQITPA--NISVGNGSDELIRSLLIATC-LGGEGSILVAE----PTFSMYGILAQTLGIPV 140 (374)
T ss_pred hHHHHHHHHHHhCccccccCCCCHH--HEEEcCChHHHHHHHHHHHc-CCCCCeEEEcC----CChHHHHHHHHHcCCEE
Confidence 3579999999998 6665 59999999999987766543 2454 666542 23444556677789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHH--HCCcEEEeeccc--cCCCCC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQ--QNHWHVLLDAGS--LGPKDM 345 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Ar--e~G~~VLVDAAQ--~aG~~m 345 (872)
..++.+..+..++.++|++++... ...+++++.++.-+|.||+.++.+.+..+. .+++++++|-+- +....
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~- 215 (374)
T PRK02610 141 VRVGRDPETFEIDLAAAQSAIEQT----QNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTT- 215 (374)
T ss_pred EEecCCcccCCCCHHHHHHHHHhh----cCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccc-
Confidence 999886534568899998888531 113588888888899999999997655442 248999999983 22221
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..-.+....-=+++.|+=|.||.+=--+|+++..+++++.+.
T Consensus 216 ~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~ 257 (374)
T PRK02610 216 LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLE 257 (374)
T ss_pred hHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHH
Confidence 111122222226789999999742233788887666655543
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-07 Score=98.74 Aligned_cols=207 Identities=11% Similarity=0.084 Sum_probs=129.1
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.+.|+.+--. ++|+.+++++.+ .+. .+ ..|..+. ..+.|+.||++++++++ .|++|+|++++
T Consensus 24 ~i~l~~~~n~~~~~~~~~~a~~~-------~~~-~~---~~Y~~~~----~~~Lr~aia~~~~v~~~--~I~it~G~~~~ 86 (360)
T PRK07392 24 ILDFSASINPLGPPESVIAAIQS-------ALS-AL---RHYPDPD----YRELRLALAQHHQLPPE--WILPGNGAAEL 86 (360)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHH-------HHH-Hh---hcCCCcC----HHHHHHHHHHHhCcChh--hEEECCCHHHH
Confidence 5778755332 245666665432 111 11 2355443 24899999999999887 49999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCc-cCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLK-LCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~-Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
+.+++..+. +|+.|++.. ++.......++..|+++..+|.+..++. .+..+++.+... ..+++++.+
T Consensus 87 i~~~~~~l~--~g~~vlv~~----P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l 154 (360)
T PRK07392 87 LTWAGRELA--QLRAVYLIT----PAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQ------LTPNDGLLL 154 (360)
T ss_pred HHHHHHHhC--CCCeEEEEC----CCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHh------ccCCCEEEE
Confidence 999998763 577777642 2333455667778999999998643321 012233333321 124789999
Q ss_pred eCccCcccchhcHHH-HHHHHHCCcEEEeecccc--CCCC-Ccc-CC-CCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 308 PVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSL--GPKD-MDS-LG-LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 308 p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~--aG~~-mip-LD-Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+.-+|.||..++.+. ...++++++ +++|-+-. .... ..+ +. +....-=+++.|+=|.||.+=--+|+++..++
T Consensus 155 ~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~ 233 (360)
T PRK07392 155 NNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPD 233 (360)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHH
Confidence 999999999999875 456788886 66688731 1110 001 11 11111127788999999831234788887665
Q ss_pred Ccccc
Q 002866 382 VMGSL 386 (872)
Q Consensus 382 ~i~~L 386 (872)
.++.+
T Consensus 234 ~~~~~ 238 (360)
T PRK07392 234 RLQRW 238 (360)
T ss_pred HHHHH
Confidence 55443
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=106.22 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++.+.+|+++|++. +...|.|+|.++..++.+. .++||.||+.-. .|-||..-. .-.|+++++++...
T Consensus 66 G~I~eAe~~aA~~fGAd~---t~flvnGsT~g~~a~i~a~-~~~gd~VLv~RN-~HkSv~~al---il~ga~Pvyi~p~~ 137 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADK---TFFLVNGSTSGNQAMIMAL-CRPGDKVLVDRN-CHKSVYNAL---ILSGAIPVYIPPED 137 (417)
T ss_dssp THHHHHHHHHHHHHTESE---EEEESSHHHHHHHHHHHHH-TTTTCEEEEETT---HHHHHHH---HHHTEEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCe---EEEEecCchHHHHHHHHHh-cCCCCEEEEcCC-cHHHHHHHH---HHcCCeEEEecCCc
Confidence 578899999999999975 3666788888888888776 378999988754 678886532 33589999887643
Q ss_pred CC----CccCH-----HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC--C
Q 002866 277 PT----LKLCS-----TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK--D 344 (872)
Q Consensus 277 p~----g~Id~-----edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~--~ 344 (872)
+. +.++. ++++++|.+... ....++|+++.- +--|+.++++ +++.+|++++.+|||.|+.+.. .
T Consensus 138 ~~~gi~~~i~~~~~~~~~i~~~l~~~p~---~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 213 (417)
T PF01276_consen 138 NEYGIIGGISPDEFNEEDIEEALKEHPD---AKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH 213 (417)
T ss_dssp -TTS-BEEB-GGGGSHHHHHHHHHHCTT---CHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred cccCCccCCChhhhhHHHHHHHHHhCcc---ccCceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence 22 23556 889999976421 001356777654 4479999998 5678899999999999976542 1
Q ss_pred CccCCCCCCCCc-------EEEEcccccCCCCCCceEEEEEeCCC
Q 002866 345 MDSLGLSLFRPD-------FIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 345 mipLDLs~l~~D-------Flv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
..+-+-...++| +++-|.||.+++ .+...+|.++.+.
T Consensus 214 ~lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~ 257 (417)
T PF01276_consen 214 PLPRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDR 257 (417)
T ss_dssp GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCC
T ss_pred CCccchhhccCccccccceeeeechhhcccc-cccceEEEecCCC
Confidence 123334457899 999999999988 8999999999985
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=101.36 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=115.3
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ | +++++ .|+.|+|+++|+.++...+. .+||.|++.. ++.......++..|+++..+|
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l~-~~gd~Vlv~~----P~y~~~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 71 LDFREAAAQWYEQRFGLAVDPET-EVLPLIGSQEGTAHLPLAVL-NPGDFALLLD----PGYPSHAGGVYLAGGQIYPMP 144 (388)
T ss_pred HHHHHHHHHHHHHhhCCcCCCcC-eEEECCCcHHHHHHHHHHhC-CCCCEEEEcC----CCCcchHHHHHhcCCEEEEEE
Confidence 46888888877 4 55541 49999999999999998874 6899987642 222233345666899999999
Q ss_pred ccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc--c--CCCC
Q 002866 274 FKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS--L--GPKD 344 (872)
Q Consensus 274 vd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ--~--aG~~ 344 (872)
++..+ ..++.+++.+.+.. +++++.++.-+|.||..++.+. +..|+++++++++|-+- + .+..
T Consensus 145 ~~~~~~~~~d~~~l~~~~~~--------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 216 (388)
T PRK07366 145 LRAENDFLPVFADIPTEVLA--------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV 216 (388)
T ss_pred CCCccCCCCCHHHHHHhhcc--------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence 87432 23566677655532 4788888888999999999863 35678999999999772 1 1210
Q ss_pred -Cc-cCCCCCC-CCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 345 -MD-SLGLSLF-RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 345 -mi-pLDLs~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.. -.++... ..-+++.|+=|.||.+=--+|.++..+++++.+
T Consensus 217 ~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l 261 (388)
T PRK07366 217 EPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQAL 261 (388)
T ss_pred CCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHH
Confidence 00 0111111 123677899999984223478787666655544
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=102.21 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=104.8
Q ss_pred HHHHHHHHhc-------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 201 DIKTRIMDHL-------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 201 eARerIA~lL-------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
+.|+.|++++ |++++ +|++|+|+++|+.++...+..++||.|++. +..+.... ..++..|+++..++
T Consensus 60 ~lr~~ia~~~~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~-~p~y~~~~---~~~~~~g~~~~~v~ 133 (357)
T TIGR03539 60 ELREAIVDWLERRRGVPGLDPT--AVLPVIGTKELVAWLPTLLGLGPGDTVVIP-ELAYPTYE---VGALLAGATPVAAD 133 (357)
T ss_pred HHHHHHHHHHHHhcCCCCCCcC--eEEEccChHHHHHHHHHHHcCCCCCEEEEC-CCCcHHHH---HHHHhcCCEEeccC
Confidence 4566666666 46565 699999999999998877756889998875 33334333 33456788876542
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-CCCC---C
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-GPKD---M 345 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-aG~~---m 345 (872)
+.+. +.. .+++++.++..+|.||..+|.+ +++.|+++|+++++|.+.. ...+ +
T Consensus 134 --------~~~~----l~~-------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 134 --------DPTE----LDP-------VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred --------Chhh----cCc-------cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 1121 211 2588999999999999999975 3456799999999999853 1110 0
Q ss_pred ccCCCC----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 346 DSLGLS----LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ipLDLs----~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
..++.. ...--+++.|+.|.||. | | +|.++..++.++.+
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~-~-G~R~G~~i~~~~~~~~~ 239 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNL-A-GYRAGFVAGDPALVAEL 239 (357)
T ss_pred cceecccCCCccccEEEEeccccccCC-C-ceeEEEEecCHHHHHHH
Confidence 011110 01224788899999875 3 6 68887666555443
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-06 Score=99.90 Aligned_cols=214 Identities=15% Similarity=0.052 Sum_probs=137.1
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHH
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFK 230 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALn 230 (872)
-|+-|--+.+.++.++-.+. .+.-|......-..|.+..+..++=+-+++++|.++. .=+||+|+|+|.-
T Consensus 85 ry~ghm~~~~~~paila~~~--------a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~--~G~~TsGGT~ANl 154 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNY--------AMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG--WGHIVADGSLANL 154 (608)
T ss_pred ceEEECcCCCCHHHHHHHHH--------HHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC--CeEEeCChHHHHH
Confidence 57777777777766654321 1111211111124555567788889999999998753 2469999999855
Q ss_pred H---HHhh---CCC--C-------------------------------------------CCC------eEEEecccCch
Q 002866 231 L---LAES---YPF--H-------------------------------------------TNK------KLLTMFDYESQ 253 (872)
Q Consensus 231 L---Vaes---lpf--~-------------------------------------------~Gd------~ILT~~DhEHn 253 (872)
. +|+. +|+ + .|. .++++ +.-|-
T Consensus 155 ~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s-~~aHy 233 (608)
T TIGR03811 155 EGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVP-QTKHY 233 (608)
T ss_pred HHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEEC-CCccH
Confidence 3 3432 221 0 000 23444 33455
Q ss_pred hHHHHHHHHHHcCc---EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHH---
Q 002866 254 SVNWMAQSAKEKGA---KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALA--- 326 (872)
Q Consensus 254 SVl~~~~~AkrkGa---eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~A--- 326 (872)
|+. +.|.-.|+ .|+.||++. +++++.+.|++.|....+ ....+-.|+-++-+-.+|.+=||+.| ..+
T Consensus 234 S~~---KAa~ilGlG~~~vv~VpvD~-~~rmd~~~L~~~I~~~~~--~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~ 307 (608)
T TIGR03811 234 SWL---KAADIIGIGLDQVIPVPVDS-NYRMDINELEKIIRKLAA--EKTPILGVVGVVGSTEEGAVDGIDKIVALRNKL 307 (608)
T ss_pred HHH---HHHHHcCCCcccEEEeecCC-CCcCCHHHHHHHHHHHHh--cCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHH
Confidence 553 44555677 588999986 689999999999975422 22234556667888899999999855 444
Q ss_pred HHCCc--EEEeeccccCCC-CC--------ccCC------------------CC---------CCCCcEEEEcccccCCC
Q 002866 327 QQNHW--HVLLDAGSLGPK-DM--------DSLG------------------LS---------LFRPDFIITSFYRVFGF 368 (872)
Q Consensus 327 re~G~--~VLVDAAQ~aG~-~m--------ipLD------------------Ls---------~l~~DFlv~S~HK~fG~ 368 (872)
+++|+ ++|||||-.+-. .+ +|.+ ++ --.+|-+++.+|||+..
T Consensus 308 ~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~ 387 (608)
T TIGR03811 308 MKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYI 387 (608)
T ss_pred HHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCccccccc
Confidence 56786 699999954310 00 0110 11 13699999999999877
Q ss_pred CCCceEEEEEeCCC
Q 002866 369 DPTGFGCLLIKKSV 382 (872)
Q Consensus 369 ~PtGvG~LyVRk~~ 382 (872)
|.++|+|++|+..
T Consensus 388 -Py~~G~ll~Rd~~ 400 (608)
T TIGR03811 388 -PYSAGGIVIQDIR 400 (608)
T ss_pred -CCCeEEEEEeCHH
Confidence 9999999999874
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7e-07 Score=99.94 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=114.9
Q ss_pred HHHHHHHHHhc----CCCCCCC-cEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHL----NIPENEY-GLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lL----gA~~dEY-~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
...|+.||+++ |.+.+.. .|++|+|+++|+.+++..+. .+||.|++.. ++.......++..|+++..+|+
T Consensus 74 ~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~----P~y~~~~~~~~~~g~~~~~v~~ 148 (403)
T PRK08636 74 YKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT-NPGDVAIVPD----PAYPIHSQAFILAGGNVHKMPL 148 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC-CCCCEEEEcC----CCCcchHHHHHhcCCEEEEEec
Confidence 36777777776 6432222 49999999999999999884 7899987652 1222334456668999999988
Q ss_pred cC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-C---CCCC
Q 002866 275 KW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-G---PKDM 345 (872)
Q Consensus 275 d~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-a---G~~m 345 (872)
+. .+..++.+.+.+.+....+ ...++++++.++.-+|.||..+|.+ +++.|++++++++.|-+-. . +...
T Consensus 149 ~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~ 227 (403)
T PRK08636 149 EYNEDFELDEDQFFENLEKALR-ESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKT 227 (403)
T ss_pred cccccCccChhhhhhHHHHHHh-hccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCC
Confidence 53 2245777755433322110 1124688888887789999999995 3466799999999998822 1 2100
Q ss_pred cc-CCCCCC-CCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 346 DS-LGLSLF-RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ip-LDLs~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.+ ..+... ..-+++.|+-|.||.+=--+|+++..++++..+
T Consensus 228 ~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~ 270 (403)
T PRK08636 228 PSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGAL 270 (403)
T ss_pred CChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHH
Confidence 01 112111 122456799999974223478877665555444
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-07 Score=101.51 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHhc----C---CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 201 DIKTRIMDHL----N---IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 201 eARerIA~lL----g---A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
+.|+.||+++ | ++++ +|++|+|+++|+.+++..+..++|+.|++..- .+... ...++..|+++..++
T Consensus 66 ~lr~~ia~~l~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p-~y~~~---~~~~~~~g~~~~~~~ 139 (364)
T PRK07865 66 ELREAIVGWLARRRGVTGLDPA--AVLPVIGSKELVAWLPTLLGLGPGDVVVIPEL-AYPTY---EVGARLAGATVVRAD 139 (364)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc--cEEEccChHHHHHHHHHHHcCCCCCEEEECCC-CcccH---HHHHHhcCCEEEecC
Confidence 5677888877 4 5565 59999999999999887775678999887532 22323 333455788887653
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC-CCCCccC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG-PKDMDSL 348 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a-G~~mipL 348 (872)
. .+++.. .+++++.++..+|.||.+++.+ +++.|+++|+++++|.+..- ..+--++
T Consensus 140 ~--------~~~l~~-----------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 200 (364)
T PRK07865 140 S--------LTELGP-----------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPV 200 (364)
T ss_pred C--------hhhCCc-----------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCC
Confidence 1 122211 2478888888999999999975 34567899999999999431 1100011
Q ss_pred C-CC------CCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 349 G-LS------LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 349 D-Ls------~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
. +. ...--+++.|+-|.||.+=..+|+++..++.++.+
T Consensus 201 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~ 245 (364)
T PRK07865 201 SILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAEL 245 (364)
T ss_pred ccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHH
Confidence 1 10 11234899999999974112378777666555444
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=97.92 Aligned_cols=209 Identities=16% Similarity=0.147 Sum_probs=134.0
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----C--CCCCCCcEEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----N--IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----g--A~~dEY~VVF 221 (872)
..|.|.-|--. +.|+.+++++.+ .+. +. ...|. |.. -+.+.|+.||+++ | .++++ +|+.
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~-------a~~-~~--~~~Y~-~~~--G~~~LReaia~~~~~~~~~~~~~~~-eiiv 94 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIE-------ALE-EG--GTHYT-PSA--GIPELREAIAEKYKRRYGLDVDPEE-EIIV 94 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHH-------HHh-cc--cCCCC-CCC--CCHHHHHHHHHHHHHHhCCCCCCCC-eEEE
Confidence 46778766554 456777776432 111 10 01233 321 2234555555443 4 33332 4999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC--CCCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW--PTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~--p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|.|+++|+.++..++ ..+||+||+..- ...+.. ...+-.|+++..++++. .+..++.++|++++..
T Consensus 95 t~Ga~~al~~~~~a~-~~pGDeVlip~P-~Y~~y~---~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------- 162 (393)
T COG0436 95 TAGAKEALFLAFLAL-LNPGDEVLIPDP-GYPSYE---AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP------- 162 (393)
T ss_pred eCCHHHHHHHHHHHh-cCCCCEEEEeCC-CCcCHH---HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-------
Confidence 999999999999887 478999876531 122233 33445799999999743 2567899999998864
Q ss_pred CCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc-ccCCCCC-ccCCCCCCCC----cEEEEcccccCCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG-SLGPKDM-DSLGLSLFRP----DFIITSFYRVFGFD 369 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA-Q~aG~~m-ipLDLs~l~~----DFlv~S~HK~fG~~ 369 (872)
+|+++++..=+|.||++++-+ ++..|++++++++.|-+ .-.-.+- .+..+-.+.. =+.+-|+=|.|+.
T Consensus 163 -ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m- 240 (393)
T COG0436 163 -KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM- 240 (393)
T ss_pred -cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc-
Confidence 599999999999999999975 34667999999999988 3222210 0111222222 3556699998884
Q ss_pred CCc--eEEEEEe-CCCcccc
Q 002866 370 PTG--FGCLLIK-KSVMGSL 386 (872)
Q Consensus 370 PtG--vG~LyVR-k~~i~~L 386 (872)
+| +|.++.. +.+++.+
T Consensus 241 -tGwRvG~~v~~~~~l~~~~ 259 (393)
T COG0436 241 -TGWRIGWVVGPPEELIAAL 259 (393)
T ss_pred -cccceeEeecChHHHHHHH
Confidence 45 8888877 4444433
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-07 Score=99.29 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 200 HDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.+.|+.||+++. +++++-.|+.|+|+++|+.+++..+. ..+||.|++.. +........++..|++++.+
T Consensus 72 ~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~----P~y~~~~~~~~~~g~~~v~v 147 (396)
T PRK09257 72 AAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSD----PTWPNHRAIFEAAGLEVKTY 147 (396)
T ss_pred HHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECC----CCcccHHHHHHHcCCcEEEE
Confidence 468888888763 24442123999999999999987664 37899987652 22223345566789999999
Q ss_pred ec-cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc-ccCCCC--
Q 002866 273 WF-KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG-SLGPKD-- 344 (872)
Q Consensus 273 pv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA-Q~aG~~-- 344 (872)
|. +.++..++.+.+++.+... .+++.++.++..+|.||+.++.+. +..|++++++++.|-+ +-...+
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~ 222 (396)
T PRK09257 148 PYYDAATKGLDFDAMLADLSQA-----PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLE 222 (396)
T ss_pred eccccccCccCHHHHHHHHHhC-----CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchH
Confidence 87 3223468999998887631 234688888999999999999863 4567899999999987 222110
Q ss_pred --CccC-CCCCCC-CcEEEEcccccCCCCCCc--eEEEEE
Q 002866 345 --MDSL-GLSLFR-PDFIITSFYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 345 --mipL-DLs~l~-~DFlv~S~HK~fG~~PtG--vG~LyV 378 (872)
..++ .+.... -=+++.|+=|.|+ |.| +|++++
T Consensus 223 ~~~~~~~~~~~~~~~vi~i~SfSK~~~--~~GlRiG~~~~ 260 (396)
T PRK09257 223 EDAYGLRAFAAAGLELLVASSFSKNFG--LYGERVGALSV 260 (396)
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCcCc--cccccceeEEE
Confidence 0000 011111 1277899999988 445 676764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=103.81 Aligned_cols=174 Identities=14% Similarity=0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc---
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK--- 275 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd--- 275 (872)
+.+..+++++++|.+ .+++|+++|.|++++. .+-.++||.|.+ ..|- .+.. ...+..|+.+.-++.+
T Consensus 73 ~~~lE~~va~~~G~~----~av~v~sGT~Al~ll~-~l~l~pGDeVps-n~~f-~Tt~---ahIe~~Gav~vDi~~dea~ 142 (450)
T TIGR02618 73 FYHLERTVRELYGFK----YVVPTHQGRGAENLLS-QIAIKPGDYVPG-NMYF-TTTR---YHQEKNGATFVDIIIDEAH 142 (450)
T ss_pred HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHH-HhCCCCcCEECC-ceeH-HHHH---HHHHhCCeEEEeeeccccc
Confidence 456777899999985 2999999999999875 555789997632 1110 1111 1124467755555332
Q ss_pred ------CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcHH---HH-HHHHHCCcEEEeeccccCCCC
Q 002866 276 ------WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQ---WM-ALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 276 ------~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe---~I-~~Are~G~~VLVDAAQ~aG~~ 344 (872)
..++.+++++|+++|..+ ...++.++++....|.. |...|+. .+ ..|+++|+.|++|||++++..
T Consensus 143 ~~~~~~p~~GniD~~~Le~aI~~~----~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA 218 (450)
T TIGR02618 143 DAQLNIPFKGNVDLKKLQKLIDEV----GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENA 218 (450)
T ss_pred ccccCCCCCCCcCHHHHHHHhccc----cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence 124788999999999742 11245677777777766 7887753 33 467999999999999988531
Q ss_pred Cc-------cCCCCC--------CCCcEEEEcccccCCCCCCceEEEEE-eC-CCcccccCC
Q 002866 345 MD-------SLGLSL--------FRPDFIITSFYRVFGFDPTGFGCLLI-KK-SVMGSLQNQ 389 (872)
Q Consensus 345 mi-------pLDLs~--------l~~DFlv~S~HK~fG~~PtGvG~LyV-Rk-~~i~~L~P~ 389 (872)
.. -.|.+- -.+|.+++|+||-++. |. |.+++ +. +++..++..
T Consensus 219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~-~~--GG~l~~~d~~l~~k~r~~ 277 (450)
T TIGR02618 219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV-NI--GGFLCMNDDEMFQSAKEL 277 (450)
T ss_pred hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC-CC--ceEEEeCCHHHHHHHHHH
Confidence 00 112111 1589999999999888 65 44444 44 455554433
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-06 Score=96.96 Aligned_cols=206 Identities=10% Similarity=0.084 Sum_probs=121.1
Q ss_pred CCceecccCCCCCC----cHHHHHHhhhcccccHHHHHHhhccCcCcCCC---chHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGFGLF----SYIQTLHYWESSTFSLSEITANLSNHALYGGA---EKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAtgp~----p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNp---sS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++..|||.++.+.+ .+.+++++.+ .+. ... +..++.. ...+..++.+++|+++++. + .++
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~-------~l~-~~g-~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~--~~~ 110 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVD-------ALK-RTG-SLHLSSSRTRVRSQILKDLEEALSELFGA--S--VLT 110 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHH-------HHH-HhC-CCCCCccchhhhhHHHHHHHHHHHHHhCC--C--EEE
Confidence 35789999877665 5777777543 121 110 0011111 1235778999999999997 3 355
Q ss_pred EeCCHHHHHHHHH----hhCCCCCCCe-EEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhc
Q 002866 221 FTVSRGSAFKLLA----ESYPFHTNKK-LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKR 295 (872)
Q Consensus 221 FTsnATeALnLVa----eslpf~~Gd~-ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~r 295 (872)
|++| ++|...++ .++ +.+|+. +++.....|.++..+....+ .+.+++.+|.. +.+++++++..
T Consensus 111 ~~sG-~~a~~~ai~~~~~~~-~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~------d~~~l~~~~~~--- 178 (402)
T PRK07505 111 FTSC-SAAHLGILPLLASGH-LTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHN------DLDALEDICKT--- 178 (402)
T ss_pred ECCh-HHHHHHHHHHHHhcc-cCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCC------CHHHHHHHHhc---
Confidence 6655 55544333 222 222443 55544456777654333232 46777777642 57888887743
Q ss_pred cCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccC---C-CC-Cc---cCCCCCCCCcEEEEcccccC
Q 002866 296 RKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLG---P-KD-MD---SLGLSLFRPDFIITSFYRVF 366 (872)
Q Consensus 296 r~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~a---G-~~-mi---pLDLs~l~~DFlv~S~HK~f 366 (872)
+++++.+..-+|.||.+.|++.+ +.|+++|+.+++|.+|.. | .. +. .+++...+..+++.|+=|.|
T Consensus 179 -----~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~ 253 (402)
T PRK07505 179 -----NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF 253 (402)
T ss_pred -----CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhh
Confidence 35677777778899999999754 577999999999999843 1 10 01 11210112346667899988
Q ss_pred CCCCCceEEEEE-eCCCcccc
Q 002866 367 GFDPTGFGCLLI-KKSVMGSL 386 (872)
Q Consensus 367 G~~PtGvG~LyV-Rk~~i~~L 386 (872)
|. + | |++.+ .++.++.+
T Consensus 254 ~~-~-G-g~~~~~~~~~~~~~ 271 (402)
T PRK07505 254 GA-S-G-GVIMLGDAEQIELI 271 (402)
T ss_pred hc-c-C-eEEEeCCHHHHHHH
Confidence 85 2 4 55544 33444433
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=95.83 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC--------CCCC-CeEEEecccCchhHHHHHHHH-----
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP--------FHTN-KKLLTMFDYESQSVNWMAQSA----- 262 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp--------f~~G-d~ILT~~DhEHnSVl~~~~~A----- 262 (872)
....+.-++++++++.+ .++|+.++|+|+..++.... ..+| ++|++..+--|..........
T Consensus 83 ~~~~~l~~~l~~~~~~~----~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~ 158 (401)
T PRK00854 83 DQLAPLYEELAALTGSH----KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDA 158 (401)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccc
Confidence 35566777888988752 49999999998887665431 1133 466655442355443322110
Q ss_pred ----HHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEE
Q 002866 263 ----KEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHV 333 (872)
Q Consensus 263 ----krkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~V 333 (872)
...+..+..+|. .+.++|++.|.. ++++|.+.++.|.+|.++| ++. .+.|+++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~------~d~~~le~~i~~--------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~l 224 (401)
T PRK00854 159 RGGFGPFTPGFRVVPF------GDAEALEAAITP--------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTL 224 (401)
T ss_pred cccCCCCCCCeEEeCC------CCHHHHHHHhCC--------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 000122333332 256888877742 5899999999999999998 764 46789999999
Q ss_pred Eeecccc-CCCCC--ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 334 LLDAGSL-GPKDM--DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 334 LVDAAQ~-aG~~m--ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++|.+|. +|..- ...+.....+|+++++ |++++.-.-+|++..+++.++.+.
T Consensus 225 I~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 225 ILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred EEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhccc
Confidence 9999987 54310 0012233568999987 987741012677887777766553
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.4e-07 Score=100.24 Aligned_cols=209 Identities=17% Similarity=0.107 Sum_probs=133.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
.|-.=+-|-+++++.+++++.+ ......+-.++-++ ....++.+.....+.++.-.+ .++.+.|.+.|+
T Consensus 28 ~v~~t~lG~s~~~~e~iea~~~--------~~~~~v~Le~~l~~--g~~~~R~~~~~~~~~~~~~ae-a~~ivnnn~aAV 96 (395)
T COG1921 28 TVLMTNLGRSLYSPEAIEAMKE--------AMRAPVELETDLKT--GKRGARLTELAELLCGLTGAE-AAAIVNNNAAAV 96 (395)
T ss_pred hheeccCCCccCCHHHHHHHHH--------Hhcccceeeeeccc--chhhHHHHHHHHHHhcccchh-heeeECCcHHHH
Confidence 4555667888888888887532 11111110111111 223333333333344554322 577788888888
Q ss_pred HHHHhhCCCCCCCeEEEeccc----CchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 230 KLLAESYPFHTNKKLLTMFDY----ESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~Dh----EHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
-++..++. .+.+++..+-+ .|..|.. ..+.-|+++..+- . ..+-+..+++.+|.. +|.+.
T Consensus 97 ll~~~al~--~~~EvVis~g~lV~gg~~~v~d---~~~~aG~~l~EvG--~-tn~t~~~d~~~AIne--------~ta~l 160 (395)
T COG1921 97 LLTLNALA--EGKEVVVSRGELVEGGAFRVPD---IIRLAGAKLVEVG--T-TNRTHLKDYELAINE--------NTALL 160 (395)
T ss_pred HHHHhhhc--cCCeEEEEccccccCCCCChhH---HHHHcCCEEEEec--c-cCcCCHHHHHHHhcc--------CCeeE
Confidence 88887765 35565544422 2344543 4455688887653 2 456788899988864 47777
Q ss_pred EEeCccCcccch--hcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC---CCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 306 VFPVQSRVTGAK--YSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS---LFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 306 a~p~vSNvTG~i--~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs---~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
-..|-+|. |.. .|++ .+..||++|+.|++|+++...-+ ...++. +.++|.+++|++|+||+ |+ .|++.-|
T Consensus 161 lkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllgG-Pq-aGii~Gk 236 (395)
T COG1921 161 LKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLGG-PQ-AGIIVGK 236 (395)
T ss_pred EEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcCC-Cc-cceEech
Confidence 66677764 443 3344 57889999999999999755311 123333 36899999999999999 88 8999999
Q ss_pred CCCcccccCC
Q 002866 380 KSVMGSLQNQ 389 (872)
Q Consensus 380 k~~i~~L~P~ 389 (872)
|++++.++..
T Consensus 237 KelI~~lq~~ 246 (395)
T COG1921 237 KELIEKLQSH 246 (395)
T ss_pred HHHHHHHHhh
Confidence 9999888764
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-07 Score=101.35 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEE-eCCHHHHHHHHHhhCCCCCCCeEEEec-cc-CchhHHHHHHH----HHHcCcEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVF-TVSRGSAFKLLAESYPFHTNKKLLTMF-DY-ESQSVNWMAQS----AKEKGAKV 269 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVF-TsnATeALnLVaeslpf~~Gd~ILT~~-Dh-EHnSVl~~~~~----AkrkGaeV 269 (872)
++..-+.+++.++||+++++|.+-+ .-+++.|...|..++- ++||.|+... .+ .|-+--..... +..+..++
T Consensus 66 ~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl-~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~ 144 (399)
T PF00464_consen 66 EIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL-KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFES 144 (399)
T ss_dssp HHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT--TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEE
T ss_pred HHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH-hhcCcEEecChhhcccccccccccccccccccceEEE
Confidence 5566699999999999877654443 3677788888888874 8999987543 21 12211111111 12234678
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCCC---CC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DM 345 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~m 345 (872)
...+++..++.||.+++++++... +.+|+.+...+ .=..+|++.++ .|++.|+++++|++|.+|. .+
T Consensus 145 ~~y~~d~~~~~ID~d~l~~~a~~~-------kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~ 215 (399)
T PF00464_consen 145 VPYPVDPDTGLIDYDELEKLAKEH-------KPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGL 215 (399)
T ss_dssp EEEEB-TTTSSB-HHHHHHHHHHH---------SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS
T ss_pred EeeeeecCCCeECHHHHHHHHhhc-------CCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehhe
Confidence 888898778999999999998765 47788887644 33456677664 6789999999999996431 01
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
.|=.+. .+|++++|.||.|.+ |.| |+++.+
T Consensus 216 ~~~P~~--~ADvvt~sThKtl~G-Prg-giI~~~ 245 (399)
T PF00464_consen 216 FPNPFP--YADVVTGSTHKTLRG-PRG-GIILTN 245 (399)
T ss_dssp S--GCC--TSSEEEEESSGGG-S-SS--EEEEES
T ss_pred ecCccc--cceEEEeeccccccc-cCc-eEEEEc
Confidence 222232 389999999999888 887 887778
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=96.09 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=125.8
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-cCchhHHHHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFD-YESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~D-hEHnSVl~~~~~AkrkGae 268 (872)
..||.. +..-+|||.+=|--. -+.|+++..|+-+++..+. ++||+||+... |- .+..-+....++.|++
T Consensus 59 i~NPT~----~vlE~RiAaLEGG~a----a~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYG-GT~~lf~~tl~~~Gi~ 128 (426)
T COG2873 59 IMNPTT----DVLEERIAALEGGVA----ALAVASGQAAITYAILNLA-GAGDNIVSSSKLYG-GTYNLFSHTLKRLGIE 128 (426)
T ss_pred ccCchH----HHHHHHHHHhhcchh----hhhhccchHHHHHHHHHhc-cCCCeeEeeccccC-chHHHHHHHHHhcCcE
Confidence 467753 334567888877532 3567888888888887774 78999986543 32 3444445557889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
|+++..+ +++.++++|.. +||+|-+-...|.-+.+.|++. ...||++|+.++||-+-..|. -
T Consensus 129 v~fvd~~------d~~~~~~aI~~--------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy---l 191 (426)
T COG2873 129 VRFVDPD------DPENFEAAIDE--------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY---L 191 (426)
T ss_pred EEEeCCC------CHHHHHHHhCc--------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce---e
Confidence 9998643 47889888864 6999999999999999999995 567899999999999966654 2
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
+.--++++|.++-|.-||.|+.-+.+|..+|.....
T Consensus 192 ~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~F 227 (426)
T COG2873 192 CRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKF 227 (426)
T ss_pred cchhhcCCCEEEEeecccccCCccccceEEEeCCcc
Confidence 333357999999999999887556688888776654
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=97.67 Aligned_cols=218 Identities=13% Similarity=0.054 Sum_probs=131.1
Q ss_pred HHHHHhhccc--CCC-Cceeccc---CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHH
Q 002866 136 IDQLRANEYL--HLS-PKVCLDY---CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMD 208 (872)
Q Consensus 136 ID~lR~~EFP--~L~-~~IYLDy---AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~ 208 (872)
...|.+..|- .|+ ..||.|- .+|++++..|+.+++- . ...|+ .|+ +.+..+++++
T Consensus 28 ~~~l~~ag~n~f~l~~~~v~IDLlSDS~T~aMs~~q~a~~~v-------------G-Dd~Yagd~s----~~~LE~~vAe 89 (460)
T PRK13237 28 EAAMKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDRQWAGMMI-------------G-DEAYAGSRN----FYHLEETVQE 89 (460)
T ss_pred HHHHHHcCCCcccCCcCcEEEECcccCCchhccHHHHHHHhh-------------c-chhhcCCCc----HHHHHHHHHH
Confidence 3444444452 222 3677774 4556667666554311 1 12344 344 3466778999
Q ss_pred hcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec---------cCCCC
Q 002866 209 HLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF---------KWPTL 279 (872)
Q Consensus 209 lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv---------d~p~g 279 (872)
++|.+ .+|+|+++|.|++++ ..+-.++|+.| +...+ +..........|+.+.-+.. +..++
T Consensus 90 ~lG~e----~aV~v~sGTaAl~ll-~~l~v~pGd~V-p~n~~----f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tg 159 (460)
T PRK13237 90 YYGFK----HVVPTHQGRGAENLL-SRIAIKPGQYV-PGNMY----FTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKG 159 (460)
T ss_pred HHCCC----eEEEeCCHHHHHHHH-HHhCCCCcCEE-CCccc----hHhhHHHHHhCCcEEEeeecccccccccCCCCCC
Confidence 99985 289999999999986 44556789865 22111 11111112445774443321 12257
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcH---HH-HHHHHHCCcEEEeeccccCCCCC-c-------
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSY---QW-MALAQQNHWHVLLDAGSLGPKDM-D------- 346 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PL---e~-I~~Are~G~~VLVDAAQ~aG~~m-i------- 346 (872)
.+|+++|+++|..+ ...+++|+++....|.. |...|+ +. ...|+++|+.|++|||++++... |
T Consensus 160 nlD~d~Le~~I~~~----~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y 235 (460)
T PRK13237 160 NVDLDKLQALIDEV----GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGY 235 (460)
T ss_pred CcCHHHHHHHhccc----cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccccc
Confidence 89999999999742 12457788877777887 677654 43 35679999999999999887210 0
Q ss_pred -cCCCC------CCCCcEEEEcccccCCCCCCceEEEEEeCC-Cccccc
Q 002866 347 -SLGLS------LFRPDFIITSFYRVFGFDPTGFGCLLIKKS-VMGSLQ 387 (872)
Q Consensus 347 -pLDLs------~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~-~i~~L~ 387 (872)
.-.+. -...|.+++|+||-++. |. =|++..+.+ +.+.++
T Consensus 236 ~~~~i~ei~~e~~s~aD~~t~S~~K~~~~-~~-GG~i~t~D~eL~~~~r 282 (460)
T PRK13237 236 QDKSIKEIVHEMFSYADGCTMSGKKDCLV-NI-GGFLAMNDEELFDEAK 282 (460)
T ss_pred CCCcHhHHhhhccCcCcEEEEeCCCCCCC-CC-ceEEEECCHHHHHHHH
Confidence 11111 12489999999998876 43 255555553 334433
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=97.05 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 200 HDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 200 eeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
...|+.||++++ ++++ .|++|+|+|+|+.+++..+. .+||.|++..-+ ++.... ....+.|+++..
T Consensus 98 ~~LR~aiA~~l~~~~~~~~~v~p~--~Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~-Y~~f~~--~~~~~~g~~vv~ 171 (447)
T PLN02607 98 KSFRQAMASFMEQIRGGKARFDPD--RIVLTAGATAANELLTFILA-DPGDALLVPTPY-YPGFDR--DLRWRTGVKIVP 171 (447)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHH--HeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCC-CcchHH--HHHhcCCcEEEE
Confidence 468888888875 4554 69999999999999998874 789998865321 122221 112246899988
Q ss_pred EeccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC---C-
Q 002866 272 AWFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG---P- 342 (872)
Q Consensus 272 Vpvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a---G- 342 (872)
++++..+ ..++.+++++++...++ .+.+++++.++.-+|.||..+|-+ ++..|+++++++++|-+-+. +
T Consensus 172 v~~~~~~~f~~~~~~le~a~~~a~~--~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 172 IHCDSSNNFQVTPQALEAAYQEAEA--ANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EeCCCCCCCcCCHHHHHHHHHHHHH--hCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 8876432 35788999988864321 234688899999999999999975 34667899999999998332 1
Q ss_pred CCCccC-CC-CCCC----Cc--EEEEcccccCCCCCCceEEEEE
Q 002866 343 KDMDSL-GL-SLFR----PD--FIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 343 ~~mipL-DL-s~l~----~D--Flv~S~HK~fG~~PtGvG~LyV 378 (872)
....++ .+ ...+ .+ .++-|+-|-||.+-.-+|+++.
T Consensus 250 ~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs 293 (447)
T PLN02607 250 SEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYS 293 (447)
T ss_pred CCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEE
Confidence 000010 00 0111 12 4667899988842233688876
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=94.92 Aligned_cols=208 Identities=11% Similarity=0.026 Sum_probs=127.3
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++..|||..+. +-.++.+++++.+. + ..+ .+..+. ....++.+++.++++++.+ .++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~-------~-~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 92 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQ-------A-QKL----TLTSRAFYNDVLGLAEKYITDLFGYD----KVL 92 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHH-------H-Hhc----ccccccccCHHHHHHHHHHHhCCCCC----EEE
Confidence 45678888643 12467777765431 1 111 111111 1246788999999988752 489
Q ss_pred EeCCHHHHHHHHHhhCC--------C-CCCCeEEEecccCchhHHHHHHHHHHcCc---------EEEEEeccCCCCccC
Q 002866 221 FTVSRGSAFKLLAESYP--------F-HTNKKLLTMFDYESQSVNWMAQSAKEKGA---------KVYSAWFKWPTLKLC 282 (872)
Q Consensus 221 FTsnATeALnLVaeslp--------f-~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa---------eV~~Vpvd~p~g~Id 282 (872)
|+.++|+|+..+..... + ..+++||+...--|............... .+..++ . .+
T Consensus 93 ~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~d 166 (400)
T PTZ00125 93 PMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD--Y----ND 166 (400)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC--C----CC
Confidence 99999998766554321 1 12355665543335555433221110000 011111 1 26
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
.++|++.+.. .++++|.+..+.|.+|.++| ++ +.+.|+++|+++++|.++. .|.. +...+.....
T Consensus 167 ~~~le~~l~~-------~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~ 239 (400)
T PTZ00125 167 VEALEKLLQD-------PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK 239 (400)
T ss_pred HHHHHHHhCC-------CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCC
Confidence 7888887741 25889999888999999998 76 4567899999999999975 3310 1233444567
Q ss_pred CcEEEEcccccCCCCCC-ceEEEEEeCCCccccc
Q 002866 355 PDFIITSFYRVFGFDPT-GFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~Pt-GvG~LyVRk~~i~~L~ 387 (872)
+|++++| |.+++ +. .+|+++++++.++.+.
T Consensus 240 pd~~~~s--K~l~~-g~~~ig~v~~~~~~~~~~~ 270 (400)
T PTZ00125 240 PDIVLLG--KALSG-GLYPISAVLANDDVMLVIK 270 (400)
T ss_pred CCEEEEc--ccccC-CCcCcEEEEEcHHHHhhcc
Confidence 8999887 98875 32 6899999888776554
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=103.15 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+|.+..|+++|++. +-..|.|+|.++..++.+.- ++||.||+.- ..|-||..-+ .-.|++.++++-.+
T Consensus 205 G~I~eAq~~aA~~fgA~~---t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~R-N~HKSv~~al---~L~ga~Pvyl~P~~ 276 (755)
T PRK15029 205 GAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQACM-TDNDVVVVDR-NCHKSIEQGL---ILTGAKPVYMVPSR 276 (755)
T ss_pred cHHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHHhc-CCCCEEEeec-ccHHHHHHHH---HHcCCeEEEecccc
Confidence 578899999999999974 46678999999998887763 7899988764 4688887533 33689999886443
Q ss_pred CC----CccC-----HHHHHHHHhhhhc--cCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC-
Q 002866 277 PT----LKLC-----STDLRKQISSKKR--RKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK- 343 (872)
Q Consensus 277 p~----g~Id-----~edLe~~I~~~~r--r~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~- 343 (872)
+. +.++ +++++++|..... .....+.+.++++.- +--|+.++++ ++..||++|+.+|||.|+.+..
T Consensus 277 ~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~ 355 (755)
T PRK15029 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEEEECccccccc
Confidence 22 2344 8899999875421 011223446666554 4579999998 5678899999999999976521
Q ss_pred --CCcc--CCC-----CCCCCc-EEEEcccccCCCCCCceEEEEEeCC
Q 002866 344 --DMDS--LGL-----SLFRPD-FIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 344 --~mip--LDL-----s~l~~D-Flv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
...| --+ ...++| +++-|.||.+++ -+...+|.++..
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~ 402 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREG 402 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCC
Confidence 0011 011 125788 999999999988 888889998765
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=95.24 Aligned_cols=168 Identities=12% Similarity=0.041 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCC-CCCCcEEEeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHH---------cCcE
Q 002866 200 HDIKTRIMDHLNIP-ENEYGLVFTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKE---------KGAK 268 (872)
Q Consensus 200 eeARerIA~lLgA~-~dEY~VVFTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~Akr---------kGae 268 (872)
.+.-+.++++++.. ++ .|+||+++++|+..+...... .| +++++....-|............ .+..
T Consensus 88 ~~la~~l~~~~~~~~~~--~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 164 (398)
T PRK03244 88 IALAERLVELLGAPEGG--RVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGG 164 (398)
T ss_pred HHHHHHHHHhCCCCCCC--EEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCC
Confidence 46777888988854 23 599999999999988774332 34 34554422224433332211100 0112
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccC-C
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLG-P 342 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~a-G 342 (872)
+..+|. .+.+.+++.+. .++++|.+..+.|.+|.+.| ++. .+.|+++|+++++|-++.. |
T Consensus 165 ~~~~~~------~d~~~l~~~~~--------~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 230 (398)
T PRK03244 165 VEHVPY------GDVDALAAAVD--------DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG 230 (398)
T ss_pred ceEeCC------CCHHHHHHhhc--------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 222221 15677777663 25788888889999999998 654 4678999999999999742 2
Q ss_pred CC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 343 KD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 343 ~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.. +..+......+|.+++| |++|+ ...+|+++++++.++.+.
T Consensus 231 r~g~~~~~~~~~~~pDi~t~s--K~l~~-G~~ig~~~~~~~~~~~~~ 274 (398)
T PRK03244 231 RTGAWFAHQHDGVTPDVVTLA--KGLGG-GLPIGACLAFGPAADLLT 274 (398)
T ss_pred ccchHHhhhhhCCCCCEEEEc--hhhhC-CcccEEEEEcHHHHhhcc
Confidence 10 01223345679987664 99884 345899999888665553
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=94.96 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
..+.|++||+++|.+++ .|++|+|+++++.+++.. +.+| .+++. + ++...+...++..|+++..+|++..
T Consensus 42 ~~~lr~~ia~~~~~~~~--~I~it~Gs~~~l~~~~~~--~~~~-~vv~~-~---P~y~~y~~~~~~~G~~v~~vp~~~~- 111 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI--KVLIGPGLTHFIYRLLSY--INVG-NIIIV-E---PNFNEYKGYAFTHGIRISALPFNLI- 111 (332)
T ss_pred HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHH--hCCC-cEEEe-C---CChHHHHHHHHHcCCeEEEEeCCcc-
Confidence 35899999999999877 499999999999999863 3555 45544 2 3344556677889999999998642
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc--cCCCCCcc-CCC-
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS--LGPKDMDS-LGL- 350 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ--~aG~~mip-LDL- 350 (872)
..+.+ .+.. .+++++.++.-+|.||+.+|.+. ++.|+++++++++|-+= +......+ ..+
T Consensus 112 -~~~~~----~l~~-------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~ 179 (332)
T PRK06425 112 -NNNPE----ILNN-------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLN 179 (332)
T ss_pred -cCcHH----HHhh-------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHh
Confidence 23332 2321 14788888899999999999753 45678899999999882 22110001 111
Q ss_pred CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
...+-=.++.||=|.||- .| +|.++..+++++.+.
T Consensus 180 ~~~~~vi~~~SfSK~~~l--~GlRiGy~v~~~~li~~l~ 216 (332)
T PRK06425 180 RSYGNVIIGRSLTKILGI--PSLRIGYIATDDYNMKISR 216 (332)
T ss_pred ccCCCEEEEeecHHhcCC--chhhheeeecCHHHHHHHH
Confidence 111223677899999994 26 698887777665554
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=93.25 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-C-C----CCCeEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-F-H----TNKKLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f-~----~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
....+..+++++++|.+ .++++.|+++|+.+++.... + . ++++|++....-|......... +....
T Consensus 69 ~~~~~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~----~~~~~ 140 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD----RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA----TGQPK 140 (379)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh----cCChh
Confidence 45678899999999874 49999999999988776431 1 1 2678776543224333222111 11110
Q ss_pred ----EEeccCCCCcc----CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchh-c---HH-HHHHHHHCCcEEEeec
Q 002866 271 ----SAWFKWPTLKL----CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-S---YQ-WMALAQQNHWHVLLDA 337 (872)
Q Consensus 271 ----~Vpvd~p~g~I----d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-P---Le-~I~~Are~G~~VLVDA 337 (872)
..++.. +... +.+++++.+.. ++++|.+...+|.+|... + ++ ++..|+++|+.+++|.
T Consensus 141 ~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~--------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De 211 (379)
T TIGR00707 141 YQKGFEPLVP-GFSYAPYNDIESLKKAIDD--------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDE 211 (379)
T ss_pred hhccCCCCCC-CceeeCCCCHHHHHHHhhh--------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 011110 0111 57788777753 478899998888888753 4 43 3466789999999999
Q ss_pred ccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 338 GSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 338 AQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++. .+.. ..+++.....+|+++ +.|.|++ ...+|+++.++++++.+.
T Consensus 212 ~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~-G~riG~~~~~~~~~~~~~ 261 (379)
T TIGR00707 212 VQTGIGRTGKFFAYEHYGIEPDIIT--LAKGLGG-GVPIGATLAKEEVAEAFT 261 (379)
T ss_pred cccCCCccchhhhHHhcCCCCCEEE--EcccccC-CcccEEEEEcHHHHhhhc
Confidence 975 3321 012223344678764 5799984 456999998887766554
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=97.18 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=123.9
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
..|+.|++++ | |+++ .|++|+|+++|+.++...+- ++||.|++. .++....++..+..|+++..||+
T Consensus 136 ~LR~~ia~~l~~~~g~~~~~~--~IiiT~G~q~al~l~~~~l~-~pGd~v~vE----~PtY~~~~~~~~~~g~~~~~vp~ 208 (459)
T COG1167 136 ELREAIAAYLLARRGISCEPE--QIVITSGAQQALDLLLRLLL-DPGDTVLVE----DPTYPGALQALEALGARVIPVPV 208 (459)
T ss_pred HHHHHHHHHHHHhcCCccCcC--eEEEeCCHHHHHHHHHHHhC-CCCCEEEEc----CCCcHHHHHHHHHcCCcEEecCC
Confidence 4454444443 4 4554 69999999999999999874 589998864 34555667778889999999999
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc-ccCCCCCc-cC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG-SLGPKDMD-SL 348 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA-Q~aG~~mi-pL 348 (872)
|.. -++++.|++.+... ...-++++|..+|.||+.++++ +++.|++++++++=|-. ...-.+.- +.
T Consensus 209 d~~--G~~~e~le~~~~~~------~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~ 280 (459)
T COG1167 209 DED--GIDPEALEEALAQW------KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP 280 (459)
T ss_pred CCC--CCCHHHHHHHHhhc------CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence 853 47999999988753 1356899999999999999995 46788999999999887 22111000 11
Q ss_pred CCCCC---CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 GLSLF---RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l---~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+..+ +==+++.||=|.+.+ =..+|.|++.+..++.+.
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l~P-glRlG~vv~p~~~~~~~~ 321 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTLAP-GLRLGYVVAPPELIEKLL 321 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhccc-ccceeeeeCCHHHHHHHH
Confidence 22222 334899999999875 456888887777665543
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=97.23 Aligned_cols=180 Identities=9% Similarity=0.046 Sum_probs=118.4
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ | ++++ +|++|+|+++|+.+++..+-..+||.|++.. ++.......++..|++++.++
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~----P~Y~~y~~~~~~~g~~~v~v~ 183 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQILNAVIRGEKDGVLVPV----PQYPLYSATISLLGGTLVPYY 183 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChh--hEEEcccHHHHHHHHHHHHcCCCCCEEEEeC----CCCccHHHHHHHcCCEEEEEe
Confidence 46888888877 6 4555 5999999999999999887446899987652 222233444566899999998
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc--cC--CC-
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS--LG--PK- 343 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ--~a--G~- 343 (872)
++.. +..++.++|++.+...+ ....+++++.++.-+|.||.+++.+. +..|++++++|+.|-+- +. +.
T Consensus 184 ~~~~~~~~~d~~~le~~i~~~~--~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~ 261 (407)
T PLN02368 184 LEESENWGLDVNNLRQSVAQAR--SKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER 261 (407)
T ss_pred cccccCCCCCHHHHHHHHHHHh--hcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 8642 24588999999886421 11235888888888999999999863 35678999999999872 22 21
Q ss_pred CCccC-----CCC----CCCCcEEEEcccccC-CCCCCceEEEEE---eCCCccccc
Q 002866 344 DMDSL-----GLS----LFRPDFIITSFYRVF-GFDPTGFGCLLI---KKSVMGSLQ 387 (872)
Q Consensus 344 ~mipL-----DLs----~l~~DFlv~S~HK~f-G~~PtGvG~LyV---Rk~~i~~L~ 387 (872)
...++ ++. ...-=+++.|+-|.| |-+=--+|.+++ .++.++.+.
T Consensus 262 ~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~ 318 (407)
T PLN02368 262 PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIY 318 (407)
T ss_pred CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHH
Confidence 00110 110 011226678999987 531123787774 444544443
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-06 Score=95.95 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=123.9
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhc---cCcCcCCCchHHHHHHHHHHHHHhc---CCCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLS---NHALYGGAEKGTVEHDIKTRIMDHL---NIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~---~~~~ygNpsS~~~ieeARerIA~lL---gA~~dEY~VVF 221 (872)
+.+.|+.+-... +++.+.+++.+ ....+. ....|+ |. .-....|+.||+++ +++++ +|++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~Y~-p~--~g~~~lr~aia~~~~~~~~~~d--~I~i 100 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHN--------AVDELASEETFRGYG-PE--QGYPFLREAIAENDYRGRIDPE--EIFI 100 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHH--------HHhcccccccccCCC-CC--CCCHHHHHHHHHHHHhcCCCHH--HEEE
Confidence 478888776553 45556665322 111110 001232 21 12347899999876 67776 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCc-----------EEEEEeccCCCCccCHHHHHHHH
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA-----------KVYSAWFKWPTLKLCSTDLRKQI 290 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa-----------eV~~Vpvd~p~g~Id~edLe~~I 290 (872)
|+|+++|+.++... +.+|+.|++.. ++...+...++..|+ ++..+|.+..+ .+..+ +.
T Consensus 101 t~Ga~~al~~l~~l--~~~gd~Vlv~~----P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-~~--- 169 (402)
T TIGR03542 101 SDGAKCDVFRLQSL--FGSDNTVAVQD----PVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKEN-NFIPD-LP--- 169 (402)
T ss_pred CCCcHHHHHHHHHh--cCCCCEEEEeC----CCCcchHHHHHHcCCccccccccccceEEEeecchhh-CCCCC-cc---
Confidence 99999999987543 36889887652 122234455666788 88888875321 12111 11
Q ss_pred hhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--CCCCCccCCCCCC----CCcEEEE
Q 002866 291 SSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--GPKDMDSLGLSLF----RPDFIIT 360 (872)
Q Consensus 291 ~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--aG~~mipLDLs~l----~~DFlv~ 360 (872)
. ..++++|.++.-+|.||+.++.+ ++..|+++++++++|-+.. ......+..+..+ ..-+++.
T Consensus 170 ~-------~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~ 242 (402)
T TIGR03542 170 E-------EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFR 242 (402)
T ss_pred c-------cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEe
Confidence 0 12578999889999999999964 3466789999999999843 2111012222222 1236688
Q ss_pred cccccCCCCCCceEEEEEeCCC
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
|+=|.||.+=..+|++++.+..
T Consensus 243 SfSK~~g~pGlRiG~~i~~~~l 264 (402)
T TIGR03542 243 SFSKTAGFTGVRLGWTVVPKEL 264 (402)
T ss_pred cCccccCCCCcceEEEEecHHH
Confidence 9999998422337888876554
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=94.67 Aligned_cols=197 Identities=12% Similarity=0.211 Sum_probs=130.1
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC---CCCCCCcEEEeCCH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN---IPENEYGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg---A~~dEY~VVFTsnA 225 (872)
.+.|+.+-... .|+.+++++.+ .+... ....|..+. ..+.|+.||++++ ++++ .|++|+|+
T Consensus 21 ~i~l~~~~~~~~~p~~~~~~~~~-------~~~~~--~~~~Y~~~~----~~~Lr~aia~~~~~~~~~~~--~i~it~Ga 85 (335)
T PRK14808 21 RTYLALNENPFPFPEDLVDEVFR-------RLNSD--TLRIYYDSP----DEELIEKILSYLDTDFLSKN--NVSVGNGA 85 (335)
T ss_pred eeEecCCCCCCCCCHHHHHHHHH-------Hhhhh--hhhcCCCCC----hHHHHHHHHHHhCCCCCCcc--eEEEcCCH
Confidence 67777655443 45666776432 11111 011233332 4579999999999 7776 49999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
++++.++...+ +.|++. + ++.......++..|+++..+|.+. ++.++... +. +++++
T Consensus 86 ~~~i~~~~~~~-----d~v~v~-~---P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~----~~---------~~~~i 142 (335)
T PRK14808 86 DEIIYVMMLMF-----DRSVFF-P---PTYSCYRIFAKAVGAKFLEVPLTK-DLRIPEVN----VG---------EGDVV 142 (335)
T ss_pred HHHHHHHHHHh-----CcEEEC-C---CCHHHHHHHHHHcCCeEEEecCCC-cCCCChhH----cc---------CCCEE
Confidence 99999999887 456554 2 344456667788899999999864 34333221 11 36899
Q ss_pred EEeCccCcccchhcHHHHHHHHHCCcEEEeeccc--cCCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 306 VFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGS--LGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ--~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
.++.-+|.||..++.+.+...-++++++++|-+- +.+..+.++ +....-=+++.|+=|.||. .| +|+++..++
T Consensus 143 ~i~nP~NPTG~~~s~~~l~~l~~~~~~ii~DE~Y~~f~~~~~~~~-~~~~~~vi~~~S~SK~~~l--~GlRvG~~v~~~~ 219 (335)
T PRK14808 143 FIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDL-LKKYENLAVIRTFSKAFSL--AAQRIGYVVSSEK 219 (335)
T ss_pred EEeCCCCCCCCCcCHHHHHHHHhcCCEEEEECchhhhcCCchHHH-HHhCCCEEEEEechhhccC--cccceEEEEeCHH
Confidence 9999999999999998665444689999999982 222211111 1222234788999999993 35 799998877
Q ss_pred Cccccc
Q 002866 382 VMGSLQ 387 (872)
Q Consensus 382 ~i~~L~ 387 (872)
+++.+.
T Consensus 220 ~~~~l~ 225 (335)
T PRK14808 220 FIDAYN 225 (335)
T ss_pred HHHHHH
Confidence 666553
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=99.21 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHH-HcCcEEE
Q 002866 200 HDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAK-EKGAKVY 270 (872)
Q Consensus 200 eeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-rkGaeV~ 270 (872)
...|+.||++++ ++++ .|++|+|+++|+.+++..+. .+||.|++..-+ +.... ..+. ..|+++.
T Consensus 89 ~~LR~aiA~~l~~~~~~~~~v~~~--~Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~-Y~~~~---~~~~~~~g~~~v 161 (468)
T PLN02450 89 PAFKNALAEFMSEIRGNKVTFDPN--KLVLTAGATSANETLMFCLA-EPGDAFLLPTPY-YPGFD---RDLKWRTGVEIV 161 (468)
T ss_pred HHHHHHHHHHHHHhhCCCCCcChH--HeEEccChHHHHHHHHHHhC-CCCCEEEECCCC-CCchH---HHHhhcCCcEEE
Confidence 468888998885 4665 59999999999999999884 789998875321 12221 2233 4799999
Q ss_pred EEeccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc
Q 002866 271 SAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG 338 (872)
Q Consensus 271 ~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA 338 (872)
.+|.+. .+..++.+++++.+.... +...+++++.++.-+|.||..+|.+. +..|+++++++++|-+
T Consensus 162 ~v~~~~~~~~~~~~~~le~~~~~~~--~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~ 232 (468)
T PLN02450 162 PIHCSSSNGFQITESALEEAYQQAQ--KLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEI 232 (468)
T ss_pred EEecCCccCCcCCHHHHHHHHHHHH--hcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcc
Confidence 998753 344567788888775421 12346788888888999999999863 4567899999999988
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=86.17 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
...|+.+|++.|. .|++|+|+++|+.+++..+ .+|+.|++.. ++...+...++..|+++..++
T Consensus 43 ~~l~~~ia~~~~~-----~I~vt~G~~~al~~~~~~~--~~gd~vlv~~----P~y~~~~~~~~~~g~~~~~~~------ 105 (311)
T PRK08354 43 EWLEEEFSKLFGE-----PIVITAGITEALYLIGILA--LRDRKVIIPR----HTYGEYERVARFFAARIIKGP------ 105 (311)
T ss_pred HHHHHHHHHHHCC-----CEEECCCHHHHHHHHHHhh--CCCCeEEEeC----CCcHHHHHHHHHcCCEEeecC------
Confidence 4689999999983 3999999999999888544 3789887652 233345566777899886543
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCCCCccCCCCCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPKDMDSLGLSLFR 354 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~l~ 354 (872)
++.+.|++.+. +++++.++.-+|.||..+|.+. ++.|+++|+++++|-+-. ...+...+ + ..
T Consensus 106 -~d~~~l~~~~~---------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~--~-~~ 172 (311)
T PRK08354 106 -NDPEKLEELVE---------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP--E-GE 172 (311)
T ss_pred -CCHHHHHHhhc---------CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc--C-CC
Confidence 45677776653 2456777777899999999863 355688999999999831 11100111 1 23
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEE
Q 002866 355 PDFIITSFYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG--vG~LyV 378 (872)
--+++.|+=|.||- .| +|.++.
T Consensus 173 ~vi~~~S~SK~~~l--~GlRiG~~v~ 196 (311)
T PRK08354 173 NIIKLRTFTKSYGL--PGIRVGYVKG 196 (311)
T ss_pred cEEEEeccHhhcCC--ccceeeeeee
Confidence 34788999999984 25 687765
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.1e-06 Score=97.52 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+...|+.||+++ | ++++ +|++|+|+++|+.++...+--.+||.|++.. +........++..|++++.+
T Consensus 170 ~~~lReaIA~~~~~r~g~~~~pe--~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~----P~Y~~y~~~~~~~g~~~v~~ 243 (534)
T PLN02231 170 IKGLRDAIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSEKDGILCPI----PQYPLYSASIALHGGTLVPY 243 (534)
T ss_pred cHHHHHHHHHHHHhccCCCCCcc--cEEEeCCHHHHHHHHHHHhccCCCCEEEEeC----CCChhHHHHHHHcCCEEEEE
Confidence 457888888887 4 4454 6999999999999999987434689887653 12222234456679999999
Q ss_pred eccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc
Q 002866 273 WFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG 338 (872)
Q Consensus 273 pvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA 338 (872)
+++..+ ..++.++|++.+...+ ....+++++.+..-+|.||.+++.+. +..|++++++++.|-+
T Consensus 244 ~l~~~~~~~~d~~~Le~~l~~~~--~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv 312 (534)
T PLN02231 244 YLDEATGWGLEISELKKQLEDAR--SKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV 312 (534)
T ss_pred ecCcccCCCCCHHHHHHHHHHHh--hcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 987432 3689999999886432 12225788888888999999999863 4667899999999987
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=88.38 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=108.6
Q ss_pred HHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCC-CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 201 DIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPF-HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 201 eARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf-~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
+.|+.||+++ | ++++ .|++|+|+++|+.+++..+-+ .+|+.|++.. ++.......++..|+++..++
T Consensus 64 ~lr~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~----P~y~~~~~~~~~~g~~v~~v~ 137 (374)
T PRK05839 64 SLREAQRGFFKRRFKIELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPN----PFYQIYEGAAIASRAKVLLMP 137 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECC----CCchhhHHHHHhcCCEEEEee
Confidence 4666665554 6 5555 599999999999998887644 4678877642 233334455677899999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCCC-Cc
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPKD-MD 346 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~~-mi 346 (872)
.+.. +..++..+. .+ .+++++.++.-+|.||+.+|.+. +..|+++|+++++|-+-. .-.+ ..
T Consensus 138 ~~~~~~~~~d~~~~--~~---------~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~ 206 (374)
T PRK05839 138 LTKENDFTPSLNEK--EL---------QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP 206 (374)
T ss_pred cccccCCcCCcchh--hh---------ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCC
Confidence 8632 223332221 12 14789999999999999999863 456789999999998821 1100 00
Q ss_pred c--CCC------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 347 S--LGL------SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 347 p--LDL------s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+ +++ ...+-=+++.|+-|.||.+=.-+|+++..++.++.+
T Consensus 207 ~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 207 PSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKY 254 (374)
T ss_pred CCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHH
Confidence 1 111 111222788999998875223488888766555443
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=91.69 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=108.2
Q ss_pred HHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-ccCchhHHHHHHHHHHcCcEEEEE
Q 002866 200 HDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMF-DYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~-DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.+.|+.||+++ | ++++ +|++|+|+++|+.+++. + ..+||.|++.. .|. .... . .....|+++..+
T Consensus 76 ~~LReaia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~-l-~~~Gd~Vlv~~P~Y~--~~~~-~-~~~~~g~~~v~v 147 (433)
T PRK06855 76 LETREFLAELNNKRGGAQITPD--DIIFFNGLGDAIAKIYG-L-LRREARVIGPSPAYS--THSS-A-EAAHAGYPPVTY 147 (433)
T ss_pred HHHHHHHHHHHHhccCCCCCHh--HEEEcCcHHHHHHHHHH-h-cCCCCeEEEeCCCCc--hHHH-H-HHHhcCCeEEEE
Confidence 46888888886 3 5555 59999999999999874 4 57899987652 222 1111 1 122358888888
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc--cC--CC
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS--LG--PK 343 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ--~a--G~ 343 (872)
|++.. +..++.++|++.+.. .++++++.++.-+|.||..+|.+. +..|++++++++.|-+- +. +.
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~------~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~ 221 (433)
T PRK06855 148 RLDPENNWYPDLDDLENKVKY------NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK 221 (433)
T ss_pred ecccccCCCCCHHHHHHHHhc------CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 87632 235789999988853 124677887888999999999863 35678999999999983 21 21
Q ss_pred CCccCCCCCC---CCcEEEEcccccCCCCCCceEEEEE
Q 002866 344 DMDSLGLSLF---RPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 344 ~mipLDLs~l---~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
. ...+..+ ..-+++.|+=|.|+.+=--+|.+++
T Consensus 222 ~--~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~ 257 (433)
T PRK06855 222 K--TVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEV 257 (433)
T ss_pred C--CCCHHHHcCcCCeEEEecCccccCCCcceEEEEEE
Confidence 1 1122111 1237889999988741123666654
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-05 Score=87.55 Aligned_cols=159 Identities=11% Similarity=0.133 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
...|+.||++++. + .|++|+|+++||.++.. ..+|++|++.. ++.......++..|+++..+|++
T Consensus 52 ~~Lr~~ia~~~~~--~--~I~it~Gs~~al~~~~~---~~~gd~v~v~~----P~y~~~~~~~~~~g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGA--P--QLLPVAGSQAAIQALPR---LRAPGRVGVLS----PCYAEHAHAWRRAGHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCC--C--CEEECcCHHHHHHHHHH---ccCCCEEEEcC----CChHHHHHHHHHcCCeEEEechh----
Confidence 4789999999986 3 49999999999999864 35789987652 34445566677889999887642
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCC-CccCCCCCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKD-MDSLGLSLFR 354 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~-mipLDLs~l~ 354 (872)
++++.+. +++++.+..-+|.||+.+|.+. +..++++++++++|-+-.-... .....+...+
T Consensus 117 -----~~~~~~~---------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~ 182 (330)
T PRK05664 117 -----EVEAALD---------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRP 182 (330)
T ss_pred -----hHhhhhc---------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCC
Confidence 3444442 3566666666899999999863 3456789999999987421110 0012222111
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
-=+++.|+-|.||.+=--+|.++..++.++.+.
T Consensus 183 ~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~ 215 (330)
T PRK05664 183 GLIVLRSFGKFFGLAGARLGFVLAEPALLRALA 215 (330)
T ss_pred CEEEEeeccccccCCCcceEEEEeCHHHHHHHH
Confidence 127899999999841123898887766655543
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-05 Score=91.56 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=97.2
Q ss_pred CcEEEeCCHHHHHHHHHhhC----CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC------CccCHHHH
Q 002866 217 YGLVFTVSRGSAFKLLAESY----PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT------LKLCSTDL 286 (872)
Q Consensus 217 Y~VVFTsnATeALnLVaesl----pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~------g~Id~edL 286 (872)
.+|+.|.|+|+|+.+++.++ -..+||+|++..-. ........+ ....|++++.++.+..+ ..++.++|
T Consensus 156 ~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~-y~~y~~~~~-l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l 233 (521)
T TIGR03801 156 FDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPI-FTPYLEIPE-LPRYDFEVVRIKADEMTEDGTHTWQYPDKEL 233 (521)
T ss_pred CeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCC-cHHHHHHHH-HhcCCcEEEEeecccccccccccCCCCHHHH
Confidence 36999999999999988763 25789998765321 122222211 22347888877765321 45788888
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHC--CcEEEeeccc--cCCCCCccCCCCCCCC--c
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQN--HWHVLLDAGS--LGPKDMDSLGLSLFRP--D 356 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~--G~~VLVDAAQ--~aG~~mipLDLs~l~~--D 356 (872)
++++. ++++++.+..-+|.||++++.+. +..|+++ +++|+.|=+= +... ...+-..-+ -
T Consensus 234 ~~~~~--------~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~~~~v 302 (521)
T TIGR03801 234 EKLRD--------PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAELPYNT 302 (521)
T ss_pred HHhcC--------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhCCCCE
Confidence 76553 35888888788999999999753 3556765 8999999872 2321 111211122 3
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 357 FIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 357 Flv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
+++.|+-|.||. +| +|.++..+.
T Consensus 303 I~v~SfSK~fg~--~G~RlG~i~~~~~ 327 (521)
T TIGR03801 303 IGVYSFSKYFGA--TGWRLGTIALHKD 327 (521)
T ss_pred EEEEcchhhccC--chhhhhhhhcCch
Confidence 778899999984 35 777776543
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=88.99 Aligned_cols=205 Identities=13% Similarity=0.155 Sum_probs=142.4
Q ss_pred CceecccCCCCCC-cHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC-CCCCCCcEEEeCCHH
Q 002866 149 PKVCLDYCGFGLF-SYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN-IPENEYGLVFTVSRG 226 (872)
Q Consensus 149 ~~IYLDyAAtgp~-p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg-A~~dEY~VVFTsnAT 226 (872)
..+.|+.+=...- |+.+++++.+ .... ...|-.+ ...+.|+++|++.| .+++ .|+.+.|++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~--------~~~~---~~rYPd~----~~~~l~~a~a~~~~~~~~~--~V~~gnGsd 85 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRA--------ALDK---LNRYPDP----DYRELRAALAEYYGVVDPE--NVLVGNGSD 85 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHH--------HHHh---hccCCCC----cHHHHHHHHHHHhCCCCcc--eEEEcCChH
Confidence 5677776555432 3555554321 1111 1245444 34689999999999 6665 488899999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+.|.++.+.+. .+||.+++.. ++.......|+..|+++..+|.+. ..++.+.+...+.. +++||.
T Consensus 86 e~i~~l~~~~~-~~gd~vl~~~----Ptf~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~~--------~~~lv~ 150 (356)
T COG0079 86 ELIELLVRAFV-EPGDTVLIPE----PTFSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIRD--------KTKLVF 150 (356)
T ss_pred HHHHHHHHHhh-cCCCEEEEcC----CChHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhhc--------CCCEEE
Confidence 99999999985 6788888762 122222345677899999999864 56788888777753 488999
Q ss_pred EeCccCcccchhcHHHHHHHHH---CCcEEEeecc--ccCCCCCccCCCCCCCCc--EEEEcccccCCCCCCceEEEEEe
Q 002866 307 FPVQSRVTGAKYSYQWMALAQQ---NHWHVLLDAG--SLGPKDMDSLGLSLFRPD--FIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I~~Are---~G~~VLVDAA--Q~aG~~mipLDLs~l~~D--Flv~S~HK~fG~~PtGvG~LyVR 379 (872)
++.=+|.||..++.+.+....+ .++.|+||-| .+++. ..+.+-. ..+ ++.=||=|.||-+=--+|..+..
T Consensus 151 i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~--~~~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~ 227 (356)
T COG0079 151 LCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPE--SSLELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIAN 227 (356)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCc--hhhhhcc-CCCCEEEEEecHHhhhcchhceeeccCC
Confidence 9999999999999986654432 2889999998 56663 2333333 344 67779999988421238888888
Q ss_pred CCCcccccC
Q 002866 380 KSVMGSLQN 388 (872)
Q Consensus 380 k~~i~~L~P 388 (872)
+++++.|+.
T Consensus 228 ~~~i~~l~~ 236 (356)
T COG0079 228 PELIAALNK 236 (356)
T ss_pred HHHHHHHHH
Confidence 888777754
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=88.74 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CC-------CCC-CeEEEecccCchhHHHHHHHHHH----c
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PF-------HTN-KKLLTMFDYESQSVNWMAQSAKE----K 265 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf-------~~G-d~ILT~~DhEHnSVl~~~~~Akr----k 265 (872)
..+.-++++++++. + .++|+.++|+|+..++... .+ .+| ++|++....-|............ .
T Consensus 84 ~~~l~~~l~~~~~~--~--~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 159 (396)
T PRK04073 84 LGPWYEKVAKLTGK--D--MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKR 159 (396)
T ss_pred HHHHHHHHHhcCCC--C--eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence 34556777887764 2 5999999999877654421 11 134 45665533235544332221110 1
Q ss_pred Cc-----EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEe
Q 002866 266 GA-----KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLL 335 (872)
Q Consensus 266 Ga-----eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLV 335 (872)
+. .+..++. + +.+++++++. +++++|.+..++|.+|.++| ++ +.+.|+++|+++++
T Consensus 160 ~~~~~~~~~~~~~~--~----d~~~l~~~i~--------~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 225 (396)
T PRK04073 160 GFGPMLPGIKKIPY--G----DLEALKAAIT--------PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIA 225 (396)
T ss_pred CCCCCCCCceEeCC--C----CHHHHHHhcc--------cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 10 1222222 1 4677777664 25899999999999999998 55 34568999999999
Q ss_pred ecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 336 DAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 336 DAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
|-+|. .|.. +..++.....||++++| |.+|. + --+|++..++++++.+.
T Consensus 226 DEv~~g~g~~g~~~~~~~~~~~pdi~~~s--K~lg~-gg~~ig~~~~~~~i~~~~~ 278 (396)
T PRK04073 226 DEIQTGLGRTGKLFACDWDNVTPDMYILG--KALGG-GVFPISCVAANRDILGVFT 278 (396)
T ss_pred ecchhCCCcCcHHHHhhhcCCCCCEEEec--ccccC-CCCcceEEEEcHHHHhhhc
Confidence 99976 3321 11234455678988875 98875 2 22789988887765543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=90.65 Aligned_cols=164 Identities=11% Similarity=0.108 Sum_probs=105.5
Q ss_pred HHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE-----
Q 002866 200 HDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK----- 268 (872)
Q Consensus 200 eeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae----- 268 (872)
.+.|+.||+++ +++++ .|++|+|+++|+.++... +.+||+|++.. ++.......++..|++
T Consensus 79 ~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~l~~~--~~~gd~V~v~~----P~Y~~~~~~~~~~g~~~~~~~ 150 (409)
T PRK07590 79 DFLREKIAENDYQARGCDISAD--EIFISDGAKCDTGNILDI--FGPDNTIAVTD----PVYPVYVDTNVMAGRTGEANE 150 (409)
T ss_pred HHHHHHHHHHHHHhcCCcCChh--hEEECCCHHHHHHHHHHh--cCCCCEEEEeC----CCCcchHHHHHHcCCcccccc
Confidence 46888888875 67776 599999999999987643 46899987652 2222333455667776
Q ss_pred ------EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc
Q 002866 269 ------VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG 338 (872)
Q Consensus 269 ------V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA 338 (872)
+..+|++..++ +..+ +. ..+++++.++.-+|.||+.++.+. ++.|++++++++.|-+
T Consensus 151 ~~~~~~~~~v~~~~~~~-~~~d-----~~-------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~ 217 (409)
T PRK07590 151 DGRYSGIVYLPCTAENN-FVPE-----LP-------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAA 217 (409)
T ss_pred cccccceeEeecccccC-Cccc-----Cc-------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEcc
Confidence 78888753211 2111 11 125788888888899999999863 4557899999999987
Q ss_pred cc--CCCCCccCCCCCCC----CcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 339 SL--GPKDMDSLGLSLFR----PDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 339 Q~--aG~~mipLDLs~l~----~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
-. ......+..+..+. .-+++.|+=|.||.+=.-+|.++..++.+.
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 218 YEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKG 269 (409)
T ss_pred chhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhh
Confidence 32 21100111222221 126678999999841123788887665543
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=88.62 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
++....+++++.|.|. .+++ +|.-|.||.+||-....++ ..+||+|++.--+ ..+..+.. +-.|.+.+.++.
T Consensus 73 ~L~~aL~k~~se~~~~~~~~~~-eVlVT~GA~~ai~~~~~~l-~~~GDeVii~eP~-fd~Y~~~~---~maG~tpv~v~~ 146 (420)
T KOG0257|consen 73 QLRKALAKAYSEFYGGLLDPDD-EVLVTAGANEAISSALLGL-LNPGDEVIVFEPF-FDCYIPQV---VMAGGTPVFVPL 146 (420)
T ss_pred HHHHHHHHHHHHHhccccCCcc-cEEEecCchHHHHHHHHHH-cCCCCEEEEecCc-chhhhhHH---hhcCCcceeecc
Confidence 5677788888887774 3332 5999999999998666665 4789998764211 12222322 225788888887
Q ss_pred c-------CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc-cc--
Q 002866 275 K-------WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG-SL-- 340 (872)
Q Consensus 275 d-------~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA-Q~-- 340 (872)
. .++..+|.++|+.++.. +|+++.+..-+|.||.+++=+ ++..|++||.+|+.|-+ +.
T Consensus 147 ~~~~g~~~s~~~~~D~~~le~~~t~--------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v 218 (420)
T KOG0257|consen 147 KPKEGNVSSSDWTLDPEELESKITE--------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLV 218 (420)
T ss_pred ccccccccCccccCChHHHHhhccC--------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHh
Confidence 6 44567899999988864 699999999999999999964 34578999999999987 32
Q ss_pred -CCCCCccCC--CCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccccC
Q 002866 341 -GPKDMDSLG--LSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 341 -aG~~mipLD--Ls~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~P 388 (872)
-|..|+.+- -..+..-.-+.|+-|.|| -+| +|-++..+.++..+.+
T Consensus 219 ~d~~~h~r~aslPgm~ertitvgS~gKtf~--~TGWrlGW~igp~~L~~~~~~ 269 (420)
T KOG0257|consen 219 YDGNKHIRIASLPGMYERTITVGSFGKTFG--VTGWRLGWAIGPKHLYSALFP 269 (420)
T ss_pred hCCCcceeeecCCchhheEEEeccccceee--eeeeeeeeeechHHhhhhHHH
Confidence 222111110 011234456899999999 477 7888886655555543
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-07 Score=100.01 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccc--Cc-hhHHHHHHHHHHcCcEEEEEec
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDY--ES-QSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~Dh--EH-nSVl~~~~~AkrkGaeV~~Vpv 274 (872)
....+.+.++.+.||.. .+.+.|...|+-++...+. +|.+++++.-+ |- .+. .+-+..+..|++++.|-.
T Consensus 48 R~~~v~~ll~~ltgAea----A~VvNnnaAAv~L~l~~la--~~~EvIvsRGelVeiGgsF-Rip~vm~~sGa~lvEVGt 120 (367)
T PF03841_consen 48 RYAHVEELLCELTGAEA----ALVVNNNAAAVLLALNTLA--KGKEVIVSRGELVEIGGSF-RIPDVMRQSGARLVEVGT 120 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc----ccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccccc
Confidence 34567778899999853 4556777788888887764 56676544321 10 111 122444557888775532
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCc--ccch--hcHH-HHHHHHHCCcEEEeeccc---------c
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRV--TGAK--YSYQ-WMALAQQNHWHVLLDAGS---------L 340 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNv--TG~i--~PLe-~I~~Are~G~~VLVDAAQ---------~ 340 (872)
+.+.+..+++++|.. +|.++-.-|-||. .|.. .|++ ++..||++++.+++|+++ .
T Consensus 121 ---tN~t~~~Dye~AI~e--------~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~g 189 (367)
T PF03841_consen 121 ---TNRTHLSDYEKAITE--------NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYG 189 (367)
T ss_dssp ---------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-
T ss_pred ---ccccccccccccccc--------cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCccccc
Confidence 235667888888864 5888888888886 3433 3454 678899999999999998 1
Q ss_pred CCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 341 GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 341 aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.+....--+.-+.++|.++||+-|.+|+ |. .|+++-|+++++.++.
T Consensus 190 l~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQ-aGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 190 LPDEPTVQEYLAAGADLVTFSGDKLLGG-PQ-AGIIVGKKELIEKLKK 235 (367)
T ss_dssp ---------CCCCT-SEEEEETTSSSSS--S--EEEEEEHHHHHHHHH
T ss_pred CccccHHHHHhhcCCCEEEEECCCcCCC-CC-eEEEEeCHHHHHHHhh
Confidence 2221001122346899999999999999 88 6999999999988753
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=85.42 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=117.6
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|+|..+ .+.-.+.+++++.+. +. .+. ..++........+.-++++++.+. + .|+|
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~-------~~-~~~---~~~~~~~~~~~~~la~~l~~~~~~--~--~v~~ 93 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQ-------AE-KLW---HVSNLYRIPEQERLAERLVENSFA--D--KVFF 93 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHH-------HH-hcC---ccccccCChHHHHHHHHHHhhCCC--C--EEEE
Confidence 3467899765 244556777765431 11 110 111111112334555677777643 3 5999
Q ss_pred eCCHHHHHHHHHhh---CCCCCCC----eEEEecccCchhHHHHHHHHHHcCcEEEE---EeccCCCC----ccCHHHHH
Q 002866 222 TVSRGSAFKLLAES---YPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAKVYS---AWFKWPTL----KLCSTDLR 287 (872)
Q Consensus 222 TsnATeALnLVaes---lpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGaeV~~---Vpvd~p~g----~Id~edLe 287 (872)
|+|+|+|+..+... +.+.+|+ +|++....-|......... .|..... .|.. ++. ..+.++++
T Consensus 94 ~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~ 169 (389)
T PRK01278 94 TNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA---GGQEKYLEGFGPLV-PGFDQVPFGDIEALK 169 (389)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhc---cCChhhcccCCCCC-CCceEeCCCCHHHHH
Confidence 99999998877543 3334454 6776543335544433221 1111110 0100 000 13678888
Q ss_pred HHHhhhhccCCCCCceEEEEeCccCccc-chhcHH----HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEE
Q 002866 288 KQISSKKRRKKDSAAGLFVFPVQSRVTG-AKYSYQ----WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFII 359 (872)
Q Consensus 288 ~~I~~~~rr~~~~~T~LVa~p~vSNvTG-~i~PLe----~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv 359 (872)
++|.. ++++|.+..++|.+| ..+|-+ +.+.|+++|+++++|-++. .+.. +...+...+.+|.++
T Consensus 170 ~~l~~--------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t 241 (389)
T PRK01278 170 AAITP--------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMA 241 (389)
T ss_pred HhhCC--------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEE
Confidence 77742 588999988889899 444543 3456799999999999976 2221 112222345678654
Q ss_pred EcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 360 TSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+-|.+++ | +|+++.+++.++.+.
T Consensus 242 --~sK~l~~---G~~ig~~~~~~~~~~~~~ 266 (389)
T PRK01278 242 --VAKGIGG---GFPLGACLATEEAAKGMT 266 (389)
T ss_pred --EehhccC---CcceEEEEEcHHHHhccC
Confidence 5688773 5 899988887766554
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=89.79 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=101.8
Q ss_pred HHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCC----CCCCeEEEecccCchhHHHHHHHHHHcC---
Q 002866 200 HDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPF----HTNKKLLTMFDYESQSVNWMAQSAKEKG--- 266 (872)
Q Consensus 200 eeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf----~~Gd~ILT~~DhEHnSVl~~~~~AkrkG--- 266 (872)
.+.|+.||+++ +++++ +|++|+|+++|+.+++..+.- .+|+.|++..+-..... ...+...|
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~--~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y---~~~~~~~~~~~ 151 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQ--NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGY---ADAGLEEDLFV 151 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChh--hEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhh---HHHhhccCcee
Confidence 46788888877 36665 599999999999999988742 35788876211111111 11121112
Q ss_pred -cEEEEEeccCC--CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccc
Q 002866 267 -AKVYSAWFKWP--TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGS 339 (872)
Q Consensus 267 -aeV~~Vpvd~p--~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ 339 (872)
.....++++.. ...++.++|+ +. .+++++.++.-+|.||++++.+ +++.|+++++++++|-+-
T Consensus 152 ~~~~~~~~~~~~~~~~~~d~~~l~--~~--------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y 221 (416)
T PRK09440 152 SYRPNIELLPEGQFKYHVDFEHLH--ID--------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY 221 (416)
T ss_pred ecccccccccccccccCCCHHHcc--cC--------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCc
Confidence 22223333221 1246777765 21 2478999998999999999975 345678999999999995
Q ss_pred cCCCCCcc-CCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 340 LGPKDMDS-LGLSL--FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 340 ~aG~~mip-LDLs~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
........ .++.. .+-=+++.|+-|+ +.+=.-+|.++..+++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~ 270 (416)
T PRK09440 222 GPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEAL 270 (416)
T ss_pred cccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHH
Confidence 42210000 11111 1112677899996 53223378777666554443
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.8e-05 Score=84.26 Aligned_cols=132 Identities=8% Similarity=0.061 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcC-----CCCCC-CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHLN-----IPENE-YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lLg-----A~~dE-Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
....|+.|++++. ..++. -+|++|+|+++|+.+++..+. .+||.|++..-. +..... .++...|++++.+
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~-y~~~~~--~~~~~~g~~vv~v 121 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPDHN-WGNYKL--TFNTRRGAEIVTY 121 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcCCC-CccHHH--HHHHhcCCEEEEe
Confidence 4568888887662 33221 258999999999999999875 689998765211 111211 1123469999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHH-----CCcEEEeecc
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQ-----NHWHVLLDAG 338 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are-----~G~~VLVDAA 338 (872)
|...++..++.+++++.+... ..+.+.++.++.-+|.||+.++.+. +..|++ ++++++.|-+
T Consensus 122 ~~~~~~~~~d~~~l~~~~~~~----~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~ 192 (388)
T PRK08637 122 PIFDEDGGFDTDALKEALQAA----YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDA 192 (388)
T ss_pred cccCCCCcCCHHHHHHHHHhh----ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 983223458999998887621 1124667888888999999999853 344443 8999999987
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-05 Score=84.85 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=110.8
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. ...-+.|+.+-|+.. .++|.+|-+.+...+..-. ..|++|+...+--.....-+.+++.+.|++
T Consensus 73 r~~nPt~----~~le~~iaal~ga~~---~l~fsSGmaA~~~al~~L~--~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie 143 (409)
T KOG0053|consen 73 RSGNPTR----DVLESGIAALEGAAH---ALLFSSGMAAITVALLHLL--PAGDHIVATGDVYGGTLRILRKFLPKFGGE 143 (409)
T ss_pred cCCCCch----HHHHHHHHHHhCCce---EEEecccHHHHHHHHHHhc--CCCCcEEEeCCCcccHHHHHHHHHHHhCce
Confidence 4578864 345567888999853 4666666544444444333 468888866442234455567788889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+..+..+ +.+++++.+. ++|++|-+-..+|.+....||+. .+.||++|+.|+||.+=+.|. -
T Consensus 144 ~~~vd~~------~~~~~~~~i~--------~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~---~ 206 (409)
T KOG0053|consen 144 GDFVDVD------DLKKILKAIK--------ENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY---N 206 (409)
T ss_pred eeeechh------hHHHHHHhhc--------cCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc---c
Confidence 9876543 2355555554 36999999999999999999985 568899999999999965553 3
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
++.=.+++|.++-|.-||||+
T Consensus 207 ~~pL~lGADIV~hSaTKyi~G 227 (409)
T KOG0053|consen 207 QDPLPLGADIVVHSATKYIGG 227 (409)
T ss_pred cChhhcCCCEEEEeeeeeecC
Confidence 444456899999999999997
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=88.66 Aligned_cols=167 Identities=12% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEE--eCCHHHHHHHHHh---hCCCCCCCeEEEecccCchhHHHHHHHHHHcCc
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVF--TVSRGSAFKLLAE---SYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVF--TsnATeALnLVae---slpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
..+.|+.||+++. ++++ +|++ |.|+++|+.++.. .+ .++||.|++.. ++.......++..|+
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~-~~~Gd~Vlv~~----P~y~~~~~~~~~~G~ 146 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRF-LPAGTTVYVSN----PTWPNHVNIFKSAGL 146 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHh-cCCCCEEEEcC----CCchhHHHHHHHcCC
Confidence 3478889988762 3444 4775 8999999988765 34 47899987652 233344556778899
Q ss_pred EEEEEeccC-CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc--c
Q 002866 268 KVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS--L 340 (872)
Q Consensus 268 eV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ--~ 340 (872)
+++.+|... ++..++.+.+++.+... .++++++.++.-+|.||..++.+. +..|++++++++.|-+= +
T Consensus 147 ~~~~v~l~~~~~~~~d~~~l~~~~~~~-----~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~ 221 (404)
T PTZ00376 147 NVKEYRYYDPKTKGLDFDGMLEDLRTA-----PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGF 221 (404)
T ss_pred ceeeccccCcccCCcCHHHHHHHHHhC-----CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCc
Confidence 999999832 23568899998888531 234788999999999999999863 45678999999999882 2
Q ss_pred CCCC----Ccc-CCCCCCC-CcEEEEcccccCCCCCCceEEEE
Q 002866 341 GPKD----MDS-LGLSLFR-PDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 341 aG~~----mip-LDLs~l~-~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
.... ..+ ..+.... -=+++.|+=|.||.+=--+|.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~ 264 (404)
T PTZ00376 222 ASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALH 264 (404)
T ss_pred cCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEE
Confidence 1100 000 0011111 12778888998883112256553
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-06 Score=93.58 Aligned_cols=197 Identities=12% Similarity=0.141 Sum_probs=128.5
Q ss_pred cCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH--HHHHHc
Q 002866 188 ALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA--QSAKEK 265 (872)
Q Consensus 188 ~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~--~~Akrk 265 (872)
.-||+-... .+.-+++|+++|=.. =.|.+++|.+..+.+..---++|.+|+.... .| +..|- -.+.-.
T Consensus 50 dVyGeD~tt---~rLE~~vA~l~GKEA----gLFv~SGTmgNllaIm~Hc~~rg~eii~gd~-~H--I~~~E~gg~s~l~ 119 (384)
T KOG1368|consen 50 DVYGEDPTT---NRLEQRVAELFGKEA----GLFVPSGTMGNLLAIMVHCHQRGSEIIVGDR-AH--IHRYEQGGISQLA 119 (384)
T ss_pred ccccCCccH---HHHHHHHHHHhCccc----eeeecccccccHHHHHHHhcCCCceEEeccc-hh--eeehhccChhhhc
Confidence 356653222 244568999999643 5799999999877766544467888876532 22 11111 112224
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCccc-chhcHHHHH----HHHHCCcEEEeecccc
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTG-AKYSYQWMA----LAQQNHWHVLLDAGSL 340 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG-~i~PLe~I~----~Are~G~~VLVDAAQ~ 340 (872)
|+.++.+.... ++-+++++++..|.........+.|+|+++---.|.+| ..+||+|+. .|+++|+.+++|+|-.
T Consensus 120 gv~~~tv~~e~-dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi 198 (384)
T KOG1368|consen 120 GVHVRTVKNEN-DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI 198 (384)
T ss_pred cceeEeeeeCC-CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh
Confidence 78888777654 68899999999997433234457899999998888877 999999764 4689999999999843
Q ss_pred CCCC-CccCCCCCC--CCcEEEEcccccCCCCCCceEEEEE-eCCCcccccCCCCCCCCCeE
Q 002866 341 GPKD-MDSLGLSLF--RPDFIITSFYRVFGFDPTGFGCLLI-KKSVMGSLQNQSGQTGSGMV 398 (872)
Q Consensus 341 aG~~-mipLDLs~l--~~DFlv~S~HK~fG~~PtGvG~LyV-Rk~~i~~L~P~~~~~GgGtV 398 (872)
.-.. ..-+.++++ ..|-+.+.+-|-+|+ | +|-.+| .++++..-+-..-.-||||-
T Consensus 199 ~NAavasgV~vk~i~~~fDSVsiCLSKglgA-P--VGSViVG~k~FI~kA~~~RKalGGGmR 257 (384)
T KOG1368|consen 199 FNAAVASGVPVKKICSAFDSVSICLSKGLGA-P--VGSVIVGSKDFIDKARHFRKALGGGMR 257 (384)
T ss_pred hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC-C--cccEEEccHHHHHHHHHHHHHhcCchh
Confidence 2110 012333443 478899999999998 7 454444 55666443222223588875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.3e-05 Score=90.73 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=97.0
Q ss_pred CcEEEeCCHHHHHHHHHhhC----CCCCCCeEEEecccCchhHHHHHHHHHHc--CcEEEEEeccCC-CCccCHHHHHHH
Q 002866 217 YGLVFTVSRGSAFKLLAESY----PFHTNKKLLTMFDYESQSVNWMAQSAKEK--GAKVYSAWFKWP-TLKLCSTDLRKQ 289 (872)
Q Consensus 217 Y~VVFTsnATeALnLVaesl----pf~~Gd~ILT~~DhEHnSVl~~~~~Akrk--GaeV~~Vpvd~p-~g~Id~edLe~~ 289 (872)
.+|+.|.|+++|+..+..++ -..+||+|++..- ........++-. |++++.++.+.. +..++.++|+++
T Consensus 162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P----~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~ 237 (527)
T PRK09275 162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTP----IFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKL 237 (527)
T ss_pred CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCC----ChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhh
Confidence 36999999999999888763 2578999887632 222223333333 455555554322 246788888776
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHH--HCCcEEEeecc--ccCCCCCccCCCCCC-CCcEEEE
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQ--QNHWHVLLDAG--SLGPKDMDSLGLSLF-RPDFIIT 360 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Ar--e~G~~VLVDAA--Q~aG~~mipLDLs~l-~~DFlv~ 360 (872)
+. +++++|.+..-+|.||++++.+. +..|+ +++++|+.|-+ .+.+. ..++ ++.. .--+++.
T Consensus 238 ~~--------~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-~~s~-~~~~~~~~I~v~ 307 (527)
T PRK09275 238 RD--------PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-FRSL-FAVLPYNTILVY 307 (527)
T ss_pred cC--------CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-ccCH-HHhCCCCEEEEe
Confidence 53 36888888888999999999753 34564 35999999988 23321 0111 1111 1247788
Q ss_pred cccccCCCCCCc--eEEEEEeCC
Q 002866 361 SFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 361 S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
|+-|.||. +| +|.++..++
T Consensus 308 SfSK~f~m--tG~RlG~i~~~~~ 328 (527)
T PRK09275 308 SFSKYFGA--TGWRLGVIALHED 328 (527)
T ss_pred ehhhhccC--cHhHHhhhhcCch
Confidence 99999984 46 588876664
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.8e-05 Score=91.94 Aligned_cols=177 Identities=13% Similarity=0.092 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+|.+.+|+++||+.. -..|.|+|.+++.++.+. ..+||.||+.- ..|-||..- .+.-.|++.++++-..
T Consensus 174 G~i~eAq~~AA~~fgAd~t---yFlvNGTS~gn~a~i~a~-~~~Gd~VLvdR-N~HKSv~hg--aLiLsGa~PVYl~P~~ 246 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKT---YFVLNGTSASNKVVTNAL-LTPGDLVLFDR-NNHKSNHHG--ALIQAGATPVYLETAR 246 (720)
T ss_pred hHHHHHHHHHHHHhCCCce---EEEeCChhHHHHHHHHHh-cCCCCEEEeec-ccHHHHHHH--HHHHcCCeEEEeeccc
Confidence 5678999999999999753 566789999999888876 47899988764 468888641 1123689999886544
Q ss_pred CC----CccCHHH-----HHHHHhhh-hccCCC-CCceEEEEeCccCcccchhcHHHH-HH-HHHCCcEEEeeccccCCC
Q 002866 277 PT----LKLCSTD-----LRKQISSK-KRRKKD-SAAGLFVFPVQSRVTGAKYSYQWM-AL-AQQNHWHVLLDAGSLGPK 343 (872)
Q Consensus 277 p~----g~Id~ed-----Le~~I~~~-~rr~~~-~~T~LVa~p~vSNvTG~i~PLe~I-~~-Are~G~~VLVDAAQ~aG~ 343 (872)
+. +.|+.++ |+++|... ..+... ...++++++.- +--|+.++++.| .. +|.++ .+|+|-|+.+-.
T Consensus 247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 22 3356544 88888654 111111 12477777653 457999999855 55 47788 999999975432
Q ss_pred CCccC--CCC----CCCCc----EEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 344 DMDSL--GLS----LFRPD----FIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 344 ~mipL--DLs----~l~~D----Flv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
.-.++ ++. ..++| |++-|.||.+++ -+....|.+|.+.+
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i 373 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHI 373 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCccc
Confidence 10121 121 35899 999999999887 78888888876643
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-05 Score=85.44 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeC-CHHHHHHHHHhhCCCCCCC-eEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTV-SRGSAFKLLAESYPFHTNK-KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTs-nATeALnLVaeslpf~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
.++.++++.+.++|+++ ++|.|.|.+ |+|..+.++.-++--..+- -+.+- -.+.-+..+ |++.+..+..+..
T Consensus 50 ~v~~~a~~~lreLl~iP-d~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g-~Ws~~a~~e----A~~~~~~~~~~~~ 123 (365)
T COG1932 50 NVLEEAEKDLRELLNIP-DDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTG-AWSEFAIKE----AKKVGKQPKLIDA 123 (365)
T ss_pred HHHHHHHHHHHHHhCCC-CCceEEEEcCccHHHHHHHHHhhhcccCceeEeee-ehhHhHHHH----HHHhccccccccc
Confidence 68899999999999997 469999994 5677788877766422222 23332 223333333 3433321211111
Q ss_pred ---cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HHHHHHHHCCcEEEeeccccCCCCCccCCC
Q 002866 275 ---KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QWMALAQQNHWHVLLDAGSLGPKDMDSLGL 350 (872)
Q Consensus 275 ---d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~I~~Are~G~~VLVDAAQ~aG~~mipLDL 350 (872)
..+-+.|. ++.+.- ...+...|++++-...+|+.+|- ..+. .+..+++|+++.+.- .++|+
T Consensus 124 ~~~~~~~~~iP--~~~~~~-------~~~~~ayv~~~~NeTi~Gv~v~~~p~~~----~~~~~v~D~SS~ils--r~iDv 188 (365)
T COG1932 124 RIEEAGYGSIP--DLSKWD-------FSDNDAYVHFCWNETISGVEVPELPDIG----SDGLLVADASSAILS--RPIDV 188 (365)
T ss_pred ceeccCccCCC--Chhhcc-------cCCCccEEEEecCCcccceEccCCCCCC----CCceEEEecccHHhc--CCCCh
Confidence 11112221 111100 11125678888877788999883 1221 127899999987765 48999
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++ |.+.++..|.+| |.|+++++||+++++++++
T Consensus 189 sk~--dviyagaQKnlG--paGltvvIvr~~~l~r~~~ 222 (365)
T COG1932 189 SKY--DVIYAGAQKNLG--PAGLTVVIVRPDLLERAES 222 (365)
T ss_pred hHc--ceEEEehhhccC--ccceEEEEEcHHHHhcccc
Confidence 865 999999999999 8999999999999887764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.9e-05 Score=83.90 Aligned_cols=129 Identities=14% Similarity=0.027 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCCCCC----CCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 197 TVEHDIKTRIMDHLNIPEN----EYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~d----EY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.-+..||++||++++-+.+ ..+|+.|+|+++|+.+++.++. ++|.+||.+- +...+.-..|.-.|++|+..
T Consensus 103 ~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNILlPr----PGfp~Y~~~a~~~~lEVR~y 177 (447)
T KOG0259|consen 103 VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANILLPR----PGFPLYDTRAIYSGLEVRYY 177 (447)
T ss_pred cccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCceecCC----CCCchHHHhhhhcCceeEee
Confidence 3456899999999874321 1259999999999999999987 7888988752 33333344567789999987
Q ss_pred ec-cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc
Q 002866 273 WF-KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 273 pv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA 338 (872)
.+ ...+-+||++.++.++.. +|.-+.+---+|.+|.+|..+ ++..|++.|+.|+-|=+
T Consensus 178 dlLPe~~weIDL~~veal~DE--------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEV 240 (447)
T KOG0259|consen 178 DLLPEKDWEIDLDGVEALADE--------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEV 240 (447)
T ss_pred cccCcccceechHHHHHhhcc--------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhh
Confidence 65 222457899999988864 577777778899999999985 34567999999998865
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.6e-05 Score=82.26 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
.+.|+.||+++|+++.+ +|++|+|+++++.++... +.+|+ +++. .++.......++..|+++..++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~~-~I~i~~Gs~e~i~~l~~~--~~~g~-v~v~----~P~y~~y~~~~~~~g~~~~~v~~~~--- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAA-HVLPVAGSQAAIRALPAL--LPRGR-VGIA----PLAYSEYAPAFARHGHRVVPLDEAA--- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcc-cEEECcCHHHHHHHHHHh--cCCCe-EEEc----CCCcHHHHHHHHHCCCEEEeecccc---
Confidence 58999999999997422 599999999999988654 45665 5543 1334444556677899988776542
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH----HHHHCCcEEEeeccc--cCCCCCccC-CCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA----LAQQNHWHVLLDAGS--LGPKDMDSL-GLSL 352 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~----~Are~G~~VLVDAAQ--~aG~~mipL-DLs~ 352 (872)
+ .+.. .++++.++.-+|.||+.++.+.+. .+.+++.++++|-+- +... .++ .+..
T Consensus 125 ----~----~~~~--------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~--~s~~~~~~ 186 (339)
T PRK06959 125 ----D----TLPA--------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA--ASLAAHTD 186 (339)
T ss_pred ----h----hccc--------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--ccchhccC
Confidence 1 1211 245666666789999999987443 345678888999872 2221 011 1111
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+-=+++.|+=|.||-+=--+|.++..++.++.+.
T Consensus 187 ~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~ 221 (339)
T PRK06959 187 RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALR 221 (339)
T ss_pred CCCEEEEecChhhcCCcchheEEEecCHHHHHHHH
Confidence 11127888999999841123799988777766554
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=80.96 Aligned_cols=172 Identities=10% Similarity=0.074 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHH----c--CcEEEEE
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKE----K--GAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~Akr----k--GaeV~~V 272 (872)
...++.+|+.|...++. -++|++++|+|+....... .+..+++|++.....|.+.......... . +..+..+
T Consensus 69 ~~~~~~la~~l~~~~~~-~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (375)
T PRK04260 69 NSLQEEVAQKLIGDKDY-LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHF 147 (375)
T ss_pred CHHHHHHHHHHhcCcCC-EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCe
Confidence 45777888866544332 3689999999988554432 2234556776544446655443221110 1 1111101
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD-- 344 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~-- 344 (872)
+... ..+.+++++++. .++.+|.+..+.+.+|.+.| ++ ....|+++|+++++|.++. .|..
T Consensus 148 ~~~~---~~dl~~l~~~l~--------~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~ 216 (375)
T PRK04260 148 SYAI---FNDLNSVKALVN--------KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK 216 (375)
T ss_pred EEeC---CCCHHHHHHhcC--------CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 1000 125677776653 24789999999999999887 55 4567899999999999974 2211
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+.......+.||.+ ++-|.++. -.-+|+++.+++..+.+
T Consensus 217 ~~~~~~~~~~pdi~--t~sK~l~~-G~~ig~~~~~~~~~~~~ 255 (375)
T PRK04260 217 LYAFEHYGIEPDIF--TLAKGLAN-GVPVGAMLAKSSLGGAF 255 (375)
T ss_pred hhhhHhhCCCCCEE--EecccccC-CcceEEEEEcHHHHhhc
Confidence 01112234578954 68898872 01289999888765544
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00041 Score=77.89 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=134.7
Q ss_pred CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch-HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCC
Q 002866 161 FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK-GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFH 239 (872)
Q Consensus 161 ~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS-~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~ 239 (872)
.|+.+++|+.+ .. .|..||-|.. .+.++.+..-..+--+-......|+|+++.--++.++++.+. +
T Consensus 39 ~pp~i~~Al~~--------rv----dhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~ 105 (388)
T COG1168 39 TPPEIIEALRE--------RV----DHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-K 105 (388)
T ss_pred CCHHHHHHHHH--------HH----hcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-c
Confidence 45677777432 11 1456776643 346666776666655544333369999999999999999986 7
Q ss_pred CCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCcc--CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch
Q 002866 240 TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKL--CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK 317 (872)
Q Consensus 240 ~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~I--d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i 317 (872)
+||.|++.. +...+....-+..|-++...|+...+++. |.++|++.+.. ++++|+.++.-+|.||.+
T Consensus 106 ~gd~Vvi~t----PvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-------~~vkl~iLCnPHNP~Grv 174 (388)
T COG1168 106 PGDGVVIQT----PVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD-------ERVKLFILCNPHNPTGRV 174 (388)
T ss_pred CCCeeEecC----CCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc-------CCccEEEEeCCCCCCCcc
Confidence 899987653 23345556667788899999987666665 99999998864 357999999999999999
Q ss_pred hcHHHH----HHHHHCCcEEEeecccc----CCCCCccCC-CCCCCCc--EEEEcccccCCCCCCceEEEEEeCC
Q 002866 318 YSYQWM----ALAQQNHWHVLLDAGSL----GPKDMDSLG-LSLFRPD--FIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 318 ~PLe~I----~~Are~G~~VLVDAAQ~----aG~~mipLD-Ls~l~~D--Flv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
..-+++ .+|++||+.|+.|=.++ .|+.++++. |+.-..| +.+.|.-|.|.-+-..++.+++.++
T Consensus 175 wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~ 249 (388)
T COG1168 175 WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR 249 (388)
T ss_pred ccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH
Confidence 997643 46799999999998863 443234443 4333233 5666778987731122344555444
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00039 Score=79.24 Aligned_cols=154 Identities=14% Similarity=0.060 Sum_probs=111.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-cCchhHHHHHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFD-YESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~D-hEHnSVl~~~~~AkrkGa 267 (872)
.++||.. ...-++++.+=|+.. .+-++++-.|+..+.-.+ +++||+||...+ |. ....-.....++.|+
T Consensus 59 R~~nPT~----~~lE~~~a~LEg~~~----~~afsSGmaAI~~~~l~l-l~~GD~vl~~~~~YG-~t~~~~~~~l~~~gi 128 (396)
T COG0626 59 RTGNPTR----DALEEALAELEGGED----AFAFSSGMAAISTALLAL-LKAGDHVLLPDDLYG-GTYRLFEKILQKFGV 128 (396)
T ss_pred cCCCccH----HHHHHHHHHhhCCCc----EEEecCcHHHHHHHHHHh-cCCCCEEEecCCccc-hHHHHHHHHHHhcCe
Confidence 4578864 234456777777632 455677778888877666 477999987765 43 333334456778899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++.++... +.+++.+++.+ ++|++|-+-.-+|.+-.++||.. .+.||++|+.++||-+=+.|.-.-
T Consensus 129 ~~~~~d~~------~~~~~~~~~~~-------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~ 195 (396)
T COG0626 129 EVTFVDPG------DDEALEAAIKE-------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQR 195 (396)
T ss_pred EEEEECCC------ChHHHHHHhcc-------cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccC
Confidence 99987532 23455555541 36999999999999999999985 567899999999999976664223
Q ss_pred cCCCCCCCCcEEEEcccccCCC
Q 002866 347 SLGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~ 368 (872)
|++ +++|.++=|+-|.+|+
T Consensus 196 PL~---~GaDIVvhSaTKyl~G 214 (396)
T COG0626 196 PLE---LGADIVVHSATKYLGG 214 (396)
T ss_pred hhh---cCCCEEEEeccccccC
Confidence 443 5899999999999886
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00025 Score=78.65 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CC-----CCCeEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FH-----TNKKLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~-----~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
....+..++++++.+. + .|+||+|+++|+.++..... +. ..++|++....-|......... .|....
T Consensus 81 ~~~~~la~~l~~~~~~--~--~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~ 153 (396)
T PRK02627 81 EPQEELAEKLVELSGM--D--KVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSA---TGQPKY 153 (396)
T ss_pred HHHHHHHHHHHhhcCC--C--EEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHh---cCCccc
Confidence 3445666777877665 3 59999999999998877431 11 1145665432223322221111 111111
Q ss_pred ---EEeccCCCC----ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccc-hhcH---H-HHHHHHHCCcEEEeecc
Q 002866 271 ---SAWFKWPTL----KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGA-KYSY---Q-WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 271 ---~Vpvd~p~g----~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~-i~PL---e-~I~~Are~G~~VLVDAA 338 (872)
..++.. +. ..+.+++++++. +++++|.+..+.|.+|. .+|. + +.+.|+++|+++++|-+
T Consensus 154 ~~~~~~~~~-~~~~~~~~d~~~l~~~i~--------~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~ 224 (396)
T PRK02627 154 QEGFEPLVE-GFIYVPFNDIEALKAAIT--------DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEV 224 (396)
T ss_pred cccCCCCCC-CceEeCCCCHHHHHHhcC--------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence 111110 00 016777877773 25888888888889984 5554 3 34567999999999999
Q ss_pred cc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 339 SL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 339 Q~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+. .+.. +..++.....+|.+++| |.+|+ .--+|+++.+++.++.+.
T Consensus 225 ~~g~g~~g~~~~~~~~~~~pdi~t~s--K~~~~-G~rig~~~~~~~~~~~~~ 273 (396)
T PRK02627 225 QTGMGRTGKLFAYQHYGIEPDIMTLA--KGLGG-GVPIGAVLAKEKVADVFT 273 (396)
T ss_pred hcCCCccCceeeehhcCCCCCEEEEc--chhhC-CcccEEEEEcHHHHhccC
Confidence 75 3321 11233334568877655 98874 234899988877665543
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=80.51 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.=++||+|+|... .|+|++|-+.-+-+ +.++. +++|-|+.. +..|.|+. .-++-.+++++..+ .
T Consensus 84 ~~h~~LE~~lA~f~g~e~---al~f~SGy~AN~~~-i~~l~-~~~dli~~D-~lnHASii---dG~rls~a~~~~f~--H 152 (388)
T COG0156 84 DLHVELEEELADFLGAEA---ALLFSSGFVANLGL-LSALL-KKGDLIFSD-ELNHASII---DGIRLSRAEVRRFK--H 152 (388)
T ss_pred HHHHHHHHHHHHHhCCCc---EEEEcccchhHHHH-HHHhc-CCCcEEEEe-chhhhhHH---HHHHhCCCcEEEec--C
Confidence 456677889999999964 59999987665444 33443 456656654 56677754 33444567776543 2
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc--------c
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD--------S 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi--------p 347 (872)
.|.++|+++|.+.+. ... +.++|++..+-++.|.+-||. ++.++++++++++||=|+++|. +. .
T Consensus 153 ----nD~~~Le~~l~~~~~-~~~-~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv-~G~~GrG~~e~ 225 (388)
T COG0156 153 ----NDLDHLEALLEEARE-NGA-RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGV-LGPNGRGLAEH 225 (388)
T ss_pred ----CCHHHHHHHHHhhhc-cCC-CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccc-cCCCCccHHHH
Confidence 467999999976321 111 578999999999999999997 5678899999999999998774 11 2
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
+.+....+|+++.++-|-||. .|+.+.-
T Consensus 226 ~g~~~~~vdi~~gTlsKAlGs----~Gg~v~g 253 (388)
T COG0156 226 FGLEPEEVDIIVGTLGKALGS----SGGYIAG 253 (388)
T ss_pred hCCCCccceEEEEEchhhhcc----cCceeeC
Confidence 334445569999999999983 5655543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00038 Score=87.54 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=111.4
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCC-CCcEEEeCCHHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPEN-EYGLVFTVSRGS 227 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~d-EY~VVFTsnATe 227 (872)
.+.||.+-... +|+.+++++.+ .+... + ..++.| +....+++.+++..|.+.+ +..|++|+|+++
T Consensus 699 vI~LsinE~d~ppPp~V~eAi~e-------al~~~--~-~s~g~p---dlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~e 765 (1082)
T PLN02672 699 LIHMDVDESFLPVPSAVKASIFE-------SFVRQ--N-ISESET---DPRPSILQFIKSNYGFPTDSCTEFVYGDTSLA 765 (1082)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHH-------HHhhc--C-CCCCCh---HHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHH
Confidence 68888776553 55666666432 11110 0 112222 3457788888888888654 126999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
++.++...+- ++||.|++.. ++.......++..|++++.+|.+. .+..++.++|++++... +++++.
T Consensus 766 lL~lll~aLl-~pGD~VLVp~----PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~-------~~~~I~ 833 (1082)
T PLN02672 766 LFNKLVLCCV-QEGGTLCFPA----GSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV-------KKPWVY 833 (1082)
T ss_pred HHHHHHHHHc-CCCCEEEEeC----CChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-------CCCEEE
Confidence 9999988874 6899988652 233344455677899999999863 24567888998888531 122344
Q ss_pred EeCc-cCcccchhcHHH----HHHHHHCCcEEEeeccc
Q 002866 307 FPVQ-SRVTGAKYSYQW----MALAQQNHWHVLLDAGS 339 (872)
Q Consensus 307 ~p~v-SNvTG~i~PLe~----I~~Are~G~~VLVDAAQ 339 (872)
+..- +|.||.+++.+. +..|++++++|++|-+-
T Consensus 834 L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaY 871 (1082)
T PLN02672 834 ISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSF 871 (1082)
T ss_pred EECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 4333 399999999864 35568999999999984
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00025 Score=82.51 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC------------CC-CCCCeEEEecccCchhHHHHHHHHH
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY------------PF-HTNKKLLTMFDYESQSVNWMAQSAK 263 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl------------pf-~~Gd~ILT~~DhEHnSVl~~~~~Ak 263 (872)
...++.=++||+|+|.+. .|+|.+|-.. ...++..+ |. .+++.|++. ...|.|+..-.+.++
T Consensus 147 ~~h~~LE~~LA~f~g~e~---all~sSGy~A-N~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D-~~~HaSI~dG~~ls~ 221 (476)
T PLN02955 147 TYHRLLESSLADLKKKED---CLVCPTGFAA-NMAAMVAIGSVASLLAASGKPLKNEKVAIFSD-ALNHASIIDGVRLAE 221 (476)
T ss_pred HHHHHHHHHHHHHHCCCc---EEEECChHHH-HHHHHHHHhhccccccccccccCCCCcEEEEe-ccchHHHHHHHHhcc
Confidence 455678889999999853 3666655544 33333222 11 123334443 356888865455555
Q ss_pred Hc-CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccC
Q 002866 264 EK-GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 264 rk-GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~a 341 (872)
++ |+++...+ . .|.++|+++|.... .+..+|++..+-++.|.+.|+++ +..++++|+.++||=|+..
T Consensus 222 ~~~~a~~~~f~--H----ND~~~Le~~L~~~~-----~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~ 290 (476)
T PLN02955 222 RQGNVEVFVYR--H----CDMYHLNSLLSSCK-----MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGT 290 (476)
T ss_pred ccCCceEEEeC--C----CCHHHHHHHHHhCC-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccC
Confidence 44 47776544 2 26899999886531 24579999999999999999975 5677899999999999875
Q ss_pred CCCCc--------cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 342 PKDMD--------SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 342 G~~mi--------pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|. .- .+++. -.+|+++.++=|.||. . -|++..+++.++.|+
T Consensus 291 Gv-~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~-~--GGfi~gs~~~~~~l~ 339 (476)
T PLN02955 291 FV-CGENGGGVAEEFNCE-ADVDLCVGTLSKAAGC-H--GGFIACSKKWKQLIQ 339 (476)
T ss_pred ce-ecCCCCcHHHHhCCC-CCCcEEEEeCccchhc-c--CceeecHHHHHHHHH
Confidence 52 01 13332 3689999999999984 2 345566666666665
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=73.84 Aligned_cols=173 Identities=8% Similarity=0.066 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CC-------CCCC-eEEEecccCchhHHHHHHHHH----
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PF-------HTNK-KLLTMFDYESQSVNWMAQSAK---- 263 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf-------~~Gd-~ILT~~DhEHnSVl~~~~~Ak---- 263 (872)
....++-++++++++. + .+.|+.++++|+..+.... .+ .+|+ .|++...-.|.+...-.....
T Consensus 79 ~~~~~l~~~l~~~~~~--~--~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~ 154 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGY--D--KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDS 154 (401)
T ss_pred HHHHHHHHHHHhhcCC--C--EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccc
Confidence 4456777889999874 2 4999999999877665542 11 1334 455543322544332111111
Q ss_pred --HcC---cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEE
Q 002866 264 --EKG---AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHV 333 (872)
Q Consensus 264 --rkG---aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~V 333 (872)
..| ..+..+ .++ +.++|+++|... ..++..|.+-.+.+.+|.+.| ++. .+.|+++|+++
T Consensus 155 ~~~~~~~~~~~~~~--~~~----d~~~le~~l~~~-----~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~ll 223 (401)
T TIGR01885 155 RTNFGPYVPGFKKI--PYN----NLEALEEALEDH-----GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLL 223 (401)
T ss_pred ccccCCCCCCceEe--CCC----CHHHHHHHHHhc-----CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 012 112222 222 578888888532 235778888888899999998 764 56789999999
Q ss_pred Eeecccc-CCC--CCccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 334 LLDAGSL-GPK--DMDSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 334 LVDAAQ~-aG~--~mipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
++|-++. .|. .+..++.....+|.+++| |-+++ . .-+|++..++++++.+.
T Consensus 224 i~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~-g~~~ig~v~~~~~i~~~~~ 278 (401)
T TIGR01885 224 IADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSG-GVYPVSAVLADDDVMLTIK 278 (401)
T ss_pred EEechhhCCCccchhhHHhhcCCCCCEEEee--ccccC-CCCCcEEEEEcHHHHhhcc
Confidence 9999964 221 011233334678988876 97763 1 12677777776665443
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=80.26 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=127.3
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch-HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK-GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE 234 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS-~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae 234 (872)
|+=...++.|++++-. .|. ..+..-....-+||.-.. ..+..-+.++..++||++-.+ |=--+++.|...|..
T Consensus 33 ASEN~~S~aV~~A~gS--~lt-nKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~an---VQPhSGs~AN~av~~ 106 (413)
T COG0112 33 ASENFTSPAVMEAQGS--DLT-NKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYAN---VQPHSGSQANQAVYL 106 (413)
T ss_pred eccccCCHHHHHHHhh--hhh-hccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccc---cCCCCchHHHHHHHH
Confidence 3444578888887421 111 001111111123333322 345566999999999996432 334566778777777
Q ss_pred hCCCCCCCeEEEec-cc-CchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccC
Q 002866 235 SYPFHTNKKLLTMF-DY-ESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSR 312 (872)
Q Consensus 235 slpf~~Gd~ILT~~-Dh-EHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSN 312 (872)
++ .++||.|+... .| -|-+--.-..+.-.. .++..-+++..++.||.+++++++... +.+|+++-. |
T Consensus 107 Al-l~pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~-------kPK~ii~G~-S- 175 (413)
T COG0112 107 AL-LQPGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEV-------KPKLIIAGG-S- 175 (413)
T ss_pred HH-cCCCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCccCHHHHHHHHHHh-------CCCEEEECc-c-
Confidence 76 47899987442 11 111100001111111 556666788778999999999988764 356666532 2
Q ss_pred cccchhcHHHHH-HHHHCCcEEEeeccccCCC---CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC-CCccccc
Q 002866 313 VTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 313 vTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~ 387 (872)
.--..+|++.++ +|.+.|+++++|+|+.+|. ...|=.|. .+|+++.+.||.|.+ |.| |+++.++ ++...+.
T Consensus 176 aY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrG-PrG-G~Il~~~eel~kkin 251 (413)
T COG0112 176 AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRG-PRG-GIILTNDEELAKKIN 251 (413)
T ss_pred ccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCC-CCc-eEEEeccHHHHHHhh
Confidence 223466776665 5689999999999986542 00232333 299999999999888 886 4444554 6667776
Q ss_pred CCC
Q 002866 388 NQS 390 (872)
Q Consensus 388 P~~ 390 (872)
...
T Consensus 252 ~aV 254 (413)
T COG0112 252 SAV 254 (413)
T ss_pred hhc
Confidence 543
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00074 Score=78.34 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh---hCCC-C----CCCe-EEEecccCchhHHHHHHHH----HH
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE---SYPF-H----TNKK-LLTMFDYESQSVNWMAQSA----KE 264 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae---slpf-~----~Gd~-ILT~~DhEHnSVl~~~~~A----kr 264 (872)
...+.-++++++++. + .+.|+.++++|+..... .+.. . +++. |+.....-|.......... .+
T Consensus 118 ~~~~la~~L~~~~~~--~--~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~ 193 (474)
T PLN02624 118 KFPEFAEYLTSMFGY--D--MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEAT 193 (474)
T ss_pred HHHHHHHHHHhhcCC--C--eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcccc
Confidence 334566778888764 2 59999999997665443 2210 1 1333 4444321233322211110 01
Q ss_pred cC-----cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEE
Q 002866 265 KG-----AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVL 334 (872)
Q Consensus 265 kG-----aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VL 334 (872)
.+ ..+..+|.. +.+.|++++... ..++..|.+..+.|.+|.++| ++. .+.|+++|++++
T Consensus 194 ~~~~~~~~~~~~~~~~------d~~~l~~~l~~~-----~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI 262 (474)
T PLN02624 194 RGFGPLLPGHLKVDFG------DLDALEKIFEED-----GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMI 262 (474)
T ss_pred ccCCCCCCCceEeCCC------CHHHHHHHHHhC-----CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 11 112233321 467888877531 246889999999999999999 764 467899999999
Q ss_pred eecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 335 LDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 335 VDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+|-+|. .|.. +...+.....||++++| |-+|+.-.-+|+++++++++..+.
T Consensus 263 ~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~ 316 (474)
T PLN02624 263 ADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIK 316 (474)
T ss_pred EeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhc
Confidence 999986 3210 12334455689999987 877751134788888776655443
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=79.77 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=123.2
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC---CCC-CC---CeEEEecccCchhHHHHHHHHHHc
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY---PFH-TN---KKLLTMFDYESQSVNWMAQSAKEK 265 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl---pf~-~G---d~ILT~~DhEHnSVl~~~~~Akrk 265 (872)
|....+..++=+-++.+||+++++.... |.|.|+|+-+.-..+ ..+ +| -++++.. +....|-.+|+.-
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~-t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~----~v~~a~eK~a~yf 190 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAPSDSCGCG-TVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQ----NVHAAFEKAARYF 190 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCCccccCcc-ccccchHHHHHHHHHHHHHHhccCCCCccccchH----HHHHHHHHHHhhE
Confidence 3334566777788999999997653333 567777732222222 111 12 1244442 2233566777778
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHH-CCcEEEeeccccCCC
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQ-NHWHVLLDAGSLGPK 343 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are-~G~~VLVDAAQ~aG~ 343 (872)
+++++.+|++..+.++|+.++.+.+.. +|.+++...-+-.+|.+=|++. ..++.+ .++.+++||+-. |.
T Consensus 191 ~v~l~~V~~~~~~~~~D~~k~~~~i~e--------Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G-gF 261 (491)
T KOG1383|consen 191 EVELREVPLDEGDYRVDPGKVVRMIDE--------NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG-GF 261 (491)
T ss_pred EEEEEeeeccccceEecHHHHHHHhcc--------ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc-cc
Confidence 999999999977788999999888864 6999999999999999999985 456666 999999999942 21
Q ss_pred -------CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 344 -------DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 344 -------~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+.++|+..-++--+.+++||.... |.|+|..+-|..
T Consensus 262 i~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~-~~G~~~vl~r~k 305 (491)
T KOG1383|consen 262 INPAGYLNEEEFDFRVPGVTSISADGHKYGLA-PAGSSWVLYRNK 305 (491)
T ss_pred cccccccCccccccCCCCceeEeeccceeeee-ecCcEEEEEccc
Confidence 1125777777888899999995334 999998665554
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=79.76 Aligned_cols=169 Identities=11% Similarity=0.045 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+|.+.+|+++||+.. -..|.|+|.+++.++.+. ..+||.||+.- ..|-||..- +.-.|++.++++..+
T Consensus 195 G~i~eAe~~aA~~fgAd~t---yfvvNGTS~~n~av~~a~-~~~Gd~VLvdR-N~HKSv~~a---Lilsga~PVYl~P~~ 266 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQS---YIVTNGTSTSNKIVGMYA-APAGSTLLIDR-NCHKSLAHL---LMMSDVVPIWLKPTR 266 (713)
T ss_pred hHHHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHHHh-cCCCCEEEeec-ccHHHHHHH---HHHcCCeeEEecccc
Confidence 5778899999999999753 566788899999888876 57899988764 468888653 334689999986544
Q ss_pred CC----CccCH-----HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHCCcEE-EeeccccCCCCC
Q 002866 277 PT----LKLCS-----TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQNHWHV-LLDAGSLGPKDM 345 (872)
Q Consensus 277 p~----g~Id~-----edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~G~~V-LVDAAQ~aG~~m 345 (872)
+. +.|+. +.++++|..... . .+.+.++++. ++--|+.++++.|. .+ |+.+ |+|.|+.+-..-
T Consensus 267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~-~--~~p~~vvit~-pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F 339 (713)
T PRK15399 267 NALGILGGIPRREFTRDSIEEKVAATTQ-A--QWPVHAVITN-STYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHF 339 (713)
T ss_pred cccCCcCCCChhhccHHHHHHHHHhCCC-c--CCceEEEEEC-CCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhc
Confidence 22 23455 888888875321 1 1224555554 35689999998654 44 6666 799997542100
Q ss_pred cc--CCCCCC----CCcEE---EEcccccCCCCCCceEEEEEeCC
Q 002866 346 DS--LGLSLF----RPDFI---ITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 346 ip--LDLs~l----~~DFl---v~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.| .+.+.+ ++|.+ +-|.||.+++ -+....|-||..
T Consensus 340 ~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~ 383 (713)
T PRK15399 340 HPIYQGKSGMSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKGE 383 (713)
T ss_pred CcccCCcChhhCCCCCCeeeeeeeehhccccc-cchheeeeecCC
Confidence 12 112222 35666 9999999887 888889988764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00073 Score=74.85 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCc---------EE
Q 002866 201 DIKTRIMDHLNIPE-NEYGLVFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGA---------KV 269 (872)
Q Consensus 201 eARerIA~lLgA~~-dEY~VVFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa---------eV 269 (872)
+.+.+++++++... .+ .++|++++++|+..+.... .+...++|++.....|.+............. .+
T Consensus 71 ~~~~~la~~l~~~~~~~-~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (377)
T PRK02936 71 SLQEEVASLLAENSAGD-LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGF 149 (377)
T ss_pred HHHHHHHHHHHhcCCCC-EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCc
Confidence 34555555555321 12 5999999999988776632 1222345666543345544433221110000 11
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPK 343 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~ 343 (872)
..+|.+ +.+++++.+. +++++|.+..+.+.+|...+ ++ ....|+++|+++++|-++. .|.
T Consensus 150 ~~~~~~------d~~~l~~~~~--------~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~ 215 (377)
T PRK02936 150 THVPFN------DIKALKEVMN--------EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGR 215 (377)
T ss_pred eEeCCC------CHHHHHHhcc--------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 222211 4677777664 24789999888888887643 54 3467899999999999974 221
Q ss_pred C--CccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 344 D--MDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~--mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
. +..+......+|.+ ++-|.++. | +|++..+++..+.+
T Consensus 216 ~g~~~~~~~~~~~~di~--t~sK~l~~---G~~ig~v~~~~~~~~~~ 257 (377)
T PRK02936 216 TGTLFAYEQFGLDPDIV--TVAKGLGN---GIPVGAMIGKKELGTAF 257 (377)
T ss_pred CchhhHHHhhCCCCcEE--EEcccccC---CCccEEEEEcHHHHhhc
Confidence 1 11111223457854 57898873 5 78887777665544
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00052 Score=83.20 Aligned_cols=170 Identities=9% Similarity=0.028 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+|.+.+|+++||+.. -..|.|+|.|++.++.+. ..+||.||+.- ..|-||..- +.-.|++.++++..+
T Consensus 195 G~i~eAe~~AA~~fgAd~t---yfvvNGTS~~n~av~~a~-~~~Gd~VLvdR-N~HKSv~ha---Lilsga~PVYl~P~r 266 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRS---YMVTNGTSTANKIVGMYS-APAGSTVLIDR-NCHKSLTHL---MMMSDVTPIYFRPTR 266 (714)
T ss_pred hHHHHHHHHHHHHhCCCcE---EEEeCchHHHHHHHHHHh-cCCCCEEEeec-ccHHHHHHH---HHHcCCeEEEecccc
Confidence 5778999999999999753 566788888988888876 47899988764 468888653 334699999986554
Q ss_pred CC----CccC-----HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCc
Q 002866 277 PT----LKLC-----STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 277 p~----g~Id-----~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
+. +.|+ .+.++++|..... . .+...++++. ++--|+.++++.| ..++.++ +|+|-|+.+-..-.
T Consensus 267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~-a--k~p~~~vit~-pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~ 340 (714)
T PRK15400 267 NAYGILGGIPQSEFQHATIAKRVKETPN-A--TWPVHAVITN-STYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFS 340 (714)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCcc-c--cCccEEEEEC-CCCccEecCHHHHHHHhCCCC--EEEEccchhhhccC
Confidence 32 2345 7888888875321 1 1122455543 4668999999854 6778777 79999975421001
Q ss_pred c-C-CCCC--CCC---c--EEEEcccccCCCCCCceEEEEEeCC
Q 002866 347 S-L-GLSL--FRP---D--FIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 347 p-L-DLs~--l~~---D--Flv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+ + +.+. .+. | |++-|.||.+++ -+....|.||..
T Consensus 341 p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~ 383 (714)
T PRK15400 341 PIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGD 383 (714)
T ss_pred cccCCcChhhcCCCCCCceEEEEchhhcccc-hhHHhHHHHcCC
Confidence 1 1 1222 234 5 999999999887 777777777654
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=74.48 Aligned_cols=155 Identities=16% Similarity=0.086 Sum_probs=89.5
Q ss_pred cEEEeCCHHHHHHHHHhhCC-C----CCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC--CC-CccCHHHHHH
Q 002866 218 GLVFTVSRGSAFKLLAESYP-F----HTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW--PT-LKLCSTDLRK 288 (872)
Q Consensus 218 ~VVFTsnATeALnLVaeslp-f----~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~--p~-g~Id~edLe~ 288 (872)
.++|+.++++|+..++.... + ++| .+||+.....|.+...........+....+.|... +. ..-+.+++++
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 174 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEK 174 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHH
Confidence 59999999998776554321 1 123 34665543346655433322211111111111100 00 0124567776
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEEEE
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFIIT 360 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~ 360 (872)
++. .++.+|.+..+.+..|.+.| ++.+ +.|+++|+++++|-+|.+ |.. +...+.-...||++++
T Consensus 175 ~l~--------~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~ 246 (395)
T PRK03715 175 LIT--------DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL 246 (395)
T ss_pred HcC--------CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeee
Confidence 663 24788999999999999988 7644 567999999999999862 110 1111222346999888
Q ss_pred cccccCCCCCCceEEEEEeCCCc
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
+ |-+|+ -.-+|+++++++..
T Consensus 247 g--K~lg~-G~p~~av~~~~~i~ 266 (395)
T PRK03715 247 G--KGIGG-GVPLAALLAKAEVA 266 (395)
T ss_pred h--hhhhC-CcceEEEEEccccc
Confidence 6 87664 12278888877753
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=71.53 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|+|.++ .+.-.+.+.+++.+ .+. .. ..+++-.......+.-++++++++. + .+.|
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~-------~~~-~~---~~~~~~~~~~~~~~l~~~l~~~~~~--~--~~~~ 102 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKE-------QGE-KL---WHISNVFTNEPALRLAKKLIDATFA--E--RVFF 102 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHH-------HHH-hc---CcccCccCCHHHHHHHHHHHhhCCC--C--EEEE
Confidence 4577899765 34456677776533 111 11 1111111112234666777777654 2 5999
Q ss_pred eCCHHHHHHHHHhhC-CCC-----CCC-eEEEecccCchhHHHHHHHH----HHcC-----cEEEEEeccCCCCccCHHH
Q 002866 222 TVSRGSAFKLLAESY-PFH-----TNK-KLLTMFDYESQSVNWMAQSA----KEKG-----AKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 222 TsnATeALnLVaesl-pf~-----~Gd-~ILT~~DhEHnSVl~~~~~A----krkG-----aeV~~Vpvd~p~g~Id~ed 285 (872)
+.++++|+.....-. .+. .++ .|++....-|.+........ ...| ..+..+|.+ |.++
T Consensus 103 ~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~ 176 (403)
T PRK05093 103 ANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN------DLAA 176 (403)
T ss_pred eCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC------CHHH
Confidence 999999766544321 111 233 35544332355443322210 0011 123333321 5677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
+++.+.. ++++|.+.-+++..|.+.| ++ ++..|+++|+++++|=++. .+.. +.........||.
T Consensus 177 l~~~l~~--------~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi 248 (403)
T PRK05093 177 VKAVIDD--------HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDI 248 (403)
T ss_pred HHHHhcC--------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCE
Confidence 7776642 4778888876666666544 44 3567899999999999965 2211 1122223456887
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++ =|.+|+ | +|+++.++++++.+.
T Consensus 249 ~s~--sK~l~~---G~rig~vv~~~~i~~~l~ 275 (403)
T PRK05093 249 LTS--AKALGG---GFPIGAMLTTAEIASHFK 275 (403)
T ss_pred EEe--cccccC---CcceEEEEEcHHHHhhcC
Confidence 655 498873 6 899988887766554
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=77.29 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+|.+.+|+.+|++.. -..+.|+|.|++.|+.+. ..+||.||..-+ .|-|+..-+- -.|+.-+++.-..
T Consensus 70 G~i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~-~~~GD~VLvdRN-~HKSi~~gli---laGa~Pvyl~p~~ 141 (557)
T COG1982 70 GPIKEAQELAARVFGADHT---YFVVNGTSTANKAVINAV-LTPGDKVLVDRN-CHKSIHHGLI---LAGATPVYLEPSR 141 (557)
T ss_pred ccHHHHHHHHHHHhCCCce---EEEECCccHHHHHHHHhh-cCCCCEEEecCC-ccHHHHHHHH---HcCCceEEecCCC
Confidence 4567899999999999753 455688889999999887 478999888744 5777764322 2477776664322
Q ss_pred CC-----CccCHHHHHHHHhhhhccCCCCCc-eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC---CCc
Q 002866 277 PT-----LKLCSTDLRKQISSKKRRKKDSAA-GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK---DMD 346 (872)
Q Consensus 277 p~-----g~Id~edLe~~I~~~~rr~~~~~T-~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~---~mi 346 (872)
+. +.|+.+.+.+.+.+.+ .. ++.+++. ++--|+.++++ ++..++..+++|++|-++-+.. .|.
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~------~~~k~~vitn-pTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l 214 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHP------DAEKLAVITN-PTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPML 214 (557)
T ss_pred CccccccCCCCHHHHHHHHHhCh------hhheeEEEec-CccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccC
Confidence 21 4578999988876532 23 5666653 34579999998 5678899999999999964432 212
Q ss_pred cCCCC-CCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 347 SLGLS-LFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 347 pLDLs-~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+ +.. +.+.||++=|.||.+++ -+=.-.|.++.
T Consensus 215 ~-~~~~~~~~~~~tqS~HK~l~a-lSQaS~iHv~~ 247 (557)
T COG1982 215 P-ESALNGGADFVTQSTHKLLAA-LSQASMIHVKD 247 (557)
T ss_pred c-chhhhcCceEEEechhhhhhh-hhhhHHHhhCC
Confidence 2 222 26899999999999886 45556666665
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=73.27 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=117.6
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+. +..++.+++++.+ .+ ... ..|.-++ ....+.+++|++++... + .|+|
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~-------q~-~~~---~~~~~~~--~~~~~lae~l~~~~~~~-~--~v~~ 109 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKE-------AL-ERG---TSYGAPT--EAEILLAKEIISRVPSV-E--MVRF 109 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHH-------HH-HhC---CcCCCCC--HHHHHHHHHHHHhCCcc-c--EEEE
Confidence 45789997543 3456778777543 11 111 1233233 34567899999988643 2 5999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHHHcCc-----------------EEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA-----------------KVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa-----------------eV~~Vpvd~p~g~Id~ 283 (872)
|.++|+|+..++.. ..+...++||+....-|......... ...|. .+..+| . -+.
T Consensus 110 ~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~d~ 182 (423)
T TIGR00713 110 VNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVK-AGSGAATLGLPTSPGVPEDFAKLTLVLP--Y----NDL 182 (423)
T ss_pred eCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhcc-ccCcccccCCCCCCCCCcccccceEEeC--C----CCH
Confidence 99999988765542 12233466776433223322211110 00010 111111 1 157
Q ss_pred HHHHHHHhhhhccCCCCCceEEEE-eCccCcccchhcH----HH-HHHHHHCCcEEEeeccccCCC-C-CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVF-PVQSRVTGAKYSY----QW-MALAQQNHWHVLLDAGSLGPK-D-MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~-p~vSNvTG~i~PL----e~-I~~Are~G~~VLVDAAQ~aG~-~-mipLDLs~l~~ 355 (872)
++|++++... ..+++.|.+ |.++| +|.+.|- +. .+.|+++|+++++|=++..-. . +.........|
T Consensus 183 ~~l~~~i~~~-----~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~p 256 (423)
T TIGR00713 183 EALEEVFEEY-----GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEP 256 (423)
T ss_pred HHHHHHHHHc-----CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCc
Confidence 8888888632 134666666 56666 8999883 33 456789999999999974211 0 01111123457
Q ss_pred cEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
|.+ ++=|.+|. | +|+++.++++++.+.
T Consensus 257 Di~--t~sK~l~~---G~pig~v~~~~~i~~~~~ 285 (423)
T TIGR00713 257 DLT--TLGKIIGG---GLPVGAFGGRREIMERLA 285 (423)
T ss_pred chh--hhhhhhcC---CCceeeeeEHHHHHHhhC
Confidence 854 57888773 5 788888887776664
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0031 Score=71.82 Aligned_cols=219 Identities=10% Similarity=0.050 Sum_probs=116.6
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+.+++.+. + ..+. +..+ +.++ ....+.-++|++++.... ..|.
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q-------~-~~~~-~~~~~~~~~--~~~~~la~~l~~~~p~~~--~~v~ 106 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQ-------L-DRLD-HVIFAGFTH--EPAERLAQRLVALTPGGL--DHVF 106 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHH-------H-hhCC-CccccccCC--HHHHHHHHHHHHhCCCCC--CEEE
Confidence 45789997544 33456777765331 1 1111 1111 1222 233455667777764222 2699
Q ss_pred EeCCHHHHHHHHHh---hC---CCCCCC-eEEEecccCchhHHHHHHHHHHc-------C--cEEEEEeccCCC-CccCH
Q 002866 221 FTVSRGSAFKLLAE---SY---PFHTNK-KLLTMFDYESQSVNWMAQSAKEK-------G--AKVYSAWFKWPT-LKLCS 283 (872)
Q Consensus 221 FTsnATeALnLVae---sl---pf~~Gd-~ILT~~DhEHnSVl~~~~~Akrk-------G--aeV~~Vpvd~p~-g~Id~ 283 (872)
|+.++|||+..... .+ .-.+|+ +||+....-|....++....... + ..+..+++..++ ...+.
T Consensus 107 f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 186 (423)
T PRK05964 107 FSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATL 186 (423)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHH
Confidence 99999997665433 22 111333 46654332244343333211110 0 123344443211 01125
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
+.+++.|... ..+...|.+.- +....|.+.| ++. ...|+++|+++++|-+|. .|.. +...+.....
T Consensus 187 ~~l~~~l~~~-----~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~ 261 (423)
T PRK05964 187 DALEALLEKH-----AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVS 261 (423)
T ss_pred HHHHHHHHhC-----CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCC
Confidence 6677767532 12454555544 6777888885 443 356799999999999984 3210 1112333457
Q ss_pred CcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 355 PDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
||+++++ |++++ . ..+|+++.++++.+.+.
T Consensus 262 pDi~~~~--K~l~g-G~~p~~av~~~~~i~~~~~ 292 (423)
T PRK05964 262 PDIMCLS--KGLTG-GYLPLAATLCTAEIFEAFY 292 (423)
T ss_pred CCeeeee--hhhhc-CcccceEEEEcHHHHHhhh
Confidence 9998887 98865 3 34788888888776553
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=74.13 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCC-CC---CCcE--EEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 199 EHDIKTRIMDHLNIP-EN---EYGL--VFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 199 ieeARerIA~lLgA~-~d---EY~V--VFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
..+.|+.|++++.-. .. +..| +-|.+++.|..++...+. +.+||+|++.. ++.......++..|+++..
T Consensus 93 ~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~----P~y~~y~~~~~~~g~~~~~ 168 (423)
T PLN02397 93 LAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPN----PTWGNHHNIFRDAGVPVRT 168 (423)
T ss_pred CHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeC----CCchhHHHHHHHcCCeEEE
Confidence 346888888876321 10 1123 224454445443332211 24899987652 2222334456678999999
Q ss_pred Eec-cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc-c-cCCCC
Q 002866 272 AWF-KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG-S-LGPKD 344 (872)
Q Consensus 272 Vpv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA-Q-~aG~~ 344 (872)
+|. +..+..++.+.+++.+... .+++++++++.-+|.||..++.+. +..|++++++++.|-+ . +...+
T Consensus 169 v~l~~~~~~~~d~~~l~~~l~~~-----~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~ 243 (423)
T PLN02397 169 YRYYDPKTRGLDFDGLLEDLKAA-----PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGD 243 (423)
T ss_pred eecccCcCCccCHHHHHHHHHhC-----CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCc
Confidence 987 2223467888888777531 246899999999999999999863 3567889999999987 2 22100
Q ss_pred ----CccC-CCCCCCC-cEEEEcccccCCCCCCc--eEEEE
Q 002866 345 ----MDSL-GLSLFRP-DFIITSFYRVFGFDPTG--FGCLL 377 (872)
Q Consensus 345 ----mipL-DLs~l~~-DFlv~S~HK~fG~~PtG--vG~Ly 377 (872)
..++ .+...+. =+++.|+=|.|+ +.| +|.++
T Consensus 244 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~--~~G~RvG~~v 282 (423)
T PLN02397 244 LDADAQSVRMFVEDGHEILVAQSYAKNMG--LYGERVGALS 282 (423)
T ss_pred hhhhhHHHHHHHhcCCcEEEEEECcccCC--CccccceEEE
Confidence 0010 1111111 156779999888 345 57665
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0047 Score=69.73 Aligned_cols=206 Identities=12% Similarity=0.115 Sum_probs=114.1
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|..+ .+.-.+.+++++.+. + ..+. ..+...+.....+.-++++++++. + .+.|
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~-------~-~~~~---~~~~~~~~~~~~~la~~L~~~~~~--~--~~~f 97 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQ-------A-DKLW---HIGNGYTNEPVLRLAKKLVDATFA--D--KVFF 97 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHH-------H-Hhcc---cccCccCCHHHHHHHHHHHhhCCC--C--EEEE
Confidence 3467888766 334556777765331 1 1110 111101123445677888888764 2 5999
Q ss_pred eCCHHHHHHHHHhhC-CC-----CCCC-eEEEecccCchhHHHHHHHHHH----c-----CcEEEEEeccCCCCccCHHH
Q 002866 222 TVSRGSAFKLLAESY-PF-----HTNK-KLLTMFDYESQSVNWMAQSAKE----K-----GAKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 222 TsnATeALnLVaesl-pf-----~~Gd-~ILT~~DhEHnSVl~~~~~Akr----k-----GaeV~~Vpvd~p~g~Id~ed 285 (872)
++++++|+..+.... .+ .+|. +||+....-|.+.......... . ...+..+|. + +.++
T Consensus 98 ~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----d~~~ 171 (397)
T TIGR03246 98 CNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY--N----DLAA 171 (397)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC--C----CHHH
Confidence 999999876655432 11 1233 4665433335554433221110 0 012222322 1 5678
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchh-c---HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-S---YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-P---Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
++++|.. ++.+|.+..+.+..|.+. | ++. .+.|+++|+++++|=+|. .|.. +.....-...||.
T Consensus 172 l~~~l~~--------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi 243 (397)
T TIGR03246 172 AKALISD--------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDI 243 (397)
T ss_pred HHHHhcc--------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCE
Confidence 8877742 478888888888888765 3 443 356799999999999973 1110 0111111246887
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++ +=|-+|+ | +|++..++++++.+.
T Consensus 244 ~t--~~K~lgg---G~pigav~~~~~i~~~~~ 270 (397)
T TIGR03246 244 LT--SAKALGG---GFPIGAMLTTTEIAAHLK 270 (397)
T ss_pred EE--eehhhhC---CcceeEEEEcHHHHHhcc
Confidence 74 4676652 3 688887777665543
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.002 Score=74.47 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=120.7
Q ss_pred ceeccc---CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 150 KVCLDY---CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDy---AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
.||.|- .+|..++..+..+++. . ...|+ .|+ +.+..++++++||-. .+++|...
T Consensus 41 dV~IDLrSDTgT~apS~~m~aAM~~-------------G-DD~Y~gdpS----v~~Lee~vael~G~E----~alpthqG 98 (467)
T TIGR02617 41 DVFIDLLTDSGTGAVTQSMQAAMMR-------------G-DEAYSGSRS----YYALAESVKNIFGYQ----YTIPTHQG 98 (467)
T ss_pred CeEEECccCCCCCCCCHHHHHHHHc-------------C-CcccccCch----HHHHHHHHHHHhCCc----eEEECCCC
Confidence 566664 3444466666665431 1 12354 343 457788899999974 28999988
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecc---cCchhHHH-HHHHHHHcCcEEEEEecc--------CC-CCccCHHHHHHHHhh
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFD---YESQSVNW-MAQSAKEKGAKVYSAWFK--------WP-TLKLCSTDLRKQISS 292 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~D---hEHnSVl~-~~~~AkrkGaeV~~Vpvd--------~p-~g~Id~edLe~~I~~ 292 (872)
+.+-+++...+.-.+|+++++... ..||.... ..-.+.-.|+.+..++.+ .+ .|.++.++|+++|..
T Consensus 99 RgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~ 178 (467)
T TIGR02617 99 RGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEE 178 (467)
T ss_pred chHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhh
Confidence 999888877664335665542211 01222111 122344468887765321 22 478999999999974
Q ss_pred hhccCCCCCceEEEEeCccC-cccchhcHHHHH----HHHHCCcEEEeeccccC-----------CCCCccCCCCC----
Q 002866 293 KKRRKKDSAAGLFVFPVQSR-VTGAKYSYQWMA----LAQQNHWHVLLDAGSLG-----------PKDMDSLGLSL---- 352 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSN-vTG~i~PLe~I~----~Are~G~~VLVDAAQ~a-----------G~~mipLDLs~---- 352 (872)
.. ..+...+..+..+| .-|+..|++.++ .|+++|+.+++|||=++ +. ....+.+
T Consensus 179 ~g----~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a--~~~si~eI~rE 252 (467)
T TIGR02617 179 VG----PNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEY--KNWSIEQITRE 252 (467)
T ss_pred cC----CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhh--cCCCHHHHHHH
Confidence 21 01122333333334 358899998553 46899999999997322 21 1233332
Q ss_pred --CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 353 --FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 353 --l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
-.+|.+++|+-|-+|. |-| |+|..+++
T Consensus 253 ~~~~aDsvt~slsKglgA-pvG-g~Lag~d~ 281 (467)
T TIGR02617 253 TYKYADMLAMSAKKDAMV-PMG-GLLCFKDD 281 (467)
T ss_pred hhccCCEEEEEcCCCCCC-ccc-ceEEecch
Confidence 3689999999999998 654 34455555
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=74.48 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=117.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHHHH----HHHHhh-CCC--CCCC-----eEEEecccCchhHHHHHHHHHHcC--
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAF----KLLAES-YPF--HTNK-----KLLTMFDYESQSVNWMAQSAKEKG-- 266 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATeAL----nLVaes-lpf--~~Gd-----~ILT~~DhEHnSVl~~~~~AkrkG-- 266 (872)
++=.++-+..|-+.. -+=||++|++-+. +..-+. +|- ..|- -|+...+..|=|+.- .|.-.|
T Consensus 145 ~vl~km~~ivGw~~~-~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k---aAa~lg~g 220 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEG-GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK---AAAFLGLG 220 (510)
T ss_pred HHHHHHHHHhCCCCC-CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH---HHHHhccC
Confidence 344444555676653 2358998887653 332222 231 1232 144444556666653 333345
Q ss_pred -cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC
Q 002866 267 -AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 267 -aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
-.+..|+.+. .|.+.+++|++.|...+. ++-..-+|..++-+.+.|+.=||+ ++..|++++.++|||||-.+|.
T Consensus 221 td~c~~v~t~e-~Gkm~~~dLe~kile~k~--kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGgl- 296 (510)
T KOG0629|consen 221 TDHCIKVKTDE-RGKMIPDDLEKKILEAKA--KGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGL- 296 (510)
T ss_pred CceeEEecccc-cCccchHHHHHHHHHHHh--cCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeeccccccc-
Confidence 5677888877 689999999998876432 233357899999999999999998 5567899999999999976654
Q ss_pred CccCC----CC-CCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 345 MDSLG----LS-LFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 345 mipLD----Ls-~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+++.. |. --++|-++-+.||+.|+ |.-+++++.|.+-
T Consensus 297 LmS~k~R~kl~Giera~SvtwnpHK~~ga-plqCsa~l~r~~g 338 (510)
T KOG0629|consen 297 LMSRKHRHKLTGIERANSVTWNPHKLMGA-PLQCSAFLTREEG 338 (510)
T ss_pred ccChhhHhhccCccccCceeecHHHhhcC-cchhhHHHHHHHH
Confidence 12211 11 12689999999999999 8999999888864
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0098 Score=67.38 Aligned_cols=206 Identities=10% Similarity=0.095 Sum_probs=110.5
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+ .+.-.+.+++++.+ .+. .+. ..+.........+.-++++++++. + .|.|
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~-------~~~-~~~---~~~~~~~~~~~~~la~~l~~~~~~--~--~v~~ 101 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNE-------QAS-KFW---HTGNGYTNEPVLRLAKKLIDATFA--D--RVFF 101 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHH-------HHh-hcc---cccCccCCHHHHHHHHHHHhhCCC--C--eEEE
Confidence 3467888755 33445667776533 111 110 111111123345677788888754 2 5999
Q ss_pred eCCHHHHHHHHHhhC-CC-----CC-CCeEEEecccCchhHHHHHHHHHHc----C-----cEEEEEeccCCCCccCHHH
Q 002866 222 TVSRGSAFKLLAESY-PF-----HT-NKKLLTMFDYESQSVNWMAQSAKEK----G-----AKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 222 TsnATeALnLVaesl-pf-----~~-Gd~ILT~~DhEHnSVl~~~~~Akrk----G-----aeV~~Vpvd~p~g~Id~ed 285 (872)
+.++++|+..+.... .+ .+ ...|++....-|............. + ..+..+| . -+.++
T Consensus 102 ~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~d~~~ 175 (406)
T PRK12381 102 CNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAA--Y----NDLNS 175 (406)
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeC--C----CCHHH
Confidence 999999866654421 11 12 3456654332344433222111100 0 0122222 1 14677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchh-cHH----HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-SYQ----WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-PLe----~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
+++.|.. ++..|.+.-+...-|.+. |.+ ..+.|+++|+++++|=++. .|.. +.........||.
T Consensus 176 l~~~l~~--------~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi 247 (406)
T PRK12381 176 ASALIDD--------QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV 247 (406)
T ss_pred HHHhccC--------CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE
Confidence 7776742 477777777665566543 333 3456799999999999973 2221 1111222346887
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+ ++=|.+|+ | +|++..++++++.+.
T Consensus 248 ~--t~sK~l~g---G~~ig~~~~~~~~~~~~~ 274 (406)
T PRK12381 248 L--TTAKALGG---GFPIGAMLTTEKCASVMT 274 (406)
T ss_pred E--EehhhhhC---CCceEEEEEcHHHHhhcC
Confidence 5 45588763 4 788888877665553
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=66.65 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=110.8
Q ss_pred CCceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+ .+-..+.+++++.+ -..++. ..+.....+...+.-++++++++.+ .++|
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~--------ql~~~~---~~~~~~~~~~~~~la~~l~~~~~~~----~v~~ 86 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSE--------QLEKLV---VAGPMFEHEEKEEMLEELSKWVNYE----YVYM 86 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHH--------HHHhcC---CccCCcCCHHHHHHHHHHHhhcCCC----EEEE
Confidence 4578999754 23344667776533 111111 1111111233445566788887642 4999
Q ss_pred eCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHH----HHHcCc-----EEEEEeccCCCCccCHHHHHHHHh
Q 002866 222 TVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQS----AKEKGA-----KVYSAWFKWPTLKLCSTDLRKQIS 291 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~----AkrkGa-----eV~~Vpvd~p~g~Id~edLe~~I~ 291 (872)
+.++|+|+...........| ++|++...--|......... ..+.+. .+..+|.. +.+.+++.+.
T Consensus 87 ~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~------d~~~l~~~i~ 160 (364)
T PRK04013 87 GNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN------DVEAAKEAIT 160 (364)
T ss_pred eCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC------CHHHHHHHhc
Confidence 99999987776553222234 56776543224433222210 011121 12222221 4566766664
Q ss_pred hhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc---CCCCCccCCCCCCCCcEEEEccc
Q 002866 292 SKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL---GPKDMDSLGLSLFRPDFIITSFY 363 (872)
Q Consensus 292 ~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~---aG~~mipLDLs~l~~DFlv~S~H 363 (872)
. ++..|.+..+....|.+.| ++.+ +.|+++|+.+++|-+|. .|+ +.....-.+.||.+++ =
T Consensus 161 ~--------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~-~~a~~~~gv~PDiv~~--g 229 (364)
T PRK04013 161 K--------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK-FLAIEHYKVEPDIVTM--G 229 (364)
T ss_pred C--------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc-hhHHHhcCCCCCEEEe--c
Confidence 2 4677777777777777664 4544 45799999999999987 332 1222333467998888 4
Q ss_pred ccCCCC-CCceEEEEEeCCC
Q 002866 364 RVFGFD-PTGFGCLLIKKSV 382 (872)
Q Consensus 364 K~fG~~-PtGvG~LyVRk~~ 382 (872)
|-+|+. | +|+++.+.+.
T Consensus 230 K~lggG~P--~~a~~~~~~~ 247 (364)
T PRK04013 230 KGIGNGVP--VSLTLTNFDV 247 (364)
T ss_pred ccccCCce--eEEEEecccc
Confidence 765530 2 6777777664
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0066 Score=69.54 Aligned_cols=167 Identities=14% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH----HHHHHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcCcE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA----FKLLAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeA----LnLVaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
+++.+..+-+.+.-|.+. |-+.+++... =-++++.|.-..|+ .+|+. +.-|..-.. .|.--|.+
T Consensus 109 ~li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP-~SAHGTNPA---SAam~G~~ 180 (496)
T COG1003 109 ELIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIP-DSAHGTNPA---SAAMAGFK 180 (496)
T ss_pred HHHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEee-ccccCCChh---hHhhcCce
Confidence 677888888888888752 7788776552 22455666433333 23443 323332221 23446999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch-hcHH-HHHHHHHCCcEEEeecc---ccCCC
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK-YSYQ-WMALAQQNHWHVLLDAG---SLGPK 343 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i-~PLe-~I~~Are~G~~VLVDAA---Q~aG~ 343 (872)
|+.|+.+. +|.||.++|++++.. ++.-+-++.- |..|.- ..|. ++++.|++|..|-.|+| +.+|.
T Consensus 181 VV~V~~~~-~G~VDlddLk~k~~~--------~~AalMiTnP-sT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~ 250 (496)
T COG1003 181 VVVVKCDE-NGNVDLDDLRAKAED--------NLAALMITNP-STLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGL 250 (496)
T ss_pred EEEEecCC-CCCccHHHHHHHhcc--------ceeEEEeccC-cccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcc
Confidence 99999987 689999999988863 2443434332 345643 3455 45567999999999999 44664
Q ss_pred CCccCCCCCCCCcEEEEcccccCCCCCC-----ceEEEEEeCCCcccc
Q 002866 344 DMDSLGLSLFRPDFIITSFYRVFGFDPT-----GFGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~mipLDLs~l~~DFlv~S~HK~fG~~Pt-----GvG~LyVRk~~i~~L 386 (872)
.---+++.|.+=++.||.|+. |- |.|=.-||..+.+.|
T Consensus 251 ----~rPGd~G~DV~HlNLHKTF~i-PHGGGGPG~GPvgVk~~L~pfL 293 (496)
T COG1003 251 ----ARPGDMGFDVVHLNLHKTFCI-PHGGGGPGAGPVGVKAHLAPFL 293 (496)
T ss_pred ----ccccccccceEEeeccccccc-CCCCCCCCCCceehHhhccccC
Confidence 223457999999999998765 43 444555555444433
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0038 Score=70.88 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 201 DIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 201 eARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.-|+++|+|+. .+|+ .||.|.|+|.|+++++-.+. .+|+.+|+++-|- +.. -+...=+.|++++.+
T Consensus 125 ~frqa~A~Fm~~~r~~~v~fdP~--~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY-~gf--drdl~~rTgveivpv 198 (471)
T KOG0256|consen 125 SFRQAVAEFMERARGNRVKFDPE--RVVVTNGATSANETLMFCLA-DPGDAFLVPTPYY-PGF--DRDLRWRTGVEIVPV 198 (471)
T ss_pred HHHHHHHHHHHHHhCCCCccCcc--ceEEecccchhhHHHHHHhc-CCCceeeecCCCC-Ccc--cccceeccCceEEEE
Confidence 46666776654 2454 69999999999999998875 5899887665432 222 122233469999888
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-H---HHHHHCCcEEEeeccc
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-M---ALAQQNHWHVLLDAGS 339 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I---~~Are~G~~VLVDAAQ 339 (872)
..+.. +.+|+.+.|+.++.+.+ +.+.+.+=+.++--+|..|+.++=+. + .-|.++++||++|=.=
T Consensus 199 ~c~Ss~~f~itv~alE~A~~~A~--~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIy 268 (471)
T KOG0256|consen 199 HCSSSNGFQITVEALEAALNQAR--KLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIY 268 (471)
T ss_pred EeecCCCccccHHHHHHHHHHHH--HhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhh
Confidence 76543 45889999999887543 23446777778888999999999863 2 4467899999999873
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.032 Score=63.71 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=112.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCC-CCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPEN-EYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~d-EY~VV 220 (872)
++.-|||..+. +--.+.+++++.+. +.. +. ..+......+...+.=+++++++..+.. .+.++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q-------l~~-~~--~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~ 102 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDY-------LAD-DG--IIHSLDMATEAKREFLETFNEIILKPRGLDYKVQ 102 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHH-------Hhh-cc--ceeccccCcHHHHHHHHHHHHhccCccCCCceEE
Confidence 45789997544 44567777775431 111 10 0011010112223344455555422211 12477
Q ss_pred Ee-CCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH----HHcC-----cEEEEEeccCCCC--ccCHHHHH
Q 002866 221 FT-VSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA----KEKG-----AKVYSAWFKWPTL--KLCSTDLR 287 (872)
Q Consensus 221 FT-snATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A----krkG-----aeV~~Vpvd~p~g--~Id~edLe 287 (872)
|+ .+++||+.....- ..+....+||+....-|....+..... .+.+ ..+..+|...... .-+.+.++
T Consensus 103 f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 182 (412)
T TIGR02407 103 FPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFE 182 (412)
T ss_pred EeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHH
Confidence 85 7899976654432 222223456654432344443322211 1111 1233444321000 01245566
Q ss_pred HHHhhhhccCCCCCceEEEEeCccCcccchh-cHHH----HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEE
Q 002866 288 KQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-SYQW----MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFII 359 (872)
Q Consensus 288 ~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-PLe~----I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv 359 (872)
+++.... ....++..|.+.-+.+..|.+. |-.. .+.|+++|+++++|-+|. .|.. +...+...+.||+++
T Consensus 183 ~~~~~~~--~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~ 260 (412)
T TIGR02407 183 KLLEDSS--SGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC 260 (412)
T ss_pred HHHHhcc--CCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE
Confidence 6665321 0112456777777778889854 4332 346789999999999985 2210 123344556899998
Q ss_pred EcccccCCCCCCc--eEEEEEeCCC
Q 002866 360 TSFYRVFGFDPTG--FGCLLIKKSV 382 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~LyVRk~~ 382 (872)
++ |++| +.| +|+++++++.
T Consensus 261 ~~--K~lg--~~G~pigav~~~~~~ 281 (412)
T TIGR02407 261 LS--KSIS--GYGLPLALTLIKPEL 281 (412)
T ss_pred ec--hhcc--CCccceeEEEEchhh
Confidence 87 9987 445 8999998764
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0052 Score=69.26 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCCCCCCcEEEe--CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-------HHHHHcCcEEEEE
Q 002866 202 IKTRIMDHLNIPENEYGLVFT--VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-------QSAKEKGAKVYSA 272 (872)
Q Consensus 202 ARerIA~lLgA~~dEY~VVFT--snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-------~~AkrkGaeV~~V 272 (872)
.-+-.|+.||+.. .+|=. -++|+|+.+...++ +++||+++...--+...+...+ -.++..|++...+
T Consensus 59 le~iyA~vfgaE~---ALVRpq~vSGTHAi~~~Lfg~-LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v 134 (403)
T PF06838_consen 59 LERIYADVFGAED---ALVRPQFVSGTHAIALALFGV-LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREV 134 (403)
T ss_dssp HHHHHHHHCT-SE---EEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE-
T ss_pred HHHHHHHHhCchh---hhhcccccchHHHHHHHHHhc-CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEE
Confidence 3344688899843 34422 47899999999887 4799998854322222333322 1235679999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc----CcccchhcHH-HHHHHH--HCCcEEEeecc--ccCCC
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS----RVTGAKYSYQ-WMALAQ--QNHWHVLLDAG--SLGPK 343 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS----NvTG~i~PLe-~I~~Ar--e~G~~VLVDAA--Q~aG~ 343 (872)
++.. ++.+|.+.++++|+. +|++|.+.--. +.+=++-.|+ .|+.+| .-++.++||=| -++-+
T Consensus 135 ~L~~-dg~~D~~~i~~~~~~--------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 135 PLTE-DGTIDWEAIKKALKP--------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp -B-T-TSSB-HHHHHHHHHT--------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred eecC-CCCcCHHHHHHhhcc--------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 9976 689999999999973 58999986432 1111222232 234444 46899999998 34432
Q ss_pred CCccCCCCCCCCcEEEEcccccCCCC--CCceEEEEEeCCCcccc
Q 002866 344 DMDSLGLSLFRPDFIITSFYRVFGFD--PTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~mipLDLs~l~~DFlv~S~HK~fG~~--PtGvG~LyVRk~~i~~L 386 (872)
..-.+.++|.++.|.-|-.|+. |+| |.+.-|+++.+..
T Consensus 206 ----~EP~~vGADl~aGSLIKNpGGgiAptG-GYIaGr~~lVe~~ 245 (403)
T PF06838_consen 206 ----QEPTEVGADLMAGSLIKNPGGGIAPTG-GYIAGRKDLVERA 245 (403)
T ss_dssp ----S-GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHHH
T ss_pred ----cCccccchhheeccceeCCCCCccCcC-CEEechHHHHHHH
Confidence 2233469999999999975531 443 6666677776443
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=67.05 Aligned_cols=210 Identities=11% Similarity=0.091 Sum_probs=117.1
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +..++.+++++.+ .+ ... ..++.++ ....+.++++++++. ..+ .|.|
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~-------~~-~~~---~~~~~~~--~~~~~la~~L~~~~~-~~~--~v~~ 111 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIE-------AA-EKG---LSFGAPT--ELEVELAELVIELVP-SIE--MVRM 111 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHH-------HH-HhC---CcCCCCC--HHHHHHHHHHHHhCC-CCC--EEEE
Confidence 45678887653 2455677776533 11 111 1122222 334567778877763 123 5999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH------H----cCcEE----EEEeccCCCCccCHHHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK------E----KGAKV----YSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak------r----kGaeV----~~Vpvd~p~g~Id~edL 286 (872)
|.++++|+..++.. ..+..+++||+...--|........... . .+... ....+.. -+.+++
T Consensus 112 ~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~l 187 (426)
T PRK00062 112 VNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY----NDLEAV 187 (426)
T ss_pred ecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC----CCHHHH
Confidence 99999998876664 2233345666543323443322211100 0 01100 0112211 256788
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccCCC-C-CccCCCCCCCCcEEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLGPK-D-MDSLGLSLFRPDFII 359 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~aG~-~-mipLDLs~l~~DFlv 359 (872)
++.+... ..++..|.+..+...+|.+.| ++. .+.|+++|+++++|=++.+-. . +...+.-...||++
T Consensus 188 ~~~i~~~-----~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~- 261 (426)
T PRK00062 188 EELFEEY-----GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLT- 261 (426)
T ss_pred HHHHHhC-----CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchH-
Confidence 8777532 135778888777777999998 653 467899999999999976221 0 01111122357865
Q ss_pred EcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 360 TSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++-|.+|. | +|++..++++++.+.
T Consensus 262 -~~gK~l~~---G~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 262 -TLGKIIGG---GLPVGAFGGRREIMEQLA 287 (426)
T ss_pred -hhhhHhhC---CCcceeeeEHHHHHHhhc
Confidence 45687763 3 678877777766654
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.048 Score=62.47 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEe-CCHHHHHHHHHh---hCCCCCCCeEEEecccCchhHHHHHHHH----HHc--Cc--
Q 002866 201 DIKTRIMDHLNIPE-NEYGLVFT-VSRGSAFKLLAE---SYPFHTNKKLLTMFDYESQSVNWMAQSA----KEK--GA-- 267 (872)
Q Consensus 201 eARerIA~lLgA~~-dEY~VVFT-snATeALnLVae---slpf~~Gd~ILT~~DhEHnSVl~~~~~A----krk--Ga-- 267 (872)
+.=+++++.+..+. -++.+.|+ .++|||+..... .+ ....+||+...--|....+..... .+. |.
T Consensus 86 ~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~ 163 (425)
T PRK09264 86 EFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKV--TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPL 163 (425)
T ss_pred HHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHh--cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCC
Confidence 33345555543321 11247785 799997665433 33 223456654332244332222110 111 11
Q ss_pred -EEEEEeccCCC-Cc-cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeeccc
Q 002866 268 -KVYSAWFKWPT-LK-LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGS 339 (872)
Q Consensus 268 -eV~~Vpvd~p~-g~-Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ 339 (872)
.+..+|..... .. -+.++++++|.... ....++..|.+--+....|.+.| ++ +.+.|+++|+++++|-+|
T Consensus 164 ~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 241 (425)
T PRK09264 164 NNVTRMPYDGYFGGDVDTLAYLEKLLEDSS--SGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQ 241 (425)
T ss_pred CCeEEeCCCCccccchhHHHHHHHHHHhcc--CCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechh
Confidence 24455543110 00 14566777775321 01124567777767777887664 34 345789999999999998
Q ss_pred c-CC---CCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCC
Q 002866 340 L-GP---KDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSV 382 (872)
Q Consensus 340 ~-aG---~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~ 382 (872)
. .| + +...+...+.||+++++ |.+| +.| +|+++++++.
T Consensus 242 tG~GrtG~-~~~~~~~~v~PDi~t~~--K~l~--~~G~pigav~~~~~i 285 (425)
T PRK09264 242 AGCGRTGT-FFSFERAGITPDIVTLS--KSIS--GYGLPMALVLIKPEL 285 (425)
T ss_pred hCCccccH-HHHHhhcCCCCCEEEec--cccC--CCccceEEEEEchhh
Confidence 4 22 1 12233344689998887 9877 345 4888887664
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=66.43 Aligned_cols=162 Identities=11% Similarity=0.103 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH---HHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS---AFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYS 271 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATe---ALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~ 271 (872)
.+.+.+-..-|+++.|.+-.. .-.-.++|. |+.+..+... +++++++++.. -|+... -+..+++-.|++|..
T Consensus 109 Lq~lfe~Qs~i~eLTGmdvaN--aSlyd~atA~aEa~~ma~r~~~-~~~~~vlv~~~-~hP~~~~v~~t~a~~~g~~iv~ 184 (429)
T PF02347_consen 109 LQALFEYQSMICELTGMDVAN--ASLYDGATAAAEAMLMAVRATK-RKRNKVLVPES-LHPQTRAVLRTYAAPLGIEIVE 184 (429)
T ss_dssp HHHHHHHHHHHHHHHTSSEE---SEBSSCCHHHHHHHHHHHHHHT-T---EEEEETT-S-CHHHHHHHHHCCHCCEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccC--CCCCChhHHHHHHHHHHHHhcc-cCCcEEEEcCC-cChhhHHHHHHhhhhCCeEEEE
Confidence 367888999999999986321 123356665 4444333322 22346766543 233333 345567778999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeecc---ccCCCCCcc
Q 002866 272 AWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAG---SLGPKDMDS 347 (872)
Q Consensus 272 Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAA---Q~aG~~mip 347 (872)
++.+.. +..+ . .++.-|.++.- |..|.+-+++. .+.+|++|.++++ ++ ++++.
T Consensus 185 ~~~~~~-~~~d--------~--------~~~a~v~vq~P-n~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l---- 241 (429)
T PF02347_consen 185 VPLDED-GTTD--------D--------DDTAAVMVQNP-NTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGL---- 241 (429)
T ss_dssp E-BBTT-CSB---------S--------TTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC----
T ss_pred eccccc-CCcc--------c--------cCeEEEEeecC-CCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCc----
Confidence 998753 3333 1 24666666544 68999999974 5678999999877 55 33332
Q ss_pred CCCCCCCCcEEEEccccc------CCCCCCceEEEEEeCCCccccc
Q 002866 348 LGLSLFRPDFIITSFYRV------FGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~------fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
-.-.++++|.++.+ ||- ||+ | |.|++-+|+.....|.
T Consensus 242 ~~Pge~GADI~vg~-~Q~fg~p~~~GG-P-~~G~~a~~~~l~r~lP 284 (429)
T PF02347_consen 242 KSPGEYGADIVVGE-HQTFGIPMGFGG-P-GAGFFAVREDLVRQLP 284 (429)
T ss_dssp --GGGGT-SEEEEC-CTTTT---CCC--S---EEEEE-GGGGGGS-
T ss_pred CChhhcCccEEeeC-CCCCcccCCCCC-C-CeeeEEEhhhhhhhCC
Confidence 22356899999666 775 445 3 7889999999776664
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.017 Score=65.71 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHH---HHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccC
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGS---AFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATe---ALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+.-+.+|++-.-+. .++|++.--. -+-+++.-+| |=+|++. +-.|.|+ .+++ ..|+.=.+ |..
T Consensus 220 ~LE~eLA~LHqK~a---ALlFsSCfVANDstLftLak~lp---gcei~SD-~gNHASMI~GIr----ns~v~K~I--FrH 286 (570)
T KOG1360|consen 220 RLEAELADLHQKEA---ALLFSSCFVANDSTLFTLAKKLP---GCEIFSD-EGNHASMIQGIR----NSRVPKHI--FRH 286 (570)
T ss_pred hHHHHHHHHhcCcc---eeeeeeeeeccchHHHHHHHHCC---CcEEecc-ccchHHHHHHhh----hcCCccee--ecc
Confidence 45556777755433 4888865432 2556676665 4455544 4456544 3443 33433222 333
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc--CCCC--
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS--LGLS-- 351 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip--LDLs-- 351 (872)
+ |+++|+++|.... ....++|+|-.+..++|.+-||+ ++..||++|+..+||-++++|.= -+ -.+.
T Consensus 287 N----D~~hL~~lL~~~~----~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlY-G~rGaGvger 357 (570)
T KOG1360|consen 287 N----DLDHLEQLLQSSP----KSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY-GPRGAGVGER 357 (570)
T ss_pred C----CHHHHHHHHHhCC----CCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc-cCCCCCcccc
Confidence 2 6789999887542 23579999999999999999998 56788999999999999887630 00 1111
Q ss_pred ---CCCCcEEEEcccccCCC
Q 002866 352 ---LFRPDFIITSFYRVFGF 368 (872)
Q Consensus 352 ---~l~~DFlv~S~HK~fG~ 368 (872)
...+|.++...-|-||-
T Consensus 358 dGvm~kvDiIsGTLgKafGc 377 (570)
T KOG1360|consen 358 DGVMHKVDIISGTLGKAFGC 377 (570)
T ss_pred CCcchhhhhcccchhhhccc
Confidence 13578888888888873
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.018 Score=65.93 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPE-NEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~-dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
+++..++.-.--.+++++ .+++|+.|.|.|.|+..+.+-+- ..|+.|++. +| +....++..+..|+++..|+.+
T Consensus 104 eLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie-~~---ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 104 ELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIE-EY---TYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred HHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEe-cc---cchHHHHhccccCceEEecccc
Confidence 444555553333445543 45689999999999999888763 678888875 22 2334455667789777777766
Q ss_pred CCCCccCHHHHHHHHhhhhcc-CCCC-CceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc
Q 002866 276 WPTLKLCSTDLRKQISSKKRR-KKDS-AAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr-~~~~-~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA 338 (872)
.+ -++++.|++.+...+-. .+.+ ..-|.++|.-.|.||.-++++ ++.+||+++++++-|-.
T Consensus 179 ~~--Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp 245 (472)
T KOG0634|consen 179 QD--GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP 245 (472)
T ss_pred CC--CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence 53 47899999988753211 1112 456999999999999999996 46789999999988754
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0018 Score=73.43 Aligned_cols=152 Identities=7% Similarity=-0.014 Sum_probs=98.3
Q ss_pred HHHHHHhcCCCCCCCcEEEeCCHHH-HHHHHHhhCCCCC-CCeEE-EecccCchhHHHHHHHHHHcCcEEEEEec--cCC
Q 002866 203 KTRIMDHLNIPENEYGLVFTVSRGS-AFKLLAESYPFHT-NKKLL-TMFDYESQSVNWMAQSAKEKGAKVYSAWF--KWP 277 (872)
Q Consensus 203 RerIA~lLgA~~dEY~VVFTsnATe-ALnLVaeslpf~~-Gd~IL-T~~DhEHnSVl~~~~~AkrkGaeV~~Vpv--d~p 277 (872)
=.-+.+.+|+..- ...+.++-||. ++.+...++.-++ ++.|+ ...||. .+.. .+...|.++..||. ..+
T Consensus 62 ~~d~~~~~G~~~~-~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqk-Sc~k----ai~~AGl~~~vV~~~~~~d 135 (389)
T PF05889_consen 62 VLDALRLAGLRSV-KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQK-SCFK----AIERAGLEPVVVENVLEGD 135 (389)
T ss_dssp HHHHHHHTTHTTH-CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETH-HHHH----HHHHTT-EEEEE-EEEETT
T ss_pred HHHHHHHcCCccc-cceEEEecccccHHHHHHHHHhcccCCceEEEeecccc-chHH----HHHhcCCeEEEeeccCCCC
Confidence 3345667888643 24666788876 4555555543123 44444 344543 3333 34556999988874 222
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc-HHHH-HHHHHCCcEEEeeccccC--------------
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS-YQWM-ALAQQNHWHVLLDAGSLG-------------- 341 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P-Le~I-~~Are~G~~VLVDAAQ~a-------------- 341 (872)
....+.+.+++.|... +....|.++++.+-+.|...| ++.| ++|+++|+..+|-.|=.+
T Consensus 136 ~l~td~~~ie~~i~~~-----G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~ 210 (389)
T PF05889_consen 136 ELITDLEAIEAKIEEL-----GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWR 210 (389)
T ss_dssp EEEEHHHHHHHHHHHH-----CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHh-----CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHh
Confidence 3445677788888543 235689999999999999999 8754 678999999999999777
Q ss_pred -CCCCccCCCCCCCCcEEEEcccccCC
Q 002866 342 -PKDMDSLGLSLFRPDFIITSFYRVFG 367 (872)
Q Consensus 342 -G~~mipLDLs~l~~DFlv~S~HK~fG 367 (872)
|. ++++++.++.||++-++||+..
T Consensus 211 ~GR--vda~vqS~dkNF~VPvGgai~A 235 (389)
T PF05889_consen 211 VGR--VDAFVQSTDKNFMVPVGGAIMA 235 (389)
T ss_dssp HST--CSEEEEEHHHHHCEESSHEEEE
T ss_pred cCC--cceeeeecCCCEEecCCCcEEE
Confidence 86 7889999999999999999643
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.12 Score=60.07 Aligned_cols=213 Identities=12% Similarity=0.038 Sum_probs=114.5
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +-..+.+++++.+. + ..+.....+ .+ .....+.-+++++++.... ..|.|
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~q-------l-~~l~~~~~~-~~--~~~~~~lAe~L~~~~p~~~--~~v~f 139 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQ-------L-AKQPLHSQE-LL--DPLRALLAKTLAALTPGKL--KYSFF 139 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHH-------H-HhCCCcccc-cC--CHHHHHHHHHHHHhCCCCc--CEEEE
Confidence 45789996544 33557777775431 1 111100111 11 1233455566666664322 25899
Q ss_pred eCCHHHHHHHHHh---hCCCCCCC-eEEEecccCchhHHHHHHHHH----HcC-----cEEEEEeccCCCCccCHHHHHH
Q 002866 222 TVSRGSAFKLLAE---SYPFHTNK-KLLTMFDYESQSVNWMAQSAK----EKG-----AKVYSAWFKWPTLKLCSTDLRK 288 (872)
Q Consensus 222 TsnATeALnLVae---slpf~~Gd-~ILT~~DhEHnSVl~~~~~Ak----rkG-----aeV~~Vpvd~p~g~Id~edLe~ 288 (872)
+.++|||+..... .+.-..|. .|++...--|....+...... +.+ ..+..+|+. +.+.+++
T Consensus 140 ~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~------d~~~~~~ 213 (442)
T TIGR03372 140 CNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG------DIEAMLK 213 (442)
T ss_pred eCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC------CHHHHHH
Confidence 9999998665433 33111343 465543322443332221100 011 112333332 3466666
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEE
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIIT 360 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~ 360 (872)
.|....+ ...+...|.+.-+...-|.+.| ++. .+.|+++|+.+++|=+|. .|.. +.-.......||+++
T Consensus 214 ~l~~~~~--~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt- 290 (442)
T TIGR03372 214 ALNECKK--TGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC- 290 (442)
T ss_pred HHHHHhc--CCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee-
Confidence 6643111 1234677777777777899998 664 456799999999999985 3320 001112234699877
Q ss_pred cccccCCCCCCc---eEEEEEeCCCcccc
Q 002866 361 SFYRVFGFDPTG---FGCLLIKKSVMGSL 386 (872)
Q Consensus 361 S~HK~fG~~PtG---vG~LyVRk~~i~~L 386 (872)
+=|-+|. | +|+++.++++.+.+
T Consensus 291 -~gK~lg~---G~~Pigavv~~~~i~~~~ 315 (442)
T TIGR03372 291 -LAKALGG---GVMPIGATIATEAVFSVL 315 (442)
T ss_pred -ehhhhcC---CcccceEEEecHHHHHhh
Confidence 5687663 4 78888888876655
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.25 Score=57.22 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHc--C--cEEE
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEK--G--AKVY 270 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krk--G--aeV~ 270 (872)
+.=+++++++...-+ .|.|+.++|||+.....- ..+.....|++...--|.......... .+. | ..+.
T Consensus 88 ~la~~L~~~~p~~~~--~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~ 165 (443)
T PRK08360 88 LLAEKLIEIAPGDNP--KVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVH 165 (443)
T ss_pred HHHHHHHHhCCCCCC--EEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcE
Confidence 333456666654322 599999999986654331 112223346654332244322211110 000 1 1234
Q ss_pred EEeccCCC-Cc----------cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEE
Q 002866 271 SAWFKWPT-LK----------LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVL 334 (872)
Q Consensus 271 ~Vpvd~p~-g~----------Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VL 334 (872)
++|..... .. -+.+.+++.|... ....++..|.+.-+.|.+|.+.| ++. .+.|+++|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 242 (443)
T PRK08360 166 YIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE---VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLV 242 (443)
T ss_pred EEeCCccccccccCchhhhHHHHHHHHHHHHHhc---cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 44432110 00 0123344445321 01235777777778889999988 333 456789999999
Q ss_pred eecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 335 LDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 335 VDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+|=++. .|.. +.....-.+.+|++++ =|-+|. | +|++..++++++.+.
T Consensus 243 ~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~---G~pigav~~~~~i~~~~~ 295 (443)
T PRK08360 243 VDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGG---GLPISATIGRAEIMDSLP 295 (443)
T ss_pred EeccccCCCcCccchhhhhcCCCCCEEEe--cccccC---CceeEEEEEcHHHHhhhc
Confidence 999975 3321 1111222356897755 788773 4 899998888776664
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=60.06 Aligned_cols=213 Identities=12% Similarity=0.056 Sum_probs=113.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +-..+.+++++.+. + ..+. .+..........+.-+++++++....+ .|.|
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q-------l-~~l~---~~~~~~~~~~~~~lae~L~~~~p~~~~--~v~f 146 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQ-------L-AKQP---LHSQELLDPLRAMLAKTLAALTPGKLK--YSFF 146 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHH-------H-hhCc---ccccccCCHHHHHHHHHHHHhCCCCCC--EEEE
Confidence 34789997544 33456777775431 1 1111 111111112334555666776543222 5999
Q ss_pred eCCHHHHHHHHHh---hCCCCCCC-eEEEecccCchhHHHHHHHHHHcCc---------EEEEEeccCCCCccCHHHHHH
Q 002866 222 TVSRGSAFKLLAE---SYPFHTNK-KLLTMFDYESQSVNWMAQSAKEKGA---------KVYSAWFKWPTLKLCSTDLRK 288 (872)
Q Consensus 222 TsnATeALnLVae---slpf~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGa---------eV~~Vpvd~p~g~Id~edLe~ 288 (872)
+.++|||+..... .+.-++|+ .||+...--|....+.......... .+..+|. + +.+++++
T Consensus 147 ~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~--~----d~~~l~~ 220 (459)
T PRK11522 147 CNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF--G----NIEAMRT 220 (459)
T ss_pred eCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC--C----CHHHHHH
Confidence 9999998665433 33222333 4555432223332222111000000 0112221 1 4577777
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEE
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIIT 360 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~ 360 (872)
+|....+ ...+...|.+-.+....|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-.......||.+++
T Consensus 221 ~l~~~~~--~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~ 298 (459)
T PRK11522 221 ALSECKK--TGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCL 298 (459)
T ss_pred HHHHhhc--cCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEe
Confidence 7753211 1234667777777778899998 6644 56799999999999985 2210 0011222346898754
Q ss_pred cccccCCCCCCc---eEEEEEeCCCcccc
Q 002866 361 SFYRVFGFDPTG---FGCLLIKKSVMGSL 386 (872)
Q Consensus 361 S~HK~fG~~PtG---vG~LyVRk~~i~~L 386 (872)
=|-+|+ | +|+++++++..+.+
T Consensus 299 --gK~lgg---G~~Pigav~~~~~i~~~~ 322 (459)
T PRK11522 299 --AKALGG---GVMPIGATIATEEVFSVL 322 (459)
T ss_pred --chhhhC---CCccceeEEEcHHHHHHh
Confidence 687774 4 79999988766544
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.22 Score=57.69 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=56.1
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+...|.+-.+....|.+.| ++.+ +.|+++|+.+++|=+|. .|.. +.....-.+.||.++++ |.+|+ -..
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~-G~p 297 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAG-GLP 297 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccC-Ccc
Confidence 5778888888888999999 7644 56799999999999976 3321 00111112468999876 87664 123
Q ss_pred eEEEEEeCCCcc
Q 002866 373 FGCLLIKKSVMG 384 (872)
Q Consensus 373 vG~LyVRk~~i~ 384 (872)
+|+++.++++..
T Consensus 298 ~gav~~~~~i~~ 309 (441)
T PRK05769 298 LGAVIGRAELMF 309 (441)
T ss_pred cEEEEEehhhhh
Confidence 888888888764
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.11 Score=59.74 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCC--CCeEEEecccCchh-HHHHHHHHHHcCcEEEEEe
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHT--NKKLLTMFDYESQS-VNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~--Gd~ILT~~DhEHnS-Vl~~~~~AkrkGaeV~~Vp 273 (872)
+.+-+=..-|+++.|.+-.. --.--.+|.+-.-+.-++...+ .+++++.-+ -|+. +.-++.+|+-.|++|...+
T Consensus 120 qaLfefQtlv~dLTGm~VAN--ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~-vhpqt~~Vl~Tra~~~g~~i~~~~ 196 (450)
T COG0403 120 EALFEFQTLVADLTGLDVAN--ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKD-VHPQTLDVLRTRAEGLGIEIEVVD 196 (450)
T ss_pred HHHHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHhhcCcCceEEecCC-CCHHHHHHHHhhcccCceEEEEec
Confidence 56667788999999986432 1222455655444333333333 355666643 3444 3445677777788888766
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCccc-chhcHH-HHHHHHHCCcEEEe--eccccCCCCCccCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTG-AKYSYQ-WMALAQQNHWHVLL--DAGSLGPKDMDSLG 349 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG-~i~PLe-~I~~Are~G~~VLV--DAAQ~aG~~mipLD 349 (872)
.+ +.++|++. .. ..+--+.+.+- |..| ...++. ++..+|++|++|+| |-.++.=. -.
T Consensus 197 ~~------d~~~l~~~-~~-------~~~~gv~vQyP-~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL----~p 257 (450)
T COG0403 197 AD------DLDDLESA-DD-------GDVFGVLVQYP-NTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLL----KP 257 (450)
T ss_pred cc------hhhhhhhc-cc-------cCeEEEEEecC-CCCCccchhHHHHHHHHhhcCCEEEEEechhHhhcc----CC
Confidence 43 34555544 21 23444444433 5788 666697 56788999998776 33333211 11
Q ss_pred CCCCCCcEEEEccccc-----CCCCCCceEEEEEeCCCcccc
Q 002866 350 LSLFRPDFIITSFYRV-----FGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~-----fG~~PtGvG~LyVRk~~i~~L 386 (872)
--++++|.++.+.+-+ ||+ | .+|++-+|++....+
T Consensus 258 PGe~GADIvvG~~QrfGvPmgfGG-P-hag~fA~~~~~~R~m 297 (450)
T COG0403 258 PGEFGADIVVGSAQRFGVPMGFGG-P-HAGYFAVKDEFKRQM 297 (450)
T ss_pred ccccCCceEEecCcccCCCcCCCC-c-ceeeeeEhHhHhhcC
Confidence 2468999999999995 665 3 577899998875444
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.096 Score=59.80 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH--HHHHhh---------CCCCCCCe--EEEecccCchhHHHHHHHHH
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF--KLLAES---------YPFHTNKK--LLTMFDYESQSVNWMAQSAK 263 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL--nLVaes---------lpf~~Gd~--ILT~~DhEHnSVl~~~~~Ak 263 (872)
+-+-++|+-.|++||+++++ |+...|.+=.+ .+|..+ -||...+. +|.+. +-...=...++
T Consensus 69 ~Gipe~r~l~a~llgv~~~~--viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv----PGYDRHFai~E 142 (425)
T PF12897_consen 69 DGIPEARELFAELLGVPPEN--VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV----PGYDRHFAITE 142 (425)
T ss_dssp S--HHHHHHHHHHHTS-GGG--EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE----S--HHHHHHHH
T ss_pred CChHHHHHHHHHHhCCCHHH--EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC----CCchHHHHHHH
Confidence 35678999999999999875 66555543321 123222 36754433 45431 11111123467
Q ss_pred HcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHH-H----HHCCcEEEeecc
Q 002866 264 EKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMAL-A----QQNHWHVLLDAG 338 (872)
Q Consensus 264 rkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~-A----re~G~~VLVDAA 338 (872)
..|++...||.... | -|++.+++++... ..-.++.++|.-||.||+.|+=+.++. | ...+..++.|=|
T Consensus 143 ~~Giemi~VpM~~d-G-PDmD~Ve~LV~~D-----~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA 215 (425)
T PF12897_consen 143 HFGIEMIPVPMTED-G-PDMDMVEELVAED-----PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA 215 (425)
T ss_dssp HCT-EEEEEEEETT-E-E-HHHHHHHTHTS-----TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred hhCcEEEecCCCCC-C-CCHHHHHHHHhcC-----CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence 78999999999763 3 4889999988642 223689999999999999999887654 3 256888999988
Q ss_pred ccCCC
Q 002866 339 SLGPK 343 (872)
Q Consensus 339 Q~aG~ 343 (872)
=++.+
T Consensus 216 Y~vHh 220 (425)
T PF12897_consen 216 YAVHH 220 (425)
T ss_dssp TTT-B
T ss_pred ceEee
Confidence 65554
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.12 Score=59.67 Aligned_cols=211 Identities=13% Similarity=0.134 Sum_probs=113.6
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|..+. +--.+.+.+++.+ -...+ ..++-++ ....+.=+++.+++.... ..|.|
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~--------q~~~~---~~~~~~~--~~~~~la~~L~~~~~~~~--~~v~f 115 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQ--------GAERG---TSYGLTS--EQEILFAEELFSYLGLED--HKIRF 115 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHH--------HHHhC---CCCCCCC--HHHHHHHHHHHHhCCCCc--CEEEE
Confidence 45789998554 3345677776533 11111 1222222 223344455666664322 26999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCC-eEEEecccCchhHHHHHHHHHHcCc------EE--------EEEeccCCCCccCHHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNK-KLLTMFDYESQSVNWMAQSAKEKGA------KV--------YSAWFKWPTLKLCSTD 285 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGa------eV--------~~Vpvd~p~g~Id~ed 285 (872)
+.++|||+.....- ..+ .|+ +|++....-|....+......-.+- .+ ..+.+.. -+.++
T Consensus 116 ~~SGsEA~e~AiklAr~~-tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~ 190 (433)
T PRK00615 116 VSSGTEATMTAVRLARGI-TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY----NDFQI 190 (433)
T ss_pred eCchHHHHHHHHHHHHHh-hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC----CCHHH
Confidence 99999987654432 122 344 4665433224322110000000000 00 0011111 14677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----H-HHHHHHCCcEEEeeccccC---CCCCccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----W-MALAQQNHWHVLLDAGSLG---PKDMDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~-I~~Are~G~~VLVDAAQ~a---G~~mipLDLs~l~~DF 357 (872)
+++.|... ..+...|.+..+-...|.+.|.. . ...|+++|+++++|=+|.+ |. +.-...-...||+
T Consensus 191 l~~~l~~~-----~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~-~ga~~~~gv~PDi 264 (433)
T PRK00615 191 FQTVMNSL-----GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ-GGAAAIYHVKPDI 264 (433)
T ss_pred HHHHHHhc-----CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH-hHHHHhcCCCCCe
Confidence 88877532 13467888888878889988853 3 3567899999999999842 21 1111122347998
Q ss_pred EEEcccccCCCC-CCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFD-PTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~-PtGvG~LyVRk~~i~~L~P 388 (872)
++ +=|.+|+. | +|++..++++++.+.+
T Consensus 265 ~~--~gK~lggG~p--~~av~~~~~i~~~~~~ 292 (433)
T PRK00615 265 TV--YGKILGGGLP--AAAVVAHKSIMDHLAP 292 (433)
T ss_pred EE--EcccccCCcc--eeeeeecHHHHhhhcC
Confidence 76 46877630 2 7888889988877754
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.22 Score=57.91 Aligned_cols=218 Identities=12% Similarity=0.051 Sum_probs=114.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +--.+.+++++.+ -...+. +......+ ....+.=++|++++...-+ .|.|
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~--------q~~~~~-~~~~~~~~--~~~~~lae~L~~~~p~~~~--~v~f 117 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQE--------QAARLC-TVAPAHAN--DARSEAARLIAERAPGDLS--KVFF 117 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHH--------HHHhcC-CcCCccCC--HHHHHHHHHHHHhCCCCCC--EEEE
Confidence 45789998653 3345677777543 111111 11111111 2233444566666543222 6999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH---HcC-----cEEEEEeccCCC-Ccc----C-----
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK---EKG-----AKVYSAWFKWPT-LKL----C----- 282 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak---rkG-----aeV~~Vpvd~p~-g~I----d----- 282 (872)
+.++|||......- ..+....+||+....-|....+...... ... ..+..++...+. ... +
T Consensus 118 ~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 197 (451)
T PRK06062 118 TNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECE 197 (451)
T ss_pred cCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHH
Confidence 99999987764442 1222234566553322443332221100 000 012222221110 000 1
Q ss_pred --HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCC
Q 002866 283 --STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSL 352 (872)
Q Consensus 283 --~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~ 352 (872)
.++|+++|... ...+...|.+--+...-|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-.+.-.
T Consensus 198 ~~~~~le~~l~~~----~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~g 273 (451)
T PRK06062 198 RALAHLERVIELE----GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273 (451)
T ss_pred HHHHHHHHHHHhc----CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcC
Confidence 45566666421 1134566666667777899998 6654 56799999999999976 3320 10112223
Q ss_pred CCCcEEEEcccccCCCCCCc---eEEEEEeCCCccccc
Q 002866 353 FRPDFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~ 387 (872)
+.||++++ =|-+|+ | +|+++.++++++.+.
T Consensus 274 v~PDi~t~--gK~lgg---G~~Pigav~~~~~i~~~~~ 306 (451)
T PRK06062 274 VVPDLITF--AKGVNS---GYVPLGGVAISEAIAATFA 306 (451)
T ss_pred CCCCeeee--chhhhc---CCcCcEEEEEcHHHHHHhc
Confidence 57997765 587664 4 789999988776664
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.21 Score=57.67 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=55.0
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
++..|.+.-+....|.+.| ++.+ +.|+++|+.+++|=+|. .|.. +.-...-...||.++++ |-+|+ |
T Consensus 219 ~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~~---G 293 (443)
T PRK06058 219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIAG---G 293 (443)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--ccccC---C
Confidence 4666667667667788876 4433 46789999999999975 2210 11112223578999986 97663 4
Q ss_pred --eEEEEEeCCCccccc
Q 002866 373 --FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 --vG~LyVRk~~i~~L~ 387 (872)
+|+++.++++++.+.
T Consensus 294 ~Pi~av~~~~~i~~~~~ 310 (443)
T PRK06058 294 LPLSAVTGRAEIMDAPH 310 (443)
T ss_pred CccEEEEEcHHHHhhcc
Confidence 889998888766554
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=58.80 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=118.0
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHH-hcCCCC---CCCcE--EEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMD-HLNIPE---NEYGL--VFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~-lLgA~~---dEY~V--VFTs 223 (872)
-+|-|-.+-+|.-+.|.+|.. .+.....+ ..|-+.. -+..-++.+++ +||.+. .+..| |=|.
T Consensus 34 GvY~de~Gk~pvl~aV~~Ae~--------~l~~~~~~-k~Yl~i~---G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~ 101 (396)
T COG1448 34 GVYKDEDGKTPVLRAVKKAEK--------RLLEQEKT-KNYLPIE---GLPEFLEAVQKLLFGADSPALAEDRVATVQTL 101 (396)
T ss_pred eeeeCCCCCcchhHHHHHHHH--------Hhhccccc-cccCCcC---CcHHHHHHHHHHhcCCCcHHHHhhhHhheecC
Confidence 489999999998888877632 11111111 1122221 12233444444 456441 11123 3468
Q ss_pred CHHHHHHHHHhhCC-CCCCCeEEEec-c-cCchhHHHHHHHHHHcCcEEEEEe-ccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 224 SRGSAFKLLAESYP-FHTNKKLLTMF-D-YESQSVNWMAQSAKEKGAKVYSAW-FKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 224 nATeALnLVaeslp-f~~Gd~ILT~~-D-hEHnSVl~~~~~AkrkGaeV~~Vp-vd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|.||++.++-+. +.+...|.++. . -.|..+ -+..|.+|..-| +|..+..++.+.+...|...
T Consensus 102 GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I------f~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a------ 169 (396)
T COG1448 102 GGTGALRVAADFLARFFPDATVWISDPTWPNHKAI------FEAAGLEVETYPYYDAETKGLDFDGMLADLKTA------ 169 (396)
T ss_pred CcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH------HHhcCCceeeeeccccccccccHHHHHHHHHhC------
Confidence 99999999988764 22333444331 1 123322 245799996544 45555668888887777642
Q ss_pred CCceEEEEeC-ccCcccchhcHH-HHHH---HHHCCcEEEeecc-ccCCCCCccCCCCC---------CCCcEEEEcccc
Q 002866 300 SAAGLFVFPV-QSRVTGAKYSYQ-WMAL---AQQNHWHVLLDAG-SLGPKDMDSLGLSL---------FRPDFIITSFYR 364 (872)
Q Consensus 300 ~~T~LVa~p~-vSNvTG~i~PLe-~I~~---Are~G~~VLVDAA-Q~aG~~mipLDLs~---------l~~DFlv~S~HK 364 (872)
+...+|.+-. ++|.||.-...+ |... .+++++..++|-| |..+.. ++-.. ...=|++.||-|
T Consensus 170 ~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G---leeDa~~lR~~a~~~~~~lva~S~SK 246 (396)
T COG1448 170 PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG---LEEDAYALRLFAEVGPELLVASSFSK 246 (396)
T ss_pred CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc---hHHHHHHHHHHHHhCCcEEEEehhhh
Confidence 2233444433 359999999985 7544 4899999999999 766642 33221 223578889999
Q ss_pred cCC-CCCCceEEEEEe
Q 002866 365 VFG-FDPTGFGCLLIK 379 (872)
Q Consensus 365 ~fG-~~PtGvG~LyVR 379 (872)
-|| | =.-+|++.+-
T Consensus 247 nfgLY-gERVGa~~vv 261 (396)
T COG1448 247 NFGLY-GERVGALSVV 261 (396)
T ss_pred hhhhh-hhccceeEEE
Confidence 877 3 2347776553
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.18 Score=57.85 Aligned_cols=219 Identities=11% Similarity=0.019 Sum_probs=114.3
Q ss_pred CCceecccCCCC------CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGFG------LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtg------p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|..+.- --.+.+.+++.+. + ..+. +...+.. ......+.-+++++++.-. ...|.|
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q-------~-~~~~-~~~~~~~-~~~~~~~la~~L~~~~~~~--~~~v~f 108 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQ-------A-DKLM-HGPSGVI-YYESILKLAEELAEITPGG--LDCFFF 108 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHH-------H-Hhcc-Ccccccc-CCHHHHHHHHHHHHhCCCC--CCEEEE
Confidence 457799976542 2456677765431 1 1111 0010001 1233456667788887322 226999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHcC-----cEEEEEeccCCC----C----c--
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEKG-----AKVYSAWFKWPT----L----K-- 280 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krkG-----aeV~~Vpvd~p~----g----~-- 280 (872)
+.++++|+...+.. ..+....+|++....-|.......... .+.+ ..+..+|+.... . .
T Consensus 109 ~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (433)
T PRK08117 109 SNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCF 188 (433)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHH
Confidence 99999986654442 112222456654432255443321110 0011 112334432110 0 0
Q ss_pred -cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccC-CCC--CccCCCC
Q 002866 281 -LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLG-PKD--MDSLGLS 351 (872)
Q Consensus 281 -Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~a-G~~--mipLDLs 351 (872)
-+.+++++++.... ...+...|.+--+....|.+.| ++. .+.|+++|+++++|=+|.. |.. +....--
T Consensus 189 ~~~~~~l~~~~~~~~---~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~ 265 (433)
T PRK08117 189 LECLRDLESLFKHQV---TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTF 265 (433)
T ss_pred HHHHHHHHHHHHhcc---CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhc
Confidence 13345555554210 1235778888778888899998 764 4678999999999999762 110 0011111
Q ss_pred CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSL 386 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L 386 (872)
...||+ .++=|.+|. | +|++..+++.++.+
T Consensus 266 gv~pDi--~t~sK~lg~---G~pigav~~~~~i~~~~ 297 (433)
T PRK08117 266 GVVPDI--MTIAKGIAS---GLPLSAVVASKELMEQW 297 (433)
T ss_pred CCCCCE--eehhhhccC---CCcceeEEEcHHHHhhc
Confidence 235786 466788773 4 78888887766544
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.35 Score=55.66 Aligned_cols=208 Identities=15% Similarity=0.128 Sum_probs=113.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+. +--.+.+.+++.+ .+.....++.++ ....+.-+++.+++.. .+ .|.|
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~-----------q~~~~~~~~~~~--~~~~~la~~l~~~~p~-~~--~v~f 114 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITE-----------AAENGVLYGTPT--ELEIEFAKMLKEAIPS-LE--KVRF 114 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHH-----------HHHhCCccCCCC--HHHHHHHHHHHHhCCC-Cc--EEEE
Confidence 45789997433 2234666666433 111111233333 2233455556665531 22 6999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHHH----------cCc------EEEEEeccCCCCccCHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAKE----------KGA------KVYSAWFKWPTLKLCST 284 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Akr----------kGa------eV~~Vpvd~p~g~Id~e 284 (872)
+.++|||+.....- ..+....+||+....-|....+....... .|+ .+..+| .+ +.+
T Consensus 115 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----d~~ 188 (428)
T PRK12389 115 VNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP--FN----DIE 188 (428)
T ss_pred eCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC--CC----CHH
Confidence 99999987764442 22322345665433234433332211100 011 111111 11 467
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccCCCCCcc--CCCCCCCCcE
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLGPKDMDS--LGLSLFRPDF 357 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~aG~~mip--LDLs~l~~DF 357 (872)
.+++.|... ..+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.+-....- ...-...||+
T Consensus 189 ~l~~~l~~~-----~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDi 263 (428)
T PRK12389 189 ALKEALDKW-----GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDL 263 (428)
T ss_pred HHHHHHHhc-----CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCe
Confidence 788777532 124667777777777899998 6644 567999999999999875320000 1112347998
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++ =|.+|+ | +|++..++++++.+.
T Consensus 264 vt~--gK~lgg---G~Pi~av~~~~~i~~~~~ 290 (428)
T PRK12389 264 TAL--GKIIGG---GLPIGAYGGRKDIMEQVA 290 (428)
T ss_pred eee--chhhcC---CCceeEEeEHHHHHhhhc
Confidence 654 576553 3 788888988877664
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.075 Score=66.60 Aligned_cols=215 Identities=13% Similarity=0.099 Sum_probs=120.2
Q ss_pred CCCchhHHHHHhhcccCCCCceecccCCCCCCc---HHHH-HHhhhcccccHHHHHHhhccCcCcC---CCchHHHHHHH
Q 002866 130 YQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFS---YIQT-LHYWESSTFSLSEITANLSNHALYG---GAEKGTVEHDI 202 (872)
Q Consensus 130 y~~t~~ID~lR~~EFP~L~~~IYLDyAAtgp~p---~~Vi-eA~~e~~~F~ls~i~~nL~~~~~yg---NpsS~~~ieeA 202 (872)
..+.+.+..+++ ... ++.+|-.+-|.+-++ +.|+ +.+.+.|.| ++. +..|- .....+.+-+-
T Consensus 61 ~sE~e~~~~~~~--~a~-kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~----yTa----YTPYQpEisQG~Lqal~e~ 129 (954)
T PRK12566 61 LDEQAALARLRG--YAE-QNQVWTSLIGMGYHGTVTPTVILRNVLENPGW----YTA----YTPYQPEIAQGRLEALLNF 129 (954)
T ss_pred CCHHHHHHHHHH--HHh-cCCCccccccccccCCcCcHHHHHHHHhCchh----hhc----CCCCCchhhhHHHHHHHHH
Confidence 444445555554 111 233455555555433 3555 665554444 221 12232 11123677778
Q ss_pred HHHHHHhcCCCCCCCcEEEeCCHH---HHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCC
Q 002866 203 KTRIMDHLNIPENEYGLVFTVSRG---SAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 203 RerIA~lLgA~~dEY~VVFTsnAT---eALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
..-|+++.|.+-..-++ -.++| ||+.+... +.-.+..+++++.. -|+... -++.+++..|++|+.
T Consensus 130 Qtmi~~LtGm~vaNASl--~D~atA~aEA~~ma~~-~~~~k~~~~~v~~~-~hP~~~~v~~t~~~~~g~~i~~------- 198 (954)
T PRK12566 130 QQMTIDLTGLDLANASL--LDEATAAAEAMALAKR-VAKSKSNRFFVDEH-CHPQTLSVLRTRAEGFGFELVV------- 198 (954)
T ss_pred HHHHHHHhCchhhhhhh--ccchhHHHHHHHHHHH-HhhcCCCEEEECCC-CCHHHHHHHHHhhhcCCcEEEE-------
Confidence 88999999876321111 23444 45555332 21112345666533 344433 345667778888874
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCcc-CcccchhcHH-HHHHHHHCCcEEEeecc---ccCCCCCccCCCCCC
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS-RVTGAKYSYQ-WMALAQQNHWHVLLDAG---SLGPKDMDSLGLSLF 353 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS-NvTG~i~PLe-~I~~Are~G~~VLVDAA---Q~aG~~mipLDLs~l 353 (872)
++++.++. ..++++..++ |..|.+.+++ +++.+|++|++++ +++ +++.. -.-.++
T Consensus 199 -----~~~~~~~~----------~~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll----~~Pge~ 258 (954)
T PRK12566 199 -----DAVDNLAA----------HAVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVL----TPPGEL 258 (954)
T ss_pred -----cchhhcCC----------CCEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCC----CChhhc
Confidence 22333221 1255555555 8999999997 4578899999855 444 33322 112568
Q ss_pred CCcEEEEccccc-----CCCCCCceEEEEEeCCCcccccC
Q 002866 354 RPDFIITSFYRV-----FGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 354 ~~DFlv~S~HK~-----fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++|.++.++.-+ ||+ | +.|++-+|+.....+.-
T Consensus 259 GADI~vG~~Q~fGvp~~~GG-P-~ag~~a~~~~~~R~~PG 296 (954)
T PRK12566 259 GADVVLGSTQRFGVPMGYGG-P-HAAYFACRDDYKRAMPG 296 (954)
T ss_pred CCcEEeeCCCcCCCCCCCCC-C-CeeeeeehHHHHhhCCC
Confidence 999999888764 777 4 79999999987666653
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.29 Score=57.48 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=112.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|+.+. +--.+.+.+++.+ .+.....++.++. ...+.=++|.+.+.. .+ .|.|
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~-----------ql~~~~~~~~~~~--~~~~lAe~l~~~~p~-~~--~v~f 160 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAE-----------TMKKGTSFGAPCL--LENVLAEMVIDAVPS-VE--MVRF 160 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHH-----------HHhhCCCCCCCCH--HHHHHHHHHHHhCCC-CC--EEEE
Confidence 45789998543 2234667776543 1111123444442 222333445555532 12 6999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH----------HcCc------EEEEEeccCCCCccCHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK----------EKGA------KVYSAWFKWPTLKLCST 284 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak----------rkGa------eV~~Vpvd~p~g~Id~e 284 (872)
+.++|||......- ..+....+|+.....-|....++..... ..|+ .+..+| ++ +.+
T Consensus 161 ~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~n----d~~ 234 (474)
T PLN02482 161 VNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP--YN----DLE 234 (474)
T ss_pred eCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec--CC----ChH
Confidence 99999987654432 1122234566543322442211110000 0011 111122 21 467
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-----HHHHHHHCCcEEEeeccccCCCCCcc-C---CCCCCCC
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-----WMALAQQNHWHVLLDAGSLGPKDMDS-L---GLSLFRP 355 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-----~I~~Are~G~~VLVDAAQ~aG~~mip-L---DLs~l~~ 355 (872)
.+++.|..+ ......|.+-.+-...|.+.|.. ..+.|+++|+.+++|=+|. |.. .. . ..-...|
T Consensus 235 ~l~~~l~~~-----~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR-~g~~ga~~~~gv~P 307 (474)
T PLN02482 235 AVKKLFEAN-----KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFR-IAYGGAQEYFGITP 307 (474)
T ss_pred HHHHHHHhC-----CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cee-cCcchHhHHhCCCC
Confidence 788877532 13467777877878889988853 2356789999999999984 311 11 0 1112368
Q ss_pred cEEEEcccccCCCC-CCceEEEEEeCCCcccccC
Q 002866 356 DFIITSFYRVFGFD-PTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 356 DFlv~S~HK~fG~~-PtGvG~LyVRk~~i~~L~P 388 (872)
|.+++ =|.+|+. | +|++..++++++.+.+
T Consensus 308 Di~t~--gK~lggG~P--igav~g~~ei~~~~~~ 337 (474)
T PLN02482 308 DLTTL--GKVIGGGLP--VGAYGGRREIMEMVAP 337 (474)
T ss_pred CEEEe--cchhhCCCc--eEEEEEcHHHHHhhcc
Confidence 98655 6876630 2 7999999988877653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.35 Score=56.03 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=114.3
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +--.+.+++++.+. + ..+.....++.++ ....++-+++++++....+ .|.|
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q-------l-~~l~~~~~~~~~~--~~~~~la~~l~~~~p~~~~--~v~f 111 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQ-------A-GELDYAPAFQMGH--PKAFELANRIAEIAPGGLN--HVFF 111 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHH-------H-HhCCCcccCCcCC--HHHHHHHHHHHHhCCCCCC--EEEE
Confidence 45789998544 45556777765331 1 1111001111222 2234555667777642222 5999
Q ss_pred eCCHHHHHHHHHh---hCC---CCCC-CeEEEecccCchhHHHHHHH----HHHc--C---cEEEEEeccCC--CCcc--
Q 002866 222 TVSRGSAFKLLAE---SYP---FHTN-KKLLTMFDYESQSVNWMAQS----AKEK--G---AKVYSAWFKWP--TLKL-- 281 (872)
Q Consensus 222 TsnATeALnLVae---slp---f~~G-d~ILT~~DhEHnSVl~~~~~----Akrk--G---aeV~~Vpvd~p--~g~I-- 281 (872)
+.++|||+..... .+. -+++ .+||+...--|......... ..+. + ..+..+|.... ...+
T Consensus 112 ~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 191 (442)
T PRK13360 112 TNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSK 191 (442)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCC
Confidence 9999997665433 221 0122 35665433223322111100 0111 1 12333443210 0000
Q ss_pred --------CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--C
Q 002866 282 --------CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 282 --------d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
..++|+++|... ...+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|. .|.. +
T Consensus 192 ~~~~~~~~~~~~le~~l~~~----~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 267 (442)
T PRK13360 192 GQPEHGAELADELERLVTLH----DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAP 267 (442)
T ss_pred ChHHHHHHHHHHHHHHHHhc----CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 134666666421 1235678888888888999999 7654 56799999999999983 3320 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCcccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTG---FGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L 386 (872)
.-.......||++++ =|.+|+ | +|++.+++++.+.+
T Consensus 268 ~a~~~~gv~PDivt~--gK~l~g---G~~P~gav~~~~~i~~~~ 306 (442)
T PRK13360 268 FAAQYFGVTPDLLTC--AKGLTN---GAIPMGAVFVSSEIHDAF 306 (442)
T ss_pred hhhhhcCCCCceeee--eecccc---CccceEEEEEcHHHHHHh
Confidence 112223356898755 687653 3 78888887776544
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.31 Score=56.47 Aligned_cols=213 Identities=14% Similarity=0.088 Sum_probs=125.5
Q ss_pred CCceecccCCC-CC-----CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF-GL-----FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt-gp-----~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|.||+.. +| -++.|.+|+.+ .+.....||.|...+ ++-| +.|.+.+..-+ -|=|
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~-----------~l~~G~~fg~Pte~E-i~~A-ell~~~~p~~e---~vrf 114 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQE-----------QLERGLSFGAPTELE-VELA-ELLIERVPSIE---KVRF 114 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHH-----------HHHhcCCCCCCCHHH-HHHH-HHHHHhcCccc---EEEE
Confidence 45778898754 33 34667776533 222345789997432 2323 66777766532 4999
Q ss_pred eCCHHHHHHHH---HhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCc-----------------EEEEEeccCCCCcc
Q 002866 222 TVSRGSAFKLL---AESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA-----------------KVYSAWFKWPTLKL 281 (872)
Q Consensus 222 TsnATeALnLV---aeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa-----------------eV~~Vpvd~p~g~I 281 (872)
++++|||.... |++|. ..++|+-...+-|....+++..+. .|+ .+..+|++
T Consensus 115 vnSGTEAtmsAiRlARa~T--gR~kIikF~G~YHG~~D~~lv~ag-sg~~t~g~p~s~Gvp~~~a~~ti~~~yN------ 185 (432)
T COG0001 115 VNSGTEATMSAIRLARAYT--GRDKIIKFEGCYHGHSDSLLVKAG-SGAATLGSPSSPGVPADVAKHTLVLPYN------ 185 (432)
T ss_pred ecchhHHHHHHHHHHHHhh--CCCeEEEEcCCCCCCccHHHhhcC-cCcccCCCCCCCCCChhhhccEEEecCC------
Confidence 99999997764 44553 334555433334555555543221 121 22333332
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HH-HHHHHCCcEEEeecccc------CCCCCccCCC
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WM-ALAQQNHWHVLLDAGSL------GPKDMDSLGL 350 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I-~~Are~G~~VLVDAAQ~------aG~~mipLDL 350 (872)
|.+.+++++..+ ..+..-|.+--+-.-.|.+.|-+ .+ ++++++|+.+++|=+-. .|. -+.
T Consensus 186 D~~al~~~~~~~-----g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGa----q~~ 256 (432)
T COG0001 186 DLEALEEAFEEY-----GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGA----QGY 256 (432)
T ss_pred CHHHHHHHHHHc-----CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccc----ccc
Confidence 578888888753 12344444444444478888864 23 45689999999998743 221 112
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCCCCCCCCCe
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQSGQTGSGM 397 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~~~~~GgGt 397 (872)
-.+.||+.++ =|+.|+ =-=+|++-.|++.++.+.|.-..+..||
T Consensus 257 ~gi~PDlttl--GKiIGG-GlP~ga~gGr~eiM~~~~p~g~vyqaGT 300 (432)
T COG0001 257 YGVEPDLTTL--GKIIGG-GLPIGAFGGRAEIMEQLAPLGPVYQAGT 300 (432)
T ss_pred cCcCcchhhh--hhhhcC-CcceeeeccHHHHHhhhCCCCCccccCC
Confidence 2346888664 588664 1228999999999998877643334444
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.21 Score=57.96 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCC--CCccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPK--DMDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~--~mipLDLs~l~~ 355 (872)
+++++++... ...+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|. .|. .+.-.+.-...|
T Consensus 205 ~~l~~~i~~~----~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~P 280 (445)
T PRK09221 205 DDLERLVALH----DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTP 280 (445)
T ss_pred HHHHHHHHhc----CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCC
Confidence 4666666532 1135677778778888999999 7644 56799999999999974 331 011122223468
Q ss_pred cEEEEcccccCCC--CCCceEEEEEeCCCcccc
Q 002866 356 DFIITSFYRVFGF--DPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 356 DFlv~S~HK~fG~--~PtGvG~LyVRk~~i~~L 386 (872)
|+++++ |-+|+ -| +|++.+++++++.+
T Consensus 281 Di~~~g--K~l~gG~~P--i~av~~~~~i~~~~ 309 (445)
T PRK09221 281 DIITFA--KGLTNGAIP--MGAVIASDEIYDAF 309 (445)
T ss_pred CEEEec--cccccCccc--ceeeEEcHHHHHhh
Confidence 987664 65542 13 68888888776554
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.081 Score=59.89 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEe-CCHHHHHHHHHhhCCCCCCCeEEEecccC---chhHHHHHHHHHHcCcEEEEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFT-VSRGSAFKLLAESYPFHTNKKLLTMFDYE---SQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFT-snATeALnLVaeslpf~~Gd~ILT~~DhE---HnSVl~~~~~AkrkGaeV~~V 272 (872)
++..-+++|.++.||++|+-+.|=-- -+++-|.--|-.++ .+++++|+-. |.+ |-+- +... ..+.+.-..+
T Consensus 86 ~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal-l~Ph~RiMGL-DLP~GGHLsH-Gy~T--~~kkISa~Si 160 (477)
T KOG2467|consen 86 QIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL-LKPHERIMGL-DLPSGGHLSH-GYQT--PTKKISATSI 160 (477)
T ss_pred HHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh-cCCCCeeeec-cCCCCCcccc-cccc--CCceeeeeee
Confidence 44455889999999999988776544 33444444444444 5778887632 222 2111 1111 0011222211
Q ss_pred -------eccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCCC-
Q 002866 273 -------WFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK- 343 (872)
Q Consensus 273 -------pvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~- 343 (872)
.++..+|-||.+.|++.-..+ +.+|++.-.-+ --..+++..++ .|.+.|++++.|.||.-|.
T Consensus 161 yFeSmPYkv~~~TG~IDYD~Le~~A~~f-------rPk~iiaG~Sa--Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLV 231 (477)
T KOG2467|consen 161 YFESMPYKVDPSTGYIDYDKLEKTATLF-------RPKLIIAGTSA--YSRLIDYARFRKIADKVGAYLMADMAHISGLV 231 (477)
T ss_pred ecccCceeeCCCCCceehHHHHHHHHhc-------CCcEEEecccc--chhhccHHHHHHHHHhcCceeehhhhhHHHHH
Confidence 356667899999999776554 35555543221 23456666554 5678999999999985432
Q ss_pred --CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 344 --DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 344 --~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
..+|=.+ -.||.++.+.||-+-+ |.| |+++.|+..
T Consensus 232 AA~vipsPF--ey~DiVTTTTHKsLRG-PRg-~mIFyRkGv 268 (477)
T KOG2467|consen 232 AAGVIPSPF--EYCDIVTTTTHKSLRG-PRG-AMIFYRKGV 268 (477)
T ss_pred hcccCCCcc--cccceeeccccccccC-Ccc-eeEEEeccC
Confidence 0011111 2589999999999888 875 666678864
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.043 Score=63.29 Aligned_cols=171 Identities=14% Similarity=0.195 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCH-HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSR-GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnA-TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
+.-.++-+.+|+|+|+.. .+||.-|- |-+.+ +-++ ..+|.-|++. +..|.|+. .-|+-.|+.+++..-+
T Consensus 182 ~~hkelE~l~A~f~g~e~---a~vF~mGf~TNs~~--~p~l-~~~gsLIiSD-elNHaSi~---~GaRLSgAtiRVfkHN 251 (519)
T KOG1357|consen 182 EEHKELEELVARFLGVED---AIVFSMGFATNSMN--IPSL-LGKGSLIISD-ELNHASLI---TGARLSGATTRVFRHN 251 (519)
T ss_pred HHHHHHHHHHHHhcCCcc---eEEEeccccccccC--ccee-ecCCcceeec-cccchhee---ccccccCceEEEEecC
Confidence 344567778999999964 49998772 11111 1112 2345445544 56778764 2345568888887643
Q ss_pred CCCCccCHHHHHHHHhhhh-----ccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc--
Q 002866 276 WPTLKLCSTDLRKQISSKK-----RRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS-- 347 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~-----rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip-- 347 (872)
++.+|+++|+... +....-+..++++-....+-|.+-.+. .+...+++.+++++|.|+++|. |-+
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA-~g~tG 324 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGA-MGATG 324 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccc-cCCCC
Confidence 4677777665431 111122456888888888999999996 5667789999999999998775 212
Q ss_pred ------CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 ------LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 ------LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+.+....+|.+-..|-|.||+ +=|.+--++..++.|+
T Consensus 325 rgvce~~g~d~~dvDImMGtftKSfga---~GGyiagsk~lid~lr 367 (519)
T KOG1357|consen 325 RGVCEYFGVDPEDVDIMMGTFTKSFGA---AGGYIAGSKELIDYLR 367 (519)
T ss_pred cceeeccCCCchhheeecceehhhccc---ccceecCcHHHHhhhc
Confidence 233445688999999998885 3454555555555543
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.29 Score=57.06 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccc-cCCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGS-LGPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ-~aG~~--mipLDLs~l~~ 355 (872)
+.+++++... .......|.+.-+.+..|.+.| ++. .+.|+++|+++++|=+| ..|.. +.-...-...|
T Consensus 208 ~~l~~~l~~~----~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~P 283 (460)
T PRK06541 208 DRIEEAIEFE----GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVP 283 (460)
T ss_pred HHHHHHHHhc----CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCC
Confidence 4566666421 1124677778778889999998 664 45679999999999997 34321 00111123468
Q ss_pred cEEEEcccccCCCCCCc---eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~ 387 (872)
|+++ +=|.+|+ | +|+++.+++.++.+.
T Consensus 284 Divt--~gK~l~~---G~~pigav~~~~~i~~~~~ 313 (460)
T PRK06541 284 DIIT--CAKGITS---GYSPLGAMIASDRLFEPFL 313 (460)
T ss_pred CEEE--ecccccC---CccceeEEEEcHHHHHHhh
Confidence 9876 5687663 3 799998888765553
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.24 Score=55.09 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=102.5
Q ss_pred HHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh---HHHHH----HHHHHcCcEEEEEeccCC
Q 002866 205 RIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS---VNWMA----QSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 205 rIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS---Vl~~~----~~AkrkGaeV~~Vpvd~p 277 (872)
--|+.||+...-...-|. ++|+|+..+..++ +++||+++...-.+... |..++ ..++..|++.+.+|+..
T Consensus 73 vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~-LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~- 149 (416)
T COG4100 73 VYAQVFGAEAALVRPQII-SGTHAIACALFGI-LRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTA- 149 (416)
T ss_pred HHHHHhccccceeeeeee-cchhHHHHHHHhc-cCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeeccccc-
Confidence 347788886442223344 5689999998887 58999976432212222 33443 34566799999999875
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc----CcccchhcHH-HHHHHHH--CCcEEEeecc--ccCCCCCccC
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS----RVTGAKYSYQ-WMALAQQ--NHWHVLLDAG--SLGPKDMDSL 348 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS----NvTG~i~PLe-~I~~Are--~G~~VLVDAA--Q~aG~~mipL 348 (872)
++.||.+.+...|+. +|+|+.+.--. +.+=.+-.++ .|...++ -++.++||-| -++-. ..|.
T Consensus 150 ~gkiD~~~v~~~i~~--------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~-~EPt 220 (416)
T COG4100 150 DGKIDIQAVKTAISD--------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE-KEPT 220 (416)
T ss_pred CCcccHHHHHHhcCc--------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc-cCcc
Confidence 689999999888863 69999886432 1222233333 2344443 5788999998 34432 1343
Q ss_pred CCCCCCCcEEEEcccccCCCC-CCceEEEEEeCCCcc
Q 002866 349 GLSLFRPDFIITSFYRVFGFD-PTGFGCLLIKKSVMG 384 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~-PtGvG~LyVRk~~i~ 384 (872)
..++|.++.|.-|--|+. .+--|.+.-|.++.+
T Consensus 221 ---~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve 254 (416)
T COG4100 221 ---HVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE 254 (416)
T ss_pred ---ccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence 458999999999975531 111244555555543
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.49 Score=55.93 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
++|+++|... ...+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-.+.-...|
T Consensus 247 ~~le~~l~~~----~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~P 322 (504)
T PLN02760 247 DNLENLILKE----GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKP 322 (504)
T ss_pred HHHHHHHHhc----CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCC
Confidence 4566666421 1124667777667777899998 7754 56799999999999983 4320 11112223469
Q ss_pred cEEEEcccccCCCCCCc---eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~ 387 (872)
|.+++ =|.+|+ | +|++++++++.+.+.
T Consensus 323 Divtl--gK~lgg---G~~PigAv~~~~~i~d~~~ 352 (504)
T PLN02760 323 DLVSL--AKALSS---AYMPIGAVLVSPEISDVIH 352 (504)
T ss_pred cEEEe--cccccC---CccccceEeecHHHHhhhh
Confidence 97665 577663 3 788888888776654
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.4 Score=50.77 Aligned_cols=222 Identities=8% Similarity=0.028 Sum_probs=110.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+.+++.+. + ..+. +..++. ++ ...++-+ +++++++... ....+.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q-------l-~~~~-~~~~~~~~~-~~~~~la-~~l~~~~p~~-~~~~~~ 105 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQ-------L-QQFT-HTAYQIVPY-ESYVTLA-EKINALAPVS-GQAKTA 105 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHH-------H-Hhcc-CcccCccCC-HHHHHHH-HHHHHhCCCC-CCceEE
Confidence 45789998554 34456677765331 1 1111 111111 22 1223333 3456665421 123699
Q ss_pred EeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHcCc-----EEEEEeccCCCCcc----CHHH
Q 002866 221 FTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEKGA-----KVYSAWFKWPTLKL----CSTD 285 (872)
Q Consensus 221 FTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krkGa-----eV~~Vpvd~p~g~I----d~ed 285 (872)
|+.++|||+.....- ..+....+|++....-|....+..... .+.|. .+..+|+......+ +.+.
T Consensus 106 f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~ 185 (421)
T PRK09792 106 FFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDA 185 (421)
T ss_pred EeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHH
Confidence 999999976653331 112222356654332244333222110 11121 13334442211011 2355
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchh-cH---HH-HHHHHHCCcEEEeecccc-CCCCCccCCCC--CCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-SY---QW-MALAQQNHWHVLLDAGSL-GPKDMDSLGLS--LFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-PL---e~-I~~Are~G~~VLVDAAQ~-aG~~mipLDLs--~l~~DF 357 (872)
+++++... ....+...|.+.-+.+.+|... |- +. .+.|+++|+++++|=++. .|..-..+-+. ...||+
T Consensus 186 l~~~~~~~---~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi 262 (421)
T PRK09792 186 IERLFKSD---IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL 262 (421)
T ss_pred HHHHHHhc---cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE
Confidence 66666421 0112467777777788999876 63 33 356789999999999865 32210011122 246885
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.++=|.+|+ =.-+|+++.++++++.+.
T Consensus 263 --~t~gK~l~~-G~pigav~~~~~i~~~~~ 289 (421)
T PRK09792 263 --MTMAKSLAG-GMPLSGVVGNANIMDAPA 289 (421)
T ss_pred --EEeehhhcC-CCceEEEEEcHHHHhccC
Confidence 455787652 012788888877765553
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.41 Score=55.76 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-C-----CCCCe-EEEecccCchhHHHHHHHHH---Hc--C
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-F-----HTNKK-LLTMFDYESQSVNWMAQSAK---EK--G 266 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f-----~~Gd~-ILT~~DhEHnSVl~~~~~Ak---rk--G 266 (872)
..+.=+++++++...-+ .+.|+.++|+|+........ + ++++. |++...--|.+...-..... .+ +
T Consensus 100 ~~~lae~L~~~~p~~~~--~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~ 177 (460)
T PRK12403 100 VIELSELLFSLLPGHYS--HAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMG 177 (460)
T ss_pred HHHHHHHHHHhCCCCcC--EEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccC
Confidence 34455667777764322 59999999998776544321 1 12333 44433322444332211100 00 0
Q ss_pred ---cEEEEEeccCC-C--Ccc--------CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHH
Q 002866 267 ---AKVYSAWFKWP-T--LKL--------CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQ 327 (872)
Q Consensus 267 ---aeV~~Vpvd~p-~--g~I--------d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Ar 327 (872)
-.+..+|.... . ..+ +.+++++.+... ...+...|.+--+...-|.+.| ++.+ +.|+
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~----~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~ 253 (460)
T PRK12403 178 GLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL----GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICR 253 (460)
T ss_pred CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh----CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 01223331100 0 001 124455544321 1124666777777777899988 6644 5679
Q ss_pred HCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 328 QNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 328 e~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++|+++++|=+|. .|.. +.-.+.-.+.||+++ +=|.+|+.=.-+|++++++++.+.+.
T Consensus 254 ~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~~ 314 (460)
T PRK12403 254 QYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLVLSKRIAEALV 314 (460)
T ss_pred HcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--EcccccccccceEEEEECHHHHHHHh
Confidence 9999999999984 3220 111122234689987 56866630001678888877665553
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.55 Score=54.72 Aligned_cols=203 Identities=8% Similarity=-0.005 Sum_probs=109.9
Q ss_pred CCceecccCCC-CC-----CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF-GL-----FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt-gp-----~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|+.+. ++ -.+.+.+++.+ .+ ... ..++-++ ....+.-++|.+.+++ + .|.|
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~-------q~-~~~---~~~~~~~--~~~~~lAe~l~~~~~~--~--~v~F 135 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAE-------QA-RRG---LTTMLPS--EDAAWVGEELARRFGL--P--YWQV 135 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHH-------HH-HhC---CCCCCCC--HHHHHHHHHHHHHhCC--C--EEEE
Confidence 45789997533 22 33666666533 11 111 1233333 2333455566677653 2 5999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH------HHc---Cc------EEEEEeccCCCCccCHHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA------KEK---GA------KVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A------krk---Ga------eV~~Vpvd~p~g~Id~ed 285 (872)
+.++|||......- ..+...++|+.....-|....+..-.. .+. |. .+..+ .++ +.+.
T Consensus 136 ~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~n----d~~~ 209 (453)
T PRK07046 136 ATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVV--EFN----DLAA 209 (453)
T ss_pred ECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEee--CCC----CHHH
Confidence 99999987654332 223223446554332344321111100 000 11 11222 221 5677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhcH----HHH-HHHHHCCcEEEeecccc----CCCCCccCCCCCCCCc
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY----QWM-ALAQQNHWHVLLDAGSL----GPKDMDSLGLSLFRPD 356 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL----e~I-~~Are~G~~VLVDAAQ~----aG~~mipLDLs~l~~D 356 (872)
+++++.. .+...|.+--+....|.+.|- +.+ +.|+++|+++++|=+|. .|.. ...-.+.||
T Consensus 210 l~~~l~~-------~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~---~~~~gv~PD 279 (453)
T PRK07046 210 LEAALAD-------GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY---TRAHGLEPD 279 (453)
T ss_pred HHHHhCC-------CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch---hHHhCCCcc
Confidence 7777731 246666666666667888873 433 46789999999999984 2221 111234699
Q ss_pred EEEEcccccCCCC-CCceEEEEEeCCCccccc
Q 002866 357 FIITSFYRVFGFD-PTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~-PtGvG~LyVRk~~i~~L~ 387 (872)
.+++ =|.+|+. | +|++..|+++++.+.
T Consensus 280 i~t~--gK~lggG~P--i~av~g~~~i~~~~~ 307 (453)
T PRK07046 280 FLVV--GKPIAGGVP--CAVYGFSAELAERAQ 307 (453)
T ss_pred ceee--hhhhcCCCc--ceeeeehHHHHHHHh
Confidence 9875 6765531 3 788888888776554
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1 Score=51.90 Aligned_cols=222 Identities=8% Similarity=-0.039 Sum_probs=105.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+.+++.+. + ..+. +... ..++ +...+.=+++++++.-... ..|.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q-------l-~~l~-~~~~~~~~~--~~~~~la~~l~~~~p~~~~-~~v~ 105 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQ-------L-DRFT-HTCHQVVPY--ENYVRLAERLNALVPGDFA-KKTI 105 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHH-------H-hhcc-CcccCccCC--HHHHHHHHHHHHhCCCCCC-CEEE
Confidence 34789997544 34456677765331 1 1111 1111 1111 2233344556666642211 1699
Q ss_pred EeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHH-----HHHcCc-----EEEEEeccCCCCccC----HHH
Q 002866 221 FTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQS-----AKEKGA-----KVYSAWFKWPTLKLC----STD 285 (872)
Q Consensus 221 FTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~-----AkrkGa-----eV~~Vpvd~p~g~Id----~ed 285 (872)
|+.++|||+.....- ..+....+|++....-|......... ..+.+. .+..+|+....-.++ .++
T Consensus 106 f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 185 (425)
T PRK07495 106 FVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAA 185 (425)
T ss_pred ECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHH
Confidence 999999976654331 11222345665433224432221111 011111 244555532111112 334
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchh-cHH---H-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-SYQ---W-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-PLe---~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
+++.+.... ...+...|.+.-+...+|.+. |-+ . .+.|+++|+++++|=+|. .|.. +...+.....||+
T Consensus 186 l~~~~~~~~---~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi 262 (425)
T PRK07495 186 LDKLFKADV---DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL 262 (425)
T ss_pred HHHHHHhcc---CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE
Confidence 455553210 112344444444444488664 433 2 356789999999999975 2221 0012222345776
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+++ =|.+|+ -.=+|++..++++.+.+.
T Consensus 263 ~tl--sK~l~~-G~pigav~~~~~i~~~~~ 289 (425)
T PRK07495 263 TTM--AKGLAG-GFPLAAVTGRAEIMDAPG 289 (425)
T ss_pred Eee--hhhhcC-CccceEEEEcHHHHhccC
Confidence 555 576552 011788888877765554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.34 Score=55.73 Aligned_cols=211 Identities=12% Similarity=0.124 Sum_probs=119.5
Q ss_pred CceecccCC-CC-----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCG-FG-----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAA-tg-----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+.-|||..+ .+ -..+.+++++.+. ...+. .+ ...|.|+. ..+.=++++++.+ ..+ .|.|+
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q----~~kl~-h~--sn~~~~~~----~~~la~~L~~~s~-~~d--~vff~ 106 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKEQ----AEKLW-HV--SNLFYNEP----QAELAEKLVELSP-FAD--RVFFC 106 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHHH----HHHhh-hc--ccccCChH----HHHHHHHHHhhCc-ccc--EEEEc
Confidence 378999433 32 2456677765331 11111 11 12344443 3345556666665 223 59999
Q ss_pred CCHHHHHHHHHh---hCCCCC-CCeEEEecccCchhHHHHH----HHHHHcCc-----EEEEEeccCCCCccCHHHHHHH
Q 002866 223 VSRGSAFKLLAE---SYPFHT-NKKLLTMFDYESQSVNWMA----QSAKEKGA-----KVYSAWFKWPTLKLCSTDLRKQ 289 (872)
Q Consensus 223 snATeALnLVae---slpf~~-Gd~ILT~~DhEHnSVl~~~----~~AkrkGa-----eV~~Vpvd~p~g~Id~edLe~~ 289 (872)
.++|||+...+. -+...+ ..+||+....-|.-.+... +-.-+++. .+..+|++ |.+.++++
T Consensus 107 NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn------Di~al~~a 180 (404)
T COG4992 107 NSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN------DIEALEAA 180 (404)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC------CHHHHHHH
Confidence 999998776443 232212 2356655332232111100 11111222 24455543 56888888
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhcHH-HH---H-HHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEEEEc
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WM---A-LAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFIITS 361 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I---~-~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~S 361 (872)
|.. .|.-|.+--+.-+-|++.|-. -+ + +|.++|+++++|=+|.+ |.. +.-..-....||.++.
T Consensus 181 i~~--------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tl- 251 (404)
T COG4992 181 IDE--------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTL- 251 (404)
T ss_pred hcc--------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEe-
Confidence 864 588999999999999999864 23 3 46789999999999964 210 1112223457898775
Q ss_pred ccccCCCCCCceEEEEEeCCCcccccCCC
Q 002866 362 FYRVFGFDPTGFGCLLIKKSVMGSLQNQS 390 (872)
Q Consensus 362 ~HK~fG~~PtGvG~LyVRk~~i~~L~P~~ 390 (872)
-|-+|+. .=+|+++.++.....+.|-.
T Consensus 252 -aK~LgGG-~PigA~la~~~~~~~~~~G~ 278 (404)
T COG4992 252 -AKALGGG-FPIGAMLATEEIASAFTPGD 278 (404)
T ss_pred -eccccCC-ccceeeEEchhhhhcCCCCc
Confidence 4765541 23899999866566666543
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.5 Score=51.35 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=117.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+. +-..+.|++++.+. +..+. ..+..+.. .+...+.=+++.+++-.+ ....+.|
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q----~~~~~---h~~~~~~~---~e~~v~~ae~L~~~~p~~-~~~~~~f 122 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQ----LAKLN---HTHTRDLY---YEPYVELAEKLTALAPGS-GLKKVFF 122 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHH----HHHhh---cccCCccc---chhHHHHHHHHHHhCCcc-cCCeEEe
Confidence 35789998872 33567788875431 11111 01111211 122233334555555443 1225889
Q ss_pred eCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHH-----HHHcC-----cEEEEEeccCCCC-----------
Q 002866 222 TVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQS-----AKEKG-----AKVYSAWFKWPTL----------- 279 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~-----AkrkG-----aeV~~Vpvd~p~g----------- 279 (872)
+.++|+|+...+.--.+..| ..||+-..--|.....-..+ ..+.| ..|..+|...+-.
T Consensus 123 ~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~ 202 (447)
T COG0160 123 GNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECG 202 (447)
T ss_pred cCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhh
Confidence 99999998876553222233 34554332124433222111 11111 2366676543211
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HH----HHHHHCCcEEEeeccccC----CCCCccCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WM----ALAQQNHWHVLLDAGSLG----PKDMDSLGL 350 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I----~~Are~G~~VLVDAAQ~a----G~~mipLDL 350 (872)
.-..+.++.+|.... ....+...|.+--+..+-|.+.|=+ ++ ++|+++|+.+++|=+|.+ |+ |.-+.-
T Consensus 203 ~~~~~~~e~~i~~~~--~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~ 279 (447)
T COG0160 203 DDALEYIERALFDLE--VGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEH 279 (447)
T ss_pred HHHHHHHHHHHHhhc--CCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhh
Confidence 011222344343211 1223466777777888899988854 55 356899999999999964 33 333333
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
....||.++++ |-+|+ =.=+|+++.|+++..
T Consensus 280 ~gv~PDivt~a--K~ig~-G~Pl~avv~r~ei~~ 310 (447)
T COG0160 280 FGVEPDIVTLA--KSLGG-GLPLSAVVGRAEIMD 310 (447)
T ss_pred cCCCCCEEEec--ccccC-CCceeEEeccHHhcc
Confidence 34469999876 65442 122888999999876
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.31 Score=58.53 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH----HHHHHhhCCCCCCCe-----EEEecccCchhHHHHHHHHHHcCc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA----FKLLAESYPFHTNKK-----LLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeA----LnLVaeslpf~~Gd~-----ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
+++.+.-+-+..+.|-+ .+-|-+|...+ =-.++++|.-++|.. ++-...|.-| + ..|.-.|.
T Consensus 582 ~lf~~Le~~Lc~iTG~D----~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN---P--ASA~Magm 652 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITGFD----SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN---P--ASAAMAGM 652 (1001)
T ss_pred HHHHHHHHHhheeeccc----ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC---h--hhHHhcCC
Confidence 46666677777777764 37788776542 224566765555542 3434444433 1 12344699
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc-HH-HHHHHHHCCcEEEeecccc---CC
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS-YQ-WMALAQQNHWHVLLDAGSL---GP 342 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P-Le-~I~~Are~G~~VLVDAAQ~---aG 342 (872)
+|..|.++. +|.|+..+|+.+..+++. .-..-+|.+|. ..|+.-| |+ ++..+|++|-.|-+|+|-. +|
T Consensus 653 kvvpV~~~~-~G~id~~dLk~kaekh~~---~Laa~MvTYPS---T~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVG 725 (1001)
T KOG2040|consen 653 KVVPVGCDA-NGNIDMVDLKAKAEKHKD---NLAALMVTYPS---THGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVG 725 (1001)
T ss_pred EEEEeeccC-CCCccHHHHHHHHHHhhh---hhheeEEeccc---ccccccccHHHHHHHHHhcCCEEEecCCCccceec
Confidence 999999887 589999999988765421 11233444443 2455444 54 6778899999999999942 33
Q ss_pred CCCccCCCCCCCCcEEEEcccccCCCCC-----CceEEEEEeCCCccccc
Q 002866 343 KDMDSLGLSLFRPDFIITSFYRVFGFDP-----TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 343 ~~mipLDLs~l~~DFlv~S~HK~fG~~P-----tGvG~LyVRk~~i~~L~ 387 (872)
. -.--+++.|.--...||.|+. | .|+|=+-||+-+.+.|.
T Consensus 726 l----c~pGd~GaDV~HLNLHKTFcI-PHGGGGPg~gPIgVK~HLapfLP 770 (1001)
T KOG2040|consen 726 L----CRPGDIGADVCHLNLHKTFCI-PHGGGGPGMGPIGVKKHLAPFLP 770 (1001)
T ss_pred c----cCCccccccceeecccceeee-cCCCCCCCCCccchhhhccccCC
Confidence 2 122457899999999998654 3 26777888887777664
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.3 Score=51.45 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH-----HcC-----cE
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK-----EKG-----AK 268 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rkG-----ae 268 (872)
.+.-+++++++..... ..|.|+.++|||+.....- ..+....+||+....-|....+...... +.+ ..
T Consensus 88 ~~lae~L~~~~p~~~~-~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~ 166 (445)
T PRK08593 88 VRLAKKLCELAPGDFE-KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG 166 (445)
T ss_pred HHHHHHHHHhCCCCCC-CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCC
Confidence 4455567777643211 2699999999987764442 1122223466543322444332221110 110 11
Q ss_pred EEEEeccCCC----CccCH-------HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcE
Q 002866 269 VYSAWFKWPT----LKLCS-------TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWH 332 (872)
Q Consensus 269 V~~Vpvd~p~----g~Id~-------edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~ 332 (872)
+..+|..... ...+. +++++++..+ ....++..|.+--+....|.+.| ++.+ +.|+++|+.
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~l 243 (445)
T PRK08593 167 FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKY---LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGIL 243 (445)
T ss_pred cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhh---cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 3334432110 00111 2233333211 01135777777778788899877 5543 567999999
Q ss_pred EEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 333 VLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 333 VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++|=+|. .|.. +.-.+.-...||++++ =|-+|. | +|++..++++++.+.
T Consensus 244 lI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~--gK~l~~---G~p~gav~~~~~i~~~~~ 298 (445)
T PRK08593 244 FAVDDIQQGLGRTGKWSSISHFNITPDLMSF--GKSLAG---GMPMSAIVGRKEIMESLE 298 (445)
T ss_pred EEEechhhCCCcCchHHHHHhcCCCCCEeee--cccccC---CcccEEEEEcHHHHhhhc
Confidence 99999973 3321 0001222346897754 576553 3 788999988776664
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.5 Score=50.25 Aligned_cols=222 Identities=11% Similarity=0.013 Sum_probs=112.6
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+++++.+. + ..+. +..+. .++ ....+.-+++++++... ....|.
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q-------l-~~~~-~~~~~~~~~--~~~~~la~~l~~~~p~~-~~~~v~ 98 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQ-------V-AEFT-HTCFMVTPY--EGYVALAEKLNRIAPGS-GPKKSV 98 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHH-------H-Hhcc-CccccccCC--hHHHHHHHHHHHhCCCC-CCCEEE
Confidence 44779997544 34456777765431 1 1111 11111 122 22234444566666321 112699
Q ss_pred EeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHcCc-----EEEEEeccCCCC------cc--
Q 002866 221 FTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEKGA-----KVYSAWFKWPTL------KL-- 281 (872)
Q Consensus 221 FTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krkGa-----eV~~Vpvd~p~g------~I-- 281 (872)
|+.++|||+.....- ..+....+|++....-|....+..... .+.|. .+..+|+..+.. ..
T Consensus 99 f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (420)
T TIGR00700 99 FFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLST 178 (420)
T ss_pred EeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhH
Confidence 999999986654331 122223446655432344443332211 11221 223333321000 01
Q ss_pred --CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCC
Q 002866 282 --CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLS 351 (872)
Q Consensus 282 --d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs 351 (872)
+.+.+++.+... ....+...|.+--+...+|.+.| ++. .+.|+++|+++++|=++. .+.. +..++-.
T Consensus 179 ~~~~~~~~~~~~~~---~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~ 255 (420)
T TIGR00700 179 DGELAAARAIFVID---VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHE 255 (420)
T ss_pred HHHHHHHHHHHHhh---cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhc
Confidence 133455554311 01235777777777788999888 443 456799999999999864 2221 1112222
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
...||.++ +=|.+++ =-=+|++++++++++.+.
T Consensus 256 ~~~pDi~~--lsK~l~~-G~pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 256 GPEPDLIT--TAKSLAD-GLPLSGVTGRAEIMDAPA 288 (420)
T ss_pred CCCCCEEE--eeccccC-CcceEEEEecHHHHhhcC
Confidence 34688665 5686652 112788888877765543
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=52.42 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=54.2
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+...|.+--+....|.+.| ++.+ ++|+++|+++++|=+|. .|.. +.-.+.-...||.+++ =|-+|+ |
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~g---G 293 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLTS---G 293 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhcc---C
Confidence 4666666666666888887 4434 46789999999999974 3321 1122233457998776 576553 4
Q ss_pred ---eEEEEEeCCCcccc
Q 002866 373 ---FGCLLIKKSVMGSL 386 (872)
Q Consensus 373 ---vG~LyVRk~~i~~L 386 (872)
+|++++++++.+.+
T Consensus 294 ~~Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 294 YIPMGAVGVGDRVAEVL 310 (456)
T ss_pred CccceEEEEcHHHHHHH
Confidence 79999998877665
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.4 Score=50.47 Aligned_cols=98 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeeccccC-CCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~ 355 (872)
++|++++.... ...+...|.+.-+....|.+.| ++ +++.|+++|+++++|=++.. +.. +..++.....+
T Consensus 185 ~~l~~~l~~~~---~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~p 261 (425)
T PRK08088 185 ASIERIFKNDA---APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAA 261 (425)
T ss_pred HHHHHHHHhcc---CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCC
Confidence 45666664210 1124566666666666677776 44 45678999999999998652 221 11222333456
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
| +.|+=|.+++ =.-+|++..++++++.+.
T Consensus 262 d--i~s~sK~l~~-G~rig~v~~~~~~~~~~~ 290 (425)
T PRK08088 262 D--LTTFAKSIAG-GFPLAGVTGRAEVMDAIA 290 (425)
T ss_pred C--EEEEeccccC-CCcceeeEecHHHHhhcC
Confidence 7 4677898873 122788988877766554
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.15 Score=59.25 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=82.2
Q ss_pred EEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH
Q 002866 244 LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM 323 (872)
Q Consensus 244 ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I 323 (872)
|+++.|--|.+|.. .+--.|++++.++.+. +..+..+.|+++|.++..+... .=+++.+....-+-..=+|+.+
T Consensus 184 V~Y~SDqahssvek---a~~i~~VklR~l~td~-n~~mr~~~L~~AIe~D~arGlI--Pf~v~at~GTT~~ca~D~l~el 257 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEK---ACLIAGVKLRALPTDE-NFGMRGDTLRKAIEEDIARGLI--PFFVCATLGTTSSCAFDELEEL 257 (511)
T ss_pred eEEecCcccchHHH---hHhhcceeEEEeeccc-CcCCCHHHHHHHHHHHHhCCCc--cEEEEEeecCccccccccHHHh
Confidence 44555666777753 3334589999999987 5778999999999876432211 1222333222223334446544
Q ss_pred -HHHHHCCcEEEeeccccCCCCCccCCCCC--------CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 324 -ALAQQNHWHVLLDAGSLGPKDMDSLGLSL--------FRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 324 -~~Are~G~~VLVDAAQ~aG~~mipLDLs~--------l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
..|+++|+++|||||=++.. +-..+ -.+|-+-+..|||+-. -.-+-.||+|...
T Consensus 258 g~Vc~~~glWLHVDAAYAGsa----~iCpE~r~l~rGie~aDSfn~n~hK~~~v-nfDCs~lWvkd~~ 320 (511)
T KOG0628|consen 258 GPVCREEGLWLHVDAAYAGSA----FICPEFRYLMRGIEYADSFNFNPHKWLLV-NFDCSPLWVKDGT 320 (511)
T ss_pred cchhhhcCEEEEeehhhcccc----ccCHHHHHHhhcchhhccccCChhheeEE-eeeeecceeecCc
Confidence 57799999999999943221 11111 2479999999999765 3567889998863
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.27 Score=54.71 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=73.3
Q ss_pred CCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCCCCccCCCCCC----CCc-EEEEcccccCCCC
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPKDMDSLGLSLF----RPD-FIITSFYRVFGFD 369 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~~mipLDLs~l----~~D-Flv~S~HK~fG~~ 369 (872)
...+++++|+--.|.||.++-=+++ +.|+++|+.+++|-|=.+|.. -+.+++. +.. .+++|.-|. |-|
T Consensus 177 ~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP--~iifsd~~~~w~~NiilC~SLSK~-GLP 253 (417)
T COG3977 177 GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP--GIIFSDATPLWNENIILCMSLSKL-GLP 253 (417)
T ss_pred ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC--ceecccccccCCCCEEEEeehhhc-CCC
Confidence 3579999999999999999877654 346899999999999777752 3445543 333 578899996 432
Q ss_pred CCceEEEEEeCCCcccccCCCCCCCCCeEEEeeCC
Q 002866 370 PTGFGCLLIKKSVMGSLQNQSGQTGSGMVKITPEY 404 (872)
Q Consensus 370 PtGvG~LyVRk~~i~~L~P~~~~~GgGtV~~vP~~ 404 (872)
-.-+|+.+....++..+..-. |++++.|+.
T Consensus 254 G~R~GIiIane~viqaitnmn-----~iisLap~~ 283 (417)
T COG3977 254 GSRCGIIIANEKVIQAITNMN-----GIISLAPGR 283 (417)
T ss_pred CcceeEEEccHHHHHHHHhcc-----ceeeecCCC
Confidence 345899999998888877543 778887764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.95 Score=51.97 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCCCcc-CC--CCC
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKDMDS-LG--LSL 352 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~mip-LD--Ls~ 352 (872)
+.+.+++++.. .+...|.+.-+....|.+.| ++ +.+.|+++|+++++|=++. .|.. -. +- ...
T Consensus 175 d~~~l~~~~~~-------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~a~~~~~ 246 (408)
T PRK04612 175 DVEALEAAMAG-------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT-GTLFAHWQEQ 246 (408)
T ss_pred CHHHHHHhhCC-------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-CchhhhhhcC
Confidence 46777776642 13455555444444455553 23 3356789999999999975 3221 11 11 112
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
..||++++ =|.+|+. -=+|+++.+++..+.+
T Consensus 247 ~~pdi~t~--~K~l~~G-~piga~~~~~~~~~~~ 277 (408)
T PRK04612 247 VTPDIVTL--AKALGGG-FPIGAMLAGPKVAETM 277 (408)
T ss_pred CCCCEEEE--cchhcCC-CceEEEEECHHHHhhh
Confidence 34565554 6876630 1178887777655444
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.72 Score=52.93 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-ccCchhHHHHHHHHHHcCcE
Q 002866 196 GTVEHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMF-DYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 196 ~~~ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~-DhEHnSVl~~~~~AkrkGae 268 (872)
++-+.-+|+.||+|+- |+|+ +|.+|.||+.|++.+..-+--.+.+-|+++- -|+ + .-+..+.-.|..
T Consensus 112 SqGv~~vR~~VA~~I~rRDG~p~~p~--dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYP---L-YsAti~l~~~~~ 185 (475)
T KOG0258|consen 112 SQGVPGVRKHVAEFIERRDGIPADPE--DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYP---L-YSATISLLGGTQ 185 (475)
T ss_pred ccCChhHHHHHHHHHHhccCCCCCHH--HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCc---h-hHHHHHHhCCcc
Confidence 4567789999999985 4454 5999999999999888766444555566542 232 1 111222222333
Q ss_pred EE-EEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc
Q 002866 269 VY-SAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 269 V~-~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA 338 (872)
|- ++.... +..++.++|++.+...+ +.-+.++.++----|.||+.+.-+ ++.-|++.|+.+|-|-+
T Consensus 186 v~YyLdEe~-~W~ld~~el~~~~~eA~---k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEV 256 (475)
T KOG0258|consen 186 VPYYLDEES-NWSLDVAELERSVDEAR---KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEV 256 (475)
T ss_pred cceeecccc-CCCCCHHHHHHHHHHHh---ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHH
Confidence 32 332221 23578999998887643 233455666656779999999865 45667899999999987
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.5 Score=51.18 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=103.3
Q ss_pred CCceecccCCC-----CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCC-chHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF-----GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGA-EKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt-----gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNp-sS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||.++. +.-.+.+++++.+. + ..+ .+... ...+...+.-+++++++....+ .|.|
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~q-------l-~~~----~~~~~~~~~~~~~~lae~L~~~~p~~~~--~v~f 135 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQ-------M-AKL----PFSPRRFTNETAIECAEKLTEIAGGELN--RVLF 135 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHH-------H-HhC----CCccCccCCHHHHHHHHHHHHhCCCCCC--EEEE
Confidence 45779997643 33456777765431 1 111 11111 0123344555667777753222 6999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecc-cCchhHHHHHHHH----HHcC-----cEEEEEeccC----CCCcc-----
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFD-YESQSVNWMAQSA----KEKG-----AKVYSAWFKW----PTLKL----- 281 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~D-hEHnSVl~~~~~A----krkG-----aeV~~Vpvd~----p~g~I----- 281 (872)
+.++++|+..+..- ..+....+||+... |++.+...+. .. .+.+ ..+..+|... +....
T Consensus 136 ~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (459)
T PRK06082 136 APGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAIS-VGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDV 214 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHh-hcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHH
Confidence 99999986654331 11222345666544 4333322221 11 0011 0122233110 00000
Q ss_pred -CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCC
Q 002866 282 -CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLF 353 (872)
Q Consensus 282 -d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l 353 (872)
+.+.+++.|.. ..+...|.+--+.+..+...| ++.+ +.|+++|+++++|=+|.+ |.. +.-...-..
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv 288 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI 288 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC
Confidence 12345555542 124566666556555344555 3434 467899999999999763 221 001112234
Q ss_pred CCcEEEEcccccCCCCCCc---eEEEEEeCCC
Q 002866 354 RPDFIITSFYRVFGFDPTG---FGCLLIKKSV 382 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~ 382 (872)
.||+++ +=|.+|+ | +|++++++++
T Consensus 289 ~PDiv~--~gKgl~g---G~~P~~av~~~~~i 315 (459)
T PRK06082 289 EPDILC--IGKGLGG---GLVPIAAMITKDKY 315 (459)
T ss_pred CCCEEE--ecccccC---CCCcceEEEEcHHH
Confidence 699887 4676653 3 5777777654
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.87 Score=51.60 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=58.2
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCC
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLF 353 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l 353 (872)
+++.|++.+.. .+...|.+.-+.|..|...| ++ ..+.|+++|+++++|=++. .|.. +.+.++..+
T Consensus 155 d~~~l~~~~~~-------~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~ 227 (382)
T PLN00144 155 NLEAARKLIQK-------GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV 227 (382)
T ss_pred CHHHHHHhcCC-------CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC
Confidence 46777777632 13445555545666555443 23 2356799999999999965 3221 112234556
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.|| +.++=|.+++ =.-+|+++++++.++.+.
T Consensus 228 ~PD--i~t~sK~l~~-G~pig~v~~~~~~~~~~~ 258 (382)
T PLN00144 228 EPD--IMTLAKPLAG-GLPIGAVLVTEKVASAIN 258 (382)
T ss_pred CCC--EEEecccccC-CcceEEEEEcHHHHhccC
Confidence 799 5555687652 112888988888776654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.23 Score=55.33 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC------CCCC-CeEEEecccCchhHHHHHHH----HHHcC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP------FHTN-KKLLTMFDYESQSVNWMAQS----AKEKG 266 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp------f~~G-d~ILT~~DhEHnSVl~~~~~----AkrkG 266 (872)
...+.-+++.+.++-. -..|.|+.++|+|+...+.-.. -.++ .+|++....-|....+.... ..+.+
T Consensus 60 ~~~~la~~L~~~~p~~--~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~ 137 (339)
T PF00202_consen 60 EAAELAEKLAELFPGG--LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKG 137 (339)
T ss_dssp HHHHHHHHHHHHSSTT--EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT
T ss_pred chhhhhhhhhhccccc--cceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccc
Confidence 3445666777777332 2369999999998765443211 1223 34665433224333222211 11111
Q ss_pred -----cEEEEEeccCCCC----ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HHH----HHHHHCCcE
Q 002866 267 -----AKVYSAWFKWPTL----KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QWM----ALAQQNHWH 332 (872)
Q Consensus 267 -----aeV~~Vpvd~p~g----~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~I----~~Are~G~~ 332 (872)
..+..+|...+.. .-...++++.+.... ..+...|.+--+....|.+.|= +++ +.|+++|++
T Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil 213 (339)
T PF00202_consen 138 FGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN----ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL 213 (339)
T ss_dssp TCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH----GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred ccccccccccccCCccchhhhHHHHHHHHHHHHHhhc----CCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence 2346666543210 001112333333211 1245566666666667877763 233 467899999
Q ss_pred EEeeccccC-CCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 333 VLLDAGSLG-PKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 333 VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++|=+|.+ |.. +.-.+...+.||+++++ |.+++- .-+|++++++++.+.+.+
T Consensus 214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG-~p~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGG-LPISAVLGSEEIMEAFQP 269 (339)
T ss_dssp EEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTT-SSEEEEEEEHHHHTTSCT
T ss_pred eecccccccccccCCccceecccccCcccccc--cchhhh-hhcccccccchhhccccc
Confidence 999999864 221 11122334679999998 876541 338999999988776654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.2 Score=51.85 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=53.0
Q ss_pred CceEEEEeCccCcccchhcH----HHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCC--C
Q 002866 301 AAGLFVFPVQSRVTGAKYSY----QWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFD--P 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PL----e~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~--P 370 (872)
+..-|.+--+....|.+.|- +.+ +.|+++|+++++|=+|. .|.. +.-..--...||++++ =|-+|+. |
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~P 290 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYLP 290 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCcc
Confidence 45566665555667888773 333 45789999999999984 3321 1011112346999877 5765530 2
Q ss_pred CceEEEEEeCCCccccc
Q 002866 371 TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 371 tGvG~LyVRk~~i~~L~ 387 (872)
+|++.+++++.+.+.
T Consensus 291 --i~av~~~~~i~~~~~ 305 (451)
T PRK07678 291 --LSATAVKKEIYEAFK 305 (451)
T ss_pred --eeEEEEcHHHHHHHh
Confidence 789999988776554
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.4 Score=47.56 Aligned_cols=222 Identities=9% Similarity=0.046 Sum_probs=108.9
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+.+++.+. ...+. +..+. .++ ...++-+ +++++++.... ...+.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q--------l~~~~-~~~~~~~~~-~~~~~la-~~l~~~~p~~~-~~~~~ 105 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQ--------LDQFT-HTAYQIVPY-ASYVTLA-ERINALAPIDG-PAKTA 105 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHH--------Hhhcc-cccccccCC-hHHHHHH-HHHHHhCCCCC-CceEE
Confidence 45789997544 34456677765331 11111 11111 122 1233334 55667764321 12699
Q ss_pred EeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH-----HcCc-----EEEEEeccCCC-C---ccCHHH
Q 002866 221 FTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK-----EKGA-----KVYSAWFKWPT-L---KLCSTD 285 (872)
Q Consensus 221 FTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rkGa-----eV~~Vpvd~p~-g---~Id~ed 285 (872)
|+.++|||+.....- ..+....+|++....-|....+...... +.+. .+..++..... + .-+.+.
T Consensus 106 f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 185 (421)
T PRK06777 106 FFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSS 185 (421)
T ss_pred EeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHH
Confidence 999999986654331 1222233466543322444333221110 0110 11222221100 0 012445
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccch-hcHH---H-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK-YSYQ---W-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i-~PLe---~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
+++.+... ....+...|.+.-+.+..|.. .|-+ . .+.|+++|+++++|=++. .|.. +.....-...||.
T Consensus 186 l~~~~~~~---~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDi 262 (421)
T PRK06777 186 VERLFKAD---IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262 (421)
T ss_pred HHHHHHhc---cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCE
Confidence 66666421 011246677777677778864 5533 2 356789999999999975 2221 1111222345896
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++ +=|.+|+ =.-+|+++.++++++.+.
T Consensus 263 v~--~sK~l~~-G~pigav~~~~~i~~~~~ 289 (421)
T PRK06777 263 IT--MAKSLGG-GMPISAVVGRAEVMDAPA 289 (421)
T ss_pred Ee--eehhhcC-CCceEEEEEcHHHHhccC
Confidence 64 6787663 012788888877765554
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.8 Score=50.63 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCC-CCCCCCcEEEEcccccCCCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLG-LSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLD-Ls~l~~DFlv~S~HK~fG~~P 370 (872)
.+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-.. .-...||++++ =|.+|+
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~g-- 294 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLTS-- 294 (466)
T ss_pred CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--cccccc--
Confidence 35677777777777899888 5544 56799999999999974 3321 11111 12346998877 476664
Q ss_pred Cc---eEEEEEeCCCccccc
Q 002866 371 TG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 371 tG---vG~LyVRk~~i~~L~ 387 (872)
| +|++.+++++.+.+.
T Consensus 295 -G~~Pi~av~~~~~i~~~~~ 313 (466)
T PRK07036 295 -GYQPLGAVIISERLLDVIS 313 (466)
T ss_pred -CccccEEEEEcHHHHHHHh
Confidence 4 789999888776554
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=92.88 E-value=6.5 Score=46.37 Aligned_cols=53 Identities=6% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~ 340 (872)
.+.++++|... ..+..-|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.
T Consensus 238 l~~l~~~l~~~-----~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t 295 (464)
T TIGR00699 238 LEEVEDLIKKW-----HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQT 295 (464)
T ss_pred HHHHHHHHHhc-----CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeee
Confidence 34456666431 124666667667777899998 6544 56799999999999985
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=2 Score=49.96 Aligned_cols=82 Identities=9% Similarity=0.113 Sum_probs=55.3
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-...-...||++++ =|.+|+ |
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~g---G 287 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL--AKGITS---G 287 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE--eecccC---C
Confidence 5677777777777898877 3333 45789999999999975 3220 1112233457999887 476653 3
Q ss_pred ---eEEEEEeCCCccccc
Q 002866 373 ---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 ---vG~LyVRk~~i~~L~ 387 (872)
+|++.+++++++.+.
T Consensus 288 ~~Pi~av~~~~~i~~~~~ 305 (449)
T PRK07481 288 YVPLGATMVNARIADAFE 305 (449)
T ss_pred CcCceEEEEcHHHHHHHh
Confidence 788999888766554
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.41 Score=53.17 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
...-.+||+|=+- |..|+ -+++-.|..-+.+++ ..+.+-|++. +..|.|+.-=.+++++++
T Consensus 115 k~LE~kiAqfh~r---ED~il-ypscfdANag~feai-l~pedAvfSD-eLNhASIIdGirLckry~------------- 175 (417)
T KOG1359|consen 115 KLLESKIAQFHGR---EDTIL-YPSCFDANAGAFEAI-LTPEDAVFSD-ELNHASIIDGIRLCKRYR------------- 175 (417)
T ss_pred HHHHHHHHHHhCC---CceEE-eccccccchHHHHHh-cChhhhhhcc-ccccchhhhhhHHHhhhc-------------
Confidence 3455678887664 22344 444445555555554 3445556654 456788865556777653
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC--------CCccCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK--------DMDSLGL 350 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~--------~mipLDL 350 (872)
.++.-+++..+.... .-+.+||+-..+-.+-|-+-|++. ..+++++|+++++|-+++-|. + ..+++
T Consensus 176 h~dv~~l~~~l~~a~----k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~v 250 (417)
T KOG1359|consen 176 HVDVFDLEHCLISAC----KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEFGV 250 (417)
T ss_pred cchhHHHHHHHHHhh----hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHhCC
Confidence 245556665443221 235789999999999999999985 567899999999999986442 0 11222
Q ss_pred CCCCCcEEEEcccccCCC
Q 002866 351 SLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~ 368 (872)
. -++|.+....-|-+|+
T Consensus 251 m-~~vdiinsTLgKAlGg 267 (417)
T KOG1359|consen 251 M-GDVDIINSTLGKALGG 267 (417)
T ss_pred C-CcceehhhhhhhhhcC
Confidence 1 3577777777776664
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.3 Score=49.72 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HHH----HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QWM----ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~I----~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
+.+++.|... ...+..-|.+--+....|.+.|- +.+ +.|+++|+++++|=+|. .|.. +.-.+.-...|
T Consensus 202 ~~l~~~i~~~----~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~P 277 (459)
T PRK05965 202 AALRAKVAEL----GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVP 277 (459)
T ss_pred HHHHHHHHhc----CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCC
Confidence 4566666431 11245555555566677887764 333 35689999999999976 3320 11122233579
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|.++++ |-+|+.=.=+|++.+++++.+.+.
T Consensus 278 Div~~g--Kgl~gG~~Pi~av~~~~~i~~~~~ 307 (459)
T PRK05965 278 DLMTVA--KGLTSGYVPMGAVLMSDHVYQGIA 307 (459)
T ss_pred CeEEec--hhhccCCcceeEEEEcHHHHHHHh
Confidence 999884 655530001788888888765543
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.2 Score=51.90 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=60.1
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
++++++|... ...+...|.+--+...-|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-.+...+.|
T Consensus 205 ~~le~~~~~~----~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~P 280 (460)
T PRK06105 205 NELEALILAE----GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKP 280 (460)
T ss_pred HHHHHHHHHc----CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCC
Confidence 5566666421 1124567777667777898887 5544 46789999999999984 4320 11122334579
Q ss_pred cEEEEcccccCCCCCCc---eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~ 387 (872)
|++++ =|-+|+ | +|+++.++++.+.+.
T Consensus 281 Di~~~--gK~lgg---G~~P~~av~~~~~i~~~~~ 310 (460)
T PRK06105 281 DILVM--SKQLSS---SYQPLSAVLMNEKVYDPIA 310 (460)
T ss_pred Ceeee--eccccc---CcccceEEEEcHHHHHHHh
Confidence 98866 476553 3 788888877665544
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.5 Score=48.14 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=108.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +--.+.+.+++.+ .+ ..+.....++.++ ....+.-++++++++..-+ .|.|
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~-------ql-~~~~~~~~~~~~~--~~~~~lAe~L~~~~p~~~~--~v~f 119 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKD-------QL-DTLEHAMLAGCTH--EPAIELAERLAALTGGTLG--HAFF 119 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHH-------HH-HhcCCccccccCC--HHHHHHHHHHHHhCCCCCC--EEEE
Confidence 45789998644 4455677776433 11 1111000112222 2333455566676654322 5999
Q ss_pred eCCHHHHHHHHHhh---C---CCCCC-CeEEEecccCchhHHHHHHH----HHHcC-----cEEEEEeccCCCCc-----
Q 002866 222 TVSRGSAFKLLAES---Y---PFHTN-KKLLTMFDYESQSVNWMAQS----AKEKG-----AKVYSAWFKWPTLK----- 280 (872)
Q Consensus 222 TsnATeALnLVaes---l---pf~~G-d~ILT~~DhEHnSVl~~~~~----AkrkG-----aeV~~Vpvd~p~g~----- 280 (872)
+.++|+|+.....- + .=.+| .+||+....-|......... ..+.+ ..+..+|.......
T Consensus 120 ~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 199 (453)
T PRK06943 120 ASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGET 199 (453)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCC
Confidence 99999975543331 1 00123 35665543224432211110 00111 01233433211000
Q ss_pred ------cCHHHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhcH-HH---H-HHHHHCCcEEEeecccc-CCCC--C
Q 002866 281 ------LCSTDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYSY-QW---M-ALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 281 ------Id~edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~PL-e~---I-~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
-+.++++++|... ..+..-|.+-- +....|.+.|= +. + +.|+++|+++++|=+|. .|.. +
T Consensus 200 ~~~~~~~~~~~l~~~l~~~-----~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 200 AADVAARALADVRRLFAER-----AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 0235566666431 12455555555 35667887663 32 3 45789999999999975 3321 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.-.+.-...||++++ =|.+|+.=.=+|++.+++++.+.+
T Consensus 275 fa~~~~gv~PDivt~--gKgl~gG~~Pi~av~~~~ei~~~~ 313 (453)
T PRK06943 275 FACEQAGVWPDFLCL--SKGISGGYLPLSLVLSRDAIFAAF 313 (453)
T ss_pred hHHHhCCCCCCeEee--ehhhccCcccceEEEEcHHHHHhh
Confidence 111222457999998 465443000178888888876544
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.4 Score=48.30 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HH---H-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QW---M-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~---I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
.+.+++.+... ...+..-|.+--+....|.+.|- +. + ++|+++|+++++|=+|. .|.. +.-.+.-...
T Consensus 206 ~~~l~~~~~~~----~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~ 281 (461)
T PRK07482 206 ADELEELILAE----GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE 281 (461)
T ss_pred HHHHHHHHHhc----CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC
Confidence 45566666421 11245556665566667888663 22 3 45789999999999975 3320 1112223457
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
||++++ =|.+|+.=.-+|++++++++.+.+
T Consensus 282 PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~ 311 (461)
T PRK07482 282 PDLITV--AKGLTSAYAPLSGSIVGEKVWDVL 311 (461)
T ss_pred CCEEEE--ccccccCccccceeeecHHHHHHH
Confidence 999997 476653000157777777765444
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=3.9 Score=47.26 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=80.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|+|..+. +--.+.+.+++.+ -...+ ..+.++.. ...+.-++|++++... + .|.|
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~--------q~~~~---~~~~~~~~--~~~~la~~l~~~~p~~-~--~v~f 109 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVRE--------ALQDG---CNFTRPSA--IELDAAESFLELIDGA-D--MVKF 109 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHH--------HHHhC---cCCCCCCH--HHHHHHHHHHHhCCcc-c--eEEE
Confidence 44779998543 2334667776533 11121 12444432 2224455677776421 2 5999
Q ss_pred eCCHHHHHHHHHhh-CCCCCCC-eEEEecccC-chhHHHHHHH--HHHcCc----EEEEEeccCCCCccCHHHHHHHHhh
Q 002866 222 TVSRGSAFKLLAES-YPFHTNK-KLLTMFDYE-SQSVNWMAQS--AKEKGA----KVYSAWFKWPTLKLCSTDLRKQISS 292 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd-~ILT~~DhE-HnSVl~~~~~--AkrkGa----eV~~Vpvd~p~g~Id~edLe~~I~~ 292 (872)
+.++|||+.....- ..+ .|+ .|++...|. |. ...|..- ....|. ......+..+ +.++|+++|..
T Consensus 110 ~~sGseA~e~AlklAr~~-tgr~~i~~~~~~~~h~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----d~~~l~~~l~~ 183 (431)
T PRK06209 110 CKNGSDATSAAVRLARAY-TGRDLVARCADHPFFS-TDDWFIGTTPMSAGIPASVSALTVTFRYN----DIASLEALFED 183 (431)
T ss_pred ecCHHHHHHHHHHHHHHH-hCCCeEEEeccCcccc-ccccccccCCCCCCCChhHhccccccCCC----CHHHHHHHHHh
Confidence 99999986654431 112 244 354431111 11 0000000 000010 0001122221 57888888853
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeecccc
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~ 340 (872)
. ..+...|.+-.+..+.+..-+++. .+.|+++|+++++|-+|.
T Consensus 184 ~-----~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t 227 (431)
T PRK06209 184 H-----PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT 227 (431)
T ss_pred C-----CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 2 123556666554333333333554 456799999999999983
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=91.37 E-value=3.4 Score=47.89 Aligned_cols=220 Identities=9% Similarity=0.054 Sum_probs=103.9
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++..|||..+. +--.+.+.+++.+ -...+. +..++ ..+ +...+.-+++++++..+-+ .|.
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~--------q~~~~~-~~~~~~~~~--~~~~~la~~L~~~~p~~~~--~v~ 107 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKS--------QIDAMS-HVMFGGITH--PPAIELCRKLVAMTPQPLE--CVF 107 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHH--------HHhhcC-CccccccCC--HHHHHHHHHHHhhCCCCcC--EEE
Confidence 45789997653 3344667776533 111111 11111 122 2233445566666643222 699
Q ss_pred EeCCHHHHHHHHHh---hCC--C-CCCCeEEEecccCchhHHHHHHHH-----HHcC-----cEEEEEeccCCCC-----
Q 002866 221 FTVSRGSAFKLLAE---SYP--F-HTNKKLLTMFDYESQSVNWMAQSA-----KEKG-----AKVYSAWFKWPTL----- 279 (872)
Q Consensus 221 FTsnATeALnLVae---slp--f-~~Gd~ILT~~DhEHnSVl~~~~~A-----krkG-----aeV~~Vpvd~p~g----- 279 (872)
|+.++|||+..... .+. - ....+||+...--|.......... .+.. ..+..+|......
T Consensus 108 f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 187 (428)
T PRK07986 108 LADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWD 187 (428)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhH
Confidence 99999997665333 220 0 112456655432243322211110 0000 1122233211000
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhc----HHH-HHHHHHCCcEEEeeccccC-CCC--CccCCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLG-PKD--MDSLGL 350 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~a-G~~--mipLDL 350 (872)
.-+.+++++.|... ..+...|.+--+ +...|.+.| ++. .+.|+++|+++++|=+|.+ |.. +.-.+.
T Consensus 188 ~~d~~~l~~~l~~~-----~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~ 262 (428)
T PRK07986 188 ERDIAPFARLMAAH-----RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEH 262 (428)
T ss_pred HHHHHHHHHHHHhC-----CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecc
Confidence 01335566666421 234666666553 666676554 333 3567899999999999742 220 001123
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
....||+++ +=|-+|+.=.=+|++.+++++.+.+.
T Consensus 263 ~gv~PDi~t--~gK~l~gG~~p~~av~~~~~i~~~~~ 297 (428)
T PRK07986 263 AGIAPDILC--LGKALTGGTMTLSATLTTREVAETIS 297 (428)
T ss_pred cCCCCCEEE--echhhhCCcccCcchhchHHHHHHhh
Confidence 345688886 45655430001355566666655443
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.1 Score=48.66 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=106.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +--.+.+.+++.+. + ..+.....++.++ ....+.-++|++++....+ .|.|
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q-------l-~~l~~~~~~~~~~--~~~~~lae~L~~~~p~~~~--~v~f 121 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQ-------L-NKIAHSTLLGLAN--VPSILLAEKLIEVVPEGLK--KVFY 121 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHH-------H-HhCCCccccccCC--HHHHHHHHHHHHhCCCCCC--EEEE
Confidence 45789997543 44566777765331 1 1111000111122 2334555677777643222 6999
Q ss_pred eCCHHHHHHHHHh---hCCC---CCCC-eEEEecccCchhHHHHHHHHH----HcC-----cEEEEEeccC----CCC-c
Q 002866 222 TVSRGSAFKLLAE---SYPF---HTNK-KLLTMFDYESQSVNWMAQSAK----EKG-----AKVYSAWFKW----PTL-K 280 (872)
Q Consensus 222 TsnATeALnLVae---slpf---~~Gd-~ILT~~DhEHnSVl~~~~~Ak----rkG-----aeV~~Vpvd~----p~g-~ 280 (872)
+.++|||+..... .+.- .+|+ +||+....-|........... +.+ ..+..+|... +.+ .
T Consensus 122 ~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~ 201 (460)
T PRK06916 122 SDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGND 201 (460)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCC
Confidence 9999997665433 2210 2333 466554323443322221100 000 1123333210 000 0
Q ss_pred ------cCHHHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhc-HHHH----HHHHHCCcEEEeeccccC-CCC--C
Q 002866 281 ------LCSTDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYS-YQWM----ALAQQNHWHVLLDAGSLG-PKD--M 345 (872)
Q Consensus 281 ------Id~edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~P-Le~I----~~Are~G~~VLVDAAQ~a-G~~--m 345 (872)
-+.+.+++.|... ..+...|.+-- +....|.+.| -+.+ +.|+++|+++++|=+|.+ |.. +
T Consensus 202 ~~~~~~~~~~~l~~~l~~~-----~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 202 KAEIVKKHLEELEELLKEK-----HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred hHHHHHHHHHHHHHHHHhC-----CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 1234455555421 12455555544 4566687764 3333 356899999999999752 320 0
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.-.+.-...||++++ =|-+|+.=.-+|++.+++++.+.+
T Consensus 277 ~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~ei~~~~ 315 (460)
T PRK06916 277 FACEHENVTPDIMTA--GKGLTGGYLPIAITVTTDEIYNAF 315 (460)
T ss_pred hHHHhcCCCCCeeee--ehhhhcCccccceeeecHHHHHHh
Confidence 111222357998876 565443000178888887765543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.1 Score=47.78 Aligned_cols=94 Identities=12% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhcHH----HH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYSYQ----WM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~PLe----~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
+.+++.|... ..+...|.+-- +....|.+.|-. .+ +.|+++|+++++|=+|. .|.. +.-.+.-...
T Consensus 202 ~~le~~~~~~-----~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~ 276 (466)
T PRK07030 202 AHMEQTLAEH-----HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR 276 (466)
T ss_pred HHHHHHHHhC-----CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCC
Confidence 4456666421 22455555555 455668877632 23 45689999999999975 3320 1111223457
Q ss_pred CcEEEEcccccCCCC--CCceEEEEEeCCCcccc
Q 002866 355 PDFIITSFYRVFGFD--PTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~--PtGvG~LyVRk~~i~~L 386 (872)
||++++ =|.+|+. | +|++.+++++.+.+
T Consensus 277 PDiv~~--gKgl~gG~~P--i~av~~~~ei~~~~ 306 (466)
T PRK07030 277 PDFLCL--SKALTGGYLP--LAAVLTTDTVYQAF 306 (466)
T ss_pred CCEEee--ehhccCCccc--ceEEEecHHHHHHH
Confidence 999998 4655530 2 78888888776544
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=13 Score=43.62 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHcCc-----E
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEKGA-----K 268 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krkGa-----e 268 (872)
.+.-+++++++.... ..|.|+.++|||+.....- ..+....+||+....-|.......... .+.+. .
T Consensus 99 ~~lae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~ 176 (457)
T PRK05639 99 IRVAEKLAEISPIEN--PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPN 176 (457)
T ss_pred HHHHHHHHhhCCCCc--CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCC
Confidence 345566777665322 2699999999986654332 112223356654332244333222111 11121 2
Q ss_pred EEEEeccCCCC-c------cCHH--------HHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HH---H-HHHHH
Q 002866 269 VYSAWFKWPTL-K------LCST--------DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QW---M-ALAQQ 328 (872)
Q Consensus 269 V~~Vpvd~p~g-~------Id~e--------dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~---I-~~Are 328 (872)
+.++|...+.. . -+.+ .++..|.... ....+..-|.+--+....|.+.|- .. + +.|++
T Consensus 177 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~ 254 (457)
T PRK05639 177 VVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHV--VPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE 254 (457)
T ss_pred ceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhh--cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 44555432100 0 0122 2333332110 012346666666676777887773 32 3 45689
Q ss_pred CCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 329 NHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 329 ~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
+|+++++|=+|. .|.. +.-.+.-...||+++ +=|.+|+ =.++|+++.++++++
T Consensus 255 ~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~pi~av~~~~~i~~ 310 (457)
T PRK05639 255 HGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GMGLSGVIGRKELMD 310 (457)
T ss_pred cCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CCcceeEEehHHHHh
Confidence 999999999976 2210 001122234799988 4687653 134789999988776
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.87 Score=50.75 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=63.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHH
Q 002866 694 LDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLA 773 (872)
Q Consensus 694 Ldh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLA 773 (872)
++.+...|+..+..|.+.|.++|...|.++... .+++ ..+.++|.|++....| +....+.+.+
T Consensus 298 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-----------~~~~----~~~~~~v~~~~~~~~~--~~~~~~~~~L 360 (398)
T cd00613 298 IVYLGPEGLKEIAERAHLNANYLAKRLKEVGGV-----------LPFN----GPFFHEFVLRLPPLYG--IRAEDLAKAL 360 (398)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------ccCC----CCeeEEEEEEcCCcch--HHHHHHHHhh
Confidence 445556688889999999999999999988641 1121 2455677888753112 2233333333
Q ss_pred HHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHH
Q 002866 774 EKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAF 848 (872)
Q Consensus 774 dr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~F 848 (872)
.++||.+..-. . . +.++||+|..+++|.|||++|++.
T Consensus 361 ~~~gi~~~~~~---------~---------------------~--------~~~~lRis~~~~~t~edid~~~~~ 397 (398)
T cd00613 361 IDGGFHAPTMY---------L---------------------P--------VDGTLMIEPTETETKEELDALLEA 397 (398)
T ss_pred hhcCccccccc---------c---------------------C--------CCCeEEEEcCCCCCHHHHHHHHHh
Confidence 34555321100 0 0 124899999999999999999875
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=5.1 Score=46.68 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=50.2
Q ss_pred CceEEEEeCcc-Ccccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPVQS-RVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~vS-NvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~Pt 371 (872)
+...|.+--+. ..-|.+.| ++.+ +.|+++|+++++|=+|. .|.. +.-...-...||.+++ =|-+|+
T Consensus 199 ~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~g--- 273 (443)
T PRK07483 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTI--AKGLGA--- 273 (443)
T ss_pred ceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeee--hhhhcc---
Confidence 35444444444 34577776 3333 45789999999999976 3220 0011112346998887 465553
Q ss_pred c---eEEEEEeCCCccccc
Q 002866 372 G---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 G---vG~LyVRk~~i~~L~ 387 (872)
| +|++++++++.+.+.
T Consensus 274 G~~Pi~av~~~~~i~~~~~ 292 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIA 292 (443)
T ss_pred CccccEEEEEcHHHHHHHh
Confidence 3 788988888766554
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.97 E-value=12 Score=43.39 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=50.6
Q ss_pred CceEEEEeCccCcccchhcH-H----HHHHHHHCCcEEEeecccc-CCCCCccCCCCCC--CCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYSY-Q----WMALAQQNHWHVLLDAGSL-GPKDMDSLGLSLF--RPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PL-e----~I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~l--~~DFlv~S~HK~fG~~PtG 372 (872)
+...|.+--+....|.+.|- + ..+.|+++|++++.|=++. .+..-..+-+..+ .||.+ ++=|.+++ =.=
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G~p 295 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGA-GVP 295 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcC-CCc
Confidence 45555555566667877763 2 2356789999999999964 2221012222223 38854 56787663 122
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|+++.++++++.+.
T Consensus 296 ig~v~~~~~i~~~~~ 310 (451)
T PRK06918 296 ISGVIGRKEIMDESA 310 (451)
T ss_pred cEEEEEcHHHHhccC
Confidence 788888877665553
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.5 Score=49.35 Aligned_cols=107 Identities=13% Similarity=-0.010 Sum_probs=70.6
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQK 771 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~Vqk 771 (872)
..|++++..+ ....|++.+.++|.+.|.++.+ .++++ .++++.|.+-+. .-.-.+.++
T Consensus 290 ~al~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~------------~~~~~-----~~~iv~i~~~~~---~~~~~l~~~ 347 (407)
T PRK09064 290 ASIRHLKESN--EERERHQERAAKLKAALDAAGI------------PVMPN-----ESHIVPVMVGDP---EKCKKASDM 347 (407)
T ss_pred HHHHHHhcCH--HHHHHHHHHHHHHHHHHHHcCC------------CCCCC-----CCCEEEEEeCCH---HHHHHHHHH
Confidence 3567766654 3357788899999999988643 23332 477888877431 112234555
Q ss_pred HHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 772 LAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 772 LAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
|.+++||-++.... |. .+ .+...+|+|+++..|.||+++|++.+.+
T Consensus 348 L~~~~gi~v~~~~~--p~--------------------------~~------~~~~~lRis~~~~~t~edi~~l~~~l~~ 393 (407)
T PRK09064 348 LLEEHGIYVQPINY--PT--------------------------VP------RGTERLRITPTPFHTDEMIDHLVEALVE 393 (407)
T ss_pred HHHhCCEEEeeECC--CC--------------------------CC------CCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 66777998876211 10 00 0124799999999999999999999998
Q ss_pred hcC
Q 002866 852 FLN 854 (872)
Q Consensus 852 Fld 854 (872)
.+.
T Consensus 394 ~~~ 396 (407)
T PRK09064 394 VWA 396 (407)
T ss_pred HHH
Confidence 653
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.3 Score=47.26 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH------HHHHHHhhCCCCCCC---eEEEecccCchhHHHHHHHHHHcC
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS------AFKLLAESYPFHTNK---KLLTMFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATe------ALnLVaeslpf~~Gd---~ILT~~DhEHnSVl~~~~~AkrkG 266 (872)
..+++++-..+-+++|++ +.|.|+|.+|+.. ++|+++ .+.|+ -|+|-.- |-.. .+-|++.|
T Consensus 51 ~kii~~tes~lreLlniP-dn~~vlf~QGGGt~qFaAv~lNL~g----lK~g~~AdYiVTGsW----S~KA-~~EAkk~~ 120 (370)
T KOG2790|consen 51 AKIINDTESLLRELLNIP-DNYKVLFLQGGGTGQFAAVPLNLIG----LKHGRCADYVVTGSW----SAKA-AEEAKKYG 120 (370)
T ss_pred HHHHHHHHHHHHHHHcCC-CceeEEEEeCCCcccccccchhhhc----cccCCccceEEeccc----cHHH-HHHHHhhC
Confidence 368889999999999997 5689999965433 356655 34443 3565421 1112 24466667
Q ss_pred cEEEEEec-cCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccc-cCCC
Q 002866 267 AKVYSAWF-KWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGS-LGPK 343 (872)
Q Consensus 267 aeV~~Vpv-d~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ-~aG~ 343 (872)
.--.++|- ... -+.+...+. +. .+++.+.|-++.---+.|+-++-- ..---+|...+.|.+. ++.+
T Consensus 121 ~~~~V~~~~k~y~ygkvPd~~~---w~------~~~da~yvyyCaNETVHGVEf~~~--P~~~~~~~vlVaDmSSnflSr 189 (370)
T KOG2790|consen 121 TPNIVIPKLKSYTYGKVPDPST---WE------LNPDASYVYYCANETVHGVEFDFI--PVNDPKGAVLVADMSSNFLSR 189 (370)
T ss_pred CceEEeccccccccCcCCChhh---cc------cCCCccEEEEecCceeeceecCCC--CCCCCCCceEEEecccchhcC
Confidence 54333332 111 122322211 11 234566777766555567655421 1112357777889985 5665
Q ss_pred CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 344 DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 344 ~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|+|++++ +.+.....|-.| |.|+-+.+||++++....
T Consensus 190 ---pvDvsk~--gvi~aGAQKN~G--~aG~Tvvivr~dllg~~~ 226 (370)
T KOG2790|consen 190 ---PVDVSKF--GVIFAGAQKNVG--PAGVTVVIVRKDLLGNAL 226 (370)
T ss_pred ---Cccchhc--ceEEeccccccC--ccccEEEEEehhhhcccc
Confidence 8999977 556677899888 899999999999875443
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.9 Score=48.82 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=69.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHH
Q 002866 694 LDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLA 773 (872)
Q Consensus 694 Ldh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLA 773 (872)
+++++.. .....|++.+.++|.+.|.++.. +|+| .|+++.+.+-+. .....+.+.+
T Consensus 295 l~~~~~~--~~~~~~l~~~~~~l~~~L~~~g~------------~v~~------~~~i~~l~~~~~----~~~~~~~~~L 350 (407)
T PRK07179 295 LEVIESA--DDRRARLHANARFLREGLSELGY------------NIRS------ESQIIALETGSE----RNTEVLRDAL 350 (407)
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHcCC------------CCCC------CCCEEEEEeCCH----HHHHHHHHHH
Confidence 4544332 45668899999999999988743 4454 368888886331 2335566666
Q ss_pred HHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 774 EKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 774 dr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
.++||..+ .+|.+.. . . +-.+||+|++...|.|||+++++.+.+.+
T Consensus 351 ~~~GI~~~--~~~~p~~----------------------~--~--------~~~~lRis~~~~~t~edi~~~~~~l~~~~ 396 (407)
T PRK07179 351 EERNVFGA--VFCAPAT----------------------P--K--------NRNLIRLSLNADLTASDLDRVLEVCREAR 396 (407)
T ss_pred HHCCceEe--eecCCCC----------------------C--C--------CCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 77898732 2332210 0 0 02489999999999999999999999866
Q ss_pred Cc
Q 002866 854 NP 855 (872)
Q Consensus 854 d~ 855 (872)
+.
T Consensus 397 ~~ 398 (407)
T PRK07179 397 DE 398 (407)
T ss_pred Hh
Confidence 53
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=14 Score=43.05 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=49.0
Q ss_pred CceEEEEeC-ccCcccchhcH-HHH----HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPV-QSRVTGAKYSY-QWM----ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~-vSNvTG~i~PL-e~I----~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~S~HK~fG~~Pt 371 (872)
+..-|.+-- +.+.-|.+.|= +.+ +.|+++|+++++|=+|.+ |.. +.-...-...||++++ =|.+|+
T Consensus 199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~--gK~l~~--- 273 (447)
T PRK06917 199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTL--GKGLGA--- 273 (447)
T ss_pred ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEe--eehhcc---
Confidence 344444444 44455676663 333 456899999999999752 210 0001122346998766 587663
Q ss_pred c---eEEEEEeCCCccccc
Q 002866 372 G---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 G---vG~LyVRk~~i~~L~ 387 (872)
| +|++.+++++.+.+.
T Consensus 274 G~~Pi~a~~~~~~i~~~~~ 292 (447)
T PRK06917 274 GYTPIAATVVSDRVMEPIL 292 (447)
T ss_pred CCcceEEEEEcHHHHHHHh
Confidence 3 788888887766553
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=7.3 Score=45.88 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=51.5
Q ss_pred CceEEEEeC-ccCcccchhcHH-H---H-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPV-QSRVTGAKYSYQ-W---M-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~-vSNvTG~i~PLe-~---I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~Pt 371 (872)
+..-|.+-- +....|.+.|-. . + +.|+++|+++++|=+|. .|.. |.-.+.-...||++++ =|.+|+
T Consensus 236 ~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~g--- 310 (472)
T PRK08742 236 EICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLTG--- 310 (472)
T ss_pred ceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--cccccC---
Confidence 456666655 466678877643 3 3 45689999999999976 3320 1112223457999998 476553
Q ss_pred c---eEEEEEeCCCcccc
Q 002866 372 G---FGCLLIKKSVMGSL 386 (872)
Q Consensus 372 G---vG~LyVRk~~i~~L 386 (872)
| +|++++++++.+.+
T Consensus 311 G~~Plaav~~~~ei~~~~ 328 (472)
T PRK08742 311 GFLPLSAVLATQQLYDAF 328 (472)
T ss_pred CCCCcceeeccHHHHHHh
Confidence 3 78888887765543
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=88.80 E-value=3.4 Score=45.07 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEeecccccc
Q 002866 709 LRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGIGFLSHI 788 (872)
Q Consensus 709 ~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~G~l~~i 788 (872)
.+.+.+|+++.|.++.. .. ++++.| +++.+.|.+.+..+ .-...+.++|. ++||.++.+.
T Consensus 263 ~~~~~~~l~~~L~~~~~--------~~-~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~L~-~~gi~v~~~~---- 322 (353)
T PLN02721 263 DHKKAKLLAEGLNQIKG--------LR-VNVAAV-----ETNIVYFDITDGSR-ITAEKLCKSLE-EHGVLLMPGN---- 322 (353)
T ss_pred HHHHHHHHHHHHHhCCC--------cE-EecCCc-----cceEEEEEccCCcc-ccHHHHHHHHH-hCCcEEecCC----
Confidence 34577899999987743 11 223332 46788888864211 11234455555 7888887440
Q ss_pred cccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 789 RILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 789 ~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
...||+++++..+.+|+.++++.+.+.++.
T Consensus 323 -------------------------------------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 323 -------------------------------------SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred -------------------------------------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 127999999999999999999999987653
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.27 Score=55.69 Aligned_cols=133 Identities=16% Similarity=0.238 Sum_probs=73.1
Q ss_pred echhhhhhhhcchhhHHHHHHHHHHHHH--HHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHH
Q 002866 691 CRHLDHINMLGLNKTTCRLRFLINWLVT--SLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEV 768 (872)
Q Consensus 691 c~gLdh~d~lGl~~I~~R~r~L~~wLv~--~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~ 768 (872)
.++|..+..- |...+.-...|.+||-. ...+..||.- ...|=+++|++.. ..+|++|+||+ + |.--....
T Consensus 236 ~~~l~tl~~R-~e~~~~na~~la~~L~~~~~v~~v~~p~l---~~~p~~~l~~~~~-~g~~~~~sf~~-~--~~~~~~~~ 307 (378)
T TIGR01329 236 LRGIKTLAIR-IEKQQENARAIAMFLSTHPRVKKVRYAGL---PSHPGFHLHFSQA-KGAGSVLSFET-G--SVALSKRL 307 (378)
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHhCCCccEEECCCC---CCCccHHHHHHhC-CCcceEEEEEE-C--CHHHHHHH
Confidence 3444433322 67777778888998862 1233344432 2234456676654 36899999999 2 21112233
Q ss_pred HHHHHHHcCCeEeec----ccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHH
Q 002866 769 VQKLAEKEGISLGIG----FLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYK 844 (872)
Q Consensus 769 VqkLAdr~~IsLr~G----~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyr 844 (872)
+.+| ...+|..+.| ..+||.-..++.... + .....| +.-+.||.|.|+ ||+.-
T Consensus 308 ~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~-----~-----~~~~~g--------i~~~liR~svGl----E~~~d 364 (378)
T TIGR01329 308 VEAT-KLFSITVSFGSVNSLISMPCFMSHASIPA-----E-----VREERG--------LPEDLVRLSVGI----EDVDD 364 (378)
T ss_pred HHhC-cCcccccCCCCCCceeeCCCccccccCCH-----H-----HHHhcC--------CCCCeEEEEecc----CCHHH
Confidence 3333 4567777887 333443222221100 0 000112 236799999998 89998
Q ss_pred HHHHHHHhcC
Q 002866 845 LWAFVAKFLN 854 (872)
Q Consensus 845 l~~Fva~Fld 854 (872)
||+=+.+-|+
T Consensus 365 l~~dl~~al~ 374 (378)
T TIGR01329 365 LISDLDIAFV 374 (378)
T ss_pred HHHHHHHHHH
Confidence 9887776443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=88.43 E-value=21 Score=41.52 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=43.3
Q ss_pred ceEEEEeCccCcccchh-cHHH---H-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCC-CCc
Q 002866 302 AGLFVFPVQSRVTGAKY-SYQW---M-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFD-PTG 372 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~-PLe~---I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~-PtG 372 (872)
..+++-| +.+..|.+. |-+. + +.|+++|+++++|=+|. .|.. +...+--...||.+++ =|-+|.. |
T Consensus 208 aavi~Ep-i~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~P-- 282 (442)
T TIGR00709 208 AAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLP-- 282 (442)
T ss_pred EEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccCCcc--
Confidence 3455555 444556664 5443 3 45789999999999975 3321 1111122356898884 5755420 2
Q ss_pred eEEEEEeCC
Q 002866 373 FGCLLIKKS 381 (872)
Q Consensus 373 vG~LyVRk~ 381 (872)
+|++.++++
T Consensus 283 igav~~~~~ 291 (442)
T TIGR00709 283 LAVLLIAPE 291 (442)
T ss_pred cEEEEEchH
Confidence 677776665
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=19 Score=46.27 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh---hCCCCCCCeEEEecccCchhHHHHHHH--H--HHcCc----
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE---SYPFHTNKKLLTMFDYESQSVNWMAQS--A--KEKGA---- 267 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae---slpf~~Gd~ILT~~DhEHnSVl~~~~~--A--krkGa---- 267 (872)
..+.-+++++++-... ..|.|+.++|||+...+. .+ ....+||+....-|.....-... . ...+.
T Consensus 626 ~~elae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~ 701 (972)
T PRK06149 626 VAEFSERLAALAPDGL--DTVFLVNSGSEANDLAIRLAWAA--SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETR 701 (972)
T ss_pred HHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHh--cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCC
Confidence 3455566777763221 269999999998776554 44 22345665533224222111000 0 00000
Q ss_pred --EEEEEeccCC-CCcc---C-----HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCc
Q 002866 268 --KVYSAWFKWP-TLKL---C-----STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHW 331 (872)
Q Consensus 268 --eV~~Vpvd~p-~g~I---d-----~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~ 331 (872)
-+..++.... .+.. + .++++..+.... ....+...|.+--+....|.+.| ++.+ +.|+++|+
T Consensus 702 ~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~ 779 (972)
T PRK06149 702 PDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELD--ASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG 779 (972)
T ss_pred CCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHh--hcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence 1222222110 0111 1 234444443211 11234666666666667798888 6654 56799999
Q ss_pred EEEeecccc-CCCCCcc-C-CC--CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 332 HVLLDAGSL-GPKDMDS-L-GL--SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 332 ~VLVDAAQ~-aG~~mip-L-DL--s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.+++|=+|. .|. +-. + -. ....||.+++ =|-+|.. .-+|++.+++++.+.+.+
T Consensus 780 llI~DEV~tGfGR-tG~~~~a~e~~gv~PDivt~--gK~lg~G-~Pl~av~~~~~i~~~~~~ 837 (972)
T PRK06149 780 VCIADEVQVGYGR-LGHYFWGFEQQGVVPDIITM--AKGMGNG-HPLGAVITRREIAEALEA 837 (972)
T ss_pred EEEEEeehhcCCc-cCccchhhhhcCCCCCEEEe--cccccCC-eeeEEEEEcHHHHhhhcc
Confidence 999999983 332 111 1 11 2346998865 5766530 117999999988776653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=12 Score=43.42 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhc-HHHH----HHHHHCCcEEEeeccccC-CCC--CccCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYS-YQWM----ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLF 353 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~P-Le~I----~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l 353 (872)
.+.|++.|... ..+..-|.+--+ ....|.+.| -+.+ +.|+++|+++++|=+|.+ |.. +.-.+.-..
T Consensus 193 l~~l~~~i~~~-----~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv 267 (429)
T PRK06173 193 IEPLQDLLEQK-----GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV 267 (429)
T ss_pred HHHHHHHHHhC-----CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC
Confidence 44456666421 234666666654 666787754 3333 457899999999999842 210 111122234
Q ss_pred CCcEEEEcccccCCCCCCc---eEEEEEeCCCcccc
Q 002866 354 RPDFIITSFYRVFGFDPTG---FGCLLIKKSVMGSL 386 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L 386 (872)
.||+++ +=|-+|+ | ++++++++++.+.+
T Consensus 268 ~PDiv~--~gK~l~g---G~~p~~a~~~~~~i~~~~ 298 (429)
T PRK06173 268 VPDIMC--IGKALTG---GYLTLSATITTEAIAQTI 298 (429)
T ss_pred CCCEEE--eehhhhC---CccccceEEecHHHHHHH
Confidence 689887 5676553 3 47777777766544
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=3 Score=46.02 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEeec
Q 002866 704 KTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGIG 783 (872)
Q Consensus 704 ~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~G 783 (872)
.+..+.+...+++++.|.++ . +++|.|. .|..|-+.+-+ ...+.+++.++||.++.|
T Consensus 257 ~~~~~~~~~r~~l~~~L~~~-~-----------~~~~~p~----~g~~~~~~~~~-------~~~~~~~l~~~gI~v~~g 313 (349)
T PRK07908 257 ADAARLAADRAEMVAGLRAV-G-----------ARVVDPA----AAPFVLVRVPD-------AELLRKRLRERGIAVRRG 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC-C-----------cEeccCC----CceEEEEECCc-------HHHHHHHHHhCCEEEEEC
Confidence 35677777788888888765 2 5677653 48888887653 467888888999999877
Q ss_pred ccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 784 FLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 784 ~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
.... + . +...||+|++ +.+|+.+|++.+.+++.+
T Consensus 314 ~~f~-----------~----------------~--------~~~~vRis~~---~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 314 DTFP-----------G----------------L--------DPDYLRLAVR---PRAEVPVLVQALAEILKA 347 (349)
T ss_pred CCCC-----------C----------------C--------CCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence 4220 0 0 0237899985 889999999999997665
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=6.2 Score=43.79 Aligned_cols=98 Identities=16% Similarity=0.122 Sum_probs=60.5
Q ss_pred hhhhhhhhcchhhHHHHHHHH---HHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHH
Q 002866 693 HLDHINMLGLNKTTCRLRFLI---NWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVV 769 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~---~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~V 769 (872)
++..++.-|...+..+.+.+. ++|+..|.++.. +++|.| .|..+-+.+. +...+
T Consensus 253 a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-----------~~~~~~-----~g~f~~~~~~-------~~~~~ 309 (354)
T PRK04635 253 ATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGG-----------AKVLEG-----NGNYVLAKFD-------DVDAV 309 (354)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------ceECCC-----CCcEEEEECC-------CHHHH
Confidence 344444445555555555554 677888876532 566655 2444433332 34566
Q ss_pred HHHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHH
Q 002866 770 QKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFV 849 (872)
Q Consensus 770 qkLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fv 849 (872)
.+++.++||.++.+ .+ . + . .+.||+|+| +.||+.+|++.+
T Consensus 310 ~~~l~~~gv~v~~~--~~------~----~----------------~---------~~~lRis~~---~~e~~~~l~~al 349 (354)
T PRK04635 310 FKALWDAGIVARAY--KD------P----R----------------L---------ANCIRFSFS---NRAETDKLIGLI 349 (354)
T ss_pred HHHHHHCCEEEEEC--CC------C----C----------------C---------CCeEEEEeC---CHHHHHHHHHHH
Confidence 77778899999742 10 0 0 0 137899965 899999999999
Q ss_pred HHhc
Q 002866 850 AKFL 853 (872)
Q Consensus 850 a~Fl 853 (872)
.++.
T Consensus 350 ~~~~ 353 (354)
T PRK04635 350 RNQY 353 (354)
T ss_pred HHhc
Confidence 8853
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=11 Score=43.55 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=50.3
Q ss_pred CceEEEEeC-ccCcccchhcH-HH---H-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPV-QSRVTGAKYSY-QW---M-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~-vSNvTG~i~PL-e~---I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~S~HK~fG~~Pt 371 (872)
++.-|.+-- +....|.+.|- +. + +.|+++|+++++|=+|.+ |.. +.-.......||++++ =|.+|+.=.
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~ 277 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKALTGGFM 277 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--echhhcCcc
Confidence 355555554 35567877653 33 3 457899999999999752 220 1112223457999955 687642000
Q ss_pred ceEEEEEeCCCccccc
Q 002866 372 GFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 GvG~LyVRk~~i~~L~ 387 (872)
=+|++.+++++.+.+.
T Consensus 278 p~~av~~~~~i~~~~~ 293 (422)
T PRK05630 278 SFAATLCTDKVAQLIS 293 (422)
T ss_pred ccceeeccHHHHHHHh
Confidence 1577778888776554
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.8 Score=46.24 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=70.0
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQK 771 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~Vqk 771 (872)
..|+++... ..+..+.+.+..+|...|.++.. .++++ .|+++.+.+.+. .....+.++
T Consensus 289 aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~------------~~~~~-----~~~i~~i~~~~~---~~a~~~~~~ 346 (402)
T TIGR01821 289 ASIRHLKES--QDLRRAHQENVKRLKNLLEALGI------------PVIPN-----PSHIVPVIIGDA---ALCKKVSDL 346 (402)
T ss_pred HHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCC------------CcCCC-----CCCEEEEEeCCH---HHHHHHHHH
Confidence 356666554 45566777888899988887654 22332 477888865321 112345566
Q ss_pred HHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 772 LAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 772 LAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
|.+++||.++.... |.+ +. +...||+|+-+..|.||+++|++.+.+
T Consensus 347 L~~~~Gi~v~~~~~--p~~--------------------------~~------g~~~lRis~~~~~t~edi~~~~~~l~~ 392 (402)
T TIGR01821 347 LLNKHGIYVQPINY--PTV--------------------------PR------GTERLRITPTPAHTDKMIDDLVEALLL 392 (402)
T ss_pred HHhcCCEEEEeECC--CCC--------------------------CC------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 66778998876321 100 00 023799999999999999999999988
Q ss_pred hcC
Q 002866 852 FLN 854 (872)
Q Consensus 852 Fld 854 (872)
.++
T Consensus 393 ~~~ 395 (402)
T TIGR01821 393 VWD 395 (402)
T ss_pred HHH
Confidence 653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=24 Score=45.60 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=55.2
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCCC---CccCCCCCCCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPKD---MDSLGLSLFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~~---mipLDLs~l~~DFlv~S~HK~fG~~Pt 371 (872)
....|.+--+...-|.+.| ++.+ ++|+++|+.+++|=+|. .|.. +.-.......||.+++ =|.+|+. .
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lggG-~ 860 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGNG-H 860 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccCC-c
Confidence 4566666666667788887 4444 56799999999999985 3320 1112223457999887 5765530 1
Q ss_pred ceEEEEEeCCCccccc
Q 002866 372 GFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 GvG~LyVRk~~i~~L~ 387 (872)
=+|++..++++++.+.
T Consensus 861 Plgav~~~~ei~~~~~ 876 (1013)
T PRK06148 861 PMGAVVTTREIADSFD 876 (1013)
T ss_pred ceEEEEEcHHHHhhcc
Confidence 2899999988877664
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=85.01 E-value=6.7 Score=42.62 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHH
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKL 772 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkL 772 (872)
.|+++.. +..+..|.+.+.++|.+.|.++.. .+|++. .+.+..|.+.+ + .++..|.+.
T Consensus 245 ~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~------------~~~~~~----~~~~~~~~~~~--~--~~~~~~~~~ 302 (349)
T cd06454 245 ALEVLQG--GPERRERLQENVRYLRRGLKELGF------------PVGGSP----SHIIPPLIGDD--P--AKAVAFSDA 302 (349)
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCC------------cccCCC----CCcEEEEeCCC--h--HHHHHHHHH
Confidence 4566555 466788999999999999987632 455542 34455554432 1 234545444
Q ss_pred HHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 773 AEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 773 Adr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
+.++||.++.+.... . .. +..+||++++.+.|-+||.++++.|.+
T Consensus 303 L~~~gI~~~~~~~~~----------------~-----------~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 303 LLERGIYVQAIRYPT----------------V-----------PR-------GTARLRISLSAAHTKEDIDRLLEALKE 347 (349)
T ss_pred HHhCCceEEEecCCc----------------c-----------CC-------CCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 455599988642110 0 00 024899999999999999999998875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.63 E-value=5.5 Score=43.88 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEee
Q 002866 703 NKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI 782 (872)
Q Consensus 703 ~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~ 782 (872)
..+..+++.+..+|++.|..+. ++++. ..|+++.|.+-+ ..-...++++| .++||.++.
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~------------~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~l-~~~gI~v~~ 348 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALG------------FQLMD-----SQSAIQPLIVGD---NERALALAAAL-QEQGFWVGA 348 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------------CCcCC-----CCCCEEEEEeCC---HHHHHHHHHHH-HHCCceEec
Confidence 4567788888899998888763 23333 367889998743 11223455555 557999975
Q ss_pred cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 783 G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
+.... . ..| -.+||+|++++.|.+|++++++-+.+.|
T Consensus 349 ~~~~~------~------------------~~~----------~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 349 IRPPT------V------------------PAG----------TSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred ccCCC------C------------------CCC----------CceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 31100 0 000 1389999999999999999999887643
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=4.1 Score=46.17 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=67.9
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHH
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKL 772 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkL 772 (872)
.|++++..+.. ..|++.+.++|.+.|.++.. +++ ..+|++|.+.+-+. .-...+.++|
T Consensus 290 aL~~~~~~~~~--~~~~~~~~~~l~~~L~~~g~---------~~~--------~~~~~i~~v~~~~~---~~~~~l~~~L 347 (406)
T PRK13393 290 SVRHLKASSAE--RERHQDRVARLRARLDKAGI---------PHL--------PNPSHIVPVMVGDP---VLCKQISDEL 347 (406)
T ss_pred HHHHHhhCHHH--HHHHHHHHHHHHHHHHHcCC---------CcC--------CCCCCeEEEEeCCH---HHHHHHHHHH
Confidence 56666655433 24566778888888877643 122 13677888765321 1123345556
Q ss_pred HHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 773 AEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 773 Adr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
.+++||.++.+..-. .+. +...||+|+.+..|.||+++|++-+.++
T Consensus 348 ~~~~Gi~v~~~~~p~----------------------------~p~------g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 348 LDRYGIYVQPINYPT----------------------------VPR------GTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred HHhCCEEEEeECCCC----------------------------CCC------CCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 667899988752110 000 1237999999999999999999999987
Q ss_pred cC
Q 002866 853 LN 854 (872)
Q Consensus 853 ld 854 (872)
++
T Consensus 394 ~~ 395 (406)
T PRK13393 394 WA 395 (406)
T ss_pred HH
Confidence 54
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=84.30 E-value=22 Score=41.15 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhc-H---HH-HHHHHHCCcEEEeeccccC-CCC--CccCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYS-Y---QW-MALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLF 353 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~P-L---e~-I~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l 353 (872)
.+++++++..+ ..+...|.+-.+ +..-|.+.| . +. .+.|+++|+.+++|=+|.+ |.. +.-.+.-.+
T Consensus 194 ~~~l~~~l~~~-----~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v 268 (427)
T TIGR00508 194 ITPLAKLMELH-----SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV 268 (427)
T ss_pred HHHHHHHHHhc-----CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC
Confidence 34556666432 124566666664 666676554 2 32 3567899999999999742 220 001222234
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.||++++ =|.+++.-.=++++.+++++.+.++
T Consensus 269 ~pDi~~~--gK~l~gG~~p~~a~~~~~~~~~~~~ 300 (427)
T TIGR00508 269 VPDILCV--GKALTGGYMTLSATVTTDKVAQTIS 300 (427)
T ss_pred CCCEEEe--chhhhcCcccceEEEEcHHHHHHHh
Confidence 7898874 6766530001466777777665554
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=83.89 E-value=1.7 Score=43.77 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHhc----C----CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEe
Q 002866 201 DIKTRIMDHL----N----IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTM 247 (872)
Q Consensus 201 eARerIA~lL----g----A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~ 247 (872)
+.|+.||+++ | ++++ .|++|+|+|+|+.+++..+- .+||.|++.
T Consensus 96 ~lR~AiA~~l~~~~g~~v~~~pd--~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp 147 (153)
T PLN02994 96 NFRKAIANFMAEARGGRVKFDAD--MIVLSAGATAANEIIMFCIA-DPGDAFLVP 147 (153)
T ss_pred HHHHHHHHHHHHHhCCCCccchh--heEEcCCHHHHHHHHHHHHc-CCCCEEEEe
Confidence 4666666655 4 3454 59999999999999999884 789998765
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=83.51 E-value=7.6 Score=42.22 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEee
Q 002866 703 NKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI 782 (872)
Q Consensus 703 ~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~ 782 (872)
..+..+++.+.++|++.|.++.. +++. ..|+++.|.+-+ ..+...+++.+.++||.++.
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~~~------------~~~~-----~~~~~~~~~~~~----~~~~~~~~~~l~~~gI~v~~ 326 (360)
T TIGR00858 268 PWRREKLLALIARLRAGLEALGF------------TLMP-----SCTPIVPVIIGD----NASALALAEELQQQGIFVGA 326 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC------------ccCC-----CCCCEEEEEeCC----HHHHHHHHHHHHHCCeeEee
Confidence 45678899999999999987643 2332 357788887632 12333444445567999986
Q ss_pred cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHH
Q 002866 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFV 849 (872)
Q Consensus 783 G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fv 849 (872)
+..... . .| -..||+|++++.|-+|+.++++.+
T Consensus 327 ~~~~~~-----~-------------------~~----------~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 327 IRPPTV-----P-------------------AG----------TSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred eCCCCC-----C-------------------CC----------CceEEEEEcCCCCHHHHHHHHHhh
Confidence 421100 0 00 137999999999999999998865
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=82.35 E-value=22 Score=41.17 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=41.8
Q ss_pred CCceEEEEeCccCcccchhcH----HHH-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEc
Q 002866 300 SAAGLFVFPVQSRVTGAKYSY----QWM-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITS 361 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PL----e~I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S 361 (872)
.++..|.+..+....|.+.|- +.+ +.|+++|+++++|-+|. .|.. +...+...+.||+++++
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g 286 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG 286 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEec
Confidence 457788888888888988642 333 46799999999999987 4431 00122234579998764
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=82.26 E-value=6.8 Score=43.70 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=62.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
++..+..|++.+.+++...|.++. +.++++ .++++.+-+.+. .-...++++|. ++||.+
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~-----~~~~~~i~~~~~---~~~~~l~~~L~-~~gI~v 348 (393)
T TIGR01822 290 ASNELRDRLWANTRYFRERMEAAG------------FDIKPA-----DHPIIPVMLYDA---VLAQRFARRLL-EEGIYV 348 (393)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcC------------CCCCCC-----CCCEEEEEeCCH---HHHHHHHHHHH-HCCeeE
Confidence 356778899999999999997752 233433 356666654431 11234455555 459988
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
+ |... +.. . .+ ...||+|+++.+|.||++++++-+.+-
T Consensus 349 ~-~~~~-~~~---~-------------------~~----------~~~iRis~~~~~t~edi~~~~~~l~~~ 386 (393)
T TIGR01822 349 T-GFFY-PVV---P-------------------KG----------QARIRVQISAAHTEEQLDRAVEAFTRI 386 (393)
T ss_pred e-eeCC-CCC---C-------------------CC----------CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7 5332 100 0 00 136999999999999999999999873
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.71 E-value=15 Score=42.76 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCc
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLK 280 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~ 280 (872)
+.-++||+|+|+.. .|++..+-+.. ..++-+|. +.||-++..... +-++..=+++.+. ++.+ |..
T Consensus 143 dlE~~iakF~G~E~---aivYs~gF~ti-~S~ipafs-KrGDIi~~de~~-nfaIq~GlqlSRS---~i~~--Fkh---- 207 (467)
T KOG1358|consen 143 DLEKRIAKFMGTED---AIVYSYGFSTI-ESAIPAFS-KRGDIIFVDEAV-NFAIQKGLQLSRS---TISY--FKH---- 207 (467)
T ss_pred ccHHHHHHhhCCcc---eeeeccccchh-hhcchhhh-ccCcEEEEehhh-hHHHHHHHhhhhh---eeEE--ecC----
Confidence 45678999999954 48887765543 33444443 457666554221 1222211222222 2332 222
Q ss_pred cCHHHHHHHHhhhh-ccCCCC---C-ceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC------C-Ccc
Q 002866 281 LCSTDLRKQISSKK-RRKKDS---A-AGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK------D-MDS 347 (872)
Q Consensus 281 Id~edLe~~I~~~~-rr~~~~---~-T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~------~-mip 347 (872)
.++++|+.++.... +..+.+ . .+.+++-...-.+|.+.|+. +++...++...++||=+-+.|. . ...
T Consensus 208 ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH 287 (467)
T KOG1358|consen 208 NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEH 287 (467)
T ss_pred CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCcccccc
Confidence 36778876654332 111222 2 46778888888999999997 5677789999999997733221 0 013
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++++...+|.+++|.---++ +.|++.+-+..+...+
T Consensus 288 ~~v~~~~iDiv~~sm~~ala----s~GgFc~G~~~i~~hQ 323 (467)
T KOG1358|consen 288 FGVPITDIDIVTASMETALA----SGGGFCAGKSFIADHQ 323 (467)
T ss_pred CCCCccceeeeeeccccccc----ccCceeecceeeEeee
Confidence 45555678999999877655 3444444555543333
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=81.64 E-value=10 Score=41.55 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
+..+..+++.+...|++.|.++ | | ++++.+ .|..|.|.+-+ +...+.+.+.++||.++
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~--~------g---~~~~~~-----~g~~~~~~~~~------~~~~~~~~L~~~gI~v~ 316 (346)
T TIGR01141 259 IEKTVEEINAERERLYDGLKKL--P------G---LEVYPS-----DANFVLIRFPR------DADALFEALLEKGIIVR 316 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--C------C---CEECCC-----cCCEEEEecCC------CHHHHHHHHHHCCeEEE
Confidence 6677788888888898888865 2 1 345543 57888888753 34556666667899998
Q ss_pred ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHH
Q 002866 782 IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFV 849 (872)
Q Consensus 782 ~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fv 849 (872)
.|.... + . -+.+|+|++ +.+|+.+|++-+
T Consensus 317 ~g~~f~-----------~----------------~---------~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 317 DLNSYP-----------G----------------L---------PNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred eCCCcC-----------C----------------C---------CCeEEEecC---CHHHHHHHHHHh
Confidence 774210 0 0 137899976 899999998654
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=70 Score=37.74 Aligned_cols=93 Identities=12% Similarity=0.187 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc-HHH---H-HHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS-YQW---M-ALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P-Le~---I-~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
.+.+++++.... ....+...|.+--+...-|.+.| -.. + +.|+++|+++++|=+|. .|.. +.-.+.-...
T Consensus 215 ~~~l~~~i~~~~--~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~ 292 (464)
T PRK06938 215 LHYLENLLDDPE--SGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII 292 (464)
T ss_pred HHHHHHHHHhhc--cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC
Confidence 455666664311 01123555555556566688766 333 3 45689999999999975 3210 1112222357
Q ss_pred CcEEEEcccccCCC-CCCceEEEEEeCC
Q 002866 355 PDFIITSFYRVFGF-DPTGFGCLLIKKS 381 (872)
Q Consensus 355 ~DFlv~S~HK~fG~-~PtGvG~LyVRk~ 381 (872)
||.++++ |.+|+ =| +|+++.+++
T Consensus 293 PDiv~~g--KglggG~P--lsAv~~~~~ 316 (464)
T PRK06938 293 PDVVVLS--KAIGGSLP--LAVVVYREW 316 (464)
T ss_pred CCEEEee--ccccCCCc--eEEEeehhH
Confidence 9999984 65442 03 788888766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 872 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-06
Identities = 89/690 (12%), Positives = 173/690 (25%), Gaps = 237/690 (34%)
Query: 239 HTNKKLLTMF------DYESQSVNWMAQSAKEKGAKVYSAWFKWP-----TLKLCSTDLR 287
+ K +L++F +++ + V M +S K + TL+L T L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 288 KQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKD--- 344
KQ ++ FV + +Y+++ + S+ +
Sbjct: 74 KQEEMVQK---------FV------EEVLRINYKFLM----SPIKTEQRQPSMMTRMYIE 114
Query: 345 -MDSL--GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQS-----GQTGSG 396
D L +F + R+ P L ++++++ L+ G GSG
Sbjct: 115 QRDRLYNDNQVFAKYNV----SRL---QPY----LKLRQALL-ELRPAKNVLIDGVLGSG 162
Query: 397 MVKITPEYPLYLSDSVDGLDRLAG-VEDDES-----SDNSFWIDLGQSPLGSDNAGQLNK 450
K + +A V FW++L S
Sbjct: 163 --K-----------TW-----VALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEML 202
Query: 451 QKIASPLPPLWFSGKKNHK-----------RLSPKPTWKIYGSP----IFDDKEANLGAS 495
QK+ + P W S + L K Y + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLN------VQ 254
Query: 496 DDHHVLSFD--AAVL------SVSQDLD--RVKEVPEEEQFSGMTHNFRNNNKSSGCPRV 545
+ +F+ +L V+ L + + +T V
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-----------DEV 303
Query: 546 EEIQEEPSISKDSTGFASNSVMNGSCLNNSSSSSQHHGLANGLTSEICSEVKESAIRRET 605
+ + L+ L E+ +
Sbjct: 304 KSL------------LLK-------YLDCRPQD---------LPREVLT----------- 324
Query: 606 EGEFRLLGRREGSRYIGGRFFGLEDEHPSRGRRVSFSMEDNRKERLSHTMETGEVSVTSF 665
R L I + + + ++L+ +E S+
Sbjct: 325 -TNPRRLS------IIAESI----RDGLATWDNW----KHVNCDKLTTIIE---SSLNVL 366
Query: 666 DDEDYSSDGEYGD----GQD-----------WN---RREPEIICRHLDHINMLGLNKTTC 707
+ +Y + W + + ++ L + K
Sbjct: 367 EPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPK 422
Query: 708 RLRFLINWLVTSLLQLRFS-DSDGESRAH--LVHIYGPKIKYERGAAVAFNVRDKERG-- 762
I + L + E H +V Y ++ +
Sbjct: 423 ESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----PYLDQYF 473
Query: 763 -------LINPEVVQKLAEKEGISLGIGFLSH-IRILDSPRQQGGS--SSLDDTTLCRP- 811
L N E +++ + L FL IR + GS ++L +P
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 812 -MDNGRHDGKGGFIRVEVVTASLGFLTNFE 840
DN +V A L FL E
Sbjct: 534 ICDNDPKYE-------RLVNAILDFLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 7e-04
Identities = 76/544 (13%), Positives = 155/544 (28%), Gaps = 161/544 (29%)
Query: 5 LWKPIS-HCAALILDKK---SSRRKDGSDSTVDIKRNPSILRKLEEHRLREALEEASEDG 60
L PI + + R + +D+ V K N + R +LR+AL E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAK 151
Query: 61 SLF--------KS-------QDIESEPLANQDE----SLGRSRS-------LARLHAQRE 94
++ K+ + + + + +L S L +L Q
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQ-- 208
Query: 95 FLRATALAAERVFETEESIPDLSEAFSKFLTMYPKYQSS--------------------- 133
++ + I + + L Y++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 134 ------DK--IDQLRANEYLHLSPKVCLDYCGF------GLFS-YI---------QTLHY 169
K D L A H+S L Y+ + L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVL-- 323
Query: 170 WESSTFSLSEITANLSNHA------LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTV 223
++ LS I ++ + + +K + I++ + + L E
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSL-NVLEPAEYR------- 372
Query: 224 SRGSAFKLLAESYPFHTN--KKLLTMF-----DYESQSVNWMAQSAKEKGAKVYSAWFKW 276
F L+ +P + LL++ + V + + K YS K
Sbjct: 373 ---KMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHK------YSLVEKQ 420
Query: 277 P-----TLKLCSTDLRKQISSKK---RRKKDSAAGLFVFPVQSRVTGA--KYSYQWMALA 326
P ++ +L+ ++ ++ R D F + +Y Y +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-- 478
Query: 327 QQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFY----RVFGFDPTGFGCLLIKKSV 382
H L + ++LFR F+ F R G +L +
Sbjct: 479 ----HH-------LKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NT 523
Query: 383 MGSLQNQSGQTGSGMVKITPEYPLYLSDSVDGLDRLAGVEDDESSDNSFWIDLGQSPLGS 442
+ L+ + P+Y ++ +D L ++ E+ S + DL + L +
Sbjct: 524 LQQLKFYKPY----ICDNDPKYERLVNAILDFLPKIE-----ENLICSKYTDLLRIALMA 574
Query: 443 DNAG 446
++
Sbjct: 575 EDEA 578
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 872 | |||
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.95 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.94 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.94 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.94 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.94 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.94 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.93 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.93 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.93 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.92 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.92 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.92 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.92 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.92 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.92 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.92 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.91 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.9 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.9 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.9 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.89 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.87 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.87 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.87 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.86 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.85 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.85 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.84 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.84 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.83 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.83 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.83 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.82 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.8 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.78 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.78 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.78 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.77 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.77 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.75 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.75 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.74 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.73 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.73 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.72 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.71 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.69 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.68 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.67 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.67 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.66 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.65 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.65 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.65 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.65 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.65 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.65 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.65 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.64 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.64 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.63 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.63 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.63 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.63 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.63 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.62 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.62 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.61 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.61 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.61 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.6 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.59 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.59 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.59 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.59 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.59 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.58 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.58 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.58 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.58 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.58 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.57 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.57 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.57 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.57 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.56 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.56 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.56 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.56 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.55 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.55 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.55 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.55 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.55 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.55 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.55 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.54 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.54 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.54 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.54 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.54 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.53 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.53 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.53 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.53 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.52 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.52 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.51 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.51 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.51 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.51 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.51 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.51 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.5 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.5 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.5 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.5 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.5 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.5 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.5 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.5 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.49 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.49 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.48 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.47 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.47 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.47 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.46 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.46 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.45 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.45 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.45 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.44 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.44 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.44 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.44 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.43 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.43 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.43 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.43 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.43 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.42 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.42 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.42 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.41 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.41 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.41 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.41 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.4 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.4 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.4 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.4 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.39 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.39 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.39 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.38 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.36 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.36 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.35 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.35 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.33 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.33 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.33 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.32 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.32 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.32 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.32 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.32 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.3 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.3 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.28 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.26 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.26 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.24 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.24 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.24 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.22 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.19 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.18 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.17 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.14 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.14 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.13 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.13 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.13 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.13 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.12 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.08 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 98.64 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.05 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.03 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.02 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.02 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 98.98 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 98.97 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 98.93 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.9 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 98.87 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.86 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 98.84 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.84 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.83 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.81 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.81 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 98.75 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.73 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.71 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 98.71 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.71 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.66 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 98.62 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 98.61 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 98.58 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 98.47 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.19 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 97.46 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.12 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.12 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 97.8 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.49 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 96.23 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 94.52 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 93.48 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 93.31 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 93.08 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 92.9 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 91.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 91.66 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 91.63 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 90.6 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 90.11 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 89.81 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 89.76 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 89.7 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 89.44 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 89.09 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 88.94 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 88.51 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 88.46 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 88.45 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 88.44 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 88.34 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 88.28 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 88.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 87.67 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 87.42 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 87.34 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 87.1 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 87.07 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 87.02 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 86.75 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 86.53 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 86.15 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 85.75 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 85.1 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 85.05 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 85.02 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 84.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 84.8 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 84.69 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 84.62 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 84.3 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 84.2 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 83.76 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 82.43 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 82.13 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 82.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 81.93 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 81.81 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 81.52 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 81.36 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 81.34 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 80.86 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 80.53 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 80.28 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 80.17 |
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=321.15 Aligned_cols=202 Identities=14% Similarity=0.087 Sum_probs=154.1
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-----------hHHHHHHHHHHHHHhcCCCCCCCc
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-----------KGTVEHDIKTRIMDHLNIPENEYG 218 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-----------S~~~ieeARerIA~lLgA~~dEY~ 218 (872)
.+|||++|++++|+.|++++.+. + .. .++||. ..+.++++|+.||++||++ ++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~--~--~~---------~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~-~~~e 92 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQE--L--CD---------WHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIP-SNYK 92 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC------------------------------------CCHHHHHHHHHHHTCC-TTEE
T ss_pred cCccccCCCCCCCHHHHHHHHHH--H--Hh---------ccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCce
Confidence 58999999999999999987541 1 11 123332 2467899999999999995 3457
Q ss_pred EEE-eCCHHHHHHHHHhhCCCCCCCeEE-EecccCchhHHHHHHHHHHcCcEEEEEecc-CCCCc-cCHHHHHHHHhhhh
Q 002866 219 LVF-TVSRGSAFKLLAESYPFHTNKKLL-TMFDYESQSVNWMAQSAKEKGAKVYSAWFK-WPTLK-LCSTDLRKQISSKK 294 (872)
Q Consensus 219 VVF-TsnATeALnLVaeslpf~~Gd~IL-T~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd-~p~g~-Id~edLe~~I~~~~ 294 (872)
|+| |+|+|+|+|+++.++ +++|++++ +... |-+- .|...+++.| +|.+++++ ...+. +++++++.+|
T Consensus 93 vif~t~~~T~a~n~ai~~l-~~~gd~v~~~~~~--~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l---- 163 (386)
T 3qm2_A 93 VLFCHGGGRGQFAGVPLNL-LGDKTTADYVDAG--YWAA-SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQL---- 163 (386)
T ss_dssp EEEEESCTTHHHHHHHHHH-CTTCCEEEEEESS--HHHH-HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCC----
T ss_pred EEEEcCCchHHHHHHHHhc-cCCCCeEEEEeCC--HHHH-HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhc----
Confidence 999 699999999999998 57888864 3322 2222 4666788889 99999997 11243 5666664433
Q ss_pred ccCCCCCceEEEEeCccCcccch-hcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCce
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAK-YSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGF 373 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i-~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGv 373 (872)
+++|+||+++|.+|.||++ +|++.|. +|++++|||+|++|+ +|+|+++++ ++++|+|||+| |.|+
T Consensus 164 ----~~~t~lV~~~h~et~tG~~i~pi~~i~----~g~~~~vDa~qs~g~--~pidv~~~~--~~~~s~hK~lG--P~G~ 229 (386)
T 3qm2_A 164 ----SDNAAYLHYCPNETIDGIAIDETPDFG----PEVVVTADFSSTILS--APLDVSRYG--VIYAGAQKNIG--PAGL 229 (386)
T ss_dssp ----CTTCSCEEECSEETTTTEECCCCCCCC----TTCCEEEECTTTTTS--SCCCGGGCS--EEEEETTTTTC--CTTE
T ss_pred ----CCCCcEEEEECCcCCcCEecCchhhhc----CCCEEEEEcccccCC--CCCCccccC--EEEEecccccC--CCcc
Confidence 3469999999999999996 9997654 799999999999998 799999885 57799999997 8999
Q ss_pred EEEEEeCCCcccccC
Q 002866 374 GCLLIKKSVMGSLQN 388 (872)
Q Consensus 374 G~LyVRk~~i~~L~P 388 (872)
|+||+|++.++.++|
T Consensus 230 g~l~v~~~~~~~~~~ 244 (386)
T 3qm2_A 230 TLVIVREDLLGKAHE 244 (386)
T ss_dssp EEEEEEGGGCSCCCT
T ss_pred EEEEECHHHHhhhcc
Confidence 999999998766654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=314.49 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=157.8
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-----------hHHHHHHHHHHHHHhcCCCCCCCc
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-----------KGTVEHDIKTRIMDHLNIPENEYG 218 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-----------S~~~ieeARerIA~lLgA~~dEY~ 218 (872)
.--||.|+++|+|+.|++++.+. +. ..++|+. ..+.++++|++|+++||+++ +|+
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~~-----------~~--~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-~~e 78 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQKE-----------LL--DYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-NYK 78 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHHT-----------SS--SGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-TEE
T ss_pred cccccccccCCCCHHHHHHHHHH-----------HH--hcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CCe
Confidence 34799999999999999986541 11 1233332 34789999999999999964 467
Q ss_pred EEE-eCCHHHHHHHHHhhCCC-CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 219 LVF-TVSRGSAFKLLAESYPF-HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 219 VVF-TsnATeALnLVaeslpf-~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
|+| |+|+|+|+|+++.++.. ++||++++.. .+|-+ ..|.+.+++.|+.+.++++++. ..+++++++..
T Consensus 79 vif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~-~g~~~-~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~------- 148 (377)
T 3e77_A 79 VIFLQGGGCGQFSAVPLNLIGLKAGRCADYVV-TGAWS-AKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWN------- 148 (377)
T ss_dssp EEEESSHHHHHHHHHHHHHGGGSTTCEEEECC-CSHHH-HHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCC-------
T ss_pred EEEEcCchHHHHHHHHHhccCCCCCCeEEEEE-CCHHH-HHHHHHHHHhCCceEEeccCCC-cCCCCChHHhc-------
Confidence 999 58999999999999753 3588875432 12333 3567788889999988888764 33455544322
Q ss_pred CCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
.+++|+||+++|.+|.||+++|+ .++++|++++|||+|++|+ +|+|+++++ ++++|+|||+| |.|+|+|
T Consensus 149 -i~~~t~lV~~~h~et~tG~~~pi----i~~~~~~~~~vD~~q~~g~--~~id~~~~~--~~~~s~~K~~g--p~G~g~l 217 (377)
T 3e77_A 149 -LNPDASYVYYCANETVHGVEFDF----IPDVKGAVLVCDMSSNFLS--KPVDVSKFG--VIFAGAQKNVG--SAGVTVV 217 (377)
T ss_dssp -CCTTCSCEEEESEETTTTEECSS----CCCCTTCCEEEECTTTTTS--SCCCGGGCS--EEEEEGGGTTS--CTTCEEE
T ss_pred -cCCCccEEEEeCccCchheEchh----hhccCCCEEEEEcccccCC--CCCchhhcC--EEEEecccccC--CCccEEE
Confidence 23579999999999999999999 3678999999999999998 799999876 58999999997 8999999
Q ss_pred EEeCCCcccccC
Q 002866 377 LIKKSVMGSLQN 388 (872)
Q Consensus 377 yVRk~~i~~L~P 388 (872)
|+|++.++.++|
T Consensus 218 ~~~~~~l~~~~~ 229 (377)
T 3e77_A 218 IVRDDLLGFALR 229 (377)
T ss_dssp EEETTSCSCCCT
T ss_pred EEcHHHHhhccC
Confidence 999998765543
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-32 Score=295.53 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=153.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-----------hHHHHHHHHHHHHHhcCCCCCCCc
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-----------KGTVEHDIKTRIMDHLNIPENEYG 218 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-----------S~~~ieeARerIA~lLgA~~dEY~ 218 (872)
.+|+=++|++++|+.|++++.+. +. ..++||. ..+.++++|+.|+++||+++ +++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~-----------~~--~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-~~~ 70 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKE-----------LC--DYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-DYE 70 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHT-----------SS--SGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-TEE
T ss_pred ceEeecCCCCCCcHHHHHHHHHH-----------HH--hcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-Cce
Confidence 57888899999999999986431 11 1223332 34789999999999999964 357
Q ss_pred EEE-eCCHHHHHHHHHhhCCCCCCCeE--EEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCc-cCHHHHHHHHhhhh
Q 002866 219 LVF-TVSRGSAFKLLAESYPFHTNKKL--LTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLK-LCSTDLRKQISSKK 294 (872)
Q Consensus 219 VVF-TsnATeALnLVaeslpf~~Gd~I--LT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~-Id~edLe~~I~~~~ 294 (872)
|+| |+|+|+|+|+++.++. +|+++ ++...++| .|.+.+++.|++|+++++++.... +++++ + |.
T Consensus 71 v~f~t~~~T~a~n~~~~~~~--~~~~~~~i~~~~~~~----~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~--- 138 (361)
T 3m5u_A 71 VLFLQGGASLQFAMIPMNLA--LNGVCEYANTGVWTK----KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS--- 138 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHC--CSSCEEEEECSHHHH----HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC---
T ss_pred EEEEcCcHHHHHHHHHHhcC--CCCeEEEEeCCHHHH----HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cC---
Confidence 999 9999999999999975 56753 33334444 455667888999999999985321 34444 2 43
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceE
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFG 374 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG 374 (872)
++|+||+++|.+|.||+++|. | ++ +|++++|||+|++|+ +|+|+++ +||+++|+|||+| |.|+|
T Consensus 139 -----~~t~lv~~~~~e~~tG~~~~~--i--~~-~~~~~~vD~~q~~g~--~~id~~~--~d~~~~s~~K~~g--p~G~g 202 (361)
T 3m5u_A 139 -----DNADYAYICSNNTIYGTQYQN--Y--PK-TKTPLIVDASSDFFS--RKVDFSN--IALFYGGVQKNAG--ISGLS 202 (361)
T ss_dssp -----TTSSEEEEESEETTTTEECSS--C--CC-CSSCEEEECGGGTTS--SCCCCTT--EEEEEEETTTTSS--CTTCE
T ss_pred -----CCCCEEEEeCCCCCcceeCCc--c--cc-cCCEEEEEcccccCC--CCCCccc--CCEEEEechhccC--CCccE
Confidence 368999999999999999883 2 23 499999999999998 7999985 7999999999997 89999
Q ss_pred EEEEeCCCcccccC
Q 002866 375 CLLIKKSVMGSLQN 388 (872)
Q Consensus 375 ~LyVRk~~i~~L~P 388 (872)
+||+|++.++.++|
T Consensus 203 ~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 203 CIFIRKDMLERSKN 216 (361)
T ss_dssp EEEEEHHHHHHHHT
T ss_pred EEEEcHHHHhhhcC
Confidence 99999998877765
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=263.49 Aligned_cols=225 Identities=19% Similarity=0.210 Sum_probs=181.9
Q ss_pred hHHHHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHH
Q 002866 135 KIDQLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVE 199 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~i 199 (872)
++..+|+ +||.++. ++|||+++.++.|+.+++++.+ .... .++|++ ....+
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~ 69 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE--------FYRH-----GYAAVHRGIHTLSAQATEKM 69 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHH--------HHHH-----TCCCCSSCSSHHHHHHHHHH
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHH--------HHHh-----hcCCCCCCcchHHHHHHHHH
Confidence 4778896 6999864 8999999999999998887532 1111 122322 23567
Q ss_pred HHHHHHHHHhcCC-CCCCCcEEEeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHLNI-PENEYGLVFTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lLgA-~~dEY~VVFTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpv 274 (872)
.++|++||+++|+ +++ .|+||+|+|+|+++++.++. +++|++|++... .|.++ ..+...++..|+++..+|+
T Consensus 70 ~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 146 (406)
T 1kmj_A 70 ENVRKRASLFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQM-EHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_dssp HHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETT-CCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred HHHHHHHHHHcCCCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecc-cchHHHHHHHHHHHhCCCEEEEEec
Confidence 8999999999999 444 69999999999999999984 688999887643 34444 4566667778999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+. ++.++.++|+++|.. ++++|++++.+|.||.++|++ +++.|+++|+++++|+++..|. .++++...
T Consensus 147 ~~-~~~~d~~~l~~~l~~--------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~--~~~~~~~~ 215 (406)
T 1kmj_A 147 NP-DGTLQLETLPTLFDE--------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDVQAL 215 (406)
T ss_dssp CT-TSCBCGGGHHHHCCT--------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHH
T ss_pred CC-CCCcCHHHHHHHhcc--------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC--CCCccccc
Confidence 75 577899999888752 589999999999999999997 4577899999999999999886 57777777
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++|++++|+||+|| |.|+|+++++++.++.+.+.
T Consensus 216 ~~d~~~~s~~K~~g--~~G~G~~~~~~~~~~~~~~~ 249 (406)
T 1kmj_A 216 DCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPW 249 (406)
T ss_dssp TCSEEEEEGGGTTS--CTTCEEEEECHHHHHHCCCS
T ss_pred CCCEEEEEchhccC--CCCcEEEEEeHHHHhhcCCc
Confidence 89999999999997 77999999998888777654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=280.71 Aligned_cols=237 Identities=15% Similarity=0.088 Sum_probs=178.5
Q ss_pred hHHHHHhhcccCCC----------------CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHH
Q 002866 135 KIDQLRANEYLHLS----------------PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGT 197 (872)
Q Consensus 135 ~ID~lR~~EFP~L~----------------~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~ 197 (872)
.+..+|+ +|+... +.+|||+++.++.|+.+.+++.+. +..+...... ..+ +.+....
T Consensus 38 ~l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~----l~~~~~~~~~-~~~~~~~~~~~ 111 (465)
T 3e9k_A 38 KLRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEE----LDKWAKIAAY-GHEVGKRPWIT 111 (465)
T ss_dssp TTGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHH----HHHHHHHGGG-GGTSSSSCGGG
T ss_pred cHHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHH----HHHHHhhCCc-ccccCCccHHH
Confidence 3556775 687764 479999999999998886664331 1122211110 111 1122234
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC--CCCCCCeEEEecccCchhHH-HHHHHHHHcCcEE-----
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY--PFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKV----- 269 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl--pf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV----- 269 (872)
..+++|+++|+++|++++ .|+||+|+|+++++++.++ |..++++||+.. ..|.+.. .+...++..|+++
T Consensus 112 ~~~~l~~~la~~~g~~~~--~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~-~~~~s~~~~~~~~~~~~G~~~~~~~v 188 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEA-KAFPSDHYAIESQLQLHGLNIEESMR 188 (465)
T ss_dssp TTHHHHGGGHHHHTCCGG--GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEET-TCCHHHHHHHHHHHHHTTCCHHHHEE
T ss_pred hHHHHHHHHHHHcCCCcC--CEEEECCHHHHHHHHHHHhccccCCCCEEEEcC-CcCCchHHHHHHHHHHcCCcceeeeE
Confidence 556789999999999876 4999999999999999987 445566687764 3455554 3555677789874
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
..+|.+. ++.++.++|+++|... ++++++|++++++|.||+++|++. .+.|+++|++|++|++|++|. +++
T Consensus 189 ~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~--~~~ 260 (465)
T 3e9k_A 189 MIKPREG-EETLRIEDILEVIEKE-----GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGN--VEL 260 (465)
T ss_dssp EECCCTT-CSSCCHHHHHHHHHHH-----GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCC
T ss_pred EEecCCC-CCccCHHHHHHHHHhc-----CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCC--cCC
Confidence 4445543 5778999999999742 125899999999999999999984 567899999999999999997 789
Q ss_pred CCCCCCCcEEEEcccccC-CCCCCceEEEEEeCCCcccccCC
Q 002866 349 GLSLFRPDFIITSFYRVF-GFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~f-G~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++..+++||+++|+||++ |+ |.|+|++|++++.++.+.+.
T Consensus 261 ~~~~~~~D~~~~s~~K~l~~g-p~~~g~l~~~~~~~~~~~~~ 301 (465)
T 3e9k_A 261 YLHDWGVDFACWCSYKYLNAG-AGGIAGAFIHEKHAHTIKPA 301 (465)
T ss_dssp CHHHHTCCEEEECSSSTTCCC-TTCCCEEEECGGGTTTSCCS
T ss_pred chhhcCCCEEEECcccccccC-CCceEEEEEcHHHHhhcCCc
Confidence 998899999999999998 45 88999999999988777654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=264.30 Aligned_cols=224 Identities=18% Similarity=0.129 Sum_probs=179.5
Q ss_pred hHHHHHhhcccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc--------hHHHHHHHHHH
Q 002866 135 KIDQLRANEYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE--------KGTVEHDIKTR 205 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps--------S~~~ieeARer 205 (872)
+++.+|+ +||.+++ ++|||+++.++.|+.+++++.+ .+. . .++||+ ....++++|+.
T Consensus 12 ~~~~~r~-~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~-------~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (406)
T 3cai_A 12 DVARVRG-LHPSLGDGWVHFDAPAGMLIPDSVATTVST-------AFR-R-----SGASTVGAHPSARRSAAVLDAAREA 77 (406)
T ss_dssp CHHHHHH-TCTTTTSSCEECBGGGCCCCCHHHHHHHHH-------HHH-H-----CCSSSCSSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-hhhhcCCCeEEEeCCCcCCCCHHHHHHHHH-------HHH-h-----cCCCCCCccHHHHHHHHHHHHHHHH
Confidence 6888996 6999986 9999999999999999887543 121 1 122221 23578899999
Q ss_pred HHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC--CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccCCCCccC
Q 002866 206 IMDHLNIPENEYGLVFTVSRGSAFKLLAESY--PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKWPTLKLC 282 (872)
Q Consensus 206 IA~lLgA~~dEY~VVFTsnATeALnLVaesl--pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~p~g~Id 282 (872)
+++++|++++ .|+||+|+|+|+.+++.++ .+++|++|++.. .+|.++ ..+...+++.|++++.++++..++.++
T Consensus 78 la~~~g~~~~--~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~-~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d 154 (406)
T 3cai_A 78 VADLVNADPG--GVVLGADRAVLLSLLAEASSSRAGLGYEVIVSR-LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELP 154 (406)
T ss_dssp HHHHHTCCGG--GEEEESCHHHHHHHHHHHTGGGGBTTCEEEEET-TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCC
T ss_pred HHHHhCCCCC--eEEEeCChHHHHHHHHHHHhhccCCCCEEEEcC-CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcC
Confidence 9999999765 5999999999999999887 467899988764 345554 445555666799999999874467889
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEc
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITS 361 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S 361 (872)
.++|+++|.. ++++|++++.+|.||.++|++. ++.|+++|+++++|++|..|. .++++..+++|++++|
T Consensus 155 ~~~l~~~l~~--------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s 224 (406)
T 3cai_A 155 TWQWESLISK--------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY--RLLDIRETDADVVTVN 224 (406)
T ss_dssp GGGHHHHCCT--------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTT--CCCCHHHHCCSEEEEE
T ss_pred HHHHHHHhCC--------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCCCchhcCCCEEEee
Confidence 9999888742 5899999999999999999974 567899999999999999886 5778777889999999
Q ss_pred ccccCCCCCCceE-EEEEeCCCcccccC
Q 002866 362 FYRVFGFDPTGFG-CLLIKKSVMGSLQN 388 (872)
Q Consensus 362 ~HK~fG~~PtGvG-~LyVRk~~i~~L~P 388 (872)
+||+|| |. +| +++++++.++.+++
T Consensus 225 ~~K~~g--~~-~G~~~~~~~~~~~~l~~ 249 (406)
T 3cai_A 225 AHAWGG--PP-IGAMVFRDPSVMNSFGS 249 (406)
T ss_dssp GGGGTS--CS-CEEEEESCHHHHHTSCC
T ss_pred hhhhcC--CC-cCeEEEEehHHHhhcCC
Confidence 999988 64 88 99988876655543
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=249.62 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=167.1
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+|||||+++++.|+.+++++.+ .... .++||+. ...++++|+.+++++|++++ .|+|
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~ 65 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLP--------YMTE-----SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVF 65 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHH--------HHHT-----SCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE--EEEE
T ss_pred CEeecCCCcCCCCHHHHHHHHH--------HHHh-----hcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC--eEEE
Confidence 5899999999999999887543 1111 3444432 35778999999999999865 5999
Q ss_pred eCCHHHHHHHHHhhCCC---CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESYPF---HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaeslpf---~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+.+++.++.+ ++|++|++. +.+|.+.......+++.|+++..+|++. ++.++.++|+++|..
T Consensus 66 ~~g~~~a~~~~~~~~~~~~~~~gd~vi~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~------ 137 (382)
T 4hvk_A 66 TSGATEANNLAIIGYAMRNARKGKHILVS-AVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRD------ 137 (382)
T ss_dssp ESSHHHHHHHHHHHHHHHHGGGCCEEEEE-TTCCHHHHHHHHHHHHTTCEEEEECBCT-TSCBCHHHHHHHCCT------
T ss_pred ECCchHHHHHHHHHhhhhhcCCCCEEEEC-CCCcHHHHHHHHHHHhcCCEEEEeccCC-CCCcCHHHHHHHhcc------
Confidence 99999999999988754 789998876 3456777665556677899999999985 578999999988753
Q ss_pred CCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
++++|++++.+|.||.+.|++ +++.|+++|+ +++|++|+.|. .++++...++|++++|+||++| |.|+|+++
T Consensus 138 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~g~g~~~ 210 (382)
T 4hvk_A 138 --DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGALW 210 (382)
T ss_dssp --TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT--BCCCHHHHTCSEEEEESGGGTS--CTTCEEEE
T ss_pred --CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC--CCCCchhcCCCEEEEeHHHhcC--CCceEEEE
Confidence 589999999999999999998 4567899999 99999999886 5788877889999999999987 77999999
Q ss_pred EeCCC
Q 002866 378 IKKSV 382 (872)
Q Consensus 378 VRk~~ 382 (872)
++++.
T Consensus 211 ~~~~~ 215 (382)
T 4hvk_A 211 IRKEA 215 (382)
T ss_dssp EETTC
T ss_pred EcCcc
Confidence 98864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=247.80 Aligned_cols=225 Identities=18% Similarity=0.189 Sum_probs=179.2
Q ss_pred hHHHHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc---------hHHHH
Q 002866 135 KIDQLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE---------KGTVE 199 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps---------S~~~i 199 (872)
.+..+|+ +||.++. ++|||++..++.|+.+++++.+ .+ .. ..+|++ ....+
T Consensus 9 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~-------~~-~~-----~~~~~~~~~~~y~~~~~~~~ 74 (420)
T 1t3i_A 9 LAATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMH-------YY-EN-----DNANVHRGAHQLSVRATDAY 74 (420)
T ss_dssp HHHHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHH-------HH-HH-----TCCCC--CCSHHHHHHHHHH
T ss_pred HHHHHHH-hCCccccccCCCceEEecCCccCCCCHHHHHHHHH-------HH-Hh-----ccCCCCcccchHHHHHHHHH
Confidence 4567775 7999977 8999999999999998887533 12 11 112222 12567
Q ss_pred HHHHHHHHHhcCC-CCCCCcEEEeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHLNI-PENEYGLVFTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lLgA-~~dEY~VVFTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpv 274 (872)
.++|+.||+++|+ +++ .|+||+|+|+|+.+++.++. +++|++|++... .|.++ ..+...++..|++++.+|+
T Consensus 75 ~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~-~~~~~~~~~~~~~~~~g~~~~~v~~ 151 (420)
T 1t3i_A 75 EAVRNKVAKFINARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVM-EHHSNLVPWQMVAAKTGAVLKFVQL 151 (420)
T ss_dssp HHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETT-CCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred HHHHHHHHHHcCCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcc-hhHHHHHHHHHHHHhcCcEEEEecc
Confidence 8999999999999 554 59999999999999999983 678999887643 34443 3455667778999999999
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+. ++.++.++|+++|.. ++++|.+++.+|.||.++|++. ++.|+++|+++++|+++..|. .++++..+
T Consensus 152 ~~-~~~~d~~~l~~~l~~--------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~ 220 (420)
T 1t3i_A 152 DE-QESFDLEHFKTLLSE--------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDVQLI 220 (420)
T ss_dssp CT-TSSBCHHHHHHHCCT--------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHH
T ss_pred CC-CCCcCHHHHHHhhCC--------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC--ccCchhhc
Confidence 74 577899999888752 5899999999999999999974 567899999999999999886 46777778
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
++|++++|+||++| |.|+|+++++++.++.+.+.
T Consensus 221 ~~di~~~s~sK~~~--~~g~G~~~~~~~~~~~~~~~ 254 (420)
T 1t3i_A 221 DCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPF 254 (420)
T ss_dssp TCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCC
T ss_pred CCCEEEEehhhhcC--CCceEEEEEchHHHhhcCce
Confidence 89999999999887 77899999998887777653
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=246.55 Aligned_cols=232 Identities=14% Similarity=0.149 Sum_probs=176.3
Q ss_pred hHHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc---CCCchHHHHHHHHHHHHHhcC
Q 002866 135 KIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY---GGAEKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y---gNpsS~~~ieeARerIA~lLg 211 (872)
.++.+|+ +||.+++.+|||+++.++.|+.+++++.+ .+... .....+ .-+.......++|++|++++|
T Consensus 3 ~~~~~r~-~f~~~~~~i~l~~~~~~~~~~~v~~a~~~-------~~~~~-~~~~~~~~~~y~~~~~~~~~l~~~la~~~g 73 (390)
T 1elu_A 3 MITPSLH-QFPGLANKTYFNFGGQGILPTVALEAITA-------MYGYL-QENGPFSIAANQHIQQLIAQLRQALAETFN 73 (390)
T ss_dssp --------CCGGGTTSEECCTTTCCCCCHHHHHHHHH-------HHHHH-HHHCSSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHH-hcCCCCCeEEecCCccCCCCHHHHHHHHH-------HHHHH-hccCCcchhhHHHHHHHHHHHHHHHHHHcC
Confidence 4677885 79999889999999999999888887543 11111 000000 001112567899999999999
Q ss_pred CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHH
Q 002866 212 IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQ 289 (872)
Q Consensus 212 A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~ 289 (872)
++++ .|+||+|+|+|+.+++.++.+++|++|++... .|.+.. .+...++..|++++.+|++. .+..++.++|+++
T Consensus 74 ~~~~--~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 150 (390)
T 1elu_A 74 VDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDC-EHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANH 150 (390)
T ss_dssp SCGG--GEEEESSHHHHHHHHHHHSCCCTTCEEEEETT-CCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTT
T ss_pred CCHH--HEEEeCChHHHHHHHHhCCCCCCCCEEEEecC-cccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHh
Confidence 9775 59999999999999999987789999887643 445543 35555677899999999862 2456788888766
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHH----HCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccc
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQ----QNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYR 364 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Ar----e~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK 364 (872)
|. +++++|.+++.+|.||.++|++. .+.|+ ++|+++++|+++..|. .++++...++|++++|+||
T Consensus 151 i~--------~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~--~~~~~~~~~~d~~~~s~~K 220 (390)
T 1elu_A 151 LG--------PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVDYYAFTGHK 220 (390)
T ss_dssp CC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCSEEEEESSS
T ss_pred cC--------CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC--cCCChhhcCCCEEEccccc
Confidence 64 25899999999999999999975 56788 9999999999999886 5788888899999999999
Q ss_pred cCCCCCCceEEEEEeCCCcccccCC
Q 002866 365 VFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 365 ~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|+++ |.|+|+++++++.++.+.+.
T Consensus 221 ~~~~-~~g~G~~~~~~~~~~~~~~~ 244 (390)
T 1elu_A 221 WFAG-PAGVGGLYIHGDCLGEINPT 244 (390)
T ss_dssp TTCC-CTTCEEEEECTTTGGGCCCC
T ss_pred cccC-CCceEEEEECHHhHhhcCCc
Confidence 6555 78999999999988888764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=245.16 Aligned_cols=217 Identities=9% Similarity=0.011 Sum_probs=177.0
Q ss_pred cccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 143 EYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 143 EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+||.+...+|||+++.++.|+.+++++.+ .+.. +..+.....+.++|+.+|+++|++++ .|+||
T Consensus 2 ~fp~~~~~~yl~~~~~~~~~~~v~~a~~~-----------~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~t 65 (392)
T 2z9v_A 2 RYPEHADPVITLTAGPVNAYPEVLRGLGR-----------TVLY---DYDPAFQLLYEKVVDKAQKAMRLSNK--PVILH 65 (392)
T ss_dssp CCCTTSCCSEECSSSCCCCCHHHHHHTTS-----------CCCC---TTSHHHHHHHHHHHHHHHHHTTCSSC--CEEES
T ss_pred CcccCCCcceeecCCCcCCCHHHHHHHhc-----------cccc---cccHHHHHHHHHHHHHHHHHhCCCCC--EEEEe
Confidence 59999999999999999999999987543 1111 11123346788999999999999765 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+|+|+.+++.++ +++|++|++.. ..|.+.. +...++..|++++.+|++. ++.++.++|+++|.. ++++
T Consensus 66 ~g~t~a~~~~~~~~-~~~gd~Vl~~~-~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~------~~~~ 135 (392)
T 2z9v_A 66 GEPVLGLEAAAASL-ISPDDVVLNLA-SGVYGKG-FGYWAKRYSPHLLEIEVPY-NEAIDPQAVADMLKA------HPEI 135 (392)
T ss_dssp SCTHHHHHHHHHHH-CCTTCCEEEEE-SSHHHHH-HHHHHHHHCSCEEEEECCT-TSCCCHHHHHHHHHH------CTTC
T ss_pred CCchHHHHHHHHHh-cCCCCEEEEec-CCcccHH-HHHHHHHcCCceEEeeCCC-CCCCCHHHHHHHHhc------CCCC
Confidence 99999999999987 67899987763 3455553 5566677899999999976 467899999998853 1257
Q ss_pred eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 303 GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++|++++.+|.||.++|++ +++.|+++|+++++|+++..|. .++++..+++|++++|+||++++ |.|+|+++++++
T Consensus 136 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~g~G~l~~~~~ 212 (392)
T 2z9v_A 136 TVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGG--MKTHPEDCKADIYVTGPNKCLGA-PPGLTMMGVSER 212 (392)
T ss_dssp CEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BSCCGGGGTCSEEEECSSSTTCC-CSCCEEEEECHH
T ss_pred cEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCC--cccccccccceEEEecCcccccC-CCceeEEEECHH
Confidence 8999999999999999997 4577899999999999998886 57888888899999999998766 789999999988
Q ss_pred CcccccC
Q 002866 382 VMGSLQN 388 (872)
Q Consensus 382 ~i~~L~P 388 (872)
.++.+++
T Consensus 213 ~~~~l~~ 219 (392)
T 2z9v_A 213 AWAKMKA 219 (392)
T ss_dssp HHHHHHT
T ss_pred HHHHhhh
Confidence 7766654
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=240.75 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=163.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc--------hHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE--------KGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps--------S~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++|||++++++.|+.+++++.+ .... .++|++ ....+.++|+.+++++|++++ .|+|
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~ 65 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLP--------YMTE-----SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVF 65 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHH--------HHHT-----SCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE--EEEE
T ss_pred CeeeccCCCCCCCHHHHHHHHH--------HHHh-----ccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEE
Confidence 5899999999999999988533 1111 234443 135788999999999999765 5999
Q ss_pred eCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+.+++.++. .++|++|++. +..|.++......++..|++++.+|+++ ++.++.++|+++|..
T Consensus 66 ~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~------ 137 (382)
T 4eb5_A 66 TSGATEANNLAIIGYAMRNARKGKHILVS-AVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRD------ 137 (382)
T ss_dssp ESSHHHHHHHHHHHHHHHHGGGCCEEEEE-TTCCHHHHHHHHHHTTTTCEEEEECBCT-TSCBCHHHHHHHCCT------
T ss_pred cCchHHHHHHHHHHHHhhccCCCCEEEEC-CCcchHHHHHHHHHHhCCcEEEEeccCC-CCccCHHHHHHHhcC------
Confidence 9999999999998874 2678998876 3456666555555556799999999985 577899999888752
Q ss_pred CCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
++++|++++.+|.||.++|++ +++.|+++|++ ++|+++..|. .++++..+++|++++|+||++| |.|+|+++
T Consensus 138 --~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK~~g--~~g~G~~~ 210 (382)
T 4eb5_A 138 --DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGALW 210 (382)
T ss_dssp --TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGGGTC--CSSCEEEE
T ss_pred --CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHHhcC--CCceEEEE
Confidence 489999999999999999997 45778999999 9999999886 5777776789999999999987 77999999
Q ss_pred EeCC
Q 002866 378 IKKS 381 (872)
Q Consensus 378 VRk~ 381 (872)
++++
T Consensus 211 ~~~~ 214 (382)
T 4eb5_A 211 IRKE 214 (382)
T ss_dssp EETT
T ss_pred Eccc
Confidence 9876
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=244.44 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=161.2
Q ss_pred HHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc--------hHHHHHHHHHHHHHhc
Q 002866 139 LRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE--------KGTVEHDIKTRIMDHL 210 (872)
Q Consensus 139 lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps--------S~~~ieeARerIA~lL 210 (872)
.|..+||.+.+.+|||+++.++.|+.+++++.+ .+ .. .+++|+ ..+.++++|+.||+++
T Consensus 8 ~~~~~~~~~~~~~~Ld~~~~~~~~~~v~~a~~~-------~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 74 (432)
T 3a9z_A 8 ARGSVESPPNRKVYMDYNATTPLEPEVIQAVTE-------AM-KE-----AWGNPSSSYVAGRKAKDIINTARASLAKMI 74 (432)
T ss_dssp ----------CCEECBTTTCCCCCHHHHHHHHH-------HH-HH-----CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcEEeeCCccCCCCHHHHHHHHH-------HH-HH-----hcCCCccCcHHHHHHHHHHHHHHHHHHHHc
Confidence 355689999889999999999999999887543 12 11 234443 1246789999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHhhCC--C-----CCCC-------------eEEEecccCchhHH-HHHHHHHHcCcEE
Q 002866 211 NIPENEYGLVFTVSRGSAFKLLAESYP--F-----HTNK-------------KLLTMFDYESQSVN-WMAQSAKEKGAKV 269 (872)
Q Consensus 211 gA~~dEY~VVFTsnATeALnLVaeslp--f-----~~Gd-------------~ILT~~DhEHnSVl-~~~~~AkrkGaeV 269 (872)
|++++ .|+||+|+|+|+.+++.++. | ++|+ .|++. ..+|.++. .|...++..|+++
T Consensus 75 g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~-~~~h~s~~~~~~~~~~~~g~~v 151 (432)
T 3a9z_A 75 GGKPQ--DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITC-TVEHDSIRLPLEHLVEDQVAEV 151 (432)
T ss_dssp TCCGG--GEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEE-TTCCHHHHHHHHHHHHTTSCEE
T ss_pred CCCcC--eEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEe-cCcchhHHHHHHHHHHhcCcEE
Confidence 99765 59999999999999888763 1 3564 45544 34677774 4555566679999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCC----------cEEEeecc
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNH----------WHVLLDAG 338 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G----------~~VLVDAA 338 (872)
+.+|++..++.++.++|+++|.. ++++|++++.+|.||.++|++. .+.|+++| +++++|++
T Consensus 152 ~~v~~~~~~~~~d~~~l~~~i~~--------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea 223 (432)
T 3a9z_A 152 TFVPVSKVNGQVEVEDILAAVRP--------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAA 223 (432)
T ss_dssp EEECCCTTTSSCCHHHHHHTCCT--------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECT
T ss_pred EEEecCcccCCcCHHHHHHhccC--------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEch
Confidence 99998764577899999877742 5899999999999999999974 56788888 99999999
Q ss_pred ccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 339 SLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 339 Q~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+..+. .++++...++|++++|+||||| |. +|+++++++.
T Consensus 224 ~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~ 262 (432)
T 3a9z_A 224 QALGK--RRVDVEDLGVDFLTIVGHKFYG--PR-IGALYVRGVG 262 (432)
T ss_dssp TTTTT--SCCCHHHHCCSEEEEEGGGTTC--CS-CEEEEETTBT
T ss_pred hhhCC--cccChhhcCCCEEEEehhHhcC--Cc-ceEEEEcccc
Confidence 98886 5778777789999999999987 76 9999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=240.86 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=173.6
Q ss_pred HHHHHHhhCCCCCCchhHHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---
Q 002866 119 AFSKFLTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--- 195 (872)
Q Consensus 119 a~~~FL~~~p~y~~t~~ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--- 195 (872)
.++..|+.. .++..+|+ +||.+++.+|||+++.++.|+.+++++.+ .+ .. .++++..
T Consensus 5 ~~~~~~~~~------~~~~~~r~-~f~~~~~~~yld~~~~~~~~~~v~~a~~~-------~l-~~-----~~~~~~~~~~ 64 (416)
T 1qz9_A 5 NDCLALDAQ------DSLAPLRQ-QFALPEGVIYLDGNSLGARPVAALARAQA-------VI-AE-----EWGNGLIRSW 64 (416)
T ss_dssp HHHHHHHHT------CTTGGGGG-GBCCCTTCEECCTTTSCCCBTTHHHHHHH-------HH-HT-----CCCCCGGGHH
T ss_pred hHHHhcccc------chhHHHHH-hCCCCCCeEeecCCCcCCCcHHHHHHHHH-------HH-HH-----HHhccCcccc
Confidence 455566544 24667886 79999889999999999999888887532 11 11 2344321
Q ss_pred -----HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CC----CCCCeEEEecccCchhHHH-HHHHHHH
Q 002866 196 -----GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PF----HTNKKLLTMFDYESQSVNW-MAQSAKE 264 (872)
Q Consensus 196 -----~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf----~~Gd~ILT~~DhEHnSVl~-~~~~Akr 264 (872)
...+.++|+.|++++|++++ .|+||+|+|+|+.+++.++ .+ ++|+++|+.....|.++.. +...++.
T Consensus 65 ~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~ 142 (416)
T 1qz9_A 65 NSAGWRDLSERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM 142 (416)
T ss_dssp HHTSGGGHHHHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcc--cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH
Confidence 25678999999999999765 4999999999998777765 45 7888754443445666543 4444444
Q ss_pred c--CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccC
Q 002866 265 K--GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 265 k--GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~a 341 (872)
. |++++.+|+ .++|+++|.. ++++|++++.+|.||.++|++. ++.|+++|+++++|++|..
T Consensus 143 ~~~g~~~~~v~~--------~~~l~~~i~~--------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~ 206 (416)
T 1qz9_A 143 LQQGYTLRLVDS--------PEELPQAIDQ--------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSA 206 (416)
T ss_dssp HCSSCEEEEESS--------GGGHHHHCST--------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred hcCCceEEEeCc--------HHHHHHHhCC--------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccc
Confidence 4 999988875 5677776642 5899999999999999999974 5678999999999999998
Q ss_pred CCCCccCCCCCCCCcEEEEcccccCCCCCCce-EEEEEeCCCcccccC
Q 002866 342 PKDMDSLGLSLFRPDFIITSFYRVFGFDPTGF-GCLLIKKSVMGSLQN 388 (872)
Q Consensus 342 G~~mipLDLs~l~~DFlv~S~HK~fG~~PtGv-G~LyVRk~~i~~L~P 388 (872)
|. .++++..+++|++++|+||++++ +.|+ |+++++++.++.+.+
T Consensus 207 g~--~~~~~~~~~~d~~~~s~~K~l~~-g~~~~g~l~~~~~~~~~l~~ 251 (416)
T 1qz9_A 207 GA--VPVDLHQAGADYAIGCTYKYLNG-GPGSQAFVWVSPQLCDLVPQ 251 (416)
T ss_dssp TT--SCCCHHHHTCSEEEECSSSTTCC-CTTCCCEEEECTTTTTTSCC
T ss_pred cC--cCCChhhcCCCEEEecCcccCCC-CCCCeEEEEECHHHHhccCC
Confidence 86 57777777899999999999754 4566 999999998777765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=230.82 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=178.4
Q ss_pred HHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCC
Q 002866 137 DQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENE 216 (872)
Q Consensus 137 D~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dE 216 (872)
..+|+ +||.++..+|||+++.+++++.+++++.+ .+. ..|+ +......+++++.+++++|++ +.
T Consensus 8 ~~~r~-~f~~~~~~~~l~~~~~~~~~~~v~~a~~~-----------~~~--~~~~-~~~~~~~~~~~~~la~~~g~~-~~ 71 (386)
T 2dr1_A 8 EAFKE-VYEMVKPKYKLFTAGPVACFPEVLEIMKV-----------QMF--SHRS-KEYRKVHMDTVERLREFLEVE-KG 71 (386)
T ss_dssp HHHHH-HHHHHSCCSEECCSSSCCCCHHHHHHTTS-----------CCC--CTTS-HHHHHHHHHHHHHHHHHHTCS-SS
T ss_pred HHHHH-HHhhcCccceeecCCCcCCcHHHHHHHhc-----------ccc--cccC-HHHHHHHHHHHHHHHHHhCCC-CC
Confidence 45675 69989889999999999999999887543 111 1222 223567889999999999997 23
Q ss_pred CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 217 YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 217 Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
..|+||+|+|+|+.+++.++ +++|++|++.. ..|.+. .+...++..|++++.++++. ++.++.++|+++|..
T Consensus 72 ~~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~---- 143 (386)
T 2dr1_A 72 EVLLVPSSGTGIMEASIRNG-VSKGGKVLVTI-IGAFGK-RYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRK---- 143 (386)
T ss_dssp EEEEESSCHHHHHHHHHHHH-SCTTCEEEEEE-SSHHHH-HHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHH----
T ss_pred cEEEEeCChHHHHHHHHHHh-hcCCCeEEEEc-CCchhH-HHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhc----
Confidence 36999999999999999987 57899987663 234432 24556777899999999976 567899999999853
Q ss_pred CCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEE
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGC 375 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~ 375 (872)
++++++|.+++.+|.||.+.|++ +++.|+++|+++++|+++..+. .++++..+++|++++|+||+|+. |.|+|+
T Consensus 144 --~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~~~~-~~g~G~ 218 (386)
T 2dr1_A 144 --NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG--ADIKFDKWGLDVVFSSSQKAFGV-PPGLAI 218 (386)
T ss_dssp --CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEEEETTSTTCC-CSSCEE
T ss_pred --CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC--ccccccccCCcEEEEeccccccC-CCceEE
Confidence 12588999999999999999997 4578899999999999998886 56788888999999999999997 778999
Q ss_pred EEEeCCCcccccC
Q 002866 376 LLIKKSVMGSLQN 388 (872)
Q Consensus 376 LyVRk~~i~~L~P 388 (872)
++++++.++.+.+
T Consensus 219 ~~~~~~~~~~~~~ 231 (386)
T 2dr1_A 219 GAFSERFLEIAEK 231 (386)
T ss_dssp EEECHHHHHHHTT
T ss_pred EEECHHHHHHHhc
Confidence 9999877666653
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=231.39 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=172.2
Q ss_pred CCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCC
Q 002866 147 LSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEY 217 (872)
Q Consensus 147 L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY 217 (872)
-+..||||+++.++.|+.+++++.+. +.....|++|++ ...++++|+.+++++|++++
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-- 86 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQF-----------MTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-- 86 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTS-----------SSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG--
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHH-----------HhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 35699999999999999999886431 110024555543 35778999999999999865
Q ss_pred cEEEeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhh
Q 002866 218 GLVFTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKK 294 (872)
Q Consensus 218 ~VVFTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~ 294 (872)
.|+||+|+|+|+.+++.++. -.+|+.|++.. ..|.++......++..|+++..+|++. ++.++.++|+++|..
T Consensus 87 ~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-- 162 (423)
T 3lvm_A 87 EIVFTSGATESDNLAIKGAANFYQKKGKHIITSK-TEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRD-- 162 (423)
T ss_dssp GEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEET-TSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCT--
T ss_pred eEEEeCChHHHHHHHHHHHHHhhccCCCEEEECC-ccchHHHHHHHHHHHcCCEEEEeccCC-CCccCHHHHHHhcCC--
Confidence 59999999999999888764 13689988763 345666544444577899999999986 678899999988853
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCce
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGF 373 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGv 373 (872)
++++|++++.+|.||.++|++ +++.|+++|+++++|+++..+. .++++...++|++++|+||+|| |.|+
T Consensus 163 ------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~g~ 232 (423)
T 3lvm_A 163 ------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKGI 232 (423)
T ss_dssp ------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTSCCSEEEEESTTTTS--CSSC
T ss_pred ------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC--CCcChhhcCCCEEEechHHhcC--CCCe
Confidence 589999999999999999997 4567899999999999999886 5788888999999999999887 6789
Q ss_pred EEEEEeCCCcccccC
Q 002866 374 GCLLIKKSVMGSLQN 388 (872)
Q Consensus 374 G~LyVRk~~i~~L~P 388 (872)
|+++++++....+.+
T Consensus 233 G~~~~~~~~~~~~~~ 247 (423)
T 3lvm_A 233 GALYVRRKPRVRIEA 247 (423)
T ss_dssp EEEEECBTTBCCCCC
T ss_pred EEEEEeccccCCCCc
Confidence 999999887665543
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=237.95 Aligned_cols=204 Identities=15% Similarity=0.075 Sum_probs=163.5
Q ss_pred CCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 148 SPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 148 ~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~V 219 (872)
+.+||||+++.+++|+.+++++.+ .+.. .++||++ ...++++|+.+|+++|++++ .|
T Consensus 19 ~~~iyld~~~~~~~~~~v~~a~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v 83 (400)
T 3vax_A 19 SHMTYLDAAATTRVDQRVADIVLH-------WMTA------EFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD--EL 83 (400)
T ss_dssp ---CCCCCCCCSSSCHHHHHHHHH-------HHHH------HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG--GE
T ss_pred CCcEEecCCCCCCCCHHHHHHHHH-------HHHh------ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC--cE
Confidence 458999999999999999987543 1111 1344432 25678999999999999865 59
Q ss_pred EEeCCHHHHHHHHHhhCC-C--CCCC-eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhc
Q 002866 220 VFTVSRGSAFKLLAESYP-F--HTNK-KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKR 295 (872)
Q Consensus 220 VFTsnATeALnLVaeslp-f--~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~r 295 (872)
+||+|+|+|+++++.++. + ++|| +|++. +.+|.++......+++.|+++..+|++. ++.++.++|+++|..
T Consensus 84 ~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~--- 158 (400)
T 3vax_A 84 IFTSGATESNNIALLGLAPYGERTGRRHIITS-AIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGRISVEGVMERLRP--- 158 (400)
T ss_dssp EEESCHHHHHHHHHHTTHHHHHHHTCCEEEEE-TTSCHHHHHHHHHHHTTTCEEEEECCCT-TCCCCHHHHHTTCCT---
T ss_pred EEeCCHHHHHHHHHHHHHHhhccCCCCEEEEC-ccccHhHHHHHHHHHhcCCeEEEEccCC-CCCcCHHHHHHhcCC---
Confidence 999999999999999873 2 5789 88876 3456676554455566899999999986 678899999877742
Q ss_pred cCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceE
Q 002866 296 RKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFG 374 (872)
Q Consensus 296 r~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG 374 (872)
++++|++++.+|.||.++|++ +++.|+++|+++++|++++.|. .++++..+ +|++++|+||++| |.|+|
T Consensus 159 -----~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~-~d~~~~s~~K~~g--~~g~g 228 (400)
T 3vax_A 159 -----DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK--VPGDLTTP-IDMISISGHKIGA--PKGVG 228 (400)
T ss_dssp -----TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT--SGGGGGSC-CSEEEEETGGGTS--CSSCE
T ss_pred -----CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC--CCcChhhc-CcEEEEeHHHhCC--CCceE
Confidence 589999999999999999997 4567899999999999999886 57888877 9999999999877 78999
Q ss_pred EEE-EeCC
Q 002866 375 CLL-IKKS 381 (872)
Q Consensus 375 ~Ly-VRk~ 381 (872)
++| ++++
T Consensus 229 ~~~~~~~~ 236 (400)
T 3vax_A 229 ALVTRRRE 236 (400)
T ss_dssp EEEECBCS
T ss_pred EEEEecch
Confidence 999 8874
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=222.03 Aligned_cols=203 Identities=16% Similarity=0.137 Sum_probs=164.7
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+|||+++.++.|+.+++++.+ ... ..|++|+. ...+.++|+.+++++|++++ .|+||
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~ 67 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIV--------FYR-----EKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS--EIFFT 67 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHH--------HHH-----TCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG--GEEEE
T ss_pred EEEecCccCCCCHHHHHHHHH--------HHH-----hcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC--eEEEE
Confidence 899999999999999987533 111 13445431 35678999999999999865 59999
Q ss_pred CCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 223 VSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 223 snATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
+|+|+|+.+++.++. +++|++|++. +..|.++......++..|+++..+|++. ++.++.++|+++|..
T Consensus 68 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~------- 138 (384)
T 1eg5_A 68 SCATESINWILKTVAETFEKRKRTIITT-PIEHKAVLETMKYLSMKGFKVKYVPVDS-RGVVKLEELEKLVDE------- 138 (384)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTCCEEEEC-TTSCHHHHHHHHHHHHTTCEEEECCBCT-TSCBCHHHHHHHCCT-------
T ss_pred CCHHHHHHHHHHhhhhhccCCCCEEEEC-CCCchHHHHHHHHHHhcCCEEEEEccCC-CCccCHHHHHHHhCC-------
Confidence 999999999999876 3789998876 3355666554445567899999999875 577899999888752
Q ss_pred CCceEEEEeCccCcccchhcHH-HHHHHHHCC--cEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNH--WHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G--~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++++|.+++.+|.||.++|++ +++.|+++| +++++|+++..+. .++++..+++|++++|+||+|| |.|+|++
T Consensus 139 -~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~G~G~~ 213 (384)
T 1eg5_A 139 -DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PKGVGIT 213 (384)
T ss_dssp -TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CTTCEEE
T ss_pred -CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC--cccCchhcCCCEEEecHHHhcC--CCceEEE
Confidence 589999999999999999997 456789999 9999999998775 4778877889999999999988 6789999
Q ss_pred EEeCCC
Q 002866 377 LIKKSV 382 (872)
Q Consensus 377 yVRk~~ 382 (872)
+++++.
T Consensus 214 ~~~~~~ 219 (384)
T 1eg5_A 214 YIRKGV 219 (384)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 998764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=222.03 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=164.6
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
++.+.+..++++.+++++.+. +. .+..+...+.++++|+.+++++|++++...|+||+|+|+|+.
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~-----------~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~- 68 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLEN-----------NV---GFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME- 68 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCC-----------SC---CTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-
T ss_pred eeccCCCCCCCHHHHHHhhcc-----------cc---ccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-
Confidence 566677788888888875331 11 112233357889999999999999873236999999999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++ +++||+|++.. ..|.+. .+...++..|++++.+|++. ++.++.++|+++|... ++++|++++.+
T Consensus 69 ~~~~~-~~~gd~vi~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~-------~~~~v~~~~~~ 137 (384)
T 3zrp_A 69 SVTSL-LKPNDKILVVS-NGVFGD-RWEQIFKRYPVNVKVLRPSP-GDYVKPGEVEEEVRKS-------EYKLVALTHVE 137 (384)
T ss_dssp HGGGG-CCTTCEEEEEC-SSHHHH-HHHHHHTTSSCEEEEECCST-TCCCCHHHHHHHHHHS-------CEEEEEEESEE
T ss_pred HHHhh-cCCCCEEEEec-CCcchH-HHHHHHHHcCCcEEEecCCC-CCCCCHHHHHHHHHhC-------CCcEEEEeCCC
Confidence 88777 68899988763 234332 35556677899999999987 5778999999999742 48999999999
Q ss_pred CcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 312 RVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 312 NvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
|.||.++|++. ++.|+++|+++++|++|..+. .++++...++|++++|+||+|++ |.|+|+++++++.++.+
T Consensus 138 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~g~~~~~~~~~~~~ 210 (384)
T 3zrp_A 138 TSTGVREPVKDVINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGS-AAGLGLLLLSPKALSIL 210 (384)
T ss_dssp TTTTEECCHHHHHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCC-CSSEEEEEECHHHHHHH
T ss_pred CCCceECcHHHHHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccC-CCceEEEEECHHHHHHh
Confidence 99999999984 567899999999999999886 58888888999999999999876 78999999999887766
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=224.60 Aligned_cols=217 Identities=13% Similarity=0.047 Sum_probs=174.7
Q ss_pred cccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 143 EYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 143 EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
.||.|.. .+|+|+.+..++|+.+++++.+ .+.. .| ++.....+.++|+.+++++|++++ +.|+|
T Consensus 11 ~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~-----------~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~-~~i~~ 75 (393)
T 2huf_A 11 LREPLVTPNKLLMGPGPSNAPQRVLDAMSR-----------PILG--HL-HPETLKIMDDIKEGVRYLFQTNNI-ATFCL 75 (393)
T ss_dssp GGSCCCCCCCEECSSSCCCCCHHHHHHTTS-----------CCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCS-EEEEE
T ss_pred hhcccCCCCeEEecCCCCCCCHHHHHHHHh-----------hhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Confidence 5887765 8999999999999999887543 1111 12 343456789999999999999764 36999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+|+.+++.++ +++|++|++.. ..|.+. .+...++..|++++.+|+++ ++.++.++|+++|... +
T Consensus 76 ~~g~t~a~~~~~~~~-~~~gd~vl~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~-------~ 144 (393)
T 2huf_A 76 SASGHGGMEATLCNL-LEDGDVILIGH-TGHWGD-RSADMATRYGADVRVVKSKV-GQSLSLDEIRDALLIH-------K 144 (393)
T ss_dssp SSCHHHHHHHHHHHH-CCTTCEEEEEE-SSHHHH-HHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-------C
T ss_pred cCcHHHHHHHHHHHH-hCCCCEEEEEC-CCcchH-HHHHHHHHcCCeeEEEeCCC-CCCCCHHHHHHHHhcc-------C
Confidence 999999999999987 67899987653 234443 34555677899999999976 4678999999998641 3
Q ss_pred ceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+++|++++.+|.||.++|++ +++.|+++|+++++|++|..+. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~sK~l~g-~~G~G~~~~~~ 221 (393)
T 2huf_A 145 PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG--APMFMDRWEIDAMYTGSQKVLGA-PPGITPVSFSH 221 (393)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSSSTTCC-CSSCEEEEECH
T ss_pred CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCcchhhcCccEEEECCCccccc-CCCeEEEEECH
Confidence 78999999999999999997 5678899999999999999886 57888888999999999998666 78999999998
Q ss_pred CCcccccC
Q 002866 381 SVMGSLQN 388 (872)
Q Consensus 381 ~~i~~L~P 388 (872)
+.++.+.+
T Consensus 222 ~~~~~~~~ 229 (393)
T 2huf_A 222 RAVERYKR 229 (393)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77766653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=252.09 Aligned_cols=243 Identities=8% Similarity=-0.044 Sum_probs=166.4
Q ss_pred CCCCCCc-hhHHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhh-ccCcCcCCCc------hHHH
Q 002866 127 YPKYQSS-DKIDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANL-SNHALYGGAE------KGTV 198 (872)
Q Consensus 127 ~p~y~~t-~~ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL-~~~~~ygNps------S~~~ 198 (872)
.|+.+.+ +++.++|+ +||.++..+||||+|+||.|+.|++++....++. .+.... .......||. ..+.
T Consensus 58 lp~~g~~~~~i~~~~~-~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (456)
T 2z67_A 58 IPENGIDDEKIKLFLK-FLSMMDTDKDPKSVRIGEREARTYSKIHEELSSG--FCHGIGRSGNLVDPQPKASGASIMYAL 134 (456)
T ss_dssp CCSSCCCHHHHHHHHH-HHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTT--CTTCBSBTTBTTSCCTTBHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-HHHhccccccccccccccccccccccccCccccc--cCCCccHHHHHHhhCcccccCcHHHHH
Confidence 3443333 46888886 6999988999999999999988877643210000 000000 0000112321 2467
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH-HHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc-
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL-LAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK- 275 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnL-Vaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd- 275 (872)
++++|+.+|+++|++++ ++||+|+|++.++ ++.++ .+.+++.||++.. +|.++. +.++..|++++.+++.
T Consensus 135 ~~~~~~~la~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~---~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 135 TNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPI---KAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHH---HHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHH---HHHHHcCCCceEEEEec
Confidence 78999999999999753 9999999964443 33222 1224566665533 677643 4456689999998862
Q ss_pred -CCCCccCHHHHHHHH-hhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeecc---ccCCCCCccCC
Q 002866 276 -WPTLKLCSTDLRKQI-SSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAG---SLGPKDMDSLG 349 (872)
Q Consensus 276 -~p~g~Id~edLe~~I-~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAA---Q~aG~~mipLD 349 (872)
..++.++.++|+++| .... ..++.+|+++..+|.||++.|++. .+.|+++|++++||+| |++|. .+++
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~----~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~--~~~~ 281 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIE----LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY--LEKL 281 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHH----TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH--HHHH
T ss_pred cCCCCCcCHHHHHHHHHHHhh----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh--hHHH
Confidence 235789999999999 4210 125778888888999999999985 5678999999999954 55554 4555
Q ss_pred CCCC--CCcEEEEcccccCCCCCCceEEEEEeC-CCcccc
Q 002866 350 LSLF--RPDFIITSFYRVFGFDPTGFGCLLIKK-SVMGSL 386 (872)
Q Consensus 350 Ls~l--~~DFlv~S~HK~fG~~PtGvG~LyVRk-~~i~~L 386 (872)
+..+ ++||+++|+|||+++ |.|+|+||+|+ +.+..+
T Consensus 282 ~~~~~~~~D~~~~s~hK~~~~-p~g~G~l~~~~~~~~~~l 320 (456)
T 2z67_A 282 KKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEI 320 (456)
T ss_dssp HHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHH
T ss_pred HHhhCCCCCEEEEcCCCCcCC-CCCeEEEEEcCHHHHhhc
Confidence 5444 899999999999777 89999999964 444444
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=223.63 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=178.5
Q ss_pred hHHHHHhhcccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCC
Q 002866 135 KIDQLRANEYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIP 213 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~ 213 (872)
..+++|. +||.+.. .+|||+++.+++++.+++++.+ .+. ..|+ +......+++++.+++++|++
T Consensus 19 ~~~~~r~-~~~~~~~~~~~l~~~~~~~~~~~v~~a~~~-----------~~~--~~~~-~~~~~~~~~~~~~la~~~g~~ 83 (393)
T 1vjo_A 19 INDNQRL-QLEPLEVPSRLLLGPGPSNAHPSVLQAMNV-----------SPV--GHLD-PAFLALMDEIQSLLRYVWQTE 83 (393)
T ss_dssp CCCTTCC-CCCSCCCCCCEECSSSCCCCCHHHHHHHSS-----------CCC--CTTS-HHHHHHHHHHHHHHHHHHTCC
T ss_pred ecchhhh-cCCccCCccceeccCCCCCCCHHHHHHHhc-----------ccc--cccC-HHHHHHHHHHHHHHHHHhCCC
Confidence 4566775 7998765 7899999999999999887543 111 1222 223467889999999999997
Q ss_pred CCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhh
Q 002866 214 ENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSK 293 (872)
Q Consensus 214 ~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~ 293 (872)
++ +.|+||+|+|+|+++++.++ +++|++|++... .|.+. .+...++..|+++..+|++. ++.++.++|+++|...
T Consensus 84 ~~-~~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~-~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~ 158 (393)
T 1vjo_A 84 NP-LTIAVSGTGTAAMEATIANA-VEPGDVVLIGVA-GYFGN-RLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETH 158 (393)
T ss_dssp CS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEES-SHHHH-HHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH
T ss_pred CC-cEEEEeCchHHHHHHHHHhc-cCCCCEEEEEcC-ChhHH-HHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhC
Confidence 54 35999999999999999987 578999876532 33331 24556677899999999976 5678999999998641
Q ss_pred hccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 294 KRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 294 ~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
++++|++++.+|.||.++|++ +++.|+++|+++++|+++..|. .++++...++|++++|+||+|++ |.|
T Consensus 159 -------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~di~~~s~sK~l~~-~~~ 228 (393)
T 1vjo_A 159 -------RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQKGLGC-SPG 228 (393)
T ss_dssp -------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCS-CSS
T ss_pred -------CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccC--cCCcccccCccEEEEcCcccccC-CCc
Confidence 378999999999999999997 5678899999999999998886 58888888999999999999887 779
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|+++++++.++.+.
T Consensus 229 ~G~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 229 ASPFTMSSRAIEKLQ 243 (393)
T ss_dssp CEEEEECHHHHHHHH
T ss_pred eEEEEECHHHHHHHh
Confidence 999999987765553
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-23 Score=219.28 Aligned_cols=216 Identities=10% Similarity=0.041 Sum_probs=172.2
Q ss_pred ccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 144 YLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 144 FP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
|+.+.. ..||...+-.++++.+++++.+ .+. .+..+.....++++|+.+++++|++++ ..|+||
T Consensus 6 ~~~~~~~~~~~~~pgp~~~~~~v~~a~~~-----------~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~ 70 (411)
T 3nnk_A 6 FSQLNPPSRLLMGPGPINADPRVLRAMSS-----------QLI---GQYDPAMTHYMNEVMALYRGVFRTENR-WTMLVD 70 (411)
T ss_dssp SCSCCCCCCEEESSSCCCCCHHHHHHHTS-----------CCC---CTTCHHHHHHHHHHHHHHHHHHTCCCS-EEEEEE
T ss_pred ccccCCccceeecCCCCCCCHHHHHHhhc-----------ccc---ccccHHHHHHHHHHHHHHHHHhCCCCC-cEEEEC
Confidence 555533 6788888888888888887532 110 122333346788999999999999854 358999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
.|+|+|+.+++.++ +++|++|++... .|.+.. +...++..|++++.+|++. ++.++.++|+++|... ++
T Consensus 71 ~sgt~al~~~~~~~-~~~gd~Vl~~~~-~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~-------~~ 139 (411)
T 3nnk_A 71 GTSRAGIEAILVSA-IRPGDKVLVPVF-GRFGHL-LCEIARRCRAEVHTIEVPW-GEVFTPDQVEDAVKRI-------RP 139 (411)
T ss_dssp SCHHHHHHHHHHHH-CCTTCEEEEEEC-SHHHHH-HHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-------CC
T ss_pred CCcHHHHHHHHHHh-cCCCCEEEEecC-CchHHH-HHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHhhC-------CC
Confidence 99999999999988 789999887632 343322 4566778899999999975 5778999999999742 48
Q ss_pred eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 303 GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++|++++.+|.||.++|++ +.+.|+++|+++++|++|..+. .++++...++|++++|+||++++ |.|+|+++++++
T Consensus 140 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~ 216 (411)
T 3nnk_A 140 RLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLGG-PSGTSPITLSAR 216 (411)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTCC-CSSEEEEEECHH
T ss_pred eEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccCC-CCceEEEEECHH
Confidence 8999999999999999997 5678899999999999998886 68899889999999999998665 789999999998
Q ss_pred CcccccC
Q 002866 382 VMGSLQN 388 (872)
Q Consensus 382 ~i~~L~P 388 (872)
.++.+.+
T Consensus 217 ~~~~~~~ 223 (411)
T 3nnk_A 217 MEEAIRR 223 (411)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8766654
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=226.57 Aligned_cols=209 Identities=12% Similarity=0.154 Sum_probs=148.4
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhcc--CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCc-EEEeCCH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSN--HALYGGAEKGTVEHDIKTRIMDHLNIPENEYG-LVFTVSR 225 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~--~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~-VVFTsnA 225 (872)
..+|||++|.+++|+.+++++.+. + ......... ...+..+...+..+++|+++++++|++++ ++ |+||+|+
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~i~~t~g~ 77 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAE--F--VDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG-YKVLFIQGGA 77 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHT--S--SSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS-EEEEEESSHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHH--H--hhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCC-cEEEEECCCc
Confidence 468999999999999999885431 1 000000000 00001122345788999999999999653 24 5788999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC--C-CCccCHHHHHHHHhhhhccCCCCCc
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW--P-TLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~--p-~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
|+|+++++.++ +++||+|++... .|.+ ..+...++..| +++.++++. . ...++.++++ | +++|
T Consensus 78 t~a~~~~~~~l-~~~gd~vl~~~~-~~~~-~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i--------~~~t 143 (362)
T 2c0r_A 78 STQFAMIPMNF-LKEGQTANYVMT-GSWA-SKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--L--------QDNA 143 (362)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEEC-SHHH-HHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--C--------CTTE
T ss_pred hHHHHHHHHhc-CCCCCeEEEEec-CcHh-HHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--c--------CCCc
Confidence 99999999987 478999865421 2222 12345566679 999999862 1 1224554432 2 2369
Q ss_pred eEEEEeCccCcccch-hcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 303 GLFVFPVQSRVTGAK-YSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i-~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++|++++.+|.||++ .|++.| +|+++++|++|..+. .++++.+. |++++|+||||| |.|+|+|+++++
T Consensus 144 ~~v~~~~~~n~tG~~~~~l~~i-----~~~~vivD~a~~~~~--~~~~~~~~--d~~~~s~~K~~g--~~G~G~l~~~~~ 212 (362)
T 2c0r_A 144 AYLHLTSNETIEGAQFKAFPDT-----GSVPLIGDMSSDILS--RPFDLNQF--GLVYAGAQKNLG--PSGVTVVIVRED 212 (362)
T ss_dssp EEEEEESEETTTTEECSSCCCC-----TTSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTC--CSSCEEEEEEGG
T ss_pred CEEEEeCCcCccceeccccccc-----CCCEEEEEChhhccC--CccchhHC--cEEEEecccccc--CcCcEEEEEcHH
Confidence 999999999999996 677655 899999999999987 57887765 999999999998 789999999988
Q ss_pred Cccccc
Q 002866 382 VMGSLQ 387 (872)
Q Consensus 382 ~i~~L~ 387 (872)
.++.+.
T Consensus 213 ~~~~l~ 218 (362)
T 2c0r_A 213 LVAESP 218 (362)
T ss_dssp GSSSCC
T ss_pred HHhhcc
Confidence 766554
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=219.15 Aligned_cols=209 Identities=14% Similarity=0.190 Sum_probs=157.6
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHH
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFK 230 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALn 230 (872)
.|+++.+-.++|+.+++++.+ .+...... ..+..+...+.++++|+.+++++|++. .+.|+||+|+|+|++
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~v~~~~g~t~al~ 75 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMIT-------ALDEKIGV-ISHRSKKFEEVYKTASDNLKTLLELPS-NYEVLFLASATEIWE 75 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHH-------HHHTTTTT-SCTTSHHHHHHHHHHHHHHHHHTTCCT-TEEEEEESCHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHH-------HhcCCccC-cCCCCHHHHHHHHHHHHHHHHHhCCCC-CcEEEEeCCchHHHH
Confidence 577888888888888876432 12211100 011223334778999999999999963 236999999999999
Q ss_pred HHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCc
Q 002866 231 LLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQ 310 (872)
Q Consensus 231 LVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~v 310 (872)
+++.++. ++ +.+++...+ .+ ..+...++..|++++.++.+. +..++.++|+ + +++|++|.+++.
T Consensus 76 ~~~~~l~-~~-~~i~~~~~~--~~-~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~--~--------~~~~~~v~~~~~ 139 (362)
T 3ffr_A 76 RIIQNCV-EK-KSFHCVNGS--FS-KRFYEFAGELGREAYKEEAAF-GKGFYPADIT--V--------PADAEIICLTHN 139 (362)
T ss_dssp HHHHHHC-SS-EEEEEECSH--HH-HHHHHHHHHTTCEEEEEECCT-TCCCCGGGCC--C--------CTTCCEEEEESE
T ss_pred HHHHhcc-CC-cEEEEcCcH--HH-HHHHHHHHHhCCCeEEEecCC-CCCCCHHHHh--c--------cCCccEEEEEcC
Confidence 9999875 34 334444332 22 244556778899999999875 4678888886 2 236899999999
Q ss_pred cCcccchhcHHHH-HHHHHC-CcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 311 SRVTGAKYSYQWM-ALAQQN-HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 311 SNvTG~i~PLe~I-~~Are~-G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+|.||.++|++.| +.|+++ |+++++|+++..+. .++++.. +|++++|+||+||+ |.|+|+++++++.++.+.+
T Consensus 140 ~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~--~~~~~~~--~d~~~~s~~K~~~~-~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 140 ETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY--PKFDWTK--IDSVFFSVQKCFGL-PAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp ETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS--SCCCTTS--CSEEEEETTSTTCC-CSCCEEEEEEHHHHHHHHH
T ss_pred CCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC--cccChhH--CcEEEEecccccCC-CCceEEEEECHHHHHHhhh
Confidence 9999999999854 578999 99999999999886 5777765 89999999999998 7899999999988777765
Q ss_pred C
Q 002866 389 Q 389 (872)
Q Consensus 389 ~ 389 (872)
.
T Consensus 215 ~ 215 (362)
T 3ffr_A 215 L 215 (362)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=220.34 Aligned_cols=210 Identities=15% Similarity=0.069 Sum_probs=163.9
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCC--CCCcEEEeCCHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPE--NEYGLVFTVSRGS 227 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~--dEY~VVFTsnATe 227 (872)
..|+.+.+..++++.+++++.+ .+ ..+++|.+...+.++|+.++++++... +...|+||+|+|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~-----------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~ 70 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDV-----------PS---LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTL 70 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSC-----------CC---CCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTH
T ss_pred cceeecCCCcCchHHHHHHHhc-----------cc---cccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHH
Confidence 4567777777788888887532 11 123566655667789999999998741 1126999999999
Q ss_pred HHHHHHhhCC--CCCCCeEEEe-cccCchhHHHHHHHHHHcCcEEEEEec-cCCCCccCHHHHHHHHhhhhccCCCCCce
Q 002866 228 AFKLLAESYP--FHTNKKLLTM-FDYESQSVNWMAQSAKEKGAKVYSAWF-KWPTLKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 228 ALnLVaeslp--f~~Gd~ILT~-~DhEHnSVl~~~~~AkrkGaeV~~Vpv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+.+++.++. |++|++|++. ..+.|.++ ...++..|++++.+++ +. ++.++.++|+++|... +++
T Consensus 71 al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~-------~~~ 139 (385)
T 2bkw_A 71 GWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQN-------SYG 139 (385)
T ss_dssp HHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHS-------CCS
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEecCCC-CCCCCHHHHHHHHhcC-------CCC
Confidence 9999998864 4789998665 34445543 2445678999999998 65 5778999999998641 478
Q ss_pred EEEEeCccCcccchhcHHH-HHHHHHC--CcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 304 LFVFPVQSRVTGAKYSYQW-MALAQQN--HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PLe~-I~~Are~--G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+|++++.+|.||.++|++. ++.|+++ |+++++|++|..+. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~G~G~~~~~~ 216 (385)
T 2bkw_A 140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIGA-PAGLSISLCSS 216 (385)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CSCEEEEEECH
T ss_pred EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC--ccccccccCceEEEecCcccccc-CCcceEEEEcH
Confidence 9999999999999999984 5678999 99999999999886 57888888999999999998776 88999999988
Q ss_pred CCcc-ccc
Q 002866 381 SVMG-SLQ 387 (872)
Q Consensus 381 ~~i~-~L~ 387 (872)
+.++ .++
T Consensus 217 ~~~~~~l~ 224 (385)
T 2bkw_A 217 RFMDYALN 224 (385)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 7665 553
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=216.74 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=161.5
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
||.+++.+++|+.+++++.+ .+. .+..+.....+.++|+.+|+++|++++ .|+||+|+|+|+.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~-----------~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~--~i~~~~g~t~a~~~ 66 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALAR-----------PQL---HHRTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEA 66 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHS-----------CCC---CTTSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhcc-----------CCC---CccCHHHHHHHHHHHHHHHHHhCCCCc--eEEEcCchHHHHHH
Confidence 89999999999999887543 111 111233345778999999999999764 59999999999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++ +++|++|++.. .+|.+.. +...++..|++++.++++. ++.++.++|++ +++++|++++.+
T Consensus 67 ~~~~~-~~~gd~vl~~~-~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~-----------~~~~~v~~~~~~ 131 (352)
T 1iug_A 67 LVKNL-FAPGERVLVPV-YGKFSER-FYEIALEAGLVVERLDYPY-GDTPRPEDVAK-----------EGYAGLLLVHSE 131 (352)
T ss_dssp HHHHH-CCTTCEEEEEE-CSHHHHH-HHHHHHHTTCEEEEEECCT-TCCCCTTTSCC-----------SSCSEEEEESEE
T ss_pred HHHhc-cCCCCeEEEEe-CCchhHH-HHHHHHHcCCceEEEeCCC-CCCCCHHHHhc-----------cCCcEEEEEEec
Confidence 99987 67899988763 3456665 5566777899999999975 46677776643 257899999999
Q ss_pred CcccchhcHHH-HHHHHHC--CcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 312 RVTGAKYSYQW-MALAQQN--HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 312 NvTG~i~PLe~-I~~Are~--G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|.||.++|++. ++.|+++ |+++++|+++..|. .++++..+++|++++|+|||+++ |.|+|+++++++.++.++
T Consensus 132 nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~~~~~~~~ 207 (352)
T 1iug_A 132 TSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGFVALSPRALERLK 207 (352)
T ss_dssp TTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEEEEECHHHHHTCC
T ss_pred CCcceecCHHHHHHHHHhhCCCCEEEEECCccccC--cceeccccCeeEEEecCcccccC-CCceeEEEECHHHHHHhh
Confidence 99999999984 5678999 99999999998876 57888778899999999997666 889999999887665553
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=221.52 Aligned_cols=216 Identities=11% Similarity=0.040 Sum_probs=171.9
Q ss_pred cccCCCC-ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 143 EYLHLSP-KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 143 EFP~L~~-~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
.||.|.. .+|+++.+..++++.+++++.+ .+. ..| ++.....+.++|+.||+++|++++ +.|+|
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~-----------~~~--~~~-~~~~~~~~~~l~~~la~~~~~~~~-~~v~~ 74 (396)
T 2ch1_A 10 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTN-----------TVL--SNF-HAELFRTMDEVKDGLRYIFQTENR-ATMCV 74 (396)
T ss_dssp GSSCCCCCCCBCCSSSSCCCCHHHHHHTTS-----------CCC--CTT-CHHHHHHHHHHHHHHHHHHTCCCS-CEEEE
T ss_pred cCCCCCCCcceeecCCCCCCCHHHHHHhcc-----------ccc--cCC-ChhHHHHHHHHHHHHHHHhCCCCC-cEEEE
Confidence 4877765 7889988888899988887533 111 112 333335688999999999999765 25999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+|+.+++.++ +++|++|++.. ..|.+. .+...++..|++++.++++. ++.++.++|+++|... +
T Consensus 75 ~~g~t~al~~~~~~~-~~~gd~vl~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-------~ 143 (396)
T 2ch1_A 75 SGSAHAGMEAMLSNL-LEEGDRVLIAV-NGIWAE-RAVEMSERYGADVRTIEGPP-DRPFSLETLARAIELH-------Q 143 (396)
T ss_dssp SSCHHHHHHHHHHHH-CCTTCEEEEEE-SSHHHH-HHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHHH-------C
T ss_pred CCcHHHHHHHHHHHh-cCCCCeEEEEc-CCcccH-HHHHHHHHcCCceEEecCCC-CCCCCHHHHHHHHHhC-------C
Confidence 999999999999987 57899987663 234444 23456777899999999976 5678999999998642 3
Q ss_pred ceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+++|++++.+|.||.++|++ +++.|+++|+++++|+++..|. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 144 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~g~~~~~~ 220 (396)
T 2ch1_A 144 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-PPGITPISISP 220 (396)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-CSSCEEEEECH
T ss_pred CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccC--CccchhhcCcCEEEEcCCccccC-CCCeEEEEECH
Confidence 78999999999999999997 5678899999999999998886 58888888999999999998777 78999999998
Q ss_pred CCccccc
Q 002866 381 SVMGSLQ 387 (872)
Q Consensus 381 ~~i~~L~ 387 (872)
+.++.+.
T Consensus 221 ~~~~~~~ 227 (396)
T 2ch1_A 221 KALDVIR 227 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7766554
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-23 Score=212.21 Aligned_cols=206 Identities=13% Similarity=0.026 Sum_probs=162.0
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
+|.+++.+++|+.+++++.+ .+.. +..+.....+.++|+.+++++|++.+.+.|+||+|+|+|+++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~-----------~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~ 67 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLR-----------PMRG---HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEA 67 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGS-----------CCCC---TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhc-----------cccc---ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHH
Confidence 56678888899999887543 1111 122333467889999999999996323369999999999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++. + ++|++. +.+|.+. .+...++..|++++.+|++. ++.++.++|+++|... ++++|++++.+
T Consensus 68 ~~~~~~-~--d~vl~~-~~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-------~~~~v~~~~~~ 134 (353)
T 2yrr_A 68 GLANLD-R--GPVLVL-VNGAFSQ-RVAEMAALHGLDPEVLDFPP-GEPVDPEAVARALKRR-------RYRMVALVHGE 134 (353)
T ss_dssp HHHTCS-C--CCEEEE-ECSHHHH-HHHHHHHHTTCCEEEEECCT-TSCCCHHHHHHHHHHS-------CCSEEEEESEE
T ss_pred HHHHhc-C--CcEEEE-cCCCchH-HHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHHhC-------CCCEEEEEccC
Confidence 998874 3 677665 3345555 56666788899999999976 5678999999988641 47899999999
Q ss_pred CcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 312 RVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 312 NvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|.||.++|++. ++.|+++|+++++|+++..+. .++++..+++|++++|+|||+++ |.|+|+++++++.++.++
T Consensus 135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~~~~~~l~ 208 (353)
T 2yrr_A 135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM--LPFSMRAMGVDYAFTGSQKCLSA-PPGLAPIAASLEARKAFT 208 (353)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEECCTTSTTCC-CSSCEEEEECHHHHHHCC
T ss_pred CCcceecCHHHHHHHHHHcCCeEEEEcCccccc--ccccccccCceEEEecCcccccC-CCceEEEEECHHHHHHhc
Confidence 99999999984 567899999999999998776 46777777899999999998766 789999999987765553
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-22 Score=205.61 Aligned_cols=208 Identities=13% Similarity=0.030 Sum_probs=156.7
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchH-HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKG-TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFK 230 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~-~~ieeARerIA~lLgA~~dEY~VVFTsnATeALn 230 (872)
|+.+.+..+.|+.+++++.+. + .+..+... ..+.++|++||+++|.+.+...|+||+|+|+|+.
T Consensus 6 ~~~~~gp~~~~~~v~~a~~~~-----------~----~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 6 LLLTPGPLTTSRTVKEAMLFD-----------S----CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp EECSSSSCCCCHHHHHTTCCC-----------C----CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHH
T ss_pred ccccCCCcCCCHHHHHHHhhh-----------h----cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHH
Confidence 444445555778888875331 0 01111112 4578899999999994221125999999999999
Q ss_pred HHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCc
Q 002866 231 LLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQ 310 (872)
Q Consensus 231 LVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~v 310 (872)
+++.++ .++|+++++.....|.+. +...++..|+++..+|++. .+.++.++|+++|... +++++|.+++.
T Consensus 71 ~~~~~~-~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~------~~~~~v~~~~~ 140 (366)
T 1m32_A 71 AVLGSA-LGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNAD------PTISHIAMVHS 140 (366)
T ss_dssp HHHHHS-CCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHC------TTCCEEEEESE
T ss_pred HHHHHh-cCCCCeEEEEeCCCccHH--HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcC------CCeEEEEEecc
Confidence 999998 467888765533334432 2345566799999999875 5778999999999742 24789999999
Q ss_pred cCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 311 SRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 311 SNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+|.||.++|++ +++.|+++|+++++|+++..+. .++++...++|++++|+||++++ |.|+|+++++++.++.+.
T Consensus 141 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~~K~~~~-~~g~G~~~~~~~~~~~~~ 215 (366)
T 1m32_A 141 ETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHIDYLISSANKCIQG-VPGFAFVIAREQKLAACK 215 (366)
T ss_dssp ETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CSSEEEEEEEHHHHTTCT
T ss_pred cCCcceecCHHHHHHHHHHcCCEEEEECCccccC--cCccccccCccEEEecCcccccC-CCceEEEEECHHHHHhhc
Confidence 99999999997 4577899999999999999886 57888878899999999998866 889999999987665543
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-22 Score=212.34 Aligned_cols=178 Identities=11% Similarity=0.121 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
.+.++++|+.+++++|++++. .++||.|+|+|+.+++.++ +++||+|++.. ..|.+.. +...++..|++++.+|++
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~-~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~-~~~~~~~-~~~~~~~~g~~~~~v~~~ 118 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRW-AYPIDGTSRAGIEAVLASV-IEPEDDVLIPI-YGRFGYL-LTEIAERYGANVHMLECE 118 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSE-EEEEESCHHHHHHHHHHHH-CCTTCEEEEEE-SSHHHHH-HHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCc-EEEecCcHHHHHHHHHHHh-cCCCCEEEEec-CCcccHH-HHHHHHhcCCeeEEEecC
Confidence 467889999999999998653 3459999999999999988 78999988763 3344322 556677889999999998
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
. ++.++.++|+++|... ++++|++++.+|.||.+.|++ +.+.|+++|+++++|++|+.|. .++++...+
T Consensus 119 ~-~~~~d~~~l~~~i~~~-------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~ 188 (416)
T 3isl_A 119 W-GTVFDPEDIIREIKKV-------KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGG--CEVKVDEWK 188 (416)
T ss_dssp T-TCCCCHHHHHHHHHHH-------CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTT
T ss_pred C-CCCCCHHHHHHHHhhC-------CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccC--CCcchhhcC
Confidence 6 5688999999999732 479999999999999999997 4567899999999999999886 688998899
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+|++++|+||++++ |.|+|+++++++.++.+.+
T Consensus 189 ~d~~~~s~~K~l~g-~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 189 IDAAIGGTQKCLSV-PSGMAPITYNERVADVIAA 221 (416)
T ss_dssp CSEEECCSSSTTCC-CSSEEEEEECHHHHHHHHT
T ss_pred CCEEEecCccccCC-CCCeEEEEECHHHHHHhhc
Confidence 99999999998655 8899999999998877765
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-22 Score=208.89 Aligned_cols=210 Identities=14% Similarity=0.025 Sum_probs=167.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
..||++.+-.++++.+++++.+. +. .+..+.......++|+.+++++|++.. +.|+||+|+|+|+
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~-----------~~---~~~~~~~~~~~~~l~~~la~~~~~~~~-~~v~~~~gg~~al 87 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLR-----------MI---GHMQKEMLQIMEEIKQGIQYVFQTRNP-LTLVVSGSGHCAM 87 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCC-----------CC---CTTSHHHHHHHHHHHHHHHHHHTCCCS-EEEEESCCTTTHH
T ss_pred cceeccCCCCCCCHHHHHHhccc-----------cc---CcccHHHHHHHHHHHHHHHHHhCCCCC-cEEEEeCCcHHHH
Confidence 45888888888999998875321 00 112233346778999999999999753 3699999999999
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV 309 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~ 309 (872)
.+++.++ +++|++|++.. +.|-+. .+...++..|+++..+|++. ++.++.++|+++|... ++++|++++
T Consensus 88 ~~~~~~~-~~~gd~vl~~~-~~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~-------~~~~v~~~~ 156 (393)
T 3kgw_A 88 ETALFNL-LEPGDSFLTGT-NGIWGM-RAAEIADRIGARVHQMIKKP-GEHYTLQEVEEGLAQH-------KPVLLFLVH 156 (393)
T ss_dssp HHHHHHH-CCTTCEEEEEE-SSHHHH-HHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-------CCSEEEEES
T ss_pred HHHHHhc-CCCCCEEEEEe-CCchhH-HHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHhhC-------CCcEEEEec
Confidence 9999988 78999987762 222111 24556777899999999976 4678999999999752 488999999
Q ss_pred ccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 310 QSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 310 vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.+|.||.++|++ +.+.|+++|+++++|++|..|. .++++...++|++++|+||+|++ |.|+|+++++++.++.+.+
T Consensus 157 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 157 GESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGG--VPIYMDQQGIDIMYSSSQKVLNA-PPGISLISFNDKAKYKVYS 233 (393)
T ss_dssp EETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCCEEEEESSSTTCC-CSSCEEEEECHHHHHHHHT
T ss_pred cCCcchhhccHHHHHHHHHHcCCEEEEECCccccC--cccchhhcCCCEEEecCcccccC-CCceeEEEECHHHHHHHhc
Confidence 999999999997 5678899999999999998775 58888888999999999998866 7899999999988776654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=207.09 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=161.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE-eCCHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF-TVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF-TsnATeA 228 (872)
.+|+-+.+-.++|+.+++++.+. +. .+..+.....++++|+.+++++|++++ ++++| |+|+|+|
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~-----------~~---~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~i~~~~ggt~a 83 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQ-----------VP---YFRTTEFSSTMLENEKFMLEYAKAPEG-SKAVFMTCSSTGS 83 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSC-----------CC---CCSSHHHHHHHHHHHHHHHHHHTCCTT-CEEEEESSCHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCC-----------CC---CCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCChhHH
Confidence 45666677788888888875431 11 112233346788999999999999754 34555 8999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+++++.++ .++||+|++.....+. ..+...+...|+++..++++. +..++.++|++++. +++++|+++
T Consensus 84 l~~~~~~~-~~~gd~vi~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~--------~~~~~v~~~ 151 (376)
T 3f0h_A 84 MEAVVMNC-FTKKDKVLVIDGGSFG--HRFVQLCEIHEIPYVALKLEH-GKKLTKEKLYEYDN--------QNFTGLLVN 151 (376)
T ss_dssp HHHHHHHH-CCTTCCEEEEESSHHH--HHHHHHHHHTTCCEEEEECCT-TCCCCHHHHHTTTT--------SCCCEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEEeCChhh--HHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHhhc--------cCceEEEEe
Confidence 99999887 4789998766321122 123455677899999999875 46789998877543 368999999
Q ss_pred CccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 309 VQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 309 ~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+.+|.||.++|++. .+.|+++|+++++|++|..+. .++++...++|++++|+||+||+ |.|+|+++++++.++.+.
T Consensus 152 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~G~g~~~~~~~~~~~~~ 228 (376)
T 3f0h_A 152 VDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA--DPFNMNECGADVMITGSQKVLAC-PPGISVIVLAPRGVERVE 228 (376)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTCSEEEEETTTTTCC-CSSCEEEEECHHHHHHHH
T ss_pred cccCCcceecCHHHHHHHHHHcCCEEEEEcCccccC--ccccccccCccEEEecCcccccC-CCceEEEEECHHHHHHhh
Confidence 99999999999985 567899999999999999886 57888778899999999999997 789999999998776665
Q ss_pred C
Q 002866 388 N 388 (872)
Q Consensus 388 P 388 (872)
+
T Consensus 229 ~ 229 (376)
T 3f0h_A 229 K 229 (376)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=206.99 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=162.1
Q ss_pred hHHHHHhhcccCC---CCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhc
Q 002866 135 KIDQLRANEYLHL---SPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHL 210 (872)
Q Consensus 135 ~ID~lR~~EFP~L---~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lL 210 (872)
.++.+++.-.|.. ....||||.++++.++.+++++.. ... +. +...|+. |....+.+.+|+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~-------~~~-n~-~~~~~~~~~~~~~le~~~~~~la~~~ 153 (497)
T 2qma_A 83 VIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMI-------AAL-NQ-SMDSWDQASSATYVEQKVVNWLCDKY 153 (497)
T ss_dssp HHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHH-------HHH-CC-CTTCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHH-------Hhh-cc-cccchhhChHHHHHHHHHHHHHHHHh
Confidence 4566665444543 336899999999999999887532 111 21 1112332 333456667799999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHhhCC---------C---CC------CC-eEEEecccCchhHHHHHHHHHHcCc---E
Q 002866 211 NIPENEYGLVFTVSRGSAFKLLAESYP---------F---HT------NK-KLLTMFDYESQSVNWMAQSAKEKGA---K 268 (872)
Q Consensus 211 gA~~dEY~VVFTsnATeALnLVaeslp---------f---~~------Gd-~ILT~~DhEHnSVl~~~~~AkrkGa---e 268 (872)
|+++. ..++||+|+|+|+.+++.+.. | .+ |+ .|+++ +..|.++... ++..|. +
T Consensus 154 g~~~~-~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s-~~~h~s~~~~---~~~~g~g~~~ 228 (497)
T 2qma_A 154 DLSEK-ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCS-KKSHFTVQKS---ASWMGLGEKA 228 (497)
T ss_dssp TCCTT-CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEE-TTSCTHHHHH---HHHTTSCGGG
T ss_pred CCCCC-CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEEC-CCchHHHHHH---HHHcCCCccc
Confidence 99752 369999999999988766521 1 12 35 45555 4466766533 333444 7
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
++.+|++. ++.++.++|+++|..... ...++.+|++++.+|.||.+.|++. .+.|+++|+++|||+|+.++. .+
T Consensus 229 v~~v~~~~-~~~~d~~~L~~~i~~~~~--~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~--~~ 303 (497)
T 2qma_A 229 VMTVDANA-DGTMDITKLDEVIAQAKA--EGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGAL--IL 303 (497)
T ss_dssp EEEECBCT-TSSBCGGGHHHHHHHHHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GG
T ss_pred EEEEecCC-CCcCCHHHHHHHHHHHHH--CCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHH--Hh
Confidence 99999975 688999999999975321 1112348999999999999999985 567899999999999998876 44
Q ss_pred CC----CCCC-CCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 348 LG----LSLF-RPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 348 LD----Ls~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
.+ +..+ ++|++++|+|||++. |.|+|+|++++..
T Consensus 304 ~~~~~~~~gi~~~D~i~~s~hK~l~~-p~~~G~l~~~~~~ 342 (497)
T 2qma_A 304 SSHKSRLKGVERAHSISVDFHKLFYQ-TISCGALLVNDKS 342 (497)
T ss_dssp STTGGGGTTGGGCSEEEEETTTTTCC-CSSCEEEEESCGG
T ss_pred CcchHhhcCcccCCEEEEcchhccCC-CcceEEEEEeCHH
Confidence 44 3344 789999999999988 8999999998764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=205.60 Aligned_cols=176 Identities=10% Similarity=0.041 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcC--cEEEEE
Q 002866 195 KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKG--AKVYSA 272 (872)
Q Consensus 195 S~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkG--aeV~~V 272 (872)
..+.++++|+.+++++|++ + .|+||+|+|+|+++++..+ .+|++||+... .|.+. .+...++..| +++..+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~-~~~~~-~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRN-GWFSY-RWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEEC-SHHHH-HHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeC-CchhH-HHHHHHHHhCCCCceEEE
Confidence 3478899999999999997 3 6999999999999988765 58999876532 33333 3445556666 488888
Q ss_pred eccCCC--------CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HHH-HHHHHHCCcEEEeecccc
Q 002866 273 WFKWPT--------LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQW-MALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 273 pvd~p~--------g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le~-I~~Are~G~~VLVDAAQ~ 340 (872)
++++.. ..++.++++++|... ++++|++++++|.||.++| ++. .+.|+++|+++++|++|+
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-------~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~ 178 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKED-------KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS 178 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHH-------TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhc-------CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 875311 257999999998632 4789999999999999999 864 467899999999999998
Q ss_pred CCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 341 GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 341 aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|. .++++..+++|++++|+||++|+ |.|+|+|+++++.++.+.+
T Consensus 179 -g~--~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~~~~~l~~ 222 (379)
T 3ke3_A 179 -GC--VWLDMKELGIDVLISAPQKGWSS-TPCAGLVMLSAAAIKKVES 222 (379)
T ss_dssp -TT--CCCCHHHHTCSEEEECTTTTTCS-CCCEEEEEECHHHHHHHHT
T ss_pred -CC--ccccccccCCCEEEecchhhcCC-CCceEEEEECHHHHHhhhc
Confidence 75 68898888999999999999988 8999999999988776654
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=209.91 Aligned_cols=211 Identities=15% Similarity=0.036 Sum_probs=155.0
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
..||||..+++.|..++..+. ... .+.. ...|. .|...+++.++|+.+++++|++++ .++||+|+|+|
T Consensus 109 p~~~~~~~~~~~~~~~~~~~l-------~~~-~n~~-~~~~~~s~~~~~le~~~~~~la~l~g~~~~--~~~~t~ggtea 177 (515)
T 2jis_A 109 PRFFNQLFSGLDPHALAGRII-------TES-LNTS-QYTYEIAPVFVLMEEEVLRKLRALVGWSSG--DGIFCPGGSIS 177 (515)
T ss_dssp TTEESSSCCCCCHHHHHHHHH-------HHH-HCCC-TTCTTTCHHHHHHHHHHHHHHHHHHTCSSC--EEEEESSHHHH
T ss_pred CCeEEEeeCCCCHHHHHHHHH-------HHH-hccC-CCchhhchHHHHHHHHHHHHHHHHhCCCCC--CeEEcCCcHHH
Confidence 579999999988877765421 111 1110 00121 233346788899999999999854 69999999999
Q ss_pred HHHHHhhCC------CC-CCC------eEEEecccCchhHHHHHHHHHHcCc---EEEEEeccCCCCccCHHHHHHHHhh
Q 002866 229 FKLLAESYP------FH-TNK------KLLTMFDYESQSVNWMAQSAKEKGA---KVYSAWFKWPTLKLCSTDLRKQISS 292 (872)
Q Consensus 229 LnLVaeslp------f~-~Gd------~ILT~~DhEHnSVl~~~~~AkrkGa---eV~~Vpvd~p~g~Id~edLe~~I~~ 292 (872)
+.++..... ++ +|+ .|+++ +..|.++... ++..|+ +++.+|++. ++.++.++|+++|..
T Consensus 178 ~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s-~~~h~s~~~~---~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~ 252 (515)
T 2jis_A 178 NMYAVNLARYQRYPDCKQRGLRTLPPLALFTS-KECHYSIQKG---AAFLGLGTDSVRVVKADE-RGKMVPEDLERQIGM 252 (515)
T ss_dssp HHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEE-TTSCTHHHHH---HHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHhhcCccccCCeEEEEC-CCccHHHHHH---HHHcCCCCCcEEEEecCC-CCcCCHHHHHHHHHH
Confidence 776655431 12 354 55555 4457776543 334465 899999975 688999999999975
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCC-----CCCC-CCcEEEEccccc
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLG-----LSLF-RPDFIITSFYRV 365 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLD-----Ls~l-~~DFlv~S~HK~ 365 (872)
... .+.++++|++++.+|.||.+.|++. .+.|+++|+++|||+++.++. .+.+ +..+ ++|++++|+|||
T Consensus 253 ~~~--~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~--~~~~~~~~~~~g~~~aD~v~~s~hK~ 328 (515)
T 2jis_A 253 AEA--EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV--LLSQTHRHLLDGIQRADSVAWNPHKL 328 (515)
T ss_dssp HHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTTGGGCSEEEECTTST
T ss_pred HHh--CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHH--HhChhhHhhcCCCccCCEEEECcccc
Confidence 321 1224899999999999999999985 567899999999999998876 4444 4444 899999999999
Q ss_pred CCCCCCceEEEEEeCC
Q 002866 366 FGFDPTGFGCLLIKKS 381 (872)
Q Consensus 366 fG~~PtGvG~LyVRk~ 381 (872)
||+ |.|+|+|++|+.
T Consensus 329 l~~-p~g~G~l~~~~~ 343 (515)
T 2jis_A 329 LAA-GLQCSALLLQDT 343 (515)
T ss_dssp TCC-CSCCEEEEESCC
T ss_pred cCC-CCCeeEEEEeCh
Confidence 988 899999999987
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=203.00 Aligned_cols=215 Identities=14% Similarity=0.062 Sum_probs=151.4
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
..||+|..+++.|..++..+.. .++..+. ..|. .|....+.+++++.+++++|++.+...++||+|+|+|
T Consensus 93 p~~~~~~~~~~~~~~~~~~~l~------~~~n~~~---~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea 163 (504)
T 2okj_A 93 PRFFNQLSTGLDIIGLAGEWLT------STANTNM---FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAIS 163 (504)
T ss_dssp TTEESSSSCCCCHHHHHHHHHH------HHHCCBS---SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHH
T ss_pred CCEEEEccCCCCHHHHHHHHHH------HhhccCC---CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHH
Confidence 5699999888777665432210 0111110 1122 2323455677789999999997323369999999999
Q ss_pred HHHHHhhCCC-------CCC-----C-eEEEecccCchhHHHHHHHHHHcCc-EEEEEeccCCCCccCHHHHHHHHhhhh
Q 002866 229 FKLLAESYPF-------HTN-----K-KLLTMFDYESQSVNWMAQSAKEKGA-KVYSAWFKWPTLKLCSTDLRKQISSKK 294 (872)
Q Consensus 229 LnLVaeslpf-------~~G-----d-~ILT~~DhEHnSVl~~~~~AkrkGa-eV~~Vpvd~p~g~Id~edLe~~I~~~~ 294 (872)
+.+++.++.. ++| + .|+++ +..|.++......+. .|. +++.+|++. ++.++.++|+++|....
T Consensus 164 ~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s-~~~h~s~~~~~~~~g-~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~ 240 (504)
T 2okj_A 164 NMYSIMAARYKYFPEVKTKGMAAVPKLVLFTS-EQSHYSIKKAGAALG-FGTDNVILIKCNE-RGKIIPADFEAKILEAK 240 (504)
T ss_dssp HHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEE-TTSCTHHHHHHHHTT-SCGGGEEEECBCT-TSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHhhcCccccCCeEEEEC-CcchHHHHHHHHHcC-CCcccEEEEecCC-CCCCCHHHHHHHHHHHH
Confidence 9887766421 135 5 45554 456777654333221 243 899999975 68999999999997532
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc-----CCCCCC-CCcEEEEcccccCC
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS-----LGLSLF-RPDFIITSFYRVFG 367 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip-----LDLs~l-~~DFlv~S~HK~fG 367 (872)
. ...++++|++++.+|.||.+.|++. .+.|+++|+++|||+|+.++. .. .++..+ ++|++++++|||||
T Consensus 241 ~--~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~--~~~~~~~~~~~g~~~~D~i~~~~hK~~~ 316 (504)
T 2okj_A 241 Q--KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL--LMSRKHRHKLNGIERANSVTWNPHKMMG 316 (504)
T ss_dssp H--TTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTTGGGCSEEEECTTSTTC
T ss_pred H--CCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHH--HhCHhhHhhcCCcccCCEEEECchhhcC
Confidence 1 1224899999999999999999974 567899999999999988765 22 234433 79999999999999
Q ss_pred CCCCceEEEEEeCC
Q 002866 368 FDPTGFGCLLIKKS 381 (872)
Q Consensus 368 ~~PtGvG~LyVRk~ 381 (872)
. |.|+|+|++|+.
T Consensus 317 ~-p~~~g~l~~~~~ 329 (504)
T 2okj_A 317 V-LLQCSAILVKEK 329 (504)
T ss_dssp C-CSCCEEEEESST
T ss_pred C-CcceEEEEEECH
Confidence 8 899999999985
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=188.39 Aligned_cols=203 Identities=12% Similarity=-0.008 Sum_probs=153.0
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc----hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE----KGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps----S~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
..||.++.+.+.| .+++++.+ .+. ..++++. ..+..+++|+.+++++|++++ .|+||+|+
T Consensus 32 ~~~~~~~~~~~~~-~v~~a~~~-----------~~~--~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~i~~~~gg 95 (397)
T 3f9t_A 32 GNIFGSMCSNVLP-ITRKIVDI-----------FLE--TNLGDPGLFKGTKLLEEKAVALLGSLLNNKDA--YGHIVSGG 95 (397)
T ss_dssp TCBCSCSCCCCCT-HHHHHHHH-----------HTT--CCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTC--EEEEESCH
T ss_pred CCeEEEecCCCcH-HHHHHHHH-----------HHh--hcCCCcccChhHHHHHHHHHHHHHHHhCCCCC--CEEEecCc
Confidence 3799988665544 56666432 111 1223332 246778999999999999876 59999999
Q ss_pred HHHHHHHHhhCCC------------CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhh
Q 002866 226 GSAFKLLAESYPF------------HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSK 293 (872)
Q Consensus 226 TeALnLVaeslpf------------~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~ 293 (872)
|+|+.+++..+.. .+|++|++.. ..|.++. ..++..|++++.+|++. ++.++.++|+++|...
T Consensus 96 t~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~-~~~~~~~---~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~ 170 (397)
T 3f9t_A 96 TEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI-TAHFSFE---KGREMMDLEYIYAPIKE-DYTIDEKFVKDAVEDY 170 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET-TCCTHHH---HHHHHHTCEEEEECBCT-TSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC-cchhHHH---HHHHHcCceeEEEeeCC-CCcCCHHHHHHHHhhc
Confidence 9999998877632 2478888764 3455443 44555799999999986 5788999999999741
Q ss_pred hccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC---C---------CccCCCCCCCCcEEEE
Q 002866 294 KRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK---D---------MDSLGLSLFRPDFIIT 360 (872)
Q Consensus 294 ~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~---~---------mipLDLs~l~~DFlv~ 360 (872)
++++|++.+.+|.||.+.|++ +++.|+++|+++++|.++..+. . ..++++.. ++|++++
T Consensus 171 -------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 242 (397)
T 3f9t_A 171 -------DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITI 242 (397)
T ss_dssp -------CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEEC
T ss_pred -------CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEE
Confidence 478999999999999999998 4567899999999999987432 0 01566666 8999999
Q ss_pred cccccCCCCCCceEEEEEeCCC
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
|+||++++ |.++|++++++..
T Consensus 243 s~~K~~~~-~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 243 DPHKMGHC-PIPSGGILFKDIG 263 (397)
T ss_dssp CTTTTTCC-CSSCEEEEESSGG
T ss_pred ccccccCC-CCCceEEEEeCHH
Confidence 99999876 7899999997764
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=199.15 Aligned_cols=207 Identities=15% Similarity=0.220 Sum_probs=148.1
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC----CCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG----GAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg----NpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
.+|+++++..++|+.+++++.+. . ... .+.. ...|+ .+.....++++|+.+++++|++. .+.|+||+|+
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~--~--~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~~v~~~~g~ 75 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKE--L--LNF-NDTQ-MSVMELSHRSQSYEEVHEQAQNLLRELLQIPN-DYQILFLQGG 75 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHT--S--SSS-TTSS-SCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSH
T ss_pred ceEeecCCCcCCCHHHHHHHHHH--h--hhh-cccc-ccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEECCc
Confidence 47999999999999999885431 0 000 0000 01111 22234578899999999999962 2369999999
Q ss_pred -HHHHHHHHhhCCC--CCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHH-HHhhhhccCCCCC
Q 002866 226 -GSAFKLLAESYPF--HTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRK-QISSKKRRKKDSA 301 (872)
Q Consensus 226 -TeALnLVaeslpf--~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~-~I~~~~rr~~~~~ 301 (872)
|+|+.+++.++.. ++|+.|++. .+.|.++ ..++..| +++.++++..++.++.++|++ +|. ++
T Consensus 76 gt~al~~~~~~l~~~~~~g~~vi~~-~~~~~~~----~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~--------~~ 141 (360)
T 1w23_A 76 ASLQFTMLPMNLLTKGTIGNYVLTG-SWSEKAL----KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN--------EN 141 (360)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEECS-HHHHHHH----HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC--------TT
T ss_pred chHHHHHHHHHhcCCCCcccEEEec-chhHHHH----HHHHHhC-CeEEeecccccCcCCccchHhhccC--------CC
Confidence 9999998887643 234445543 3344432 2356679 999999864345567777765 442 36
Q ss_pred ceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
|++|++++.+|.||.++| + | ++++|+++++|++|..+. .++++..+ |++++|+||+|| |.|+|+++++++
T Consensus 142 ~k~v~~~~~~nptG~~~~-~-i--~~~~~~~li~D~a~~~~~--~~~~~~~~--di~~~s~sK~~~--~~G~G~~~~~~~ 211 (360)
T 1w23_A 142 DAYLHITSNNTIYGTQYQ-N-F--PEINHAPLIADMSSDILS--RPLKVNQF--GMIYAGAQKNLG--PSGVTVVIVKKD 211 (360)
T ss_dssp EEEEEEESEETTTTEECS-S-C--CCCCSSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTS--CTTCEEEEEEHH
T ss_pred CCEEEEeCCCCCcceecc-c-c--cccCCceEEEechhhcCC--CCcCcccC--CEEEEEcccccC--CCCcEEEEEcHH
Confidence 899999999999999998 2 2 237999999999999886 57777665 999999999998 679999999987
Q ss_pred Cccccc
Q 002866 382 VMGSLQ 387 (872)
Q Consensus 382 ~i~~L~ 387 (872)
.++.+.
T Consensus 212 ~~~~~~ 217 (360)
T 1w23_A 212 LLNTKV 217 (360)
T ss_dssp HHCSCC
T ss_pred HHhhcc
Confidence 765554
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=193.02 Aligned_cols=175 Identities=13% Similarity=-0.003 Sum_probs=135.7
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCC---CcEEEeCCHHHHHHHHHhhCCC-------CCC-----CeEEEecccCchhHHH
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENE---YGLVFTVSRGSAFKLLAESYPF-------HTN-----KKLLTMFDYESQSVNW 257 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dE---Y~VVFTsnATeALnLVaeslpf-------~~G-----d~ILT~~DhEHnSVl~ 257 (872)
|...++.+++++.+++++|+++++ ..++||+|+|+|+.+++.++.. .+| ++||++ + .|.++.
T Consensus 77 ~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~-~-~h~~~~- 153 (452)
T 2dgk_A 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG-P-VQICWH- 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEES-S-CCHHHH-
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEC-C-CcHHHH-
Confidence 333467889999999999998642 2599999999999987665421 033 467766 4 676554
Q ss_pred HHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHC------C
Q 002866 258 MAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQN------H 330 (872)
Q Consensus 258 ~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~------G 330 (872)
..++..|++++.+|++..++.++.++|+++|.. +|++|++++.+|.||++.|++.| +.|+++ |
T Consensus 154 --~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~--------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~ 223 (452)
T 2dgk_A 154 --KFARYWDVELREIPMRPGQLFMDPKRMIEACDE--------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 223 (452)
T ss_dssp --HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT--------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHcCceEEEEecCCCCCeECHHHHHHHHhh--------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCC
Confidence 445668999999999754578999999988853 48999999999999999999854 567874 9
Q ss_pred cEEEeeccccCCC-----CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 331 WHVLLDAGSLGPK-----DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 331 ~~VLVDAAQ~aG~-----~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++++||+|+..+. ...++++...++|++++|+|||+++ |.|+|++++|+.
T Consensus 224 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~G~~~~~~~ 278 (452)
T 2dgk_A 224 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDE 278 (452)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSG
T ss_pred CcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCC-CCCeEEEEEcCH
Confidence 9999999987642 0124566556899999999998766 899999999864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=196.50 Aligned_cols=215 Identities=13% Similarity=0.008 Sum_probs=163.9
Q ss_pred Cceeccc-CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-----CchHHHHHHHHHH-HHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDY-CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-----AEKGTVEHDIKTR-IMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDy-AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-----psS~~~ieeARer-IA~lLgA~~dEY~VVF 221 (872)
.++|||+ ++.+++++.+++++.+. +.. ... ..+++ ......+.++|+. +++++|++ .|+|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~-------~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~----~v~~ 74 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEW-------GDG-YSV-CDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD----VARV 74 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC-----------------------------CCHHHHHHTHHHHHTTSS----EEEE
T ss_pred CcEEecccccCCCCCHHHHHHHHHH-------Hhh-ccc-CCccccccchhhHHHHHHHHHHHHHHHHcCCC----EEEE
Confidence 4899999 55888899998876431 111 000 00111 1112456789999 99999986 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe--ccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW--FKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp--vd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|+|+|+.+++.++ +++|++|++.. ..|.++... ++..|++++.+| ++. ++.++.++|+++|..... .
T Consensus 75 ~~g~t~a~~~~~~~~-~~~gd~vl~~~-~~~~~~~~~---~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~---~ 145 (371)
T 2e7j_A 75 TNGAREAKFAVMHSL-AKKDAWVVMDE-NCHYSSYVA---AERAGLNIALVPKTDYP-DYAITPENFAQTIEETKK---R 145 (371)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEET-TCCHHHHHH---HHHTTCEEEEECCCCTT-TCCCCHHHHHHHHHHHTT---T
T ss_pred eCChHHHHHHHHHHH-hCCCCEEEEcc-CcchHHHHH---HHHcCCeEEEeecccCC-CCCcCHHHHHHHHHhhcc---c
Confidence 999999999999988 67899988763 345544433 566899999999 765 467899999999874310 1
Q ss_pred CCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+++++|++++.+|.||.++|++ +++.|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.|+|++++
T Consensus 146 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~~~~-~~~~G~~~~ 222 (371)
T 2e7j_A 146 GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGSGHKSMAA-SGPIGVMGM 222 (371)
T ss_dssp SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEEHHHHSSC-CSSCEEEEE
T ss_pred CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC--CCCChhhcCCCEEEecCCcCCCC-CCCcEEEEE
Confidence 3689999999999999999997 5577899999999999999886 46777777899999999998887 779999999
Q ss_pred eCCCccc-ccC
Q 002866 379 KKSVMGS-LQN 388 (872)
Q Consensus 379 Rk~~i~~-L~P 388 (872)
+++.++. +.+
T Consensus 223 ~~~~~~~~~~~ 233 (371)
T 2e7j_A 223 KEEWAEIVLRR 233 (371)
T ss_dssp CTTTTTTTTCB
T ss_pred echhhhhhccc
Confidence 9987776 654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=199.16 Aligned_cols=167 Identities=14% Similarity=0.039 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH---HHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRG---SAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYS 271 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnAT---eALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~ 271 (872)
.+.++++|+.+++++|++++ +|+||.|+| +++.+++ .+++|++|++.. ..|.++. .|+..++..|++++.
T Consensus 107 ~~~~~~~~~~la~~~g~~~~--~i~~~~g~taa~ea~~~a~---~~~~gd~Viv~~-~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIA--NASMYDGATALAEGVLLAL---RETGRMGVLVSQ-GVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHHHHH---HHHTCCEEEEET-TSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcc--ceEEeCcHHHHHHHHHHHH---hcCCCCEEEEcC-ccCHhHHHHHHHHHHHCCCEEEE
Confidence 46789999999999999765 489999999 6665544 346789988763 4566664 556667778999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeecc-ccCCCCCccCC
Q 002866 272 AWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAG-SLGPKDMDSLG 349 (872)
Q Consensus 272 Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAA-Q~aG~~mipLD 349 (872)
++.+ ++.++.++ |. ++|++|++++. |.||.+.|++ +++.||++|+++++|+. ++.|. ...+
T Consensus 181 v~~~--~~~~d~~~----i~--------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~~~~ 243 (438)
T 1wyu_A 181 LPLE--GGRTPLPE----VG--------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--LKPP 243 (438)
T ss_dssp ECCB--TTBCCCCC----CC--------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--BCCH
T ss_pred EcCc--CCccCHHH----hC--------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--cCCC
Confidence 9873 35666554 32 35899999997 9999999997 55778999999997765 54553 2333
Q ss_pred CCCCCCcEEEEcccc-----cCCCCCCceEEEEEeCCCcccccC
Q 002866 350 LSLFRPDFIITSFYR-----VFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK-----~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
..+++|++++|+|| |+|+ | |+|+|+++++.+..+.+
T Consensus 244 -~~~g~D~~~~s~kk~~~~~~~~G-p-~~G~l~~~~~~~~~l~~ 284 (438)
T 1wyu_A 244 -GAYGADIAVGDGQSLGLPMGFGG-P-HFGFLATKKAFVRQLPG 284 (438)
T ss_dssp -HHHTCSEEEEECTTTTCCCGGGC-S-CCEEEEECGGGGGGCCS
T ss_pred -ccCCCCEEEECCcccCCCccCCC-C-CeeEEEEcHHHHHhCCC
Confidence 45789999999888 6677 8 99999999987776643
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=193.95 Aligned_cols=204 Identities=11% Similarity=0.061 Sum_probs=143.8
Q ss_pred CCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE-eCCHH
Q 002866 148 SPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF-TVSRG 226 (872)
Q Consensus 148 ~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF-TsnAT 226 (872)
.+.+|+++++.+++|+.+++++.+ + ...+. ......|...+.++++|+.+++++|+++ .+.|+| |+|+|
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~---~-----~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~i~~~t~g~t 107 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTT---T-----AAALF-GTSHRQAPVKNLVGRVRSGLAELFSLPD-GYEVILGNGGAT 107 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGT---T-----TTTTT-TSCTTSHHHHHHHHHHHHHHHHHTTCCT-TCEEEEEETCHH
T ss_pred ccCCccccCCCCCCCHHHHHHHhh---c-----CCCcc-CcCcCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEeCCchh
Confidence 446899999999999999987543 0 00000 0001123334578899999999999973 236999 99999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHc--CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEK--GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akrk--GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
+|+++++.++ +++| .+++.. .+|... +...+... |++++.+++++ +.+...+ + +++|++
T Consensus 108 ~al~~~~~~l-~~~g-v~~v~~-~~~~~~--~~~~~~~~~~g~~~~~v~~~~--g~~~~~~----i--------~~~~~~ 168 (398)
T 2fyf_A 108 AFWDAAAFGL-IDKR-SLHLTY-GEFSAK--FASAVSKNPFVGEPIIITSDP--GSAPEPQ----T--------DPSVDV 168 (398)
T ss_dssp HHHHHHHHHT-CSSC-EEEEEC-SHHHHH--HHHHHHHCTTSCCCEEEECCT--TCCCCCC----C--------CTTCSE
T ss_pred HHHHHHHHHh-cCCC-eEEEeC-CHHHHH--HHHHHHHhCCCCceEEEecCC--CCCCCcc----c--------cCCCCE
Confidence 9999999998 5565 222222 223222 12234555 88999999873 2222111 2 236899
Q ss_pred EEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 305 FVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
|++++.+|.||+++|++.+... +|+++++|++|..+. .++++. ++|++++|+||+||. |.|+|+++++++.++
T Consensus 169 v~~~~~~nptG~~~~~~~i~~~--~~~~vivD~a~~~~~--~~~~~~--~~di~~~s~sK~~~~-~gg~g~l~~~~~~~~ 241 (398)
T 2fyf_A 169 IAWAHNETSTGVAVAVRRPEGS--DDALVVIDATSGAGG--LPVDIA--ETDAYYFAPQKNFAS-DGGLWLAIMSPAALS 241 (398)
T ss_dssp EEEESEETTTTEECCCCCCTTC--C-CEEEEECTTTTTT--SCCCGG--GCSEEEECTTSTTCS-CSSEEEEEECHHHHH
T ss_pred EEEeCcCCCcceecchHHhhhh--cCCeEEEEeccccCC--cccCcc--cCcEEEEecCcccCC-CCceEEEEECHHHHH
Confidence 9999999999999999865444 899999999999886 577775 489999999999996 557999999988766
Q ss_pred ccc
Q 002866 385 SLQ 387 (872)
Q Consensus 385 ~L~ 387 (872)
.++
T Consensus 242 ~l~ 244 (398)
T 2fyf_A 242 RIE 244 (398)
T ss_dssp HHH
T ss_pred Hhh
Confidence 553
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-18 Score=193.02 Aligned_cols=208 Identities=13% Similarity=0.018 Sum_probs=151.3
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCC--CCC-CcEEEeCCHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIP--ENE-YGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~--~dE-Y~VVFTsnAT 226 (872)
.++|....++++++.+.+++.+ .+..+.. .....|...++.+++++.+++++|++ +++ ..-+||+|+|
T Consensus 57 ~~~l~s~~t~~~~~~v~~~l~~-------~~~~~~~--~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggt 127 (502)
T 3hbx_A 57 RLNLASFVTTWMEPECDKLIMS-------SINKNYV--DMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS 127 (502)
T ss_dssp GGBTTCCSCCCCCHHHHHHHHH-------TTTCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHH
T ss_pred CceeccccCCCCCHHHHHHHHH-------HhccCCC--ChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHH
Confidence 4455555567777777776432 1111110 01122334567788999999999998 433 2234799999
Q ss_pred HHHHHHHhhCC--CC-----CCC-----eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhh
Q 002866 227 SAFKLLAESYP--FH-----TNK-----KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKK 294 (872)
Q Consensus 227 eALnLVaeslp--f~-----~Gd-----~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~ 294 (872)
+|+.+++.++. |. +|+ +||++ +..|.++ .+.++..|++++.+|++..++.+++++|+++|..
T Consensus 128 ea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~-~~~h~s~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-- 201 (502)
T 3hbx_A 128 EAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG-ANVQVCW---EKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE-- 201 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE-TTCCHHH---HHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT--
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc-CCchHHH---HHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh--
Confidence 99998776542 21 254 67765 4456654 4556678999999999875588999999988853
Q ss_pred ccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHC------CcEEEeecccc-------CCCCCccCCCCCCCCcEEEE
Q 002866 295 RRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQN------HWHVLLDAGSL-------GPKDMDSLGLSLFRPDFIIT 360 (872)
Q Consensus 295 rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~------G~~VLVDAAQ~-------aG~~mipLDLs~l~~DFlv~ 360 (872)
+|++|++++.+|.||.+.|++.| +.|+++ |++++||+|++ .+. .+.++...++|++++
T Consensus 202 ------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~--~~~~~~~~~~D~v~~ 273 (502)
T 3hbx_A 202 ------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE--LEWDFRLPLVKSINV 273 (502)
T ss_dssp ------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT--CCCSTTSTTEEEEEE
T ss_pred ------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcc--cccccCCCCceEEEE
Confidence 58999999999999999999854 567888 99999999987 333 466676678999999
Q ss_pred cccccCCCCCCceEEEEEeCC
Q 002866 361 SFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++|||+++ |.|+|++++++.
T Consensus 274 s~hK~l~~-p~g~G~~~~~~~ 293 (502)
T 3hbx_A 274 SGHKYGLV-YAGIGWVIWRNK 293 (502)
T ss_dssp ETTTTTCC-CSSCEEEEESSG
T ss_pred CcccccCC-CCCeEEEEEeCH
Confidence 99999877 899999999864
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-19 Score=191.27 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd 275 (872)
...+++|++|++++|++ .++||+|+|+|+++++.++ +++|++|++.. .+|.++. .+...++..|++++.++++
T Consensus 56 ~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 129 (412)
T 2cb1_A 56 PTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAK-GLFGQTIGLFGQVLSLMGVTVRYVDPE 129 (412)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEET-TCCHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred hHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeC-CCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 56789999999999985 4999999999999999988 67899988764 3555543 4444456679999988753
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
.++|+++|.. +|++|++++.+|+||.++|++. .+.|+++|+++++|++|..+. ...+.-..+
T Consensus 130 -------~~~l~~~i~~--------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~ 192 (412)
T 2cb1_A 130 -------PEAVREALSA--------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAG--ALCRPLAWG 192 (412)
T ss_dssp -------HHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTT--TSCCGGGGT
T ss_pred -------HHHHHHHhcc--------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--ccCCccccC
Confidence 6778777742 5899999999999999999984 567899999999999998872 122223468
Q ss_pred CcEEEEcccccCCCCCCc-eEEEEEeCCC
Q 002866 355 PDFIITSFYRVFGFDPTG-FGCLLIKKSV 382 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG-vG~LyVRk~~ 382 (872)
+|++++|+||+||+ |.+ +|++++.++.
T Consensus 193 ~di~~~S~~K~~~~-~~~~~G~~~~~~~~ 220 (412)
T 2cb1_A 193 AHVVVESLTKWASG-HGSVLGGAVLSRET 220 (412)
T ss_dssp CSEEEEETTTTTTC-SSCCCCEEEEECCC
T ss_pred CeEEEECCcccccC-CCCcEEEEEEeccc
Confidence 99999999999987 776 8999987743
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=202.64 Aligned_cols=206 Identities=10% Similarity=-0.008 Sum_probs=145.3
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc--CCCc---------hHHHHHHHHHHHHHhcCCCCCC-
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY--GGAE---------KGTVEHDIKTRIMDHLNIPENE- 216 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y--gNps---------S~~~ieeARerIA~lLgA~~dE- 216 (872)
..+.|. ++.+++|+.|++++.+. +.+ .| |+|. ..+.++.+|+++++++|+++++
T Consensus 45 ~~i~L~-a~e~~~~~~V~eA~~~~-----------l~~--~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~ 110 (483)
T 1rv3_A 45 VGLELI-ASENFASRAVLEALGSC-----------LNN--KYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCW 110 (483)
T ss_dssp SSEECC-TTCCCCCHHHHHHHTSG-----------GGT--CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTE
T ss_pred cCeEEE-cCCCCCCHHHHHHHHHH-----------Hhc--cCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccC
Confidence 356663 56678899999986431 111 12 3332 2356778999999999998654
Q ss_pred -CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHH----HHHHcC--cEEEEEeccCCCCccCHHHHHH
Q 002866 217 -YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQ----SAKEKG--AKVYSAWFKWPTLKLCSTDLRK 288 (872)
Q Consensus 217 -Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~----~AkrkG--aeV~~Vpvd~p~g~Id~edLe~ 288 (872)
..|+||+|+ +|+..+..++ +++||+||+.. .+|.++.. +.. .++..| +++..++++..++.++.++|++
T Consensus 111 ~~~V~~~sGs-~an~~~~~al-l~pGD~Vl~~~-~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~ 187 (483)
T 1rv3_A 111 GVNVQPYSGS-PANFAVYTAL-VEPHGRIMGLD-LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEE 187 (483)
T ss_dssp EEECCCSSHH-HHHHHHHHHH-TCTTCEEEEEC-GGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHH
T ss_pred ceEEEECCcH-HHHHHHHHHh-cCCCCEEEEec-CccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHH
Confidence 248888887 7777767777 68999988663 33444431 100 001113 4444444464467899999999
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC---CCcEEEEcccc
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF---RPDFIITSFYR 364 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l---~~DFlv~S~HK 364 (872)
++... +|++|++ +.+|.+ .++|++. .+.|+++|+++++|++|+.|. +..++... ++|++++|+||
T Consensus 188 ~i~~~-------~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~--~~~~~~~~p~~~~div~~s~~K 256 (483)
T 1rv3_A 188 NARLF-------HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGL--VVAGVVPSPFEHCHVVTTTTHK 256 (483)
T ss_dssp HHHHH-------CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHH--HHHTSSCCGGGTCSEEEEESSG
T ss_pred HHhhc-------CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcc--cccCCCCCCCCCCcEEEecCcc
Confidence 99732 4889999 889988 9999985 567899999999999998764 34454444 78999999999
Q ss_pred cCCCCCCceEEEEEeCCCcc
Q 002866 365 VFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 365 ~fG~~PtGvG~LyVRk~~i~ 384 (872)
+|++ |.| |+++++++...
T Consensus 257 ~l~G-prg-G~i~~~~~~~~ 274 (483)
T 1rv3_A 257 TLRG-CRA-GMIFYRRGVRS 274 (483)
T ss_dssp GGCC-CSC-EEEEEECSBCC
T ss_pred cCCC-CCc-eEEEEcchhhh
Confidence 9877 999 99999987543
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=172.88 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=157.4
Q ss_pred HhhCCCCCCchhHHHHHhhcccCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHH
Q 002866 124 LTMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDI 202 (872)
Q Consensus 124 L~~~p~y~~t~~ID~lR~~EFP~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeA 202 (872)
++..+.|.-+..+..+++ +|.. +..++|+.+.... .|+.+++++.+ .+. ..++.|. ....+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~-----------~~~--~~~~y~~--~~~~~l 72 (363)
T 3ffh_A 10 LAGLSSYKPGKREEEVMA-ELGL-TKITKLSSNENPLGTSKKVAAIQAN-----------SSV--ETEIYPD--GWASSL 72 (363)
T ss_dssp GTTCCC----CHHHHHHH-TTTC-SCCEECSSCSCTTCCCHHHHHHHHT-----------CBS--CCCBC------CHHH
T ss_pred HHhCCCCCCCCCHHHHHH-hcCC-CceEEccCCCCCCCCCHHHHHHHHH-----------HHH--HhhcCCC--cchHHH
Confidence 344455655556777765 4544 4689999875543 56777776432 111 1223333 245789
Q ss_pred HHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccC
Q 002866 203 KTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLC 282 (872)
Q Consensus 203 RerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id 282 (872)
|++||+++|++++ .|+||+|+|+|+++++.++ +++|++|++..- .|. .+...++..|++++.+|+++ ++.++
T Consensus 73 r~~la~~~~~~~~--~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~-~~~---~~~~~~~~~g~~~~~v~~~~-~~~~d 144 (363)
T 3ffh_A 73 RKEVADFYQLEEE--ELIFTAGVDELIELLTRVL-LDTTTNTVMATP-TFV---QYRQNALIEGAEVREIPLLQ-DGEHD 144 (363)
T ss_dssp HHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CSTTCEEEEEES-SCH---HHHHHHHHHTCEEEEEECCT-TSCCC
T ss_pred HHHHHHHhCCChh--hEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCC-ChH---HHHHHHHHcCCEEEEecCCC-CCCcC
Confidence 9999999999876 5999999999999999987 578999886632 233 34455677899999999986 57889
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHC--CcEEEeeccccC---CCCCccCCC-CCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQN--HWHVLLDAGSLG---PKDMDSLGL-SLFRP 355 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~--G~~VLVDAAQ~a---G~~mipLDL-s~l~~ 355 (872)
.++|++++.. ++++|.+++.+|.||.++|++.+. .++.. |+++++|.+|.. ++....+.. ...+.
T Consensus 145 ~~~l~~~i~~--------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 145 LEGMLNAIDE--------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKN 216 (363)
T ss_dssp HHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTT
T ss_pred HHHHHHhccc--------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCC
Confidence 9999988752 589999999999999999998554 45555 999999999872 110001111 12345
Q ss_pred cEEEEcccccCCCCCCce--EEEEEeCCCcccc
Q 002866 356 DFIITSFYRVFGFDPTGF--GCLLIKKSVMGSL 386 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGv--G~LyVRk~~i~~L 386 (872)
++++.|++|+|| +.|+ |+++++++.++.+
T Consensus 217 ~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l 247 (363)
T 3ffh_A 217 LIITRTFSKIYG--LASARVGYGIADKEIIRQL 247 (363)
T ss_dssp EEEEEESSSTTC--CSSCCCEEEEECHHHHHHH
T ss_pred EEEEeechhhhc--CchhceeeeecCHHHHHHH
Confidence 588899999998 4466 9999877665544
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-17 Score=182.79 Aligned_cols=230 Identities=10% Similarity=-0.047 Sum_probs=151.6
Q ss_pred hHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhc
Q 002866 135 KIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHL 210 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lL 210 (872)
.++.+++.-.|.... .-|+.|-.+++.++..+..+.. ..+..+ ...| ..|....+.+++.+.+++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~------~~~n~~---~~~~~~~p~~~~lE~~v~~~l~~~~ 126 (475)
T 3k40_A 56 VMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLS------GAIACI---GFTWIASPACTELEVVMMDWLGKML 126 (475)
T ss_dssp HHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHH------HHHCCC---SSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHH------HHhCcc---ccCccCCcHHHHHHHHHHHHHHHHh
Confidence 344455433344332 3477776555555554433211 111111 1122 23444577788999999999
Q ss_pred CCCCCC-------CcEEEeCCHHHHHHHHHhhCCC------------------CCCCeEEEecccCchhHHHHHHHHHHc
Q 002866 211 NIPENE-------YGLVFTVSRGSAFKLLAESYPF------------------HTNKKLLTMFDYESQSVNWMAQSAKEK 265 (872)
Q Consensus 211 gA~~dE-------Y~VVFTsnATeALnLVaeslpf------------------~~Gd~ILT~~DhEHnSVl~~~~~Akrk 265 (872)
|.+.+. ...+||+|+|+|+.+....... .++..|+++ +..|.++.. .++..
T Consensus 127 g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s-~~~H~s~~~---~~~~~ 202 (475)
T 3k40_A 127 ELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS-DQAHSSVER---AGLLG 202 (475)
T ss_dssp TCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEE-TTSCHHHHH---HHHHH
T ss_pred CCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEEC-CCchHHHHH---HHHHc
Confidence 997531 2589999999996554333210 012345555 556777654 34456
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCC
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
|++++.+|++. ++ +++++|+++|...++ ....+.+|++++.++.||.+.|++. .+.|+++|+++|+|+|+.++.-
T Consensus 203 g~~~~~v~~d~-~~-~d~~~L~~~i~~~~~--~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~ 278 (475)
T 3k40_A 203 GVKLRSVQSEN-HR-MRGAALEKAIEQDVA--EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAF 278 (475)
T ss_dssp TCEEEEECCBT-TB-CCHHHHHHHHHHHHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGG
T ss_pred CCceEEEECCC-CC-cCHHHHHHHHHHHHH--CCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHH
Confidence 99999999986 57 999999999976432 1223678999999999999999985 5678999999999999877530
Q ss_pred C---ccCCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 345 M---DSLGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 345 m---ipLDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
. ..-.+.. -.+|++++++|||++. |.|+|+|++|+..
T Consensus 279 ~~~~~~~~~~gi~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~~ 319 (475)
T 3k40_A 279 ICPEYRHLMKGIESADSFNFNPHKWMLV-NFDCSAMWLKDPS 319 (475)
T ss_dssp GSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESSGG
T ss_pred hCHhhHHHhcCcccCCEEEECchhccCC-CCceEEEEEeCHH
Confidence 0 0001111 1469999999999988 9999999999863
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-17 Score=180.84 Aligned_cols=229 Identities=11% Similarity=-0.007 Sum_probs=152.5
Q ss_pred hHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhc
Q 002866 135 KIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHL 210 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lL 210 (872)
.++.+++.-.|.... ..||+|-.+++.+..++..+.. .++..+ ...| ..|....+.+++++.+++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~n~~---~~~~~~~~~~~~le~~~~~~la~l~ 126 (486)
T 1js3_A 56 ILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC------GAIGCI---GFSWAASPACTELETVMMDWLGKML 126 (486)
T ss_dssp HHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH------HHHCCC---CSSGGGCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHH------HHhCcC---ccccccChhHHHHHHHHHHHHHHHh
Confidence 345555533344432 3577777666655544332111 111111 1112 12333467778999999999
Q ss_pred CCCCC-------CCcEEEeCCHHHHHHHHHhhCC--CCC------CC--------e-EEEecccCchhHHHHHHHHHHcC
Q 002866 211 NIPEN-------EYGLVFTVSRGSAFKLLAESYP--FHT------NK--------K-LLTMFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 211 gA~~d-------EY~VVFTsnATeALnLVaeslp--f~~------Gd--------~-ILT~~DhEHnSVl~~~~~AkrkG 266 (872)
|++.+ ...++||+|+|+|+.+...+.. +.+ |+ + ++...+..|.++. +.++..|
T Consensus 127 g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~---~~~~~~G 203 (486)
T 1js3_A 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE---RAGLIGG 203 (486)
T ss_dssp TCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH---HHHHHHT
T ss_pred CCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH---HHHHhCC
Confidence 99752 1258999999999887664431 101 32 4 2333345666654 4456679
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCC
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDM 345 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~m 345 (872)
++++.+|++. ++.++.++|+++|...++ ......+|++++.+|.||++.|++. .+.|+++|+++|+|+|+.++.
T Consensus 204 ~~v~~v~~d~-~~~~d~~~L~~~i~~~~~--~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~-- 278 (486)
T 1js3_A 204 VKLKAIPSDG-KFAMRASALQEALERDKA--AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSA-- 278 (486)
T ss_dssp CEEEEECCCT-TSCCCHHHHHHHHHHHHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGG--
T ss_pred CceEEeecCC-CCCCCHHHHHHHHHHHHh--CCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHH--
Confidence 9999999975 689999999999976421 1111249999999999999999984 567899999999999987654
Q ss_pred ccC-CCCC-----CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 346 DSL-GLSL-----FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 346 ipL-DLs~-----l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+.. ++.. .++|++++++|||++. |.|+|+|++|+.
T Consensus 279 ~~~~~~~~~~~g~~~adsi~~~~hK~~~~-p~~~G~l~~~~~ 319 (486)
T 1js3_A 279 FICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRR 319 (486)
T ss_dssp GGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCH
T ss_pred HHCHHHHHHhcCccccCeeEEchhhhcCC-CcceEEEEEeCH
Confidence 222 2221 2689999999999998 899999999875
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=183.15 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=137.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
..-.||.++++..+.+.+++. +..+......|+. ......+++|++|++++|++ ..+++.++|+|+
T Consensus 28 ~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~r-~~~~~~~~l~~~la~~~g~~----~~i~~~sG~~a~ 93 (398)
T 1gc0_A 28 LVPPVYQTATFTFPTVEYGAA---------CFAGEQAGHFYSR-ISNPTLNLLEARMASLEGGE----AGLALASGMGAI 93 (398)
T ss_dssp SSCCBCCCSCBCCC-------------------------------CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHH
T ss_pred cCCCccCCCccccCCHHHHHH---------hhcCCcCCCcccC-CCChHHHHHHHHHHHHhCCC----cEEEECCHHHHH
Confidence 567899999987665554321 0011000001111 01246789999999999985 255566668999
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
++++.++ +++|++|++... .|.++. .+...++..|+++..++.+ +.++|+++|.. ++++|.++
T Consensus 94 ~~~l~~~-~~~gd~vl~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~i~~--------~~~~v~~~ 157 (398)
T 1gc0_A 94 TSTLWTL-LRPGDEVLLGNT-LYGCTFAFLHHGIGEFGVKLRHVDMA------DLQALEAAMTP--------ATRVIYFE 157 (398)
T ss_dssp HHHHHHH-CCTTCEEEEESS-CCSHHHHHHHHTGGGGTCEEEEECTT------CHHHHHHHCCT--------TEEEEEEE
T ss_pred HHHHHHH-hcCCCEEEEeCC-CchhHHHHHHHHHHHcCCEEEEECCC------CHHHHHHhcCC--------CCeEEEEE
Confidence 9999887 578999887643 444454 3434446789999988753 57888877742 58999999
Q ss_pred CccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCc
Q 002866 309 VQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVM 383 (872)
Q Consensus 309 ~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i 383 (872)
..+|.||.++|++. .+.|+++|+++++|.++..+. ....+ .+++|+++.|+||+||+ |.+ .|+++++++.+
T Consensus 158 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~-~~~~d~~~~S~sK~~~~-~~~~~~G~l~~~~~~~ 231 (398)
T 1gc0_A 158 SPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY--LQRPL-ELGADLVVHSATKYLSG-HGDITAGIVVGSQALV 231 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHH--HCCGG-GGTCSEEEEETTTTTTC-SSSCCCEEEEECHHHH
T ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCceEEEECCccccCC-CCCCeEEEEEEChHHH
Confidence 99999999999985 567899999999999998765 22233 36899999999999997 665 58888876543
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=177.35 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=157.4
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.++|||+++.++.++.+++++.+ .+. .|.. .......+++++.+++++|++++ .|+||+|+|+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~-----------~~~---~~~~~~g~~~~~~~~~~~l~~~~g~~~~--~v~~~~g~t~ 77 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMAR-----------DNM---TQHAGYGQDSHCAKAARLIGELLERPDA--DVHFISGGTQ 77 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHH-----------HTT---CCCCSTTCSHHHHHHHHHHHHHHTCTTS--EEEEESCHHH
T ss_pred eeEEecCCCcCCCCHHHHHHHHH-----------HHh---hccccccccHHHHHHHHHHHHHhCCCCc--cEEEeCCchH
Confidence 38999999999989988887532 111 1211 12236788999999999998765 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
|+.+++..+ .++|++|++.. ..|.++... ..++..|+++..+|.+ ++.++.++|+++|..... ....++++|.+
T Consensus 78 a~~~~~~~~-~~~gd~vl~~~-~~~~~~~~~-~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~-~~~~~~~~v~~ 151 (359)
T 1svv_A 78 TNLIACSLA-LRPWEAVIATQ-LGHISTHET-GAIEATGHKVVTAPCP--DGKLRVADIESALHENRS-EHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHH-CCTTEEEEEET-TSHHHHSST-THHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCS-TTSCEEEEEEE
T ss_pred HHHHHHHHH-hCCCCEEEEcc-cchHHHHHH-HHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHh-ccCCCceEEEE
Confidence 999999987 46888887763 344444321 1246679999999986 567899999999875210 11234889999
Q ss_pred eCccCcccchhc---HH-HHHHHHHCCcEEEeeccc---cCCCCCccCCCCC----CCCcEEEEcccccCCCCCCceEEE
Q 002866 308 PVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGS---LGPKDMDSLGLSL----FRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 308 p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ---~aG~~mipLDLs~----l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++. |.||.++| ++ +++.|+++|+++++|.++ ..|. .+++... ..+|++++|+||+ |+ |.|+|+|
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~d~~~~s~~K~-g~-~~~~g~l 226 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS--PVNDLTLADIARLTDMFYIGATKA-GG-MFGEALI 226 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTS--TTCCCCHHHHHHHCSEEEEECTTT-TC-SSCEEEE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcC--CCcchhhhhhhhcCCEEEEecccC-CC-CCceEEE
Confidence 998 67999999 55 456789999999999998 5554 3455443 3689999999998 55 8899999
Q ss_pred EEeCCCccccc
Q 002866 377 LIKKSVMGSLQ 387 (872)
Q Consensus 377 yVRk~~i~~L~ 387 (872)
+++++.++.+.
T Consensus 227 ~~~~~~~~~~~ 237 (359)
T 1svv_A 227 ILNDALKPNAR 237 (359)
T ss_dssp ECSGGGCTTHH
T ss_pred EEcccHHHHHH
Confidence 99888766554
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=176.56 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++++|+++|+++|++ .++||+|+|+|+++++.++.+++|++|++.. ..|.++.. .++..|++++.++++.
T Consensus 36 ~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~-~~~~~~~~---~~~~~g~~~~~~~~~~ 107 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPS-NTFIATAL---AVSYTGAKPIFVEPDI 107 (373)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEET-TSCTHHHH---HHHHHSCEEEEECEET
T ss_pred chHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECC-CCcHHHHH---HHHHcCCEEEEEeccc
Confidence 46789999999999985 4999999999999999998778999988763 34555543 3456799999999985
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR- 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~- 354 (872)
.++.++.++|+++|.. ++++|. .+|+||.+.|++. .+.|+++|+++++|++|+.|. .++....+
T Consensus 108 ~~~~~d~~~l~~~l~~--------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~~ 173 (373)
T 3frk_A 108 RTYNIDPSLIESAITE--------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGS---LYKGMKVGS 173 (373)
T ss_dssp TTTEECGGGTGGGCCT--------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTC---EETTEETTS
T ss_pred cccCcCHHHHHHhcCC--------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCC---EECCEeccc
Confidence 5678899988877642 577777 5789999999985 567899999999999999885 35666666
Q ss_pred -CcEEEEccc--ccCCCCCCce-EEEEEeC
Q 002866 355 -PDFIITSFY--RVFGFDPTGF-GCLLIKK 380 (872)
Q Consensus 355 -~DFlv~S~H--K~fG~~PtGv-G~LyVRk 380 (872)
+|++++|++ |++| |.|. |+++.++
T Consensus 174 ~~d~~~~S~~~~K~l~--~~g~gg~~~~~~ 201 (373)
T 3frk_A 174 LGDAAGFSFYPAKNLG--SLGDGGAVVTND 201 (373)
T ss_dssp SSSEEEEECCTTSSSC--CSSSCEEEEESC
T ss_pred cccEEEEeCcCCCccC--ccceeEEEEeCC
Confidence 899999955 9998 4344 4444443
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=168.47 Aligned_cols=207 Identities=11% Similarity=0.078 Sum_probs=146.8
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC-CCCCCcEEEeCCHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI-PENEYGLVFTVSRG 226 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA-~~dEY~VVFTsnAT 226 (872)
.+++|+.+.... .|+.+++++.+ .+... ....|+++. ..+.|++||+++|+ +++ .|+||+|+|
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~--~~~~y~~~~----~~~l~~~la~~~g~~~~~--~i~~~~g~t 95 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAA-------RLGEV--ALNRYPVPS----SEALRAKLKEVMQVPAGM--EVLLGNGSD 95 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHH-------HHHHH--HTTCSCCCC----HHHHHHHHHHHHTCCTTC--EEEEEEHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHH-------Hhhhh--hhhcCCCCc----HHHHHHHHHHHhCCCCcc--eEEEcCCHH
Confidence 478998877543 56778777533 12211 112344432 46899999999999 444 699999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+|+++++.++ +++|++|++... .|... ...++..|+++..+|++. ++.++.++|+++|... ++++|.
T Consensus 96 ~a~~~~~~~~-~~~gd~Vl~~~~-~~~~~---~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-------~~~~v~ 162 (367)
T 3euc_A 96 EIISMLALAA-ARPGAKVMAPVP-GFVMY---AMSAQFAGLEFVGVPLRA-DFTLDRGAMLAAMAEH-------QPAIVY 162 (367)
T ss_dssp HHHHHHHHHT-CCTTCEEEEEES-CSCCS---CHHHHTTTCEEEEEECCT-TSCCCHHHHHHHHHHH-------CCSEEE
T ss_pred HHHHHHHHHH-cCCCCEEEEcCC-CHHHH---HHHHHHcCCeEEEecCCC-CCCCCHHHHHHHhhcc-------CCCEEE
Confidence 9999999988 678999876532 22222 234566899999999986 5678999999999752 478999
Q ss_pred EeCccCcccchhcHHH----HHHHHHC--CcEEEeeccccC--CCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 307 FPVQSRVTGAKYSYQW----MALAQQN--HWHVLLDAGSLG--PKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~----I~~Are~--G~~VLVDAAQ~a--G~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+++.+|.||+++|.+. ++.|+++ |+++++|.++.. +.. ..-.+...+.++++.|++|+ +.+..++|++++
T Consensus 163 ~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~ 240 (367)
T 3euc_A 163 LAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAG 240 (367)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEE
T ss_pred EcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhh-cccccCceeeee
Confidence 9999999999998753 3456889 999999999652 111 11133445677999999999 632334788887
Q ss_pred eCCCccc
Q 002866 379 KKSVMGS 385 (872)
Q Consensus 379 Rk~~i~~ 385 (872)
+++.++.
T Consensus 241 ~~~~~~~ 247 (367)
T 3euc_A 241 DPQWLEQ 247 (367)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6554433
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-17 Score=180.20 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCC----CCC---CeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPF----HTN---KKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf----~~G---d~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++..++++.+++++|++.+...++||+|+|+|+.+++.++.. ++| ++|++.. ..|.++ ...++..|++
T Consensus 106 ~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~-~~h~~~---~~~~~~~G~~ 181 (497)
T 3mc6_A 106 RKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPV-TAHAGF---DKAAYYFGMK 181 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEET-TSCHHH---HHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeC-CccHHH---HHHHHHcCCe
Confidence 4677789999999999983233699999999999998877521 023 6777663 345654 3445667999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC----
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK---- 343 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~---- 343 (872)
++.+|++..++.++.++|+++|.. ++++|++++.+|.||.+.|++. .+.|+++|+++++|+++.++.
T Consensus 182 ~~~v~~~~~~~~~d~~~l~~~i~~--------~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~ 253 (497)
T 3mc6_A 182 LRHVELDPTTYQVDLGKVKKFINK--------NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFM 253 (497)
T ss_dssp EEEECBCTTTCSBCTTTTGGGCCS--------SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGG
T ss_pred EEEEecCcccCcCCHHHHHHHHhh--------CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhh
Confidence 999999864678899999877742 5899999999999999999984 567899999999999986321
Q ss_pred -----CCc-cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 344 -----DMD-SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 344 -----~mi-pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
..+ +++....++|++++|+||++++ |.|+|++++++..+
T Consensus 254 ~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~ 298 (497)
T 3mc6_A 254 EKAGYKNLPLLDFRVPGVTSISCDTHKYGFA-PKGSSVIMYRNSDL 298 (497)
T ss_dssp TTTTCCSCCCCSTTSTTCCEEEEETTTTTCC-CSSCEEEECSSHHH
T ss_pred hhhcccCCccccccCCCCcEEEECchhhcCC-CCCceeEEecCHHH
Confidence 112 4677778899999999999766 88999999887643
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=174.23 Aligned_cols=212 Identities=13% Similarity=0.038 Sum_probs=139.4
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhcc----CcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSN----HALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~----~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
..++|+++.+++|+.+++++.+. +...... ...| +++....+.+.+|+.+++++|++++ ++|+.+
T Consensus 24 ~~~~~~~~~~~~~~~v~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~---~i~~~s 93 (405)
T 2vi8_A 24 AKIELIASENFVSRAVMEAQGSV-------LTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA---NVQPHS 93 (405)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSG-------GGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSS
T ss_pred cceeeccCcccCCHHHHHHHHHH-------hhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce---EEEecC
Confidence 35788888899999999886431 1100000 0001 2233334555699999999999743 555445
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHH-HHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQ-SAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~-~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+|+.+++.++ +++|++|++.. ..|.+... +.. .....++++..++++..++.++.++|+++|... ++
T Consensus 94 Gt~a~~~a~~~~-~~~gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-------~~ 164 (405)
T 2vi8_A 94 GAQANMAVYFTV-LEHGDTVLGMN-LSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH-------RP 164 (405)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEC-GGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-------CC
T ss_pred cHHHHHHHHHHh-cCCCCEEEEec-ccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc-------CC
Confidence 599999999988 67899987663 23444421 110 011123477777765335678999999988642 36
Q ss_pred eEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC---CCcEEEEcccccCCCCCCceEEEEE
Q 002866 303 GLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF---RPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l---~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
++|.++. +..|...|++. .+.|+++|+++++|++|..|. ...+.... .+|++++|+||+||+ |.| |++++
T Consensus 165 ~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~di~~~s~sK~~~g-~~g-G~~~~ 238 (405)
T 2vi8_A 165 KLIVAAA--AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGL--VAAGLHPNPVPYAHFVTTTTHKTLRG-PRG-GMILC 238 (405)
T ss_dssp SEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTSSCCSTTTCSEEEEESSSTTCC-CSC-EEEEE
T ss_pred eEEEEeC--CCCCccCCHHHHHHHHHHcCCEEEEEccccccc--cccCcCCCccccCCEEEEeccccCCC-CCC-eEEEE
Confidence 7777732 33578888974 567899999999999987542 12222222 689999999999987 789 99998
Q ss_pred eCCCcccc
Q 002866 379 KKSVMGSL 386 (872)
Q Consensus 379 Rk~~i~~L 386 (872)
++++++.+
T Consensus 239 ~~~~~~~l 246 (405)
T 2vi8_A 239 QEQFAKQI 246 (405)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 86654433
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=176.23 Aligned_cols=174 Identities=11% Similarity=0.030 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHhcCCCC--CCCcEEEeCCHHHHHHHHHhhCCCCCC--------CeEEEecccCchhHHHHHHHHHH
Q 002866 195 KGTVEHDIKTRIMDHLNIPE--NEYGLVFTVSRGSAFKLLAESYPFHTN--------KKLLTMFDYESQSVNWMAQSAKE 264 (872)
Q Consensus 195 S~~~ieeARerIA~lLgA~~--dEY~VVFTsnATeALnLVaeslpf~~G--------d~ILT~~DhEHnSVl~~~~~Akr 264 (872)
......++++.+++++|+++ +....+||+|+|+|+.+++..+. .+| ++|++.. ..|.++ ...++.
T Consensus 137 ~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~-~~~~~~---~~~~~~ 211 (514)
T 3mad_A 137 TAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPV-SAHAAF---DKAAQY 211 (514)
T ss_dssp HHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEET-TSCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeC-ccchHH---HHHHHH
Confidence 34666788899999999974 33223999999999999888763 222 7777663 345544 344566
Q ss_pred cCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCC-
Q 002866 265 KGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGP- 342 (872)
Q Consensus 265 kGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG- 342 (872)
.|++++.+|++. ++.++.++|+++|.. ++++|++++.+|.||.+.|++. .+.|+++|+++++|+++..+
T Consensus 212 ~G~~v~~v~~~~-~~~~d~~~Le~~i~~--------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~ 282 (514)
T 3mad_A 212 FGIKLVRTPLDA-DYRADVAAMREAITP--------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFI 282 (514)
T ss_dssp HTCEEEEECBCT-TSCBCHHHHHHHCCT--------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cCCeeEEeeeCC-CCCCCHHHHHHHhcc--------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccccc
Confidence 799999999987 688999999988853 5899999999999999999984 56789999999999996532
Q ss_pred --------CCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 343 --------KDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 343 --------~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
....+++....++|++++|+||++++ |.|+|++++++..+
T Consensus 283 ~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~ 330 (514)
T 3mad_A 283 LPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYG-AKGTSVILYRRPDL 330 (514)
T ss_dssp HHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCC-CSSCEEEEESSHHH
T ss_pred chhHHhcCCCCCcccccCCCCcEEEECchhccCC-CCCeEEEEEeCHHH
Confidence 21125677778999999999999666 88999999988654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-16 Score=172.68 Aligned_cols=182 Identities=12% Similarity=0.002 Sum_probs=132.3
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCC--------CcEEEeCCHHHHHHHHHhhCC-----------C-------CCCCeEEE
Q 002866 193 AEKGTVEHDIKTRIMDHLNIPENE--------YGLVFTVSRGSAFKLLAESYP-----------F-------HTNKKLLT 246 (872)
Q Consensus 193 psS~~~ieeARerIA~lLgA~~dE--------Y~VVFTsnATeALnLVaeslp-----------f-------~~Gd~ILT 246 (872)
|...++..++.+.+++++|.+... -..+||+|+|+|+.+...... + .++..|++
T Consensus 114 p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (481)
T 4e1o_A 114 PACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYA 193 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEE
Confidence 444567778888899999997532 157999999999765443321 0 12345555
Q ss_pred ecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHH
Q 002866 247 MFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MAL 325 (872)
Q Consensus 247 ~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~ 325 (872)
+ +..|.++... ++-.|++++.+|+++ ++.+++++|+++|...+. ....+.+|++++.++.||.+.|++. .+.
T Consensus 194 s-~~~H~s~~~~---~~~~g~~~~~v~~~~-~~~~d~~~Le~~i~~~~~--~g~~~~~vv~~~~~t~~G~id~l~~I~~l 266 (481)
T 4e1o_A 194 S-DQAHSSVEKA---GLISLVKMKFLPVDD-NFSLRGEALQKAIEEDKQ--RGLVPVFVCATLGTTGVCAFDCLSELGPI 266 (481)
T ss_dssp E-TTSCHHHHHH---HHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred c-CcchHHHHHH---HHhCCCceEEEEcCC-CCcCCHHHHHHHHHHHHh--CCCCcEEEEEecCCCCCcCcCCHHHHHHH
Confidence 5 5567776543 344699999999975 689999999999975422 1223678999999999999999985 567
Q ss_pred HHHCCcEEEeeccccCCCCCc-cCC--CCC-CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 326 AQQNHWHVLLDAGSLGPKDMD-SLG--LSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 326 Are~G~~VLVDAAQ~aG~~mi-pLD--Ls~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
|+++|+++|||||+.++.-.. ... +.. -.+|++++++|||++. |.|+|+|++++..
T Consensus 267 a~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~-p~g~g~l~~~~~~ 326 (481)
T 4e1o_A 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMV-HFDCTGFWVKDKY 326 (481)
T ss_dssp HHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESBHH
T ss_pred HHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCC-CCceEEEEEeCHH
Confidence 899999999999987652000 010 111 1359999999999998 9999999998863
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-17 Score=173.67 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=140.1
Q ss_pred CCCchhHHHHHhhcccCCC-------C---ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhcc-C---cCcCCCc
Q 002866 130 YQSSDKIDQLRANEYLHLS-------P---KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSN-H---ALYGGAE 194 (872)
Q Consensus 130 y~~t~~ID~lR~~EFP~L~-------~---~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~-~---~~ygNps 194 (872)
|..-.++..+|+ +||.+. + ..|++++..+. .++.+++++.+ .+.....+ + ..|+
T Consensus 20 ~~~~~~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~-------~~~~~~~~~~~~~~~~~--- 88 (401)
T 2bwn_A 20 YRTFIDIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHE-------ALEAVGAGSGGTRNISG--- 88 (401)
T ss_dssp CCCCCEEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHH-------HHHHHCSCCCSBTTTBC---
T ss_pred ceehhhhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHH-------HHHHcCCCCCCcCcccC---
Confidence 443334556675 699874 1 34776655442 34567777543 12111000 0 0111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 195 KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 195 S~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
......++|++||+++|++ + .|+||+|++ ++..+...+ .+.+|+.|++.. ..|.++.. .++..|++++.+|
T Consensus 89 ~~~~~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~-~~~~~~~~---~~~~~g~~~~~v~ 160 (401)
T 2bwn_A 89 TTAYHRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDATLSTLRVLFPGLIIYSDS-LNHASMIE---GIKRNAGPKRIFR 160 (401)
T ss_dssp CBHHHHHHHHHHHHHTTCS-E--EEEESCHHH-HHHHHHHHHHHHSTTCEEEEET-TCCHHHHH---HHHHSCCCEEEEC
T ss_pred ChHHHHHHHHHHHHHhCCC-c--EEEECCcHH-HHHHHHHHHhcCCCCCEEEECc-hhhHHHHH---HHHHcCCeEEEEc
Confidence 1256789999999999973 2 589988877 544443333 235788887663 35665543 2355799999888
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC--CC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL--GL 350 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL--DL 350 (872)
.+ +.++|++++... ..+++++|++++.+|.||.++|++ +++.|+++|+++++|++|..|.- -+- .+
T Consensus 161 ~~------d~~~le~~l~~~----~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-~~~g~~~ 229 (401)
T 2bwn_A 161 HN------DVAHLRELIAAD----DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY-GPRGAGV 229 (401)
T ss_dssp TT------CHHHHHHHHHHS----CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-STTSCCH
T ss_pred CC------CHHHHHHHHHhh----ccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccccc-CCCCcee
Confidence 64 578898888642 113689999999999999999997 55788999999999999985420 010 00
Q ss_pred ---CC--CCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 351 ---SL--FRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 351 ---s~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
.. -++|.++.|+.|.||. .| |+++.++
T Consensus 230 ~~~~~~~~~~~i~~~s~sK~~~~--~G-G~~~~~~ 261 (401)
T 2bwn_A 230 AERDGLMHRIDIFNGTLAKAYGV--FG-GYIAASA 261 (401)
T ss_dssp HHHHTCGGGCSEEEEESSSTTCS--CC-EEEEECH
T ss_pred eeccCccccCcEEEeechhhccC--CC-CEEecCH
Confidence 11 1468999999999994 35 6665543
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=166.50 Aligned_cols=228 Identities=13% Similarity=0.155 Sum_probs=161.4
Q ss_pred hhCCCCCCchhHHHHHhhcccCCCCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHH
Q 002866 125 TMYPKYQSSDKIDQLRANEYLHLSPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIK 203 (872)
Q Consensus 125 ~~~p~y~~t~~ID~lR~~EFP~L~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeAR 203 (872)
...+.|.....+..+++ .|.. +.+++|+.+.... .|+.+++++.+ .+.....|.++.. .+.|
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~-----------~~~~~~~y~~~~~----~~lr 71 (365)
T 3get_A 9 NNLSNYEPGKDIEVIAK-EYGV-KEVIKLASNENPFGTPPKAIECLRQ-----------NANKAHLYPDDSM----IELK 71 (365)
T ss_dssp GGSCCCCCCCCHHHHHH-HTTC-SCCEECSSCCCTTCSCHHHHHHHHH-----------HGGGTTSCCCTTC----HHHH
T ss_pred hhcCCCCCCCCHHHHHH-hcCC-CceEEecCCCCCCCCCHHHHHHHHH-----------HHHhhccCCCCCh----HHHH
Confidence 34445555556777765 4655 5689999875553 66778776532 1111123433321 5899
Q ss_pred HHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCH
Q 002866 204 TRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCS 283 (872)
Q Consensus 204 erIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~ 283 (872)
++||+++|++++ .|+||+|+|+|+++++.++ +++|++|++.. ..|. .+...++..|+++..+|++..++ ++.
T Consensus 72 ~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~-~~~~---~~~~~~~~~g~~~~~v~~~~~~~-~d~ 143 (365)
T 3get_A 72 STLAQKYKVQNE--NIIIGAGSDQVIEFAIHSK-LNSKNAFLQAG-VTFA---MYEIYAKQCGAKCYKTQSITHNL-DEF 143 (365)
T ss_dssp HHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECS-SCCT---HHHHHHHHHTCEEEECSSSSCCH-HHH
T ss_pred HHHHHHhCCCcc--eEEECCCHHHHHHHHHHHH-hCCCCEEEEeC-CChH---HHHHHHHHcCCEEEEEecCCCCC-CCH
Confidence 999999999776 5999999999999999987 57899988763 2333 33445667899999998822356 888
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHH--HCCcEEEeecccc------CCCCCccCCC----
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQ--QNHWHVLLDAGSL------GPKDMDSLGL---- 350 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Ar--e~G~~VLVDAAQ~------aG~~mipLDL---- 350 (872)
++|++++. +++++|.+++.+|.||.++|++.+ +.++ ++|+++++|.++. .+. .+.+.
T Consensus 144 ~~l~~~l~--------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~ 213 (365)
T 3get_A 144 KKLYETHK--------DEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSK--KHLEPCELI 213 (365)
T ss_dssp HHHHHHTT--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGG--GCCCHHHHH
T ss_pred HHHHHHhC--------CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCc--ccccHhHHh
Confidence 88888775 258999999999999999999854 3445 5799999999987 332 12222
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
...+.++++.|++|+||.+..++|+++++++.++.+.
T Consensus 214 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 250 (365)
T 3get_A 214 KEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFY 250 (365)
T ss_dssp HHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHH
T ss_pred ccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHH
Confidence 1246789999999999832345899998777666554
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-17 Score=170.14 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=129.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCC
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
+.|++||+++|++ + .|+|++| |+|+++++.++ +++|++|++.. ..|.+.. .+...++..|+++..++.
T Consensus 2 ~l~~~la~~~g~~-~--~i~~~sG-~~a~~~~~~~~-~~~g~~v~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A--CAATASG-MGAIAASVWTF-LKAGDHLISDD-CLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEES-CCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC-e--EEEeCCh-HHHHHHHHHHh-cCCCCEEEEcC-CCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 5789999999986 2 4655555 89999999887 57899987763 3455554 344445678999998875
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHH-CCcEEEeeccccCCCCCccCCCCCCCCcE
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQ-NHWHVLLDAGSLGPKDMDSLGLSLFRPDF 357 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are-~G~~VLVDAAQ~aG~~mipLDLs~l~~DF 357 (872)
.+.++++++|. +++++|.+++.+|.||.++|++. .+.|++ +|+++++|++|..|. ...++ ..++|+
T Consensus 71 -~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~--~~~~~-~~~~d~ 138 (331)
T 1pff_A 71 -AVPGNIEKHLK--------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI--LTNPL-DLGVDI 138 (331)
T ss_dssp -TSTTHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH--HCCGG-GGTCSE
T ss_pred -CCHHHHHHhhc--------CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccc--cCChh-hcCCcE
Confidence 25677776664 35899999999999999999985 567899 999999999998775 23334 468999
Q ss_pred EEEcccccCCCCCCc--eEEEEEeC-CCcccccCCC
Q 002866 358 IITSFYRVFGFDPTG--FGCLLIKK-SVMGSLQNQS 390 (872)
Q Consensus 358 lv~S~HK~fG~~PtG--vG~LyVRk-~~i~~L~P~~ 390 (872)
+++|+||+||+ |.| .|++++++ +.++.+.+..
T Consensus 139 ~~~s~~K~~~~-~~~r~~G~~~~~~~~~~~~l~~~~ 173 (331)
T 1pff_A 139 VVHSATKYING-HTDVVAGLVCSRADIIAKVKSQGI 173 (331)
T ss_dssp EEEETTTTTSS-SSSCCCEEEEECHHHHHHHHHTCC
T ss_pred EEEECccccCC-CCCceEEEEEeCcHHHHHHHHHHH
Confidence 99999999997 777 89999998 8777777643
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-16 Score=175.38 Aligned_cols=214 Identities=14% Similarity=0.037 Sum_probs=150.3
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.-||.|-.+++.+...+..+.. ..+..+. ..| .+|....+.+++++.+++++|.+.+...++||+|+|+|
T Consensus 96 p~f~~~~~~~~~~~~~~~e~l~------~~~~~~~---~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a 166 (511)
T 3vp6_A 96 PRFFNQLSTGLDIIGLAGEWLT------STANTNM---FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAIS 166 (511)
T ss_dssp TTEESSSSCCCCHHHHHHHHHH------HHHCCCS---SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHH
T ss_pred CCceEeecCCCcHHHHHHHHHH------HHhccCC---CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHH
Confidence 4588887666655544432110 1111111 112 23444567788999999999998543469999999999
Q ss_pred HHHHHhhCC-------------CCCCCeEEEecccCchhHHHHHHHHHHcCc---EEEEEeccCCCCccCHHHHHHHHhh
Q 002866 229 FKLLAESYP-------------FHTNKKLLTMFDYESQSVNWMAQSAKEKGA---KVYSAWFKWPTLKLCSTDLRKQISS 292 (872)
Q Consensus 229 LnLVaeslp-------------f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa---eV~~Vpvd~p~g~Id~edLe~~I~~ 292 (872)
+.++..... ..+++.|+++ +..|.++.. .++..|+ +++.+|++. ++.++.++|+++|..
T Consensus 167 ~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s-~~~H~s~~~---~~~~~g~g~~~~~~v~~d~-~~~~d~~~Le~~i~~ 241 (511)
T 3vp6_A 167 NMYSIMAARYKYFPEVKTKGMAAVPKLVLFTS-EQSHYSIKK---AGAALGFGTDNVILIKCNE-RGKIIPADFEAKILE 241 (511)
T ss_dssp HHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEE-TTSCTHHHH---HHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhcCcccCCCeEEEEC-CCchHHHHH---HHHHcCCCCCcEEEeecCC-CCccCHHHHHHHHHH
Confidence 876544321 1134456655 446776643 3455676 899999986 689999999999975
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCc-----cCCCC-CCCCcEEEEccccc
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMD-----SLGLS-LFRPDFIITSFYRV 365 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mi-----pLDLs-~l~~DFlv~S~HK~ 365 (872)
.+. ....+++|++++.+|.+|.+.|++. ...|+++|+++|||+|+.++. + +..+. ..++|++++++|||
T Consensus 242 ~~~--~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~--~~~~~~~~~~~g~~~aDsv~~~~hK~ 317 (511)
T 3vp6_A 242 AKQ--KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL--LMSRKHRHKLNGIERANSVTWNPHKM 317 (511)
T ss_dssp HHH--TTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTTGGGCSEEEECTTST
T ss_pred HHh--cCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhH--hhChhhhhhccCCccCCEEEECcccc
Confidence 421 2234889999999999999999985 567899999999999988764 2 11222 13679999999999
Q ss_pred CCCCCCceEEEEEeCCC
Q 002866 366 FGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 366 fG~~PtGvG~LyVRk~~ 382 (872)
|+. |.|+|++++++..
T Consensus 318 l~~-p~g~g~l~~~~~~ 333 (511)
T 3vp6_A 318 MGV-LLQCSAILVKEKG 333 (511)
T ss_dssp TCC-CSCCEEEEESSTT
T ss_pred cCC-CcCeEEEEEeCHH
Confidence 998 8999999998864
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-16 Score=160.19 Aligned_cols=204 Identities=16% Similarity=0.221 Sum_probs=148.5
Q ss_pred CCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 148 SPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 148 ~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
+..|+|+.+... ++|+.+++++.+ . +.....|.+ ....+.|++||+++|++++ .|+||+|+|
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~--------~---~~~~~~y~~----~~~~~lr~~la~~~~~~~~--~i~~t~G~~ 78 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAA--------A---AARINRYPF----DAEPRVMRKLAEHFSCPED--NLMLVRGID 78 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHH--------H---GGGTTSCCT----THHHHHHHHHHHHHTSCGG--GEEEESHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHH--------h---hhhhccCCC----CchHHHHHHHHHHhCcCHH--HEEEeCCHH
Confidence 348999998654 356777776432 1 111123432 2467899999999999876 599999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
+++++++..+ +|++|++.. ..|. .+...++..|+++..+|+++ ++.++.++|+++ .++++++
T Consensus 79 ~~l~~~~~~~---~gd~vl~~~-p~~~---~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~----------~~~~~v~ 140 (337)
T 3p1t_A 79 ECFDRISAEF---SSMRFVTAW-PGFD---GYRARIAVSGLRHFEIGLTD-DLLLDPNDLAQV----------SRDDCVV 140 (337)
T ss_dssp HHHHHHHHHS---TTSEEEEES-SSCS---HHHHHHTTSCCEEEEECBCT-TSSBCHHHHTTC----------CTTEEEE
T ss_pred HHHHHHHHhc---CCCeEEEeC-CCcH---HHHHHHHHcCCEEEEecCCC-CCCCCHHHHHhh----------cCCCEEE
Confidence 9999999997 789987653 2233 33455677899999999876 467888877542 2478999
Q ss_pred EeCccCcccchhcHHH-HHHHHHCCcEEEeecccc--CCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 307 FPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSL--GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~--aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
+++.+|.||.++|++. .+.++++++ +++|.++. .+. .+..+...+.++++.|++|+||.+..++|+++++++.+
T Consensus 141 i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~--~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~ 217 (337)
T 3p1t_A 141 LANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF--RARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELI 217 (337)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC--SSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc--cccccccCCCEEEEeeCchhccCcchheEEEEeCHHHH
Confidence 9999999999999985 456788887 56699865 332 23334445678999999999983234579999888887
Q ss_pred ccccCC
Q 002866 384 GSLQNQ 389 (872)
Q Consensus 384 ~~L~P~ 389 (872)
+.+...
T Consensus 218 ~~l~~~ 223 (337)
T 3p1t_A 218 AAMKRK 223 (337)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777653
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=160.56 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=140.4
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHH
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFK 230 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALn 230 (872)
|+|+ .+++|+.+++++.+ .+.. .+.+|. ....++|++||+++|++ .|+||+|+|+|+.
T Consensus 4 i~~~---~~~~~~~v~~a~~~-----------~~~~--~~~~~~--~~~~~l~~~la~~~~~~----~v~~~~ggt~al~ 61 (375)
T 2fnu_A 4 FAYS---EPCLDKEDKKAVLE-----------VLNS--KQLTQG--KRSLLFEEALCEFLGVK----HALVFNSATSALL 61 (375)
T ss_dssp EESC---CCCCCHHHHHHHHH-----------HHTS--SCCSSS--HHHHHHHHHHHHHHTCS----EEEEESCHHHHHH
T ss_pred cccC---CCCCCHHHHHHHHH-----------HHHc--CcccCC--hHHHHHHHHHHHHhCCC----eEEEeCCHHHHHH
Confidence 5553 56788888887532 1211 223443 46789999999999986 4999999999999
Q ss_pred HHHhhCC--CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 231 LLAESYP--FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 231 LVaeslp--f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+++.++. +++|++|++.. ..|.++.. .++..|++++.++++.. +.++.++|+++|. +++++|++.
T Consensus 62 ~~~~~~~~~~~~gd~Vl~~~-~~~~~~~~---~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~--------~~~~~v~~~ 128 (375)
T 2fnu_A 62 TLYRNFSEFSADRNEIITTP-ISFVATAN---MLLESGYTPVFAGIKND-GNIDELALEKLIN--------ERTKAIVSV 128 (375)
T ss_dssp HHHHHSSCCCTTSCEEEECS-SSCTHHHH---HHHHTTCEEEECCBCTT-SSBCGGGSGGGCC--------TTEEEEEEE
T ss_pred HHHHHhcccCCCCCEEEECC-CccHhHHH---HHHHCCCEEEEeccCCC-CCCCHHHHHhhcC--------cCceEEEEe
Confidence 9999986 78899988763 34555543 34457999999998763 5788888877664 257887776
Q ss_pred CccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCC--CCCCC-CcEEEEcccccCCCCCCceEEEEEeC--CC
Q 002866 309 VQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLG--LSLFR-PDFIITSFYRVFGFDPTGFGCLLIKK--SV 382 (872)
Q Consensus 309 ~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLD--Ls~l~-~DFlv~S~HK~fG~~PtGvG~LyVRk--~~ 382 (872)
+. ||.+.|++ +++.|+++|+++++|++|..+. .+.+ +..++ ++++++|.||+|| | |+|++++++ ++
T Consensus 129 ~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~~~i~~~s~s~~K~~~--~-g~g~~~~~~~~~~ 200 (375)
T 2fnu_A 129 DY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGS--EYQNKKVGGFALASVFSFHAIKPIT--T-AEGGAVVTNDSEL 200 (375)
T ss_dssp CG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTC--EETTEETTSSSSEEEEECCTTSSSC--C-SSCEEEEESCHHH
T ss_pred CC---cCCccCHHHHHHHHHHcCCEEEEECccccCC--eECCeeccccCCeEEEeCCCCCCcc--c-cCceEEEeCCHHH
Confidence 65 99999997 4567899999999999998875 3333 33333 4555666669997 7 999999953 34
Q ss_pred ccccc
Q 002866 383 MGSLQ 387 (872)
Q Consensus 383 i~~L~ 387 (872)
++.+.
T Consensus 201 ~~~~~ 205 (375)
T 2fnu_A 201 HEKMK 205 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=163.37 Aligned_cols=208 Identities=14% Similarity=0.080 Sum_probs=149.5
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
++++|+.+...+ .|+.+.+++.+ .+.....|+.+. ...+.|++|+++++++++ .|+||+|+|+
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~-----------~~~~~~~y~~~~---~~~~l~~~la~~~~~~~~--~v~~~~g~~~ 89 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRR-----------ALGRQDQYAPPA---GLPALREALAEEFAVEPE--SVVVTSGATE 89 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHH-----------HTTTSCSCCCTT---CCHHHHHHHHHHHTSCGG--GEEEESSHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHH-----------HHHHhcCCCCCC---CCHHHHHHHHHhcCCChh--hEEEcCChHH
Confidence 367777665542 45667666432 111112344431 245899999999999876 4999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc--CCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK--WPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd--~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
|+.+++.++ +++|++|++... .|.+.. ..++..|+++..+|++ ..+..++.++|++++. +++++|
T Consensus 90 a~~~~~~~~-~~~gd~Vl~~~~-~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~--------~~~~~v 156 (381)
T 1v2d_A 90 ALYVLLQSL-VGPGDEVVVLEP-FFDVYL---PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT--------PRTRAL 156 (381)
T ss_dssp HHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC--------TTEEEE
T ss_pred HHHHHHHHh-CCCCCEEEEcCC-CchhHH---HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC--------cCCEEE
Confidence 999999887 578999876532 344443 3456789999999986 2345688898887663 258999
Q ss_pred EEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccCCC-CCccCCCC--CCCCcEEEEcccccCCCCCCc--eEEE
Q 002866 306 VFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLGPK-DMDSLGLS--LFRPDFIITSFYRVFGFDPTG--FGCL 376 (872)
Q Consensus 306 a~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~aG~-~mipLDLs--~l~~DFlv~S~HK~fG~~PtG--vG~L 376 (872)
.+++.+|.||.++|. + +++.|+++|+++++|.++.... ...+.++. ..+.|+++.|+||+|| +.| +|++
T Consensus 157 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~ 234 (381)
T 1v2d_A 157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE--ATGYRVGWI 234 (381)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT--CGGGCCEEE
T ss_pred EECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC--CcccceEEE
Confidence 999999999999984 4 3467799999999999987431 00123333 3579999999999998 458 8999
Q ss_pred EEeCCCccccc
Q 002866 377 LIKKSVMGSLQ 387 (872)
Q Consensus 377 yVRk~~i~~L~ 387 (872)
+++++.++.+.
T Consensus 235 ~~~~~~~~~~~ 245 (381)
T 1v2d_A 235 VGPKEFMPRLA 245 (381)
T ss_dssp ECCTTTHHHHH
T ss_pred EeCHHHHHHHH
Confidence 99887766553
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=150.97 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=132.2
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.++.|+.+... +.|+.+++++.+ ..... ..|.++ ...+.|++||++++++++ .|+||+|+|+
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~--------~~~~~---~~y~~~----~~~~l~~~la~~~~~~~~--~i~~~~g~t~ 89 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDE--------GIKNL---GVYPDV----NYRRLNKSIENYLKLKDI--GIVLGNGASE 89 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHH--------HHHGG---GSCCCT----TCHHHHHHHHHHHTCCSC--EEEEESSHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHH--------HHHHh---cCCCCc----cHHHHHHHHHHHhCCCcc--eEEEcCCHHH
Confidence 36777776443 356777776432 11111 233332 246899999999999876 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
|+++++..+ ++|++..- .|.. +...++..|++++.+|++. .+.++.++|++++. + ++++.+
T Consensus 90 al~~~~~~~-----d~vi~~~~-~~~~---~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~l~--------~-~~~v~i 150 (361)
T 3ftb_A 90 IIELSISLF-----EKILIIVP-SYAE---YEINAKKHGVSVVFSYLDE-NMCIDYEDIISKID--------D-VDSVII 150 (361)
T ss_dssp HHHHHHTTC-----SEEEEEES-CCTH---HHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHTT--------T-CSEEEE
T ss_pred HHHHHHHHc-----CcEEEecC-ChHH---HHHHHHHcCCeEEEeecCc-ccCCCHHHHHHhcc--------C-CCEEEE
Confidence 999999987 77776532 2332 3445667899999999986 34677888887774 2 789999
Q ss_pred eCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCC---CccCCC-CCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 308 PVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKD---MDSLGL-SLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 308 p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~---mipLDL-s~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
++.+|.||.++|.+. ++.|+++|+++++|.++..... ...+.+ ...+.++++.|++|.||.+..++|+++
T Consensus 151 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~ 228 (361)
T 3ftb_A 151 GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI 228 (361)
T ss_dssp ETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE
T ss_pred eCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEE
Confidence 999999999999753 3456799999999999763210 011111 123455788899999983122357666
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=156.96 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+..+++|+.+++++|++ .++||+|+|+|+.+++.++.+++|++|++.. ..|.++.. .++..|++++.++++.
T Consensus 42 ~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~-~~~~~~~~---~~~~~g~~~~~~~~~~ 113 (418)
T 2c81_A 42 SMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGDEVIVPS-LTWIATAT---AVLNVNALPVFVDVEA 113 (418)
T ss_dssp CHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCTHHHH---HHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECC-CccHhHHH---HHHHcCCEEEEEecCC
Confidence 45788999999999986 3788999999999999998678899988763 34555543 3456899999999976
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR- 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~- 354 (872)
.++.++.++|+++|.. ++++|.+ +|.||...|++ +++.|+++|+++++|++|+.+. . ++...++
T Consensus 114 ~~~~~d~~~l~~~i~~--------~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~-~~~~~~~~ 179 (418)
T 2c81_A 114 DTYCIDPQLIKSAITD--------KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGS--V-WNNQRAGT 179 (418)
T ss_dssp TTCSBCHHHHGGGCCT--------TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTC--E-ETTEETTS
T ss_pred CCCCcCHHHHHHhhCC--------CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccC--c-cCCEeccc
Confidence 4577899988877642 5788775 56899999997 5577899999999999998874 1 2211111
Q ss_pred -CcEEEEcc--cccCCCCCCceEEEEEe-CCCccccc
Q 002866 355 -PDFIITSF--YRVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 355 -~DFlv~S~--HK~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
.|++++|+ ||+||. + ..|+++.+ +++++.+.
T Consensus 180 ~~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~ 214 (418)
T 2c81_A 180 IGDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQ 214 (418)
T ss_dssp SSSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHH
T ss_pred ccceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHH
Confidence 35555555 999984 2 45666654 35544443
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=161.19 Aligned_cols=171 Identities=13% Similarity=0.070 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCc--EEEEEecc
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA--KVYSAWFK 275 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa--eV~~Vpvd 275 (872)
..+.+|+.+++++|++++ .+|+.++|+|+.+++..+ +++|++|++.. ..|.++......++..|+ .+..++++
T Consensus 70 ~e~~ar~~la~~~g~~~~---~i~~~sGt~a~~~~~~~~-~~~gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (407)
T 2dkj_A 70 VESLAIERAKALFGAAWA---NVQPHSGSQANMAVYMAL-MEPGDTLMGMD-LAAGGHLTHGSRVNFSGKLYKVVSYGVR 144 (407)
T ss_dssp HHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHH-CCTTCEEEEEC-GGGTCCGGGTCTTSHHHHHSEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCcc---eEEecchHHHHHHHHHHh-cCCCCEEEEec-ccccCccchHHHHHhcCceEEEEecCCC
Confidence 334588999999999743 455556677999999987 67899987663 234433210111122344 34434334
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCC--
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSL-- 352 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~-- 352 (872)
..+..++.++|+++|... ++++|.++..+| |...|++ +.+.|+++|+++++|.+|..|. ...+...
T Consensus 145 ~~~~~~d~~~l~~~l~~~-------~~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~ 213 (407)
T 2dkj_A 145 PDTELIDLEEVRRLALEH-------RPKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGL--VAAGLHPNP 213 (407)
T ss_dssp TTTSSCCHHHHHHHHHHH-------CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTCSCCC
T ss_pred cccCccCHHHHHHHHhhc-------CCeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccc--cccCccCCc
Confidence 224678999999998642 377888855555 5889997 4567899999999999987643 1122111
Q ss_pred -CCCcEEEEcccccCCCCCCceEEEEEe-CCCcccc
Q 002866 353 -FRPDFIITSFYRVFGFDPTGFGCLLIK-KSVMGSL 386 (872)
Q Consensus 353 -l~~DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L 386 (872)
-.+|++++|+||++++ |.| |+++++ +++++.+
T Consensus 214 ~~~~di~~~s~sK~l~g-~~~-G~~~~~~~~~~~~l 247 (407)
T 2dkj_A 214 LPYAHVVTSTTHKTLRG-PRG-GLILSNDPELGKRI 247 (407)
T ss_dssp TTTCSEEEEESSGGGCC-CSC-EEEEESCHHHHHHH
T ss_pred cccccEEEEeccccCCC-CCc-eEEEECCHHHHHHH
Confidence 1389999999999877 777 999988 4554433
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-15 Score=157.31 Aligned_cols=160 Identities=12% Similarity=0.040 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.|++||+++|++ .++||+|+|+|+.+++.++.+++|++|++.. ..|.++. ..++..|++++.++++.
T Consensus 56 ~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~-~~~~~~~---~~~~~~g~~~~~~~~~~ 127 (391)
T 3dr4_A 56 RFIVEFEKAFADYCGVK----HAIACNNGTTALHLALVAMGIGPGDEVIVPS-LTYIASA---NSVTYCGATPVLVDNDP 127 (391)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHTCCTTCEEEEES-SSCTHHH---HHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECC-CchHHHH---HHHHHCCCEEEEEecCc
Confidence 46789999999999986 4899999999999999988778899988763 3455443 33456799999999985
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCC--CCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGL--SLF 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDL--s~l 353 (872)
.++.++.++|++++.. ++++|. .+|.||.+.|++ +++.|+++|+++++|++|+.|. ...+. ..+
T Consensus 128 ~~~~~d~~~l~~~~~~--------~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~ 194 (391)
T 3dr4_A 128 RTFNLDAAKLEALITP--------RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGA--TYRGKKSGSL 194 (391)
T ss_dssp TTCSBCGGGSGGGCCT--------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSS
T ss_pred cccCcCHHHHHHhcCC--------CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccc--eECCeeeccc
Confidence 5678899988776642 577776 468999999998 4567899999999999998765 22222 222
Q ss_pred CCcEEEEc--ccccCCCCCCceEEEEEeC
Q 002866 354 RPDFIITS--FYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 354 ~~DFlv~S--~HK~fG~~PtGvG~LyVRk 380 (872)
.|+.++| .||++++ + ..|+++.++
T Consensus 195 -~di~~~S~s~~K~l~~-g-~gg~~~~~~ 220 (391)
T 3dr4_A 195 -GDCATFSFFGNAIITT-G-EGGMITTND 220 (391)
T ss_dssp -SSEEEEECBTTSSSCC-B-SCEEEEESC
T ss_pred -CCEEEEECCCCCcCCc-C-CeEEEEECC
Confidence 3555555 7799984 2 244554443
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-16 Score=170.72 Aligned_cols=166 Identities=10% Similarity=0.034 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+++|++||+++|++ .+++++|+|+|+++++.++ +++||+||+.. .+|.++.. +...+++.|+++.+++.+
T Consensus 83 ~~~~le~~lA~l~g~~----~~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~-~~y~~~~~~~~~~l~~~G~~v~~v~~~- 155 (415)
T 2fq6_A 83 THFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTN-TAYEPSQDFCSKILSKLGVTTSWFDPL- 155 (415)
T ss_dssp HHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEET-TSCHHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred hHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeC-CCchHHHHHHHHHHHHcCcEEEEECCC-
Confidence 4678999999999984 2556688899999999987 57899988774 35555554 334456789999988753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHH--CCcEEEeeccccCCCCCccCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQ--NHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are--~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
++++|+++|. ++|+||.+++.+|+||.++|++. .+.|++ +|+++++|++|+.+....++ .+
T Consensus 156 -----d~~~le~ai~--------~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~---~~ 219 (415)
T 2fq6_A 156 -----IGADIVKHLQ--------PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL---DF 219 (415)
T ss_dssp -----CGGGGGGGCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG---GG
T ss_pred -----CHHHHHHhhc--------cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc---cc
Confidence 5677776664 35899999999999999999985 567899 99999999999865321344 36
Q ss_pred CCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 354 RPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++|++++|+||++|+ |.+ .|+++.+++.++.+.
T Consensus 220 g~Div~~S~sK~lg~-~g~~~~G~l~~~~~~~~~l~ 254 (415)
T 2fq6_A 220 GIDVSIQAATKYLVG-HSDAMIGTAVCNARCWEQLR 254 (415)
T ss_dssp TCSEEEEETTTTTTC-SSSCCCEEEEECTTTHHHHH
T ss_pred CCeEEEEeCccccCC-CCCceEEEEEeCHHHHHHHH
Confidence 899999999999995 333 699998887655543
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=172.40 Aligned_cols=165 Identities=11% Similarity=0.074 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-HHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-QSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-~~AkrkGaeV~~Vpvd 275 (872)
..++++|++||+++|++ + .|+|++| ++|+++++.++ +++|++||+... .|.++..+. ..+++.|++++.++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~-~--~v~~~sG-~~Ai~~al~~l-~~~Gd~Vi~~~~-~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAE-S--TLLMASG-MCASTVMLLAL-VPAGGHIVTTTD-CYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHHHH-SCSSCEEEEETT-SCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred hHHHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHH-hCCCCEEEEcCC-CchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 45788999999999985 2 4666555 59999999876 478999887754 455555443 3466789999998753
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCc-eEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAA-GLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T-~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+.++|+++|.. +| ++|.+.+.+|+||.++|++. .+.|+++|+++++|.+|+.+.. .+.-.+
T Consensus 188 ------d~~~l~~ai~~--------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~---~~~~~~ 250 (445)
T 1qgn_A 188 ------DVGALELALNQ--------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN---QKALAL 250 (445)
T ss_dssp ------CHHHHHHHHHH--------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---CCTTTT
T ss_pred ------CHHHHHHHhcc--------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc---CCcccc
Confidence 67899998864 47 99999999999999999984 5678999999999999987752 223356
Q ss_pred CCcEEEEcccccCCCCCCc---eEEEEEeCCCcccc
Q 002866 354 RPDFIITSFYRVFGFDPTG---FGCLLIKKSVMGSL 386 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L 386 (872)
++|+++.|+||+|| |.| +|+++.++++++.|
T Consensus 251 g~Div~~S~sK~~g--g~gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 251 GADLVLHSATKFLG--GHNDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp TCSEEEECTTTTTT--CSSSCCCEEEEECHHHHHHH
T ss_pred CCEEEEECCccccc--ccccceEEEEEECHHHHHHH
Confidence 89999999999999 556 99999988765544
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-16 Score=169.23 Aligned_cols=159 Identities=9% Similarity=0.027 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEE-ec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSA-WF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~V-pv 274 (872)
..++++|++||+++|++ +.|+| .++|+|+++++.++ +++|++|++.. ..|.++ ..+...++..|++++.+ +.
T Consensus 58 ~~~~~l~~~la~~~g~~---~~v~~-~sGt~A~~~~l~~~-~~~gd~vi~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGK---AALAT-ASGHAAQFLALTTL-AQAGDNIVSTP-NLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEE-SSHHHHHHHHHHHH-CCTTCEEEECS-CCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred hHHHHHHHHHHHHhCCC---ceEEe-cCHHHHHHHHHHHH-hCCCCEEEEeC-CCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 46788999999999985 23555 45599999999887 67899988764 344444 44544467789999887 54
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccc-cCCCCCccCCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGS-LGPKDMDSLGLSL 352 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ-~aG~~mipLDLs~ 352 (872)
+ +.++|+++|.. +|++|++++.+|.+|.++|++ +.+.|+++|+++++|++| ..|....++ .
T Consensus 132 ~------d~~~l~~~i~~--------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~---~ 194 (421)
T 2ctz_A 132 E------RPEEFLALTDE--------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL---A 194 (421)
T ss_dssp C------CHHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG---G
T ss_pred C------CHHHHHHhhcc--------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcc---c
Confidence 3 57888877742 589999999999999999997 456789999999999999 877521123 4
Q ss_pred CCCcEEEEcccccCCCCCCc-eEEEEEe
Q 002866 353 FRPDFIITSFYRVFGFDPTG-FGCLLIK 379 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtG-vG~LyVR 379 (872)
.++|++++|+||+||+ |.+ +|++++.
T Consensus 195 ~~~Di~~~s~~K~l~~-~g~~~G~~~~~ 221 (421)
T 2ctz_A 195 WGAALVTHSLTKWVGG-HGAVIAGAIVD 221 (421)
T ss_dssp GTCSEEEEETTTTTTC-SSCCCCEEEEE
T ss_pred cCCeEEEECCcccccC-CCCcEEEEEEe
Confidence 6899999999999997 553 7888886
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=164.34 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd 275 (872)
....+.|++||+++|++ + .|+|++| |+|+++++.++ +++|++|++... .|.++. .+...++..|+++..++.+
T Consensus 52 ~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~-~~~g~~vl~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVF-LKPGDLLVAPHD-CYGGSYRLFDSLAKRGCYRVLFVDQG 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEETT-CCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred ccHHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecC-CcHhHHHHHHHHHHhcCCEEEEeCCC
Confidence 34678999999999986 2 4666655 99999999887 578999887643 455443 4545567789999988753
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
+.++|+++|.. ++++|.+++.+|.||.++|++. .+.|+++|+++++|.+|..+. ....+ .++
T Consensus 126 ------d~~~l~~~i~~--------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~-~~~ 188 (386)
T 1cs1_A 126 ------DEQALRAALAE--------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA--LQNPL-ALG 188 (386)
T ss_dssp ------CHHHHHHHHHT--------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT--TCCGG-GGT
T ss_pred ------CHHHHHHhhcc--------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCcc-ccC
Confidence 67889888863 4789999999999999999985 567899999999999998875 23333 468
Q ss_pred CcEEEEcccccCCCCCCce--EEEEEeC-CCccccc
Q 002866 355 PDFIITSFYRVFGFDPTGF--GCLLIKK-SVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGv--G~LyVRk-~~i~~L~ 387 (872)
+|++++|+||+||+ |.+. |++++++ ++++.+.
T Consensus 189 ~di~~~s~sK~~~~-~~~~~~G~~~~~~~~l~~~l~ 223 (386)
T 1cs1_A 189 ADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTELA 223 (386)
T ss_dssp CSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHH
T ss_pred ceEEEEcCcccccC-CCCceeEEEEeCcHHHHHHHH
Confidence 99999999999987 7774 9999987 6666554
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=163.62 Aligned_cols=205 Identities=10% Similarity=0.012 Sum_probs=148.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
..|.|+.+++..-+.+.+++.. | .+......|+. ......+++|+++++++|++ .++++.++|+|+
T Consensus 27 ~~~~d~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~-~~~~~~~~l~~~la~~~g~~----~~i~~~sG~~a~ 92 (398)
T 2rfv_A 27 LSTPIFQTSTFVFDSAEQGAAR---F------ALEESGYIYTR-LGNPTTDALEKKLAVLERGE----AGLATASGISAI 92 (398)
T ss_dssp SSCCCCCCSBCCCSSHHHHHHH---C-----------CCSBTT-TCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHH
T ss_pred cCCCCcCCCccccCCHHHHHHh---h------cCCCCCCceeC-CCChHHHHHHHHHHHHhCCC----cEEEECCHHHHH
Confidence 6799999999877665554210 0 01000111221 11356789999999999985 266666778999
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
++++.++ +++|++|++... .|.++. .+...++..|++++.++.+ +.++|+++|.. ++++|.++
T Consensus 93 ~~~l~~~-~~~gd~vi~~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~--------~~~~v~~~ 156 (398)
T 2rfv_A 93 TTTLLTL-CQQGDHIVSASA-IYGCTHAFLSHSMPKFGINVRFVDAA------KPEEIRAAMRP--------ETKVVYIE 156 (398)
T ss_dssp HHHHHHH-CCTTCEEEEESS-SCHHHHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCT--------TEEEEEEE
T ss_pred HHHHHHH-hCCCCEEEEcCC-CcccHHHHHHHHHHHcCCEEEEeCCC------CHHHHHHhcCC--------CCeEEEEE
Confidence 9999887 578999887643 455554 3444457789999988763 57888777742 58999999
Q ss_pred CccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCcc-
Q 002866 309 VQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMG- 384 (872)
Q Consensus 309 ~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~- 384 (872)
+.+|.||.++|++. .+.|+++|+++++|.++..+.. ...+ .+++|+++.|+||+||+ |.+ .|+++++++.+.
T Consensus 157 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~-~~~~di~~~s~sK~~~~-~g~~~~G~~~~~~~~~~~ 232 (398)
T 2rfv_A 157 TPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC--QQPL-QLGADIVVHSVTKYING-HGDVIGGIIVGKQEFIDQ 232 (398)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT--CCGG-GGTCSEEEEETTTTTTC-SSCCCCEEEEECHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc--CCch-hhCCcEEEEeCcccccC-CCCceEEEEEECHHHHHH
Confidence 99999999999975 5678999999999999987752 2112 35799999999999987 666 599999987765
Q ss_pred cccC
Q 002866 385 SLQN 388 (872)
Q Consensus 385 ~L~P 388 (872)
.+.+
T Consensus 233 ~~~~ 236 (398)
T 2rfv_A 233 ARFV 236 (398)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4543
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=155.65 Aligned_cols=211 Identities=10% Similarity=0.070 Sum_probs=152.4
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.+++|+.+.... .|+.+++++.+ .+.. .++.|. ....+.|++||+++|++++ .|+||+|+|+
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~-----------~~~~--~~~y~~--~~~~~l~~~la~~~~~~~~--~i~~~~g~~~ 79 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARD-----------AVVK--ANRYAK--NEILMLGNKLAAHHQVEAP--SILLTAGSSE 79 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHH-----------TGGG--TTSCCH--HHHHHHHHHHHHHTTSCGG--GEEEESHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHH-----------HHhh--CcCCCC--CchHHHHHHHHHHhCCChH--HEEEeCChHH
Confidence 378888776543 56777776432 1111 223343 3567999999999999776 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
|+++++.++ .++|++|++... .|.+ +...++..|++++.+|++. +..++.++|+++|.. .+++++|.+
T Consensus 80 a~~~~~~~l-~~~gd~vl~~~~-~~~~---~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~------~~~~~~v~l 147 (354)
T 3ly1_A 80 GIRAAIEAY-ASLEAQLVIPEL-TYGD---GEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAA------YSGPSIVYL 147 (354)
T ss_dssp HHHHHHHHH-CCTTCEEEEESS-SCTH---HHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHT------CSSCEEEEE
T ss_pred HHHHHHHHH-hCCCCeEEECCC-CchH---HHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhcc------CCCCCEEEE
Confidence 999999987 478999886632 3333 3455677899999999985 477899999999963 135899999
Q ss_pred eCccCcccchhcHHHH-HHHHH--CCcEEEeeccccCCCCC-ccCC----CCCC-CCcEEEEcccccCCCCCCceEEEEE
Q 002866 308 PVQSRVTGAKYSYQWM-ALAQQ--NHWHVLLDAGSLGPKDM-DSLG----LSLF-RPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 308 p~vSNvTG~i~PLe~I-~~Are--~G~~VLVDAAQ~aG~~m-ipLD----Ls~l-~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
++.+|.||.++|++.+ +.++. +|+++++|.++...... .... +... +.++++.|++|+||.+..++|++++
T Consensus 148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 148 VNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 9999999999999754 44455 89999999997632100 0001 1223 6679999999999831345899999
Q ss_pred eCCCcccccC
Q 002866 379 KKSVMGSLQN 388 (872)
Q Consensus 379 Rk~~i~~L~P 388 (872)
+++.++.+..
T Consensus 228 ~~~~~~~~~~ 237 (354)
T 3ly1_A 228 HPTVIALMGR 237 (354)
T ss_dssp CHHHHHHHGG
T ss_pred CHHHHHHHHH
Confidence 8877766654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=158.13 Aligned_cols=202 Identities=11% Similarity=0.104 Sum_probs=144.8
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
.+++|+.+...+ .|+.+.+++.+ .+... ...|+.+. ...+.|+.||++++ ++++ .|+|
T Consensus 30 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~~---~~~~l~~~la~~~~~~~g~~~~~~--~v~~ 94 (370)
T 2z61_A 30 KVIHLEIGEPDFNTPKPIVDEGIK-------SLKEG---KTHYTDSR---GILELREKISELYKDKYKADIIPD--NIII 94 (370)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHHSSCCCCGG--GEEE
T ss_pred CEEEccCCCCCCCCCHHHHHHHHH-------HHHcC---ccCCCCCC---CCHHHHHHHHHHHHHHhCCCCChh--hEEE
Confidence 478999888764 46777776432 12111 12344321 23468888888875 5554 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+|+.+++.++ +++|++|++..- .|.+.. ..++..|+++..+| ++.++|++++.. +
T Consensus 95 ~~g~~~a~~~~~~~~-~~~gd~vl~~~p-~~~~~~---~~~~~~g~~~~~v~-------~d~~~l~~~l~~--------~ 154 (370)
T 2z61_A 95 TGGSSLGLFFALSSI-IDDGDEVLIQNP-CYPCYK---NFIRFLGAKPVFCD-------FTVESLEEALSD--------K 154 (370)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEESS-CCTHHH---HHHHHTTCEEEEEC-------SSHHHHHHHCCS--------S
T ss_pred CCChHHHHHHHHHHh-cCCCCEEEEeCC-CchhHH---HHHHHcCCEEEEeC-------CCHHHHHHhccc--------C
Confidence 999999999999987 578999877632 344443 34566899998876 567888877742 5
Q ss_pred ceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCC-ccCCCCC----CCCcEEEEcccccCCCCCCc--eE
Q 002866 302 AGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDM-DSLGLSL----FRPDFIITSFYRVFGFDPTG--FG 374 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~m-ipLDLs~----l~~DFlv~S~HK~fG~~PtG--vG 374 (872)
+++|.+++.+|.||.++|+++++.|+++|+++++|.++..+... .+.++.. .+.|+++.|+||+|| +.| +|
T Consensus 155 ~~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G 232 (370)
T 2z61_A 155 TKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA--MTGWRIG 232 (370)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT--CGGGCCE
T ss_pred ceEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC--CccceEE
Confidence 88999999999999999999446789999999999998754300 0223332 367999999999998 458 89
Q ss_pred EEEEeCCCccccc
Q 002866 375 CLLIKKSVMGSLQ 387 (872)
Q Consensus 375 ~LyVRk~~i~~L~ 387 (872)
++++++++++.+.
T Consensus 233 ~~~~~~~~~~~~~ 245 (370)
T 2z61_A 233 YVISNDEIIEAIL 245 (370)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 9999887666554
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=169.50 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd 275 (872)
..++++|++||+++|++ + .|+||+ +|+|+++++. + +++|++|++... +|.++.. +...++..|++++.+|++
T Consensus 55 ~~~~~lr~~la~~~g~~-~--~i~~~s-Gt~a~~~al~-~-~~~gd~Vi~~~~-~y~~~~~~~~~~~~~~G~~v~~v~~~ 127 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ-Y--GLAFSS-GSATTATILQ-S-LPQGSHAVSIGD-VYGGTHRYFTKVANAHGVETSFTNDL 127 (393)
T ss_dssp HHHHHHHHHHHHHTTCS-E--EEEESC-HHHHHHHHHH-T-SCSSCEEEEESS-CCHHHHHHHHHTSTTTCSCCEEESSH
T ss_pred hhHHHHHHHHHHHhCCC-c--EEEECC-hHHHHHHHHH-H-cCCCCEEEEeCC-CchHHHHHHHHHHHHcCcEEEEeCCC
Confidence 45789999999999986 2 355555 5999999998 5 578999887753 4554443 334566779999988764
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHC----CcEEEeeccccCCCCCccCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQN----HWHVLLDAGSLGPKDMDSLGL 350 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~----G~~VLVDAAQ~aG~~mipLDL 350 (872)
+ ++|+++|. ++|++|.+++.+|+||.++|++. .+.|+++ |+++++|++|+.+. . .++
T Consensus 128 ------d-~~l~~~i~--------~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~--~-~~~ 189 (393)
T 1n8p_A 128 ------L-NDLPQLIK--------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY--I-SNP 189 (393)
T ss_dssp ------H-HHHHHHSC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH--H-CCG
T ss_pred ------h-HHHHHhcc--------cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccc--c-CCH
Confidence 4 66766664 25899999999999999999984 5678999 99999999998775 2 245
Q ss_pred CCCCCcEEEEcccccCCCCCCc--e-EEEEEe-CCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTG--F-GCLLIK-KSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtG--v-G~LyVR-k~~i~~L~ 387 (872)
..+++|++++|+||+|| |.| + |+++++ ++.++.+.
T Consensus 190 ~~~~~di~~~S~sK~~g--~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 190 LNFGADIVVHSATKYIN--GHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp GGGTCSEEEEETTTTTT--CSSCCCCEEEEESCHHHHHHHH
T ss_pred HHcCCeEEEEECccccc--CCCCceeEEEEeCCHHHHHHHH
Confidence 55689999999999999 568 7 888876 45555443
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-15 Score=157.18 Aligned_cols=212 Identities=13% Similarity=0.128 Sum_probs=148.2
Q ss_pred CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCCCCCCc-EEE
Q 002866 148 SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIPENEYG-LVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~~dEY~-VVF 221 (872)
..+++|+.+...+ .++.+.+++.+ .+... ...|+.+. ...+.|++||+++ |.+.+... |+|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~~---g~~~l~~~la~~~~~~~g~~~~~~~~v~~ 92 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKE-------ALDKG---LTHYGPNI---GLLELREAIAEKLKKQNGIEADPKTEIMV 92 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHHHCCCCCTTTSEEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHH-------HHhCC---CCCCCCCC---CcHHHHHHHHHHHHHHhCCCCCCCCeEEE
Confidence 4689999887763 56677776432 12111 11343321 2347888888888 84322226 999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+.+++.++ +++|++|++... .|.++. ..++..|+++..+|++.. +..++.++|++++..
T Consensus 93 ~~g~~~a~~~~~~~~-~~~gd~vl~~~~-~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------- 159 (389)
T 1gd9_A 93 LLGANQAFLMGLSAF-LKDGEEVLIPTP-AFVSYA---PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-------- 159 (389)
T ss_dssp ESSTTHHHHHHHTTT-CCTTCEEEEEES-CCTTHH---HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT--------
T ss_pred cCChHHHHHHHHHHh-CCCCCEEEEcCC-CchhHH---HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc--------
Confidence 999999999999988 578999876632 344443 345567999999998742 345789999887742
Q ss_pred CceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCCC-c-cCCCCC----CCCcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKDM-D-SLGLSL----FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~m-i-pLDLs~----l~~DFlv~S~HK~fG~~P 370 (872)
++++|.+++.+|.||.++| ++ +++.|+++|+++++|.++..+... . ...+.. .++|+++.|+||+|| +
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~--~ 237 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA--M 237 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT--C
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC--C
Confidence 4789999999999999997 44 356779999999999998764310 0 122322 457999999999998 4
Q ss_pred Cc--eEEEEEeCCCccccc
Q 002866 371 TG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 371 tG--vG~LyVRk~~i~~L~ 387 (872)
.| +|+++++++.++.+.
T Consensus 238 ~G~r~G~~~~~~~~~~~l~ 256 (389)
T 1gd9_A 238 TGWRLGFVAAPSWIIERMV 256 (389)
T ss_dssp GGGCCEEEECCHHHHHHHH
T ss_pred cccceEEEEECHHHHHHHH
Confidence 57 699999877665554
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=162.69 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=147.2
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VVF 221 (872)
.+++|+.+... +.|+.+.+++.+ .+ ... ...|+.+ ....+.|+.||+++ |+ +++ .|+|
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~-~~~--~~~y~~~---~g~~~lr~~la~~~~~~~g~~~~~~--~v~~ 106 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVR-------FL-QKG--EVKYTDP---RGIYELREGIAKRIGERYKKDISPD--QVVV 106 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHH-------HH-TTC--CCCCCCT---TCCHHHHHHHHHHHHHHHTCCCCGG--GEEE
T ss_pred CEEEccCCCCCCCCCHHHHHHHHH-------HH-hcC--CCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCHH--HEEE
Confidence 47899888765 346677776432 11 110 1124332 12357888888887 76 444 6999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+.+++.++ +++|++|++... .|.++. ..++..|+++..+|.+.. +..++.++|+++|..
T Consensus 107 ~~g~t~al~~~~~~l-~~~gd~Vl~~~~-~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------- 173 (389)
T 1o4s_A 107 TNGAKQALFNAFMAL-LDPGDEVIVFSP-VWVSYI---PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-------- 173 (389)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT--------
T ss_pred ecCHHHHHHHHHHHh-CCCCCEEEEcCC-CchhHH---HHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc--------
Confidence 999999999999987 578999876532 344443 345668999999998642 346788999887742
Q ss_pred CceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCCC-ccCCCCC----CCCcEEEEcccccCCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKDM-DSLGLSL----FRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~m-ipLDLs~----l~~DFlv~S~HK~fG~~Pt 371 (872)
++++|.+++.+|.||.++| ++ +++.|+++|+++++|.++..+... -..++.. .+.|+++.|+||+|| +.
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~~ 251 (389)
T 1o4s_A 174 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS--MT 251 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT--CG
T ss_pred CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC--Cc
Confidence 5889999999999999999 54 456789999999999998754310 0122221 468999999999998 45
Q ss_pred c--eEEEEEeCCCccccc
Q 002866 372 G--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 G--vG~LyVRk~~i~~L~ 387 (872)
| +|+++++++.++.+.
T Consensus 252 G~r~G~l~~~~~~~~~l~ 269 (389)
T 1o4s_A 252 GWRVGYLISSEKVATAVS 269 (389)
T ss_dssp GGCCEEEECCHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHH
Confidence 7 899999877665554
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=167.75 Aligned_cols=208 Identities=10% Similarity=-0.017 Sum_probs=149.1
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC----CCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG----GAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg----NpsS~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
..+||+ +.+....+.+++++.+ .......|. .+...+.++++++.+++++|++. .++||++
T Consensus 67 ~~~~lg-~~~~~~~p~v~~~~~~-----------~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~g 131 (474)
T 1wyu_B 67 TFYPLG-SCTMKYNPKLHEEAAR-----------LFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAA 131 (474)
T ss_dssp SCCCBT-TTCCCCCCHHHHHHHH-----------TTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSS
T ss_pred Cccccc-cccccCCHHHHHHHHH-----------HHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChH
Confidence 478999 5566555556665432 111111121 11124688899999999999964 4789999
Q ss_pred HHHHHHHH---HhhCCCCCCC-----eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 225 RGSAFKLL---AESYPFHTNK-----KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 225 ATeALnLV---aeslpf~~Gd-----~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
+|+|+.+. +..+..++|+ +||+.. ..|.+... .++..|++++.+|++. ++.++.++|+++|..
T Consensus 132 gt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~-~~h~~~~~---~~~~~G~~vv~v~~~~-~~~~d~~~L~~~i~~---- 202 (474)
T 1wyu_B 132 GAHGELTGILIIRAYHEDRGEGRTRRVVLVPD-SAHGSNPA---TASMAGYQVREIPSGP-EGEVDLEALKRELGP---- 202 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTCCEEEEET-TSCTHHHH---HHHHTTCEEEEECBCT-TSSBCHHHHHHHCST----
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCEEEEeC-CcChhhHH---HHHHCCCEEEEecCCC-CCCcCHHHHHHhhCC----
Confidence 99998863 3222223555 777663 45665553 3566899999999975 588999999988853
Q ss_pred CCCCCceEEEEeCccCcccch-hcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCC---
Q 002866 297 KKDSAAGLFVFPVQSRVTGAK-YSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPT--- 371 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i-~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~Pt--- 371 (872)
+|++|.+++. |.+|.+ .|++. .+.|+++|+++++|+++..+. .-.++...+++|++++|+||+|+. |.
T Consensus 203 ----~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~-~g~~~~~~~g~di~~~s~~K~~~~-p~g~g 275 (474)
T 1wyu_B 203 ----HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAI-MGWARPGDMGFDVVHLNLHKTFTV-PHGGG 275 (474)
T ss_dssp ----TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTCCHHHHTCSEEECCTTTTTCC-CCTTS
T ss_pred ----CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhh-ccCCCcccCCCcEEEEeCcccccc-CCCCC
Confidence 4889999985 679998 69974 567899999999999997654 113444556899999999999988 76
Q ss_pred --ceEEEEEeCCCccccc
Q 002866 372 --GFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 --GvG~LyVRk~~i~~L~ 387 (872)
|+|+++++++.++.+.
T Consensus 276 G~~~G~~~~~~~l~~~l~ 293 (474)
T 1wyu_B 276 GPGSGPVGVKAHLAPYLP 293 (474)
T ss_dssp CCCCCCEEECGGGGGGCC
T ss_pred CCCeEEEEEcHHHHHhCC
Confidence 6999999998777665
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=160.53 Aligned_cols=211 Identities=14% Similarity=0.041 Sum_probs=148.3
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
.+++|+.+.... .++.+++++.+ .+.... ...|+.+. .+.+.|++||++++ ++++ .|+|
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~~--~~~y~~~~---g~~~lr~~la~~~~~~~g~~~~~~--~i~~ 110 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQ-------KLREGV--ASIYPNLD---GLPELKQEASRFAKLFVNIDIPAR--ACVP 110 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHH-------HHHHTG--GGSCCCTT---CCHHHHHHHHHHHHHHHCCCCCGG--GEEE
T ss_pred CEEeccCcCCCCCCCHHHHHHHHH-------HHhCCc--CcCCCCCC---ChHHHHHHHHHHHHHhhCCCCCcc--cEEE
Confidence 478888777654 45677776432 122111 02344432 13578899999888 5555 5999
Q ss_pred eCCHHHHHHHHHhhCCC-CCCC--eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESYPF-HTNK--KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaeslpf-~~Gd--~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++.++.+ ++|+ +|++.. ..|. .+...++..|++++.+|++..+..++.++|+++|..
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~-p~~~---~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~------ 180 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNREYGTLFID-PGFN---LNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQT------ 180 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTCSCCEEEEE-SCCH---HHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT------
T ss_pred eCCHHHHHHHHHHHHhcCCCCCccEEEEeC-CCcH---hHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc------
Confidence 99999999999998743 7899 887652 2233 344456678999999999744456789999988842
Q ss_pred CCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC--CCcc--------CCCCC-CCCcEEEEccc
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK--DMDS--------LGLSL-FRPDFIITSFY 363 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~--~mip--------LDLs~-l~~DFlv~S~H 363 (872)
+++++|.+++.+|.||+++|.+ +++.|+++|+++++|.++.... ...+ .++.. .+.++++.|++
T Consensus 181 -~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 259 (437)
T 3g0t_A 181 -GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSS 259 (437)
T ss_dssp -TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEEST
T ss_pred -CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCc
Confidence 2588999999999999999964 3466799999999999986411 0012 24443 67789999999
Q ss_pred ccCCCCCCceEEEEEeCCCcc
Q 002866 364 RVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 364 K~fG~~PtGvG~LyVRk~~i~ 384 (872)
|+||.+..++|+++++++.++
T Consensus 260 K~~~~~G~r~G~~~~~~~~~~ 280 (437)
T 3g0t_A 260 KAFSYAGQRIGVLMISGKLYE 280 (437)
T ss_dssp TTTSCGGGCCEEEEECHHHHH
T ss_pred cCCCCccceeEEEEECHHHhh
Confidence 999831223999999887665
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.63 Aligned_cols=212 Identities=11% Similarity=0.067 Sum_probs=148.0
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC--CCCCCCcEEEeCCH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN--IPENEYGLVFTVSR 225 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg--A~~dEY~VVFTsnA 225 (872)
+++.|..+.... .|+.+++++.+ ..... ...|+.+ ..+..+++++.+++.+| ++++ .|+||+|+
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~--------~~~~~--~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~--~i~~~~g~ 94 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEE--------KLKVA--AFGYESV-PAEYYKAVADWEEIEHRARPKED--WCVFASGV 94 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHH--------HHTTC--CCCCBCC-CHHHHHHHHHHHHHHHSCCCCGG--GEEEESCH
T ss_pred CceeccccCCCCCCCHHHHHHHHH--------HHhcC--cCCCCCC-CHHHHHHHHHHHHHHhCCCCCHH--HEEECCCH
Confidence 367777665443 56777776432 11110 1123333 34667778888888888 5554 69999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC--CccCHHHHHHHHhhhhccCCCCCce
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT--LKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~--g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+|+++++.++ +++|++|++.. ..|.+ +...++..|+++..+|+++.. ..++.++|+++|.. ++++
T Consensus 95 ~~a~~~~~~~l-~~~gd~vl~~~-~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~ 162 (391)
T 3dzz_A 95 VPAISAMVRQF-TSPGDQILVQE-PVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-------PSVR 162 (391)
T ss_dssp HHHHHHHHHHH-SCTTCEEEECS-SCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-------TTEE
T ss_pred HHHHHHHHHHh-CCCCCeEEECC-CCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-------cCce
Confidence 99999999987 57899988763 33443 344566789999999885322 23799999998862 2589
Q ss_pred EEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccC----CCCCccCCCCCCC---Cc--EEEEcccccCCCCC
Q 002866 304 LFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLFR---PD--FIITSFYRVFGFDP 370 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l~---~D--Flv~S~HK~fG~~P 370 (872)
+|++++.+|.||.++|. + +++.|+++|+++++|.++.. |+ ...++..+. +| +++.|+||+||.+.
T Consensus 163 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G 240 (391)
T 3dzz_A 163 MMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAA 240 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTT
T ss_pred EEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccc
Confidence 99999999999999654 4 34567999999999999874 32 234454444 67 99999999987313
Q ss_pred CceEEEEEe-CCCccccc
Q 002866 371 TGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 371 tGvG~LyVR-k~~i~~L~ 387 (872)
.++|+++++ +++++.+.
T Consensus 241 ~r~G~~~~~~~~~~~~~~ 258 (391)
T 3dzz_A 241 LHAACAIIPNPDLRARAE 258 (391)
T ss_dssp TCCEEEECCSHHHHHHHH
T ss_pred hhheEEEECCHHHHHHHH
Confidence 458999987 55555553
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-15 Score=159.45 Aligned_cols=167 Identities=9% Similarity=0.012 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd 275 (872)
....+.|++||+++|++ .+++++|+|+|+.+++.++ +++|++|++... .|.++ ..+...++..|++++.++.
T Consensus 59 ~~~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~-~y~~~~~~~~~~~~~~g~~~~~v~~- 131 (389)
T 3acz_A 59 PTVEQFEEMVCSIEGAA----GSAAFGSGMGAISSSTLAF-LQKGDHLIAGDT-LYGCTVSLFTHWLPRFGIEVDLIDT- 131 (389)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHTTT-CCTTCEEEEESS-CCHHHHHHHHHHHHHTTCEEEEECT-
T ss_pred hHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCC-CchHHHHHHHHHHHHcCCEEEEECC-
Confidence 35678999999999985 2667777889999999887 678999887643 44444 4455557788999998875
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
.+.++|+++|. ++|++|.++..+|.||.++|++. .+.|+++|+++++|.++..+....+++ ++
T Consensus 132 -----~d~~~l~~~i~--------~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~ 195 (389)
T 3acz_A 132 -----SDVEKVKAAWK--------PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LG 195 (389)
T ss_dssp -----TCHHHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TT
T ss_pred -----CCHHHHHHhcC--------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cC
Confidence 25777877664 25899999999999999999985 567899999999999998765212444 58
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEEeC-CCccccc
Q 002866 355 PDFIITSFYRVFGFDPTG--FGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG--vG~LyVRk-~~i~~L~ 387 (872)
+|+++.|+||+||+ |.+ .|++++++ ++++.+.
T Consensus 196 ~di~~~S~sK~~~~-~~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 196 ADIALHSVSKYING-HGDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp CSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHH
T ss_pred CeEEEECChhhccC-CCCceeEEEEECcHHHHHHHH
Confidence 99999999999988 767 69999998 7666554
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=161.61 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd 275 (872)
...+++|++||+++|++ .++++.++++|+.+++.++ +++|++|++... .|.+.. .|...++..|++++.++.+
T Consensus 62 ~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~-~y~~~~~~~~~~~~~~g~~~~~v~~~ 135 (404)
T 1e5e_A 62 PTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDEC-LYGCTHALFEHALTKFGIQVDFINTA 135 (404)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESC-CCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCC-CchhHHHHHHHHHHHcCCEEEEECCC
Confidence 45678999999999984 3677777789999999887 578999887643 344443 3444567789999998864
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHH-CCcEEEeeccccCCCCCccCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQ-NHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are-~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+.++|+++|.. +|++|.++..+|.||.++|++ +++.|++ +|+++++|.++..+....++ .+
T Consensus 136 ------d~~~l~~~i~~--------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~---~~ 198 (404)
T 1e5e_A 136 ------IPGEVKKHMKP--------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV---DF 198 (404)
T ss_dssp ------STTHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG---GG
T ss_pred ------CHHHHHHhcCC--------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc---cc
Confidence 46778777742 589999999999999999998 4567899 99999999999877521233 35
Q ss_pred CCcEEEEcccccCCCCCCc--eEEEEEeCCCcc-cccCC
Q 002866 354 RPDFIITSFYRVFGFDPTG--FGCLLIKKSVMG-SLQNQ 389 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~-~L~P~ 389 (872)
++|+++.|++|+||+ |.+ .|+++++++.+. .+.+.
T Consensus 199 ~~di~~~S~sK~~~~-~g~ri~G~~~~~~~~~~~~l~~~ 236 (404)
T 1e5e_A 199 GVDVVVHSATKYING-HTDVVAGLICGKADLLQQIRMVG 236 (404)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEECHHHHHHHHHTC
T ss_pred CCEEEEEcCccccCC-CCCCeEEEEEECHHHHHHHHHHH
Confidence 899999999999997 666 699999998776 67654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-14 Score=148.82 Aligned_cols=211 Identities=9% Similarity=0.081 Sum_probs=149.5
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHh------cCCCCCCCcEEEe
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDH------LNIPENEYGLVFT 222 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~l------LgA~~dEY~VVFT 222 (872)
.++|+.+... +.++.+++++.+ .+.........|+.+. ..+.|++||++ ++++++ .|+||
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~-------~~~~~~~~~~~y~~~~----~~~l~~~la~~l~~~~g~~~~~~--~v~~~ 98 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVA-------TVDKIATELNRYPERD----AVELRDELAAYITKQTGVAVTRD--NLWAA 98 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHH-------HHHHHGGGTTSCCCTT----CHHHHHHHHHHHHHHHCCCCCGG--GEEEE
T ss_pred ceeccCCCCCCCCCHHHHHHHHH-------HHHhcccccccCCCcc----HHHHHHHHHHhhhhcccCCCChH--hEEEC
Confidence 4788877654 356777777543 1221100112344332 14788899998 566655 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+|+|+++++.++ .++|++|++... .|.++ ...++..|+++..+|.+. +..++.++|++++... ++
T Consensus 99 ~G~~~al~~~~~~l-~~~gd~Vl~~~~-~y~~~---~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~-------~~ 165 (369)
T 3cq5_A 99 NGSNEILQQLLQAF-GGPGRTALGFQP-SYSMH---PILAKGTHTEFIAVSRGA-DFRIDMDVALEEIRAK-------QP 165 (369)
T ss_dssp SHHHHHHHHHHHHH-CSTTCEEEEEES-SCTHH---HHHHHHTTCEEEEEECCT-TSSCCHHHHHHHHHHH-------CC
T ss_pred CChHHHHHHHHHHh-cCCCCEEEEcCC-ChHHH---HHHHHHcCCEEEEecCCc-CCCCCHHHHHHHhhcc-------CC
Confidence 99999999999887 478899876632 34433 334566899999999864 4568999999988641 37
Q ss_pred eEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCC-ccCCC-CCCC-CcEEEEcccccCCCCCCc--eEEE
Q 002866 303 GLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDM-DSLGL-SLFR-PDFIITSFYRVFGFDPTG--FGCL 376 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~m-ipLDL-s~l~-~DFlv~S~HK~fG~~PtG--vG~L 376 (872)
++|.+++.+|.||.++|++.+ +.++..++++++|.++..+... ..+++ ...+ .++++.|++|+||. .| +|++
T Consensus 166 ~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~r~G~~ 243 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDF--AGGRLGYF 243 (369)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSC--GGGCCEEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCC--cccceEEE
Confidence 888899999999999999855 5668888999999998755310 11222 2345 67999999999984 36 6999
Q ss_pred EEeCCCcccccC
Q 002866 377 LIKKSVMGSLQN 388 (872)
Q Consensus 377 yVRk~~i~~L~P 388 (872)
++++++++.+..
T Consensus 244 ~~~~~~~~~l~~ 255 (369)
T 3cq5_A 244 VANPAFIDAVML 255 (369)
T ss_dssp EECTHHHHHHHT
T ss_pred EeCHHHHHHHHH
Confidence 999887776654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=152.44 Aligned_cols=214 Identities=13% Similarity=0.068 Sum_probs=148.7
Q ss_pred ceecccCCCC--CCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCC-CcEEEeCCH
Q 002866 150 KVCLDYCGFG--LFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENE-YGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDyAAtg--p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dE-Y~VVFTsnA 225 (872)
++.|..+... +.++.+++++.+ .+.... ...|+. +...+..+++++.+++++|++.+. ..|+||+|+
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~-------~~~~~~--~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~ 111 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSA-------GVQSGG--VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGT 111 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHH-------HHHHTH--HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHH-------HHhcCC--CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence 5677665544 355677776533 111110 012332 223467778888899999985311 259999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-----CCCccCHHHHHHHHhhhhccCCCC
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-----PTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-----p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+.+++.++ +++|+.|++..- .|.+ +...++..|+++..+|++. .+..++.++|+++|..
T Consensus 112 ~~a~~~~~~~l-~~~gd~vl~~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------- 178 (407)
T 3nra_A 112 QGALFLAVAAT-VARGDKVAIVQP-DYFA---NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-------- 178 (407)
T ss_dssp HHHHHHHHHTT-CCTTCEEEEEES-CCTH---HHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT--------
T ss_pred HHHHHHHHHHh-CCCCCEEEEcCC-cccc---hHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh--------
Confidence 99999999987 578999876532 3443 3345667899999999831 3567899999999863
Q ss_pred CceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccCCCC-----CCCCcEEEEcccccCC
Q 002866 301 AAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLS-----LFRPDFIITSFYRVFG 367 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs-----~l~~DFlv~S~HK~fG 367 (872)
++++|++++.+|.||.++| ++ +++.|+++|+++++|.++.. |+. ...+. ..+.++++.|++|+||
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g 256 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS--YTHLRAEAAVDAENVVTIMGPSKTES 256 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCC--CCCGGGCTTSCGGGEEEEECSSSTTC
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CCChhhcCcccCCcEEEEeCcccccC
Confidence 4789999999999999999 54 45678999999999999875 321 22222 2456799999999998
Q ss_pred CCCCceEEEEEeCCCccccc
Q 002866 368 FDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 368 ~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+..++|+++.++++++.+.
T Consensus 257 ~~G~r~G~~~~~~~~~~~l~ 276 (407)
T 3nra_A 257 LSGYRLGVAFGSRAIIARME 276 (407)
T ss_dssp CGGGCCEEEEECHHHHHHHH
T ss_pred CCeeeEEEEEcCHHHHHHHH
Confidence 31234799888777665554
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=152.68 Aligned_cols=210 Identities=10% Similarity=0.080 Sum_probs=147.2
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VVF 221 (872)
++++|+.+...+ .++.+.+++.+ .+ ... ...|+.+. ...+.|++|++++ |+ +++ ..|+|
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~-~~~--~~~y~~~~---g~~~l~~~la~~l~~~~g~~~~~~-~~v~~ 96 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAH-------HV-AQG--ANQYAPMT---GVQALREAIAQKTERLYGYQPDAD-SDITV 96 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHH-------HH-HTT--CCSCCCTT---CCHHHHHHHHHHHHHHHSCCCCTT-TTEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHH-------HH-Hhh--ccCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCC-CCEEE
Confidence 578999887653 56777776432 11 110 12343321 1346777777774 74 443 15999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+|+.+++.++ .++|++|++..- .|.... ..++..|+++..+|++..+..++.++|+++|.. +
T Consensus 97 ~~g~~~a~~~~~~~~-~~~gd~vl~~~p-~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--------~ 163 (386)
T 1u08_A 97 TAGATEALYAAITAL-VRNGDEVICFDP-SYDSYA---PAIALSGGIVKRMALQPPHFRVDWQEFAALLSE--------R 163 (386)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT--------T
T ss_pred cCChHHHHHHHHHHh-CCCCCEEEEeCC-CchhHH---HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcc--------c
Confidence 999999999999987 578999876532 334333 345668999999998754456899999887742 5
Q ss_pred ceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCCccC-CCC-CCCCcEEEEcccccCCCCCC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDMDSL-GLS-LFRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~mipL-DLs-~l~~DFlv~S~HK~fG~~Pt 371 (872)
+++|.+++.+|.||.++|.+ +++.|+++|+++++|.++.. |....++ .+. ..+.|+++.|+||+|| +.
T Consensus 164 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~ 241 (386)
T 1u08_A 164 TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH--MT 241 (386)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT--CG
T ss_pred CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC--Cc
Confidence 88999999999999999863 34667899999999999865 3211122 221 2478999999999998 45
Q ss_pred c--eEEEEEeCCCccccc
Q 002866 372 G--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 G--vG~LyVRk~~i~~L~ 387 (872)
| +|+++++++.++.+.
T Consensus 242 G~r~G~~~~~~~~~~~l~ 259 (386)
T 1u08_A 242 GWKVGYCVAPAPISAEIR 259 (386)
T ss_dssp GGCCEEEECCHHHHHHHH
T ss_pred ccceEEEEcCHHHHHHHH
Confidence 8 899999887666554
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=158.18 Aligned_cols=159 Identities=10% Similarity=-0.004 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd 275 (872)
..++++|++||+++|++ .++||+|+|+|+++++.++ +++|++|++... .|.++. .+...+++.|+++..++++
T Consensus 66 ~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~-~y~~~~~~~~~~~~~~g~~~~~v~~~ 139 (392)
T 3qhx_A 66 PTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDD-AYGGTFRLIDKVFTGWNVEYTPVALA 139 (392)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETT-CCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCC-CcchHHHHHHHHHHhcCcEEEEeCCC
Confidence 34678999999999985 3899999999999999877 678999887643 444443 3334457789999998764
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
+.++|+++|.. +|++|.++..+|.||.++|++. .+.|+++|+++++|.+|+.+. ..+.-.++
T Consensus 140 ------d~~~l~~~i~~--------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~---~~~~~~~~ 202 (392)
T 3qhx_A 140 ------DLDAVRAAIRP--------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA---LQQPLSLG 202 (392)
T ss_dssp ------CHHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT---TCCGGGGT
T ss_pred ------CHHHHHHhhCC--------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc---cCChHHhC
Confidence 57888887742 5899999999999999999985 567899999999999998764 23334568
Q ss_pred CcEEEEcccccCCCCCCc---eEEEEEeC
Q 002866 355 PDFIITSFYRVFGFDPTG---FGCLLIKK 380 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG---vG~LyVRk 380 (872)
+|+++.|+||++|+ .| .|+++.++
T Consensus 203 ~di~~~S~sK~lg~--~g~~~~G~v~~~~ 229 (392)
T 3qhx_A 203 ADVVLHSTTKYIGG--HSDVVGGALVTND 229 (392)
T ss_dssp CSEEEEETTTTTTC--SSCCCCEEEEESC
T ss_pred CcEEEEcCccccCC--CCCceEEEEEECc
Confidence 99999999999995 45 78887764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=158.30 Aligned_cols=190 Identities=14% Similarity=0.046 Sum_probs=137.3
Q ss_pred eecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 151 VCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 151 IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
.|+|++... ++++.+.+++.+ .+.. ..|+ +. ..+.+.|+++|+++|++ .++||+|+|+|+
T Consensus 3 ~~~~~~~~~~~~~~~v~~a~~~-----------~~~~-~~~~-~~--~~~~~l~~~la~~~~~~----~~~~~~sGt~al 63 (367)
T 3nyt_A 3 EFIDLKNQQARIKDKIDAGIQR-----------VLRH-GQYI-LG--PEVTELEDRLADFVGAK----YCISCANGTDAL 63 (367)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH-----------HHHH-CCCS-SC--HHHHHHHHHHHHHHTCS----EEEEESCHHHHH
T ss_pred CcccccccccccCHHHHHHHHH-----------HHhc-CCcc-CC--hHHHHHHHHHHHHhCCC----cEEEeCCHHHHH
Confidence 377777666 345555555321 1111 1232 22 45778999999999985 399999999999
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV 309 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~ 309 (872)
.+++.++.+++|++|++.. ..|.++.. .++..|++++.++++..++.+++++|+++|. +++++|.
T Consensus 64 ~~al~~~~~~~gd~Vi~~~-~~~~~~~~---~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~--- 128 (367)
T 3nyt_A 64 QIVQMALGVGPGDEVITPG-FTYVATAE---TVALLGAKPVYVDIDPRTYNLDPQLLEAAIT--------PRTKAII--- 128 (367)
T ss_dssp HHHHHHTTCCTTCEEEEES-SSCTHHHH---HHHHTTCEEEEECBCTTTCSBCGGGTGGGCC--------TTEEEEC---
T ss_pred HHHHHHhCCCCcCEEEECC-CccHHHHH---HHHHcCCEEEEEecCCccCCcCHHHHHHhcC--------cCCcEEE---
Confidence 9999998778999988763 34555443 3456799999999987657889998887774 2577776
Q ss_pred ccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC--cEEEEcc--cccCCCCCCceEEEEEe
Q 002866 310 QSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP--DFIITSF--YRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 310 vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~--DFlv~S~--HK~fG~~PtGvG~LyVR 379 (872)
.+|.+|...|++ +.+.|+++|+++++|++|+.|. .++....+. |++++|| ||++| +.|.|.+++.
T Consensus 129 ~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~---~~~~~~~~~~~di~~~Sf~~~K~l~--~~g~gg~~~~ 198 (367)
T 3nyt_A 129 PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGA---SYKGKRSCNLSTVACTSFFPSAPLG--CYGDGGAIFT 198 (367)
T ss_dssp CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTC---EETTEETTSSSSEEEEECCTTSSSC--CSSCCEEEEE
T ss_pred eeCCccChhhHHHHHHHHHHcCCEEEEECccccCC---eECCeeccCCCCEEEEECCCCCcCC--CcCceeEEEe
Confidence 678999999998 4567899999999999998775 233333344 9999996 89998 4454444443
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=151.20 Aligned_cols=208 Identities=12% Similarity=0.068 Sum_probs=143.2
Q ss_pred CceecccCCCC----CCcHHHHHHhhhcccccHHHHHHhhcc--CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGFG----LFSYIQTLHYWESSTFSLSEITANLSN--HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAtg----p~p~~VieA~~e~~~F~ls~i~~nL~~--~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|.++.. +.++.+++++.+ .+...... ...|.. .......++|++|++++|++ .++|+
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~-------~~~~~~~~~~~~~~~~-g~~~~~~~l~~~la~~~g~~----~~i~~ 105 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQ-------GAEQFGIGSGGSGHVS-GYSVVHQALEEELAEWLGYS----RALLF 105 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHH-------HHHHHCSCCCSBTTTT-CCCHHHHHHHHHHHHHHTCS----EEEEE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHH-------HHHHhCCCCCCcCccc-CChHHHHHHHHHHHHHhCCC----cEEEe
Confidence 45688988854 255777776533 12111000 001110 11256789999999999984 26667
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
.++|+|+.+++..+ .++|+.|++.. ..|.++.. .++..|+++..+|. ++.++|+++|.+. .+++
T Consensus 106 ~sGt~a~~~~~~~~-~~~gd~v~~~~-~~~~~~~~---~~~~~g~~~~~~~~------~d~~~l~~~l~~~-----~~~~ 169 (384)
T 1bs0_A 106 ISGFAANQAVIAAM-MAKEDRIAADR-LSHASLLE---AASLSPSQLRRFAH------NDVTHLARLLASP-----CPGQ 169 (384)
T ss_dssp SCHHHHHHHHHHHH-CCTTCEEEEET-TCCHHHHH---HHHTSSSEEEEECT------TCHHHHHHHHHSC-----CSSC
T ss_pred CCcHHHHHHHHHHh-CCCCcEEEEcc-cccHHHHH---HHHHcCCCEEEeCC------CCHHHHHHHHHhc-----CCCC
Confidence 77799999988887 46888887663 34555443 34557999988773 3688999888642 1247
Q ss_pred eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC---Ccc-CCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 002866 303 GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD---MDS-LGLSLFRPDFIITSFYRVFGFDPTGFGCLL 377 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~---mip-LDLs~l~~DFlv~S~HK~fG~~PtGvG~Ly 377 (872)
++|.++..+|.||.++|++ +++.|+++|+++++|.++..+.- ..+ .+.-..++|+++.|+||+|| |.| |+++
T Consensus 170 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--~~G-G~~~ 246 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG--VSG-AAVL 246 (384)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS--SCC-EEEE
T ss_pred eEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh--ccC-cEEE
Confidence 8999999999999999997 55778999999999999875530 001 11111368999999999998 678 9999
Q ss_pred EeCCCccccc
Q 002866 378 IKKSVMGSLQ 387 (872)
Q Consensus 378 VRk~~i~~L~ 387 (872)
++++.++.+.
T Consensus 247 ~~~~~~~~l~ 256 (384)
T 1bs0_A 247 CSSTVADYLL 256 (384)
T ss_dssp ECHHHHHHHH
T ss_pred eCHHHHHHHH
Confidence 9887665553
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=159.11 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=142.1
Q ss_pred CceecccCCCC----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc------CCCCCCCc
Q 002866 149 PKVCLDYCGFG----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL------NIPENEYG 218 (872)
Q Consensus 149 ~~IYLDyAAtg----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL------gA~~dEY~ 218 (872)
.+++|+.+..+ +.++.+++++.+ .+... ...|+.+. ...+.|+.||+++ +++++ .
T Consensus 39 ~~i~l~~~~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~~---g~~~l~~~la~~l~~~~g~~~~~~--~ 103 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQPPEHMKEAYCK-------AIKEG---HNYYGDSE---GLPELRKAIVEREKRKNGVDITPD--D 103 (406)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHHHCCCCCGG--G
T ss_pred CEEEecCCCCCcCCCCCCHHHHHHHHH-------HHhcC---CCCCCCCC---CcHHHHHHHHHHHHHhcCCCCCHH--H
Confidence 47899988873 356677776432 12111 11344331 2346888888887 45554 6
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccC
Q 002866 219 LVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 219 VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~ 297 (872)
|+||+|+|+|+.+++.++ +++|++|++..- .|.+ +...++..|+++..+|++. .+..++.++|+++|..
T Consensus 104 v~~t~g~~~al~~~~~~l-~~~gd~Vl~~~~-~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----- 173 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGAL-LDPGDEILVPGP-SYPP---YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD----- 173 (406)
T ss_dssp EEEESHHHHHHHHHHHHH-CCTTCEEEEEES-CCHH---HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-----
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCC-CCcc---HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-----
Confidence 999999999999999987 578999876632 3443 3345567899999999864 2345789999888752
Q ss_pred CCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCC-CccCCCCC--CCC-cEEEEcccccCCCC
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKD-MDSLGLSL--FRP-DFIITSFYRVFGFD 369 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~-mipLDLs~--l~~-DFlv~S~HK~fG~~ 369 (872)
++++|.+++.+|.||.++| ++ +++.|+++|+++++|.++..... .....+.. .+. |+++.|+||+||
T Consensus 174 ---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-- 248 (406)
T 1xi9_A 174 ---RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-- 248 (406)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC--
T ss_pred ---CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC--
Confidence 4889999999999999998 54 45678999999999999865320 00122322 355 899999999998
Q ss_pred CCc--eEEEE--EeC
Q 002866 370 PTG--FGCLL--IKK 380 (872)
Q Consensus 370 PtG--vG~Ly--VRk 380 (872)
+.| +|+++ .++
T Consensus 249 ~~G~r~G~~~~~~~~ 263 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPE 263 (406)
T ss_dssp CGGGCCEEEEEECTT
T ss_pred CCccEEEEEEEecCc
Confidence 457 89999 666
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-15 Score=155.96 Aligned_cols=211 Identities=9% Similarity=0.021 Sum_probs=142.5
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
+||||++..+++++.+++++.+ .......|+.. ....+.|++||+++|++ .++||.|+|+|+
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~-----------~~~~~~~y~~~---~~~~~l~~~la~~~g~~----~~~~~~~gt~a~ 66 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQ-----------AEVGDDVYGED---PTINELERLAAETFGKE----AALFVPSGTMGN 66 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHT-----------CCCCCGGGTCC---HHHHHHHHHHHHHHTCS----EEEEESCHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhc-----------CCCCCcccCCC---hHHHHHHHHHHHHhCCc----eEEEecCcHHHH
Confidence 6899999999877777776422 11111124322 24568999999999984 378999999998
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV 309 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~ 309 (872)
.+++.++ .++||+|++.. ..|.+.......++..|+++..+ .+. ++.++.++|+++|.... ...++|++|.++.
T Consensus 67 ~~~~~~~-~~~gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~v-~~~-~~~~d~~~l~~~i~~~~--~~~~~~~~v~~~~ 140 (347)
T 1jg8_A 67 QVSIMAH-TQRGDEVILEA-DSHIFWYEVGAMAVLSGVMPHPV-PGK-NGAMDPDDVRKAIRPRN--IHFPRTSLIAIEN 140 (347)
T ss_dssp HHHHHHH-CCTTCEEEEET-TCHHHHSSTTHHHHHTCCEEEEE-CEE-TTEECHHHHHHHSCCSC--TTSCCEEEEEEES
T ss_pred HHHHHHh-cCCCCEEEEcC-cchhhhccccchhhccCeEEEEe-cCC-CCccCHHHHHHHhcccc--ccccCceEEEEec
Confidence 8887776 47899988763 34444322122345579999887 443 46689999988885310 0012589999999
Q ss_pred ccCcc-cchhcHH----HHHHHHHCCcEEEeeccccCCC-CCccCCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 310 QSRVT-GAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-DMDSLGLSL--FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 310 vSNvT-G~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~mipLDLs~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+|+| |+++|++ +++.|+++|+++++|++|..+. .....++.. ..+|.+++|+||++|. |.| |+++.+++
T Consensus 141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-~~G-~~~~~~~~ 218 (347)
T 1jg8_A 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA-PVG-SVVVGDRD 218 (347)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC-SSC-EEEEECHH
T ss_pred cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCC-Cce-EEEEcCHH
Confidence 99999 9999974 3466799999999999874310 000122221 2689999999999997 654 34555555
Q ss_pred Ccccc
Q 002866 382 VMGSL 386 (872)
Q Consensus 382 ~i~~L 386 (872)
.++.+
T Consensus 219 ~~~~~ 223 (347)
T 1jg8_A 219 FIERA 223 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-14 Score=152.01 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+++++.+++++|++ .|+||+|+|+|+.+++.++ .++|+.|++.. ..|.+... .++..|+++..+|.
T Consensus 88 ~~~~~l~~~la~~~g~~----~v~~~~ggt~a~~~~~~~~-~~~gd~V~~~~-p~~~~~~~---~~~~~g~~~~~v~~-- 156 (398)
T 3a2b_A 88 DIHVELEEKLSAYVGKE----AAILFSTGFQSNLGPLSCL-MGRNDYILLDE-RDHASIID---GSRLSFSKVIKYGH-- 156 (398)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHS-SCTTCEEEEET-TCCHHHHH---HHHHSSSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEECC-ccCHHHHH---HHHHcCCceEEeCC--
Confidence 67789999999999973 4999999999999999998 57899988763 34565543 35567999988875
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC-CCccCCCCC-C
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK-DMDSLGLSL-F 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~-~mipLDLs~-l 353 (872)
++.++|++++.... ..++++|.+++.+|.||.++|++ +++.|+++|+++++|.++..+. +.....+.. +
T Consensus 157 ----~d~~~l~~~l~~~~----~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 228 (398)
T 3a2b_A 157 ----NNMEDLRAKLSRLP----EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHF 228 (398)
T ss_dssp ----TCHHHHHHHHHTSC----SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHH
T ss_pred ----CCHHHHHHHHHhhc----cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhc
Confidence 47889998886421 11588999999999999999997 4577899999999999986542 000122211 1
Q ss_pred ----CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 354 ----RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 354 ----~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++|+++.|+||+|| |.| |+++++++.++.+.
T Consensus 229 ~~~~~~di~~~s~sK~~~--~~G-G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 229 GLNDDVDLIMGTFSKSLA--SLG-GFVAGDADVIDFLK 263 (398)
T ss_dssp TCGGGCSEEEEESSSTTC--SSC-EEEEECHHHHHHHH
T ss_pred CCCcCCeEEEeccccccc--CCC-cEEEeCHHHHHHHH
Confidence 37999999999999 778 99999887665553
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=150.65 Aligned_cols=209 Identities=12% Similarity=0.078 Sum_probs=144.9
Q ss_pred CCceecccCCCCCC----cHHHHHHhhhcccccHHHHHHhhccCcCcCCCch----HHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 148 SPKVCLDYCGFGLF----SYIQTLHYWESSTFSLSEITANLSNHALYGGAEK----GTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 148 ~~~IYLDyAAtgp~----p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS----~~~ieeARerIA~lLgA~~dEY~V 219 (872)
++..|+|.++..++ ++.+++++.+ .+. ... ..++.... .....++|++||+++|++ + .
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~-------~~~-~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~---~ 108 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKA-------GMD-SHG--FGMASVRFICGTQDSHKELEQKLAAFLGME-D---A 108 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHH-------HHH-HHC--SCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-E---E
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHH-------HHH-HhC--CCCCCCCcccCCcHHHHHHHHHHHHHhCCC-c---E
Confidence 34678888777654 5777776532 111 110 01111111 256789999999999986 2 5
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
+|+.++|+|+.+++..+ .++|+.|++.. ..|.++.. .++..|+++..++. ++.++|+++|..... ..
T Consensus 109 i~~~sGs~a~~~~~~~~-~~~gd~v~~~~-~~~~~~~~---~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~--~~ 175 (401)
T 1fc4_A 109 ILYSSCFDANGGLFETL-LGAEDAIISDA-LNHASIID---GVRLCKAKRYRYAN------NDMQELEARLKEARE--AG 175 (401)
T ss_dssp EEESCHHHHHHTTHHHH-CCTTCEEEEET-TCCHHHHH---HHHTSCSEEEEECT------TCHHHHHHHHHHHHH--TT
T ss_pred EEeCChHHHHHHHHHHH-cCCCCEEEEcc-hhHHHHHH---HHHHcCCceEEECC------CCHHHHHHHHHHhhc--cC
Confidence 56667788999888776 57888887663 34554433 35667999887762 367899888864211 11
Q ss_pred CCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc--------CCCCCCCCcEEEEcccccCCCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS--------LGLSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip--------LDLs~l~~DFlv~S~HK~fG~~P 370 (872)
.++++|.+++.+|.||.++|++ +++.|+++|+++++|.+++.+.. .+ +++.. ++|+++.|+||+|++ |
T Consensus 176 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~-~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~-~ 252 (401)
T 1fc4_A 176 ARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV-GENGRGSHEYCDVMG-RVDIITGTLGKALGG-A 252 (401)
T ss_dssp CSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS-STTSCCHHHHTTCTT-CCSEEEEESSSTTCS-S
T ss_pred CCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccccc-CCCCCccHHHcCCCc-CCcEEEecchhhccC-C
Confidence 1478999999999999999997 45778999999999999975531 11 55543 689999999999954 5
Q ss_pred CceEEEEEeCCCccccc
Q 002866 371 TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 371 tGvG~LyVRk~~i~~L~ 387 (872)
.| |+++++++.++.+.
T Consensus 253 ~g-G~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 253 SG-GYTAARKEVVEWLR 268 (401)
T ss_dssp SC-EEEEECHHHHHHHH
T ss_pred CC-EEEEcCHHHHHHHH
Confidence 57 99999887766554
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=150.79 Aligned_cols=210 Identities=11% Similarity=0.048 Sum_probs=146.2
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.++||+++..++.++.+++++.+ .+.. ...|+. ....+++|+.+++++| . +..|+||+|+|+
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~-----------~~~~~~~~~~~---~~~~~~l~~~la~~~g-~--~~~v~~~~~gt~ 70 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVK-----------HSSGQAGPYGT---DELTAQVKRKFCEIFE-R--DVEVFLVPTGTA 70 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHH-----------TTSSCCCSTTC---SHHHHHHHHHHHHHHT-S--CCEEEEESCHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHh-----------hccCccccccc---chHHHHHHHHHHHHhC-C--CCcEEEeCCccH
Confidence 47899999888888888887543 1111 012332 2567889999999999 3 235999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHc--CcEEEEEeccCCCCccCHHHHHH-HHhhhhccCCCCCceE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEK--GAKVYSAWFKWPTLKLCSTDLRK-QISSKKRRKKDSAAGL 304 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akrk--GaeV~~Vpvd~p~g~Id~edLe~-~I~~~~rr~~~~~T~L 304 (872)
|+.+++..+ .++|+.|++.. ..|.+.... ..++.. |++++.+|.+ ++.++.++|++ +|..... ...+++++
T Consensus 71 a~~~al~~~-~~~gd~vi~~~-~~~~~~~~~-~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~-~~~~~~~~ 144 (356)
T 1v72_A 71 ANALCLSAM-TPPWGNIYCHP-ASHINNDEC-GAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGD-VHTTQPAC 144 (356)
T ss_dssp HHHHHHHTS-CCTTEEEEECT-TSHHHHSST-THHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTC-TTSCEEEE
T ss_pred HHHHHHHHh-cCCCCEEEEcC-ccchhhhhc-hHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchh-hccCCceE
Confidence 999998886 46888888763 334443211 013334 8999988875 35789999988 7753100 01125889
Q ss_pred EEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccC------CCCCccCCCC--CCCCcEEEEcccccCCCCCCc
Q 002866 305 FVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLG------PKDMDSLGLS--LFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 305 Va~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~a------G~~mipLDLs--~l~~DFlv~S~HK~fG~~PtG 372 (872)
|.+++.+| ||.++|. + +++.|+++|+++++|+++.. +. +.+.- ..++|++++|+||+ |+ |.|
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~~~d~~~~s~sK~-g~-~~G 218 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC---SPAEMTWKAGVDALSFGATKN-GV-LAA 218 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CTTTTTGGGTCCEEEECCGGG-TC-SSC
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC---CHHHhhhhhcCCEEEEecccC-CC-cCc
Confidence 99998776 9996654 4 34677999999999999752 22 22211 13689999999999 77 899
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
.|+++.+++.++.+.
T Consensus 219 ~g~~~~~~~~~~~~~ 233 (356)
T 1v72_A 219 EAIVLFNTSLATEMS 233 (356)
T ss_dssp EEEEESSGGGHHHHH
T ss_pred cEEEEECHHHHhhHH
Confidence 999998887765543
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=157.57 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=127.8
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAK 268 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGae 268 (872)
|+||. ..+.|++||+++|++ ..|+|++| ++|+.+++. + +++|++|++... .|.++. .+...++..|++
T Consensus 64 ~~~p~----~~~l~~~la~~~g~~---~~i~~~sG-~~ai~~~~~-l-~~~gd~Vl~~~~-~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 64 SGNPT----RNCLEKAVAALDGAK---YCLAFASG-LAATVTITH-L-LKAGDQIICMDD-VYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp --CHH----HHHHHHHHHHHHTCS---EEEEESCH-HHHHHHHHT-T-SCTTCEEEEESS-CCHHHHHHHHHTGGGGTCE
T ss_pred CCCch----HHHHHHHHHHHhCCC---cEEEECCH-HHHHHHHHH-H-hCCCCEEEEeCC-CcchHHHHHHHHHHHcCCE
Confidence 45554 468999999999986 24776665 699999998 6 678999887643 455443 344456778999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCC-cEEEeeccccCCCCCc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNH-WHVLLDAGSLGPKDMD 346 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G-~~VLVDAAQ~aG~~mi 346 (872)
++.++.+ +.++|+++|. ++|++|.+...+|.||.++|++. ++.|+++| +++++|.++..+....
T Consensus 133 v~~v~~~------d~~~l~~~i~--------~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 133 ISFVDCS------KIKLLEAAIT--------PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp EEEECTT------SHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred EEEECCC------CHHHHHHhcC--------cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 9998764 5778877764 25899999999999999999984 56789999 9999999998774213
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCce--EEEEEeC-CCcccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGF--GCLLIKK-SVMGSL 386 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGv--G~LyVRk-~~i~~L 386 (872)
+++ +++|+++.|+||+||+ |.|+ |++++++ ++++.|
T Consensus 199 ~~~---~~~div~~S~sK~~~g-~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 199 PLA---LGADISMYSATKYMNG-HSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp TTT---TTCSEEEEETTTTTTC-SSCCCCEEEEECCHHHHHHH
T ss_pred ccc---cCCeEEEEcChhhccC-CCCCeEEEEEECcHHHHHHH
Confidence 554 5899999999999998 7774 9998863 444443
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=154.15 Aligned_cols=162 Identities=10% Similarity=0.064 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++|++||+++|++ +.|+||+| |+|+++++.++..++|++|++.. ..|.++. ..++..|++++.++++.
T Consensus 38 ~~~~~l~~~la~~~~~~---~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~-~~~~~~~---~~~~~~g~~~~~v~~~~ 109 (388)
T 1b9h_A 38 DEVNSFEREFAAHHGAA---HALAVTNG-THALELALQVMGVGPGTEVIVPA-FTFISSS---QAAQRLGAVTVPVDVDA 109 (388)
T ss_dssp SHHHHHHHHHHHHTTCS---EEEEESCH-HHHHHHHHHHTTCCTTCEEEEES-SSCTHHH---HHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCCH-HHHHHHHHHHcCCCCcCEEEECC-CccHHHH---HHHHHcCCEEEEEecCC
Confidence 35678999999999985 24666655 99999999998667899988763 3455554 34566899999999986
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc--CCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS--LGLSLF 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip--LDLs~l 353 (872)
.++.++.++|+++|.. +|++|+ .+|.||.+.|++ +++.|+++|+++++|++|+.|. .. .++..+
T Consensus 110 ~~~~~d~~~l~~~i~~--------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~--~~~~~~~~~~ 176 (388)
T 1b9h_A 110 ATYNLDPEAVAAAVTP--------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGA--RWQGKRVGEL 176 (388)
T ss_dssp TTCCBCHHHHHHHCCT--------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC--EETTEEGGGS
T ss_pred CcCCCCHHHHHHhcCc--------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCC--ccCCeecccc
Confidence 5577899999888742 477777 688999999997 4567899999999999998765 22 345555
Q ss_pred C-CcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 354 R-PDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 354 ~-~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+ ++++++|.||++++ +. .|+++.++.
T Consensus 177 ~~i~~~S~s~~K~l~g-~~-~G~~~~~~~ 203 (388)
T 1b9h_A 177 DSIATFSFQNGKLMTA-GE-GGAVVFPDG 203 (388)
T ss_dssp SSCEEEECCTTSSSCS-SS-CEEEEECTT
T ss_pred cceEEEEccCCCcccC-CC-eEEEEECCH
Confidence 5 77777778899875 54 587777765
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=151.04 Aligned_cols=222 Identities=9% Similarity=0.050 Sum_probs=152.4
Q ss_pred HHHHHhhcccCCCCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC--C
Q 002866 136 IDQLRANEYLHLSPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN--I 212 (872)
Q Consensus 136 ID~lR~~EFP~L~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg--A 212 (872)
++..-.++|. -.+.++|..+... +.|+.+++++.+ ..... ...|+. ...+..+++++.+++++| +
T Consensus 21 ~~d~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~--------~~~~~--~~~y~~-~~~~~~~~l~~~l~~~~g~~~ 88 (391)
T 4dq6_A 21 KWSEMEKKYG-TNDLLPMWVADMDFKAAPCIIDSLKN--------RLEQE--IYGYTT-RPDSYNESIVNWLYRRHNWKI 88 (391)
T ss_dssp HHHCHHHHHS-CSCSEECCSSSCSSCCCHHHHHHHHH--------HHTTC--CCCCBC-CCHHHHHHHHHHHHHHHCCCC
T ss_pred eeeecccccC-CCCceeccccCCCCCCCHHHHHHHHH--------HHhCC--CCCCCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 3433334564 2347888877655 345777776432 11110 112322 225678889999999999 5
Q ss_pred CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc-CCC--CccCHHHHHHH
Q 002866 213 PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK-WPT--LKLCSTDLRKQ 289 (872)
Q Consensus 213 ~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd-~p~--g~Id~edLe~~ 289 (872)
+++ .|+||+|+|+|+++++.++ +++|++|++..- .|.+. ...++..|+++..+|++ +.. ..++.++|+++
T Consensus 89 ~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~-~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~ 161 (391)
T 4dq6_A 89 KSE--WLIYSPGVIPAISLLINEL-TKANDKIMIQEP-VYSPF---NSVVKNNNRELIISPLQKLENGNYIMDYEDIENK 161 (391)
T ss_dssp CGG--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSS-CCTHH---HHHHHHTTCEEEECCCEECTTSCEECCHHHHHHH
T ss_pred cHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCC-CCHHH---HHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHH
Confidence 555 5999999999999999987 578999887632 33333 34556789999999987 322 34789999887
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCCccCCCCCCCCc-----
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLFRPD----- 356 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l~~D----- 356 (872)
|. . +++|++++.+|.||.++|.+ +++.|+++|+++++|.++.. |+ ....+..+.+|
T Consensus 162 l~--------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~ 230 (391)
T 4dq6_A 162 IK--------D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNT 230 (391)
T ss_dssp CT--------T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTE
T ss_pred hh--------c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcE
Confidence 74 2 88999999999999997654 34567999999999999875 32 23445555555
Q ss_pred EEEEcccccCCCCCCceEEEEEeC-CCccccc
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk-~~i~~L~ 387 (872)
+++.|++|+||.+..++|++++++ ++.+.+.
T Consensus 231 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~ 262 (391)
T 4dq6_A 231 ITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLD 262 (391)
T ss_dssp EEEECSHHHHTCGGGCCEEEECCSHHHHHHHH
T ss_pred EEEEechhhccCcccceEEEEeCCHHHHHHHH
Confidence 999999999983123478888776 5555443
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=154.34 Aligned_cols=210 Identities=15% Similarity=0.042 Sum_probs=145.8
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCC--CCCCcEEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIP--ENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~--~dEY~VVF 221 (872)
++++|+.+... +.++.+.+++.+ .+ ... ...|+.+. ...+.|++||+++ |++ ++ ..|+|
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~-~~~--~~~y~~~~---g~~~l~~~la~~~~~~~g~~~~~~-~~v~~ 91 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQD-------AI-AGG--VNQYPPGP---GSAPLRRAIAAQRRRHFGVDYDPE-TEVLV 91 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHH-------HH-HTT--CCSCCCTT---CCHHHHHHHHHHHHHHHCCCCCTT-TSEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHH-------HH-hcC--CCCCCCCC---CCHHHHHHHHHHHHHHcCCCCCCC-ceEEE
Confidence 47899888766 356677776432 12 110 12343321 1245777777776 753 43 15999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC--CCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP--TLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p--~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|+|+|+.+++.++ .++|++|++... .|.++. ..++..|+++..+|++.. ++.++.++|+++|..
T Consensus 92 t~g~~~al~~~~~~~-~~~gd~Vl~~~~-~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------- 159 (411)
T 2o0r_A 92 TVGATEAIAAAVLGL-VEPGSEVLLIEP-FYDSYS---PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP------- 159 (411)
T ss_dssp EEHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT-------
T ss_pred eCCHHHHHHHHHHHh-cCCCCEEEEeCC-CcHhHH---HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc-------
Confidence 999999999999987 578999876532 334443 345668999999998642 345889999887742
Q ss_pred CCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC--CccCCCCC----CCCcEEEEcccccCCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD--MDSLGLSL----FRPDFIITSFYRVFGFD 369 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~--mipLDLs~----l~~DFlv~S~HK~fG~~ 369 (872)
++++|.++..+|.||.++|.+ +++.|+++|+++++|.++..... ..+..+.. .++|+++.|+||+||
T Consensus 160 -~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-- 236 (411)
T 2o0r_A 160 -RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-- 236 (411)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT--
T ss_pred -CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC--
Confidence 588999999999999999963 34677999999999999875310 01122322 468999999999998
Q ss_pred CCc--eEEEEEeCCCccccc
Q 002866 370 PTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 370 PtG--vG~LyVRk~~i~~L~ 387 (872)
+.| +|++++++++++.+.
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~ 256 (411)
T 2o0r_A 237 CTGWKIGWACGPAELIAGVR 256 (411)
T ss_dssp CTTTCEEEEECCHHHHHHHH
T ss_pred CccceEEEEeeCHHHHHHHH
Confidence 458 999998877665543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-14 Score=149.04 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=143.5
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCCCCCCcEEEeC
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIPENEYGLVFTV 223 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~~dEY~VVFTs 223 (872)
.+++|+.+...+ .|+.+.+++.+ .+... ...|+.+. ...+.|+.|++++ |++.+...|+||+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~~---g~~~l~~~la~~~~~~~g~~~~~~~v~~~~ 97 (388)
T 1j32_A 31 DVCSFSAGEPDFNTPKHIVEAAKA-------ALEQG---KTRYGPAA---GEPRLREAIAQKLQRDNGLCYGADNILVTN 97 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CEEECCCCCCCCCCCHHHHHHHHH-------HHhcC---CCCCCCCC---CCHHHHHHHHHHHHHhcCCCCChhhEEEcC
Confidence 367887776543 45667766432 11111 12344321 1235666666666 5432222699999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCCc
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
|+|+|+.+++.++ +++|++|++... .|.++ ...++..|+++..+|.+.. +..++.++|+++|.. ++
T Consensus 98 g~~~a~~~~~~~~-~~~gd~vl~~~~-~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--------~~ 164 (388)
T 1j32_A 98 GGKQSIFNLMLAM-IEPGDEVIIPAP-FWVSY---PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP--------KT 164 (388)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESS-CCTHH---HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT--------TE
T ss_pred CHHHHHHHHHHHh-cCCCCEEEEcCC-CChhH---HHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc--------Cc
Confidence 9999999999987 678999877632 34443 3445668999999998642 346789999887742 58
Q ss_pred eEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCC--CccCCCCC-----CCCcEEEEcccccCCCCCC
Q 002866 303 GLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKD--MDSLGLSL-----FRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~--mipLDLs~-----l~~DFlv~S~HK~fG~~Pt 371 (872)
++|.+++.+|.||.++| ++ +++.|+++|+++++|.++....- .....+.. .+.|+++.|+||+|| +.
T Consensus 165 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~--~~ 242 (388)
T 1j32_A 165 KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA--MT 242 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT--CT
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC--Cc
Confidence 89999999999999987 44 34677999999999999764310 00112222 457999999999998 45
Q ss_pred c--eEEEEEeCCCccccc
Q 002866 372 G--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 372 G--vG~LyVRk~~i~~L~ 387 (872)
| +|++++++++++.+.
T Consensus 243 G~r~G~~~~~~~~~~~l~ 260 (388)
T 1j32_A 243 GWRVGFLAGPVPLVKAAT 260 (388)
T ss_dssp TTCCEEEECCHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHH
Confidence 8 999999887665554
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=151.90 Aligned_cols=203 Identities=9% Similarity=0.103 Sum_probs=138.9
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
+++|+.+...+ .++.+++++.+ .+.....|+.+ ...+.|++||+++|++++ .|+||+|+|+|
T Consensus 26 ~idl~~~~~~~~~~~~v~~a~~~-----------~~~~~~~y~~~----~~~~l~~~la~~~~~~~~--~v~~~~g~~~a 88 (364)
T 1lc5_A 26 LLDFSANINPLGMPVSVKRALID-----------NLDCIERYPDA----DYFHLHQALARHHQVPAS--WILAGNGETES 88 (364)
T ss_dssp SEECSSCCCTTCCCHHHHHHHHH-----------TGGGGGSCCCT----TCHHHHHHHHHHHTSCGG--GEEEESSHHHH
T ss_pred eEEeccccCCCCCCHHHHHHHHH-----------HHHHhhcCCCC----CHHHHHHHHHHHHCcCHH--HEEECCCHHHH
Confidence 67787765432 56677776432 11111234433 246899999999999765 59999999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccC-HHHHHHHHhhhhccCCCCCceEEEE
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLC-STDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id-~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
+.+++..+ +|++|++... .|.. +...++..|+++..+|.+..+ .++ .+++.+.+ ++++++|.+
T Consensus 89 l~~~~~~~---~gd~vl~~~p-~y~~---~~~~~~~~g~~~~~v~~~~~~-~~~~l~~~~~~~--------~~~~~~v~i 152 (364)
T 1lc5_A 89 IFTVASGL---KPRRAMIVTP-GFAE---YGRALAQSGCEIRRWSLREAD-GWQLTDAILEAL--------TPDLDCLFL 152 (364)
T ss_dssp HHHHHHHH---CCSEEEEEES-CCTH---HHHHHHHTTCEEEEEECCGGG-TTCCCTTHHHHC--------CTTCCEEEE
T ss_pred HHHHHHHc---CCCeEEEeCC-CcHH---HHHHHHHcCCeEEEEeCCccc-ccchhHHHHHhc--------cCCCCEEEE
Confidence 99999988 5688776532 2232 334566789999999986421 123 23333322 235789999
Q ss_pred eCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCC--CCccCCC-CCCCCcEEEEcccccCCCCCCc--eEEEE-
Q 002866 308 PVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPK--DMDSLGL-SLFRPDFIITSFYRVFGFDPTG--FGCLL- 377 (872)
Q Consensus 308 p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~--~mipLDL-s~l~~DFlv~S~HK~fG~~PtG--vG~Ly- 377 (872)
++.+|.||.++| ++ +++.|+++|+++++|.++.... ....+++ ...+.|+++.|++|+||. .| +|+++
T Consensus 153 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~r~G~~~~ 230 (364)
T 1lc5_A 153 CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAI--PGLRLGYLVN 230 (364)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTC--TTTCCEEEEC
T ss_pred eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcC--CccceEEEEE
Confidence 999999999999 54 4567899999999999986432 0012332 346789999999999983 36 69999
Q ss_pred EeCCCccccc
Q 002866 378 IKKSVMGSLQ 387 (872)
Q Consensus 378 VRk~~i~~L~ 387 (872)
.+++.++.+.
T Consensus 231 ~~~~~~~~l~ 240 (364)
T 1lc5_A 231 SDDAAMARMR 240 (364)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7777666554
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-15 Score=164.11 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=155.3
Q ss_pred HHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHH-hhccCcCcCCCchHHHHHHHHHHHHHhcCCCCC
Q 002866 137 DQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITA-NLSNHALYGGAEKGTVEHDIKTRIMDHLNIPEN 215 (872)
Q Consensus 137 D~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~-nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~d 215 (872)
.++++ +|+.++..+++|+ ..|++++.+. . ... .......|+.+.. ..+..++++|+++|++.
T Consensus 29 ~~~~~-~~~~~~~i~~~n~-------~~Vl~a~~~~--~----~~~~~~~~~~gy~Y~~~--g~~~Le~~lA~l~g~e~- 91 (427)
T 3hvy_A 29 NDVEK-EFKYYDEIREYNQ-------LKVLKAFQEE--R----ISESHFTNSSGYGYNDI--GRDSLDRVYANIFNTES- 91 (427)
T ss_dssp HHHHH-HHHHHHHHHHHHH-------HHHHHHHHHT--T----CCGGGSCCCCTTCTTCH--HHHHHHHHHHHHHTCSE-
T ss_pred HHHHH-HHHHHHHHHHhhH-------HHHHHHHHHH--H----HHHHhcccCcCCCCCch--hHHHHHHHHHHHhCCCc-
Confidence 34454 6888877888886 5677764321 0 000 0000112222222 36788899999999853
Q ss_pred CCcEEE--eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH--------HHHHHcCcEEEEEeccCCCCccCHHH
Q 002866 216 EYGLVF--TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA--------QSAKEKGAKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 216 EY~VVF--TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~--------~~AkrkGaeV~~Vpvd~p~g~Id~ed 285 (872)
.++| |+|+|+|+.+++.++ +++||+|++.....+.....+. ..++..|++++.++. +++.++.++
T Consensus 92 --alv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~--~~~~~d~e~ 166 (427)
T 3hvy_A 92 --AFVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL--KDGKVDINT 166 (427)
T ss_dssp --EEEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC--BTTBCCHHH
T ss_pred --eEEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC--CCCCcCHHH
Confidence 4776 889999999999887 6899999877412333333332 334567999999887 357899999
Q ss_pred HHHHHhhhhccCCCCCceEEEEeC----ccCcccchhcHH-HHHHHHH--CCcEEEeeccccCCCCCccCCCCCCCCcEE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPV----QSRVTGAKYSYQ-WMALAQQ--NHWHVLLDAGSLGPKDMDSLGLSLFRPDFI 358 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~----vSNvTG~i~PLe-~I~~Are--~G~~VLVDAAQ~aG~~mipLDLs~l~~DFl 358 (872)
|+++|... ++|++|.+.. .+|.||.+.|++ +++.|++ +|+++++|.++..+. .....-..++|++
T Consensus 167 l~~~i~~~------~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~--~~~~p~~~gaDiv 238 (427)
T 3hvy_A 167 VKEELKKD------DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFV--EEKEPTDVGADII 238 (427)
T ss_dssp HHHHHHHC------TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTT--SSSCGGGGTCSEE
T ss_pred HHHHhhCC------CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccc--cCCCCcccCCeEE
Confidence 99999631 2589999999 899999999997 5567898 899999999987664 1122224579999
Q ss_pred EEcccccCCCC--CCceEEEEEeCCCcccccC
Q 002866 359 ITSFYRVFGFD--PTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 359 v~S~HK~fG~~--PtGvG~LyVRk~~i~~L~P 388 (872)
+.|+||++|+. |.| |+++.++++++.+..
T Consensus 239 ~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~ 269 (427)
T 3hvy_A 239 AGSLIKNIGGGIATTG-GYIAGKEEYVTQATF 269 (427)
T ss_dssp EEETTSGGGTTTCCSC-EEEEECHHHHHHHHH
T ss_pred EECCcccccccccceE-EEEEECHHHHHHHHH
Confidence 99999998841 333 889888888777654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=153.98 Aligned_cols=212 Identities=11% Similarity=0.015 Sum_probs=145.9
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhc-cCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLS-NHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLV 220 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~-~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VV 220 (872)
.+|+|+++... +.++.+++++.+ ...... ....|+.+. ...+.|++||+++ |+ +++ ..|+
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~--------~~~~~~~~~~~y~~~~---g~~~l~~~la~~l~~~~g~~~~~~-~~v~ 105 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAA--------AANSPDPLANQYTRGF---GHPRLVQALSKLYSQLVDRTINPM-TEVL 105 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHH--------HHTCSCGGGGSCCCSS---CCHHHHHHHHHHHHHHHTSCCCTT-TSEE
T ss_pred CEEEecCCCCCCCCCHHHHHHHHH--------HHhccccCccCCCCCC---CcHHHHHHHHHHHHHHhCCCCCCc-CCEE
Confidence 47899988765 356777776432 111100 011343321 1246777777775 74 443 1599
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC---------CCccCHHHHHHHHh
Q 002866 221 FTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP---------TLKLCSTDLRKQIS 291 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p---------~g~Id~edLe~~I~ 291 (872)
||+|+|+|+.+++..+ .++|++|++..- .|.... ..++..|+++..+|++.. +..++.++|+++|.
T Consensus 106 ~~~g~~~a~~~~~~~~-~~~gd~Vl~~~p-~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 180 (429)
T 1yiz_A 106 VTVGAYEALYATIQGH-VDEGDEVIIIEP-FFDCYE---PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN 180 (429)
T ss_dssp EESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC
T ss_pred EecChHHHHHHHHHHh-cCCCCEEEEcCC-CchhHH---HHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc
Confidence 9999999999999987 468898876533 223332 345567999999998764 24578999988774
Q ss_pred hhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccC-CCC-CCCCcEEEEc
Q 002866 292 SKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSL-GLS-LFRPDFIITS 361 (872)
Q Consensus 292 ~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipL-DLs-~l~~DFlv~S 361 (872)
+++++|.+++.+|.||.++| ++ +++.|+++|+++++|.++.. |....++ .+. ..++|+++.|
T Consensus 181 --------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 181 --------EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp --------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred --------cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence 25889999999999999997 44 45678999999999999864 2211122 232 3578999999
Q ss_pred ccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 362 FYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 362 ~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
++|+|| +.| +|++++++++++.+.
T Consensus 253 ~sK~~~--~~G~r~G~~~~~~~~~~~l~ 278 (429)
T 1yiz_A 253 AGKTFS--LTGWKIGWAYGPEALLKNLQ 278 (429)
T ss_dssp HHHHHT--CGGGCCEEEESCHHHHHHHH
T ss_pred chhccC--CCCcceEEEEeCHHHHHHHH
Confidence 999998 458 999999877665553
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=149.56 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.|+++++++|++ .++||+|+|+|+.+++.++.+++|++|++.. ..|.++. ..++..|+++..++++
T Consensus 38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~-~~~~~~~---~~~~~~g~~~~~~~~~- 108 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCA-NTFIASV---GAIVQAGATPVLVDSE- 108 (374)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCHHHH---HHHHHTTCEEEEECBC-
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECC-CccHHHH---HHHHHcCCEEEEEecC-
Confidence 45678999999999985 4899999999999999998778899988763 3455443 3456789999999998
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR- 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~- 354 (872)
.++.++.++|++++.. ++++|. .+|.||.+.|++. .+.|+++|+++++|++|..|. .++....+
T Consensus 109 ~~~~~d~~~l~~~~~~--------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~---~~~~~~~~~ 174 (374)
T 3uwc_A 109 NGYVIDPEKIEAAITD--------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILG---RINDKFVGS 174 (374)
T ss_dssp TTSSBCGGGTGGGCCT--------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTS
T ss_pred CCCCcCHHHHHHhCCC--------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCc---eeCCeeccc
Confidence 4677899988876642 477776 6789999999984 567899999999999998875 34544444
Q ss_pred -CcEEEEccc--ccCCCCCCceEEEEEeC
Q 002866 355 -PDFIITSFY--RVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 355 -~DFlv~S~H--K~fG~~PtGvG~LyVRk 380 (872)
+|++++|+| |++|+ +...|+++.++
T Consensus 175 ~~d~~~~s~~~~K~l~~-~g~~g~~~~~~ 202 (374)
T 3uwc_A 175 WGQFACFSLHPLKNLNV-WSDAGVIITHS 202 (374)
T ss_dssp SSSEEEEECSSSSSSCC-SSCCEEEEESC
T ss_pred cccEEEEeCCCCCcCCc-cceeEEEEeCC
Confidence 799999999 99984 23355555554
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=151.08 Aligned_cols=203 Identities=15% Similarity=0.110 Sum_probs=143.4
Q ss_pred CCceecccCC-----CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC-----------
Q 002866 148 SPKVCLDYCG-----FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN----------- 211 (872)
Q Consensus 148 ~~~IYLDyAA-----tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg----------- 211 (872)
..+++|+.+. ..+.++.+++++.+ .+. .. ....|+.+ ....+.|++||++++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~-------~~~-~~-~~~~y~~~---~~~~~lr~~la~~~~~~~~~~~~~~~ 100 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKE-------AID-SQ-ECNGYFPT---VGSPEAREAVATWWRNSFVHKEELKS 100 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHH-------HHH-TT-CSSSCCCT---TCCHHHHHHHHHHHHHHHCCSTTTGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHH-------Hhh-CC-ccCCcCCC---CCCHHHHHHHHHHHHhhhcccccCCC
Confidence 3478999886 34567778777532 111 11 01124332 123578999999998
Q ss_pred -CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHH
Q 002866 212 -IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQ 289 (872)
Q Consensus 212 -A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~ 289 (872)
++++ .|+||+|+|+|+.+++.++ .++|++|++..- .|... ...++..|+++..+|++.. +..++.++|+++
T Consensus 101 ~~~~~--~v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p-~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 173 (416)
T 1bw0_A 101 TIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQP-GFPHY---ETVCKAYGIGMHFYNCRPENDWEADLDEIRRL 173 (416)
T ss_dssp GCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTHH---HHHHHHTTCEEEEEEEEGGGTTEECHHHHHHH
T ss_pred CCCcc--eEEEeCChHHHHHHHHHHh-CCCCCEEEEcCC-CcHhH---HHHHHHcCcEEEEeecCcccCCCCCHHHHHHH
Confidence 6665 5999999999999999987 578999876532 23333 3456678999999998642 245789999887
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CC----CCccCCCCCC---C
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PK----DMDSLGLSLF---R 354 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~----~mipLDLs~l---~ 354 (872)
+.. +++++++++.+|.||.++| ++ +++.|+++|+++++|.++.. |+ . ...+..+ +
T Consensus 174 l~~--------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~--~~~~~~~~~~~ 243 (416)
T 1bw0_A 174 KDD--------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT--FTSVADFETTV 243 (416)
T ss_dssp CCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCC--CCCTTSSCCSC
T ss_pred hcc--------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCC--ccCHHHccCCC
Confidence 742 4789999999999999999 65 45678999999999999765 22 1 1223322 3
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 355 PDFIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
.++++.|++|+||. .| +|++++++.
T Consensus 244 ~~i~~~s~sK~~~~--~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 244 PRVILGGTAKNLVV--PGWRLGWLLYVDP 270 (416)
T ss_dssp CEEEEEESTTTTSC--GGGCCEEEEEECT
T ss_pred cEEEEecchhhCCC--CCceEEEEEeeCc
Confidence 35788999999884 36 899998774
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=154.78 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=143.7
Q ss_pred ceecccCCCC-----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC-----CCCCCCcE
Q 002866 150 KVCLDYCGFG-----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN-----IPENEYGL 219 (872)
Q Consensus 150 ~IYLDyAAtg-----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg-----A~~dEY~V 219 (872)
+|+|+.|... +.++.+++++.+ .+... ....|+.+ ....+.|++||++++ ++++ .|
T Consensus 56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~-------~~~~~--~~~~y~~~---~g~~~lr~~la~~~~~~~~~~~~~--~v 121 (427)
T 3dyd_A 56 MISLSIGDPTVFGNLPTDPEVTQAMKD-------ALDSG--KYNGYAPS---IGFLSSREEIASYYHCPEAPLEAK--DV 121 (427)
T ss_dssp CEECCCSCTTTTSSSCCCHHHHHHHHH-------HHHHC--CSSSCCCT---TCCHHHHHHHHHHHCBTTBCCCGG--GE
T ss_pred EEeCCCcCCCccCCCCCCHHHHHHHHH-------HHhcC--cCCCCCCC---CCcHHHHHHHHHHHhhcCCCCChH--HE
Confidence 6999988854 567788777532 12211 01123322 224589999999999 6665 59
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCC
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~ 298 (872)
+||+|+|+|+.+++..+ .++|++|++..- .+. .+...++..|+++..+|.+. .+..++.++|++.|..
T Consensus 122 ~~t~g~t~al~~~~~~l-~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------ 190 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVL-ANPGQNILVPRP-GFS---LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE------ 190 (427)
T ss_dssp EEESSHHHHHHHHHHHH-CCTTCEEEEEES-CCT---HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT------
T ss_pred EEecCcHHHHHHHHHHh-cCCCCEEEEcCC-Cch---hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc------
Confidence 99999999999999987 368999876532 222 33455677899999998853 2345788888776642
Q ss_pred CCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccCCCCCCCCc---EEEEcccccCC
Q 002866 299 DSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLFRPD---FIITSFYRVFG 367 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l~~D---Flv~S~HK~fG 367 (872)
++++|++++.+|.||.++| ++ +++.|+++|+++++|.++.. +. ....+..+..| +++.|++|.||
T Consensus 191 --~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~~~~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 191 --KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATLSTDVPILSCGGLAKRWL 266 (427)
T ss_dssp --TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGGCSSCCEEEEEESTTTSS
T ss_pred --CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHhCCCCcEEEEeeccccCC
Confidence 5889999999999999999 65 45678999999999999764 32 23344444544 67789999987
Q ss_pred CCCCc--eEEEEEeCC
Q 002866 368 FDPTG--FGCLLIKKS 381 (872)
Q Consensus 368 ~~PtG--vG~LyVRk~ 381 (872)
. .| +|++++++.
T Consensus 267 ~--~G~riG~~~~~~~ 280 (427)
T 3dyd_A 267 V--PGWRLGWILIHDR 280 (427)
T ss_dssp C--GGGCCEEEEEECS
T ss_pred C--cCcceEEEEecCc
Confidence 4 36 799988764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-15 Score=158.07 Aligned_cols=212 Identities=8% Similarity=0.013 Sum_probs=146.2
Q ss_pred CceecccCCCCC---CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 149 PKVCLDYCGFGL---FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 149 ~~IYLDyAAtgp---~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
.+++|+.+...+ .++.+.+++.+ .+.........|+.+ ....+.|++||+++|++++ .|+||+|+
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~-------~~~~~~~~~~~y~~~---~~~~~l~~~la~~~g~~~~--~v~~~~g~ 100 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAAR-------ILREKGEVALQYSPT---EGYAPLRAFVAEWIGVRPE--EVLITTGS 100 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHH-------HHHHHHHHHTSCCCT---TCCHHHHHHHHHHHTSCGG--GEEEESHH
T ss_pred CceecCCCCCCchhCCHHHHHHHHHH-------HHHhcchhhhCCCCC---CCCHHHHHHHHHHhCCChh--hEEEeccH
Confidence 478888776543 34556665432 111110001134432 1235799999999998765 59999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
|+|+.+++.++ .++|++|++..- .|.. +...++..|+++..+|.+. ++ ++.++|+++|... ++++|
T Consensus 101 ~~al~~~~~~~-~~~gd~Vl~~~p-~y~~---~~~~~~~~g~~~~~~~~~~-~~-~d~~~l~~~l~~~-------~~~~v 166 (397)
T 2zyj_A 101 QQALDLVGKVF-LDEGSPVLLEAP-SYMG---AIQAFRLQGPRFLTVPAGE-EG-PDLDALEEVLKRE-------RPRFL 166 (397)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEES-CCHH---HHHHHHTTCCEEEEEEEET-TE-ECHHHHHHHHHHC-------CCSCE
T ss_pred HHHHHHHHHHh-CCCCCEEEEeCC-CcHH---HHHHHHHcCCEEEecCcCC-CC-CCHHHHHHHHhhc-------CCeEE
Confidence 99999999987 468899876532 2333 3344566899999999875 33 8999999988641 36676
Q ss_pred -EEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC--CccCCCCCCCCc------EEEEcccccCCCCCCc
Q 002866 306 -VFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD--MDSLGLSLFRPD------FIITSFYRVFGFDPTG 372 (872)
Q Consensus 306 -a~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~--mipLDLs~l~~D------Flv~S~HK~fG~~PtG 372 (872)
+++..+|.||.++|.+ +++.|+++|+++++|.++..... ..+.++..+++| +++.|+||+||+ -.+
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-G~r 245 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSP-GLR 245 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCG-GGC
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccc-cce
Confidence 6799999999999975 34567899999999999876320 012344444433 899999999982 235
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|++++++++++.+.
T Consensus 246 ~G~~~~~~~~~~~l~ 260 (397)
T 2zyj_A 246 VAFAVAHPEALQKLV 260 (397)
T ss_dssp CEEEECCHHHHHHHH
T ss_pred eEEEecCHHHHHHHH
Confidence 799999877665553
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=146.32 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=144.2
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHh-hccCcCcCCCchHHHHHHHHHHHHHhc----C--CCCCCCcEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITAN-LSNHALYGGAEKGTVEHDIKTRIMDHL----N--IPENEYGLV 220 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~n-L~~~~~ygNpsS~~~ieeARerIA~lL----g--A~~dEY~VV 220 (872)
.++.|..+... +.++.+.+++.+ .+... ......|+.+. ...+.|++|++++ | ++++ .|+
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~~~~~~~~y~~~~---g~~~lr~~la~~l~~~~g~~~~~~--~i~ 103 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKE-------LVTDYDSVALHGYTSAQ---GDVETRAAIAEFLNNTHGTHFNAD--NLY 103 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHH-------HHHHSCHHHHHSCCCTT---CCHHHHHHHHHHHHHHHCCCCCGG--GEE
T ss_pred CeEEeecCCCCCCCCHHHHHHHHH-------HHhcCCccccCCcCCCC---CcHHHHHHHHHHHHHHhCCCCChH--HEE
Confidence 36777766544 345677776432 12110 00001233221 1235666666665 4 5554 699
Q ss_pred EeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 221 FTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
||+|+|+|+.+++..+ +++| ++|++..- .|. .+...++..|+++..+|++..+..++.++|++++..
T Consensus 104 ~~~g~~~al~~~~~~l-~~~g~d~vl~~~p-~~~---~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~------- 171 (398)
T 3ele_A 104 MTMGAAASLSICFRAL-TSDAYDEFITIAP-YFP---EYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA------- 171 (398)
T ss_dssp EESSHHHHHHHHHHHH-CCSTTCEEEEESS-CCT---HHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT-------
T ss_pred EccCHHHHHHHHHHHH-cCCCCCEEEEeCC-Cch---hhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc-------
Confidence 9999999999999988 5789 89886532 233 334456778999999999865567899999887742
Q ss_pred CCceEEEEeCccCcccchhcHHH----HHHHHH------CCcEEEeeccccC----CCCCccCCCCCCCCcEEEEccccc
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQW----MALAQQ------NHWHVLLDAGSLG----PKDMDSLGLSLFRPDFIITSFYRV 365 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe~----I~~Are------~G~~VLVDAAQ~a----G~~mipLDLs~l~~DFlv~S~HK~ 365 (872)
++++|.++..+|.||.++|.+. ++.|++ +|+++++|.++.. |. ..+......+.++++.|++|+
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI-KVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC-CCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC-CcCChHhhcCCeEEEEehhhc
Confidence 5899999999999999999653 356677 8999999999864 32 134444556778999999999
Q ss_pred CCCCCCceEEEEEeCCCcc
Q 002866 366 FGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 366 fG~~PtGvG~LyVRk~~i~ 384 (872)
||.+..++|+++++++.+.
T Consensus 250 ~~~~G~r~G~~~~~~~~~~ 268 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYD 268 (398)
T ss_dssp SSCTTTCCEEEECCTTSTT
T ss_pred CCCccceeEEEEEcchhhh
Confidence 9832345899998887653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=155.99 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=141.8
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLV 220 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VV 220 (872)
.++||+.+...+ .++.+++++ + .+.. ...|+.+ ....+.|++||++++ ++++ .|+
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~-----------~l~~~~~~y~~~---~g~~~l~~~la~~~~~~~g~~~~~~--~v~ 106 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-Y-----------ENKPEVVYYSHS---AGIWELREAFASYYKRRQRVDVKPE--NVL 106 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-H-----------HTCCSSCCCCCT---TCCHHHHHHHHHHHHHTSCCCCCGG--GEE
T ss_pred CEEeccCCCCCCCCCHHHHHHH-H-----------HHhcCCCCCCCC---CCcHHHHHHHHHHHHHHhCCCCCHH--HEE
Confidence 378999888763 556666654 3 1211 1123332 123468888888875 4444 599
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCC
Q 002866 221 FTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
||+|+|+|+.+++.++ +++|++|++... .|.+. ...++..|+++..+|.+. .+..+ .++|+++|.
T Consensus 107 ~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~-~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~-------- 172 (409)
T 2gb3_A 107 VTNGGSEAILFSFAVI-ANPGDEILVLEP-FYANY---NAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN-------- 172 (409)
T ss_dssp EESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTHH---HHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC--------
T ss_pred EeCCHHHHHHHHHHHh-CCCCCEEEEcCC-CchhH---HHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC--------
Confidence 9999999999999987 578999876632 33333 334566799999999864 22333 666666553
Q ss_pred CCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccCCCC---CccCCCCC-CCCcEEEEcccccCCCCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLGPKD---MDSLGLSL-FRPDFIITSFYRVFGFDPT 371 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~aG~~---mipLDLs~-l~~DFlv~S~HK~fG~~Pt 371 (872)
.++++|.+++.+|.||.++|. + +++.|+++|+++++|.++..+.. ..++ +.. .+.|+++.|+||+|| +.
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g--~~ 249 (409)
T 2gb3_A 173 ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFS--AC 249 (409)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTT--CG
T ss_pred cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccC--Cc
Confidence 258899999999999999874 3 34677999999999999875420 1122 333 367999999999998 45
Q ss_pred c--eEEEEEeC-CCccccc
Q 002866 372 G--FGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 372 G--vG~LyVRk-~~i~~L~ 387 (872)
| +|++++++ ++++.+.
T Consensus 250 G~r~G~~~~~~~~l~~~l~ 268 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAM 268 (409)
T ss_dssp GGCCEEEECSCHHHHHHHH
T ss_pred cceEEEEEECcHHHHHHHH
Confidence 7 89999988 6665553
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=162.29 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+++++.+++++|++ .++++.|+|+|+.+++. + +++|++||+... .|.+... +...++..|++++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~-~y~~~~~~~~~~~~~~G~~v~~v~~~- 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDD-VYGGSDRLLSQVVPRSGVVVKRVNTT- 205 (464)
T ss_dssp HHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESS-CCHHHHHHHHHTSGGGTCEEEEECTT-
T ss_pred HHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECC-CchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 5778999999999974 37888888999998886 3 578999887643 3444433 333456679999988753
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++|+++|. ++|++|.+++.+|.||.++|++. ++.|+++|+++++|.+++.|....+++ +++
T Consensus 206 -----d~~~l~~~i~--------~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~~~ 269 (464)
T 1ibj_A 206 -----KLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LGA 269 (464)
T ss_dssp -----SHHHHHHHCC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TTC
T ss_pred -----CHHHHHHHhc--------cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCC
Confidence 5788887774 25899999999999999999984 567899999999999998875211443 589
Q ss_pred cEEEEcccccCCCCCCce--EEEEEeC-CCccccc
Q 002866 356 DFIITSFYRVFGFDPTGF--GCLLIKK-SVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGv--G~LyVRk-~~i~~L~ 387 (872)
|+++.|+||+|++ |.|+ |++++++ .+++.+.
T Consensus 270 div~~S~sK~~~g-~~Gl~~G~l~~~~~~l~~~l~ 303 (464)
T 1ibj_A 270 DIVMHSATKFIAG-HSDVMAGVLAVKGEKLAKEVY 303 (464)
T ss_dssp SEEEEETTTTTTC-SSCCCCEEEEECSHHHHHHHH
T ss_pred EEEEECCcccccC-CCCCcEEEEEEChHHHHHHHH
Confidence 9999999999987 8887 9999986 5655554
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-13 Score=146.44 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.|+.|++++|++ .++|+.++|+|+..++..+ .++|+.|++. +..|.++... ++..|+++..++.
T Consensus 109 ~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~al~~l-~~~gd~vl~~-~~~h~~~~~~---~~~~g~~~~~~~~-- 177 (427)
T 2w8t_A 109 HDHMEVEQALRDFYGTT----GAIVFSTGYMANLGIISTL-AGKGEYVILD-ADSHASIYDG---CQQGNAEIVRFRH-- 177 (427)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCTTCEEEEE-TTCCHHHHHH---HHHSCSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC----ceEEecCcHHHHHHHHHHh-cCCCCEEEEC-CcccHHHHHH---HHHcCCeeEEeCC--
Confidence 56788999999999984 3667777788988887776 5788988776 3456666433 4457898887762
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc--------
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS-------- 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip-------- 347 (872)
++.++|+++|.... ..++++|++.+++|+||.+.|++ +++.|+++|+++++|.++..+. ..
T Consensus 178 ----~d~~~le~~l~~~~----~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~--~~~~g~~~~~ 247 (427)
T 2w8t_A 178 ----NSVEDLDKRLGRLP----KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF--FGPNGRGVYE 247 (427)
T ss_dssp ----TCHHHHHHHHHTSC----SSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SSTTSCCHHH
T ss_pred ----CCHHHHHHHHHhcc----CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHh
Confidence 47899999886421 12589999999999999999997 4567899999999999998764 22
Q ss_pred -CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 348 -LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 348 -LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++.. ++|+++.|+||+|| +.| |+++.++++++.+.+
T Consensus 248 ~~~~~~-~~di~~~s~sK~~g--~~g-G~v~~~~~l~~~l~~ 285 (427)
T 2w8t_A 248 AQGLEG-QIDFVVGTFSKSVG--TVG-GFVVSNHPKFEAVRL 285 (427)
T ss_dssp HTTCTT-CCSEEEEESSSTTC--SCC-EEEEECCTTGGGGGG
T ss_pred hcCCCc-CCcEEEecchhhhc--cCC-CEEEeCHHHHHHHHH
Confidence 55533 78999999999998 567 999999888877653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=143.77 Aligned_cols=205 Identities=10% Similarity=0.010 Sum_probs=140.2
Q ss_pred CCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHH-HHHHHHHhc----C--CCCCCCcE
Q 002866 148 SPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHD-IKTRIMDHL----N--IPENEYGL 219 (872)
Q Consensus 148 ~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~iee-ARerIA~lL----g--A~~dEY~V 219 (872)
+.+++|..+... +.|+.+++++.+ ..... ...|+.+ ..+ .|++||+++ | ++++ .|
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~--------~~~~~--~~~y~~~-----~~~~lr~~la~~l~~~~g~~~~~~--~v 90 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQ--------RLMHG--VFGYSRW-----KNDEFLAAIAHWFSTQHYTAIDSQ--TV 90 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHH--------HHTTC--CCCCCCS-----CCHHHHHHHHHHHHHHSCCCCCGG--GE
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHH--------HHhCC--CCCCCCC-----ChHHHHHHHHHHHHHhcCCCCCHH--HE
Confidence 457888777654 355777776432 11110 1134333 345 788888876 6 5554 59
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC--CccCHHHHHHHHhhhhccC
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT--LKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~--g~Id~edLe~~I~~~~rr~ 297 (872)
+||+|+|+|+.+++.++ .++|++|++..- .|. .+...++..|+++..+|++..+ ..++.++|+++|..
T Consensus 91 ~~t~g~~~al~~~~~~l-~~~gd~vl~~~p-~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----- 160 (390)
T 1d2f_A 91 VYGPSVIYMVSELIRQW-SETGEGVVIHTP-AYD---AFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK----- 160 (390)
T ss_dssp EEESCHHHHHHHHHHHS-SCTTCEEEEEES-CCH---HHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-----
T ss_pred EEcCCHHHHHHHHHHHh-cCCCCEEEEcCC-CcH---HHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-----
Confidence 99999999999999998 468899876532 233 3344566789999999987532 24789999988853
Q ss_pred CCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCC--CccCCCCCCCC---cEEEEcccccCCC
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKD--MDSLGLSLFRP---DFIITSFYRVFGF 368 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~--mipLDLs~l~~---DFlv~S~HK~fG~ 368 (872)
.++++|.++..+|.||.++| ++ +++.|+++|+++++|.++..... ....++..+.+ |. +.|++|+||
T Consensus 161 --~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~- 236 (390)
T 1d2f_A 161 --PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN- 236 (390)
T ss_dssp --TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT-
T ss_pred --CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc-
Confidence 24889999999999999999 44 45678999999999999875210 01334444433 77 999999998
Q ss_pred CCCc--eEEEEEe-CCCcc
Q 002866 369 DPTG--FGCLLIK-KSVMG 384 (872)
Q Consensus 369 ~PtG--vG~LyVR-k~~i~ 384 (872)
+.| +|+++++ +++++
T Consensus 237 -~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 237 -IPALTGAYGIIENSSSRD 254 (390)
T ss_dssp -CGGGCCEEEEECSHHHHH
T ss_pred -ccChhheEEEECCHHHHH
Confidence 346 6999985 34443
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=146.85 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=143.7
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCCCCCC-cEEEeC
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIPENEY-GLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~~dEY-~VVFTs 223 (872)
++.|..+...+ .++.+.+++.+ ..... ....|+. .....+.|++||+++ |++.+.. .|+||+
T Consensus 27 ~idl~~~~~~~~~~~~v~~a~~~--------~~~~~-~~~~y~~---~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~ 94 (376)
T 2dou_A 27 LIDLSIGSTDLPPPEAPLKALAE--------ALNDP-TTYGYCL---KSCTLPFLEEAARWYEGRYGVGLDPRREALALI 94 (376)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHH--------HTTCG-GGSSCCC---HHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEES
T ss_pred EEeccCCCCCCCCCHHHHHHHHH--------HHhCC-CcCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcC
Confidence 67777665543 45667666432 11100 0112332 234678999999998 8752212 599999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCce
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+|+|+.+++.++ .++|++|++..- .|. .+...++..|+++..+|+ ..+..++.++|+++|.. +++
T Consensus 95 g~~~a~~~~~~~l-~~~gd~vl~~~p-~y~---~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~--------~~~ 160 (376)
T 2dou_A 95 GSQEGLAHLLLAL-TEPEDLLLLPEV-AYP---SYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWR--------EAK 160 (376)
T ss_dssp SHHHHHHHHHHHH-CCTTCEEEEESS-CCH---HHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHH--------HEE
T ss_pred CcHHHHHHHHHHh-cCCCCEEEECCC-CcH---hHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhcc--------Cce
Confidence 9999999999987 468899887632 233 334456678999999998 33345788899888853 378
Q ss_pred EEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC---CCc-cCCC-CCCCCcEEEEcccccCCCCCCc--
Q 002866 304 LFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK---DMD-SLGL-SLFRPDFIITSFYRVFGFDPTG-- 372 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~---~mi-pLDL-s~l~~DFlv~S~HK~fG~~PtG-- 372 (872)
+|.+++.+|.||.++|.+ +++.|+++|+++++|.++.... ... .+++ ...+.++++.|++|+||. .|
T Consensus 161 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~r 238 (376)
T 2dou_A 161 VLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNL--AGFR 238 (376)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTC--GGGC
T ss_pred EEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCC--hhhe
Confidence 999998999999999964 3456799999999999986531 001 1222 123568999999999983 46
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|+++.++++++.+.
T Consensus 239 ~G~~~~~~~~~~~l~ 253 (376)
T 2dou_A 239 LGFALGSEEALARLE 253 (376)
T ss_dssp CEEEEECHHHHHHHH
T ss_pred eEEEecCHHHHHHHH
Confidence 799998877665553
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-14 Score=150.77 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....++|++||+++|+ + .|+||+|+|+|+++++.++.+++|++|++.. ..|.++... ++..|++++.++++
T Consensus 32 ~~~~~l~~~la~~~~~--~--~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~-~~~~~~~~~---~~~~g~~~~~v~~~- 102 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKS--E--NALALNSATAALHLALRVAGVKQDDIVLASS-FTFIASVAP---ICYLKAKPVFIDCD- 102 (394)
T ss_dssp HHHHHHHHHHHHHHCC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCGGGTHH---HHHTTCEEEEECBC-
T ss_pred hHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECC-CccHHHHHH---HHHcCCEEEEEEeC-
Confidence 4678999999999998 2 4999999999999999998678899987763 345555332 34479999999998
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC--C-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS--L- 352 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs--~- 352 (872)
.++.++.++|+++|... ..++++|.+++ +||...|++ +.+.|+++|+++++|++|+.|. ...+.. .
T Consensus 103 ~~~~~d~~~l~~~i~~~-----~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~ 172 (394)
T 1o69_A 103 ETYNIDVDLLKLAIKEC-----EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGS--FYKNKALGTF 172 (394)
T ss_dssp TTSSBCHHHHHHHHHHC-----SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSS
T ss_pred CCCCcCHHHHHHHHhcc-----cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccc--eeCCcccccc
Confidence 46789999999988642 11478888875 899999997 4567899999999999998764 222221 1
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEe-CCCccccc
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
..+|++++|.||.++ |.++|+++++ +++++.+.
T Consensus 173 ~~~~~~s~s~~K~l~--~~~~G~~~~~~~~l~~~l~ 206 (394)
T 1o69_A 173 GEFGVYSYNGNKIIT--TSGGGMLIGKNKEKIEKAR 206 (394)
T ss_dssp SSEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHH
T ss_pred cCcEEEEEeCCccCC--CCCceEEEECCHHHHHHHH
Confidence 358999999999988 5689999996 56665554
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=153.93 Aligned_cols=172 Identities=10% Similarity=0.031 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHH-HHHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQ-SAKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~-~AkrkGaeV~~Vpv 274 (872)
...+.+|+.+++++|++++ .|+||+| |+|+.+++.++ +++||+|++..- .|.++.. +.. .....++.+..+++
T Consensus 71 ~~~~~~~~~la~~~g~~~~--~i~~~sG-t~a~~~~~~~~-~~~gd~vl~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (417)
T 3n0l_A 71 EIETLAIERCKKLFNCKFA--NVQPNSG-SQANQGVYAAL-INPGDKILGMDL-SHGGHLTHGAKVSSSGKMYESCFYGV 145 (417)
T ss_dssp HHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH-SCTTCEEEEECC-----------------CCSEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCc--ceEeccH-HHHHHHHHHHh-cCCCCEEEeccc-ccccccchhhhhhhhcceeeeEeccC
Confidence 4555789999999999764 3777766 89999999888 688999886632 3333322 111 12224566777777
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCC---CccCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKD---MDSLGL 350 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~---mipLDL 350 (872)
+ .++.++.++|+++|... ++++|.+.+.+| |++.|++. .+.|+++|+++++|.+|+.|.. ..+..+
T Consensus 146 ~-~~~~~d~~~l~~~i~~~-------~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~ 215 (417)
T 3n0l_A 146 E-LDGRIDYEKVREIAKKE-------KPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF 215 (417)
T ss_dssp C-TTSSCCHHHHHHHHHHH-------CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT
T ss_pred C-CCCCcCHHHHHHHHHhc-------CCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc
Confidence 7 46779999999999732 477888776554 99999974 5678999999999999865420 012233
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEe-CCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
. .+|++++|+||+|++ |.| |+++.+ +++.+.+.
T Consensus 216 ~--~~di~~~s~sK~l~g-~~~-G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 216 P--YAHVVSSTTHKTLRG-PRG-GIIMTNDEELAKKIN 249 (417)
T ss_dssp T--TCSEEEEESSTTTCS-CSC-EEEEESCHHHHHHHH
T ss_pred c--cceEEEeeCccccCC-CCe-eEEEECCHHHHHHHh
Confidence 2 579999999999877 775 999888 46655554
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=151.66 Aligned_cols=206 Identities=11% Similarity=0.153 Sum_probs=140.7
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.+++|+.+.... .|+.+++++.+ .+...-.....|.++. ..+.|++||+++|++++ .|+||+|+|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~~~~~~~y~~~~----~~~lr~~la~~~g~~~~--~i~~t~g~~~ 93 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILE-------ELGPDGAALRIYPSAS----SQKLREVAGELYGFDPS--WIIMANGSDE 93 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHH-------HHTTTCGGGGSCCCSS----CHHHHHHHHHHHTCCGG--GEEEESSHHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHH-------HHhcccchhhcCCCCc----hHHHHHHHHHHhCcCcc--eEEEcCCHHH
Confidence 478999877653 46777776432 1111000011233332 35899999999998776 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF 307 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~ 307 (872)
|+++++.++ +++||+|++..- .|.. +...++..|+++..+|++. ...+ +++ .+ . .+++++++
T Consensus 94 al~~~~~~l-~~~gd~Vl~~~p-~~~~---~~~~~~~~g~~~~~v~~~~-~~~~--~~l----~~----~--~~~~~v~i 155 (360)
T 3hdo_A 94 VLNNLIRAF-AAEGEEIGYVHP-SYSY---YGTLAEVQGARVRTFGLTG-DFRI--AGF----PE----R--YEGKVFFL 155 (360)
T ss_dssp HHHHHHHHH-CCTTCEEEEESS-SCTH---HHHHHHHHTCEEEEECBCT-TSSB--TTC----CS----S--BCSSEEEE
T ss_pred HHHHHHHHH-hCCCCEEEEcCC-ChHH---HHHHHHHCCCEEEEeeCCC-CCCH--HHH----Hh----h--cCCCEEEE
Confidence 999999988 578999887632 2333 3445667899999999865 2333 222 11 1 13569999
Q ss_pred eCccCcccchhcHHH-HHHHHHCCcEEEeeccccC--CCCCccCCC-CCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 308 PVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLG--PKDMDSLGL-SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 308 p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~a--G~~mipLDL-s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
++.+|.||.++|++. .+.|+++|+++++|.++.. +.. .+.+ ...+.++++.|++|+||.+..++|+++++++++
T Consensus 156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 233 (360)
T 3hdo_A 156 TTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESN--ALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVI 233 (360)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCC--CTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHH
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcc--hhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHH
Confidence 999999999999985 5677999999999999763 321 2222 234567899999999983123478888876666
Q ss_pred cccc
Q 002866 384 GSLQ 387 (872)
Q Consensus 384 ~~L~ 387 (872)
+.+.
T Consensus 234 ~~~~ 237 (360)
T 3hdo_A 234 AALD 237 (360)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=151.17 Aligned_cols=209 Identities=12% Similarity=0.097 Sum_probs=143.0
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VVF 221 (872)
+.+.|+.+...+ .|+.+.+++.+ .+... ...|..+. ...+.|+.|++++ |+ +++ .|+|
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~~---g~~~lr~~ia~~~~~~~g~~~~~~--~i~~ 96 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARR-------ALAQG---KTKYAPPA---GIPELREALAEKFRRENGLSVTPE--ETIV 96 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHTTCCCCCGG--GEEE
T ss_pred CEEEecCCCCCCCCCHHHHHHHHH-------HHhcC---CCCCCCCC---CCHHHHHHHHHHHHHHhCCCCChH--HEEE
Confidence 468887776543 45666665432 12111 11233221 1346788888877 43 444 6999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+++++.++ +++||+|++..- .|.. +...++..|++++.+|++. .+..++.++|++++..
T Consensus 97 t~g~~~al~~~~~~l-~~~gd~Vlv~~p-~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------- 163 (385)
T 1b5p_A 97 TVGGSQALFNLFQAI-LDPGDEVIVLSP-YWVS---YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP-------- 163 (385)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTH---HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT--------
T ss_pred cCChHHHHHHHHHHh-cCCCCEEEEcCC-Cchh---HHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC--------
Confidence 999999999999988 578999876532 2333 3445667899999999874 2346788888876642
Q ss_pred CceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccCCCCC-ccCCCCCC--CCcEEEEcccccCCCCCCc-
Q 002866 301 AAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLGPKDM-DSLGLSLF--RPDFIITSFYRVFGFDPTG- 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~aG~~m-ipLDLs~l--~~DFlv~S~HK~fG~~PtG- 372 (872)
++++|.+++.+|.||.++|. + +++.|+++|+++++|.++...... -...+..+ +.++++.|++|+|| +.|
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~--~~G~ 241 (385)
T 1b5p_A 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA--MTGW 241 (385)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT--CGGG
T ss_pred CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC--Cccc
Confidence 58899999999999999984 3 356779999999999997542100 01222223 66899999999998 458
Q ss_pred -eEEEEEeCCCccccc
Q 002866 373 -FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 -vG~LyVRk~~i~~L~ 387 (872)
+|++++++++++.+.
T Consensus 242 RiG~~~~~~~~~~~l~ 257 (385)
T 1b5p_A 242 RIGYACGPKEVIKAMA 257 (385)
T ss_dssp CCEEEECCHHHHHHHH
T ss_pred ceEEEEeCHHHHHHHH
Confidence 899998876655543
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-14 Score=147.86 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....++|+.+++++|++ + .+++.++|+|+.+++..+ +++|+.|++.. ..|.++. ..++..|+++..+|.
T Consensus 88 ~~~~~l~~~la~~~~~~-~---~i~~~sGt~a~~~~l~~~-~~~gd~v~~~~-~~~~~~~---~~~~~~g~~~~~~~~-- 156 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTD-D---TILYSSCFDANGGLFETL-LGPEDAIISDE-LNHASII---DGIRLCKAQRYRYKN-- 156 (399)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESCHHHHHHTTHHHH-CCTTCEEEEET-TCCHHHH---HHHHSCCSEEEEECT--
T ss_pred hHHHHHHHHHHHHHCCC-c---EEEECchHHHHHHHHHHh-cCCCCEEEECC-cccHHHH---HHHHHcCCceeEeCC--
Confidence 56789999999999985 2 444455688998888776 57889888763 3456543 345667999988875
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc------CC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS------LG 349 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip------LD 349 (872)
++.++|+++|.... ....++++|.+++.+|.||.++|++ +++.|+++|+++++|.++..+. .. ++
T Consensus 157 ----~d~~~l~~~l~~~~--~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~~ 228 (399)
T 3tqx_A 157 ----NAMGDLEAKLKEAD--EKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGF--IGENGRGTPE 228 (399)
T ss_dssp ----TCTTHHHHHHHHHH--TTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SSTTSCCHHH
T ss_pred ----CCHHHHHHHHHhhh--ccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHH
Confidence 35678888887532 1112689999999999999999997 5678899999999999986553 11 11
Q ss_pred CCC--CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 350 LSL--FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 350 Ls~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
... .++|+++.|+||+||+ |.| |+++.+++.++.+.
T Consensus 229 ~~~~~~~~di~~~s~sK~~~g-~~g-G~~~~~~~~~~~~~ 266 (399)
T 3tqx_A 229 YCGVADRVDILTGTLGKALGG-ASG-GYTSGHKEIIEWLR 266 (399)
T ss_dssp HHTCTTCCSEEEEESSSSSCS-SCC-EEEEECHHHHHHHH
T ss_pred hhCCCCCCcEEEecchHhccc-Cce-EEEEcCHHHHHHHH
Confidence 111 2679999999999996 678 99998887766554
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=144.14 Aligned_cols=223 Identities=10% Similarity=0.058 Sum_probs=149.6
Q ss_pred CCchhHHHHHhhcccCC-CCceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHH
Q 002866 131 QSSDKIDQLRANEYLHL-SPKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMD 208 (872)
Q Consensus 131 ~~t~~ID~lR~~EFP~L-~~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~ 208 (872)
+.+..++..-.+.|... +.+++|+.+..+. .++.+.+++.+ .+... ...|+.+ ..+.|++||+
T Consensus 13 ~~g~~~~d~~g~~~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~-----~~~l~~~la~ 77 (399)
T 1c7n_A 13 NLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKK-------YLDET---VLGYTGP-----TEEYKKTVKK 77 (399)
T ss_dssp TTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHH-------HHHHC---CCSSBCC-----CHHHHHHHHH
T ss_pred CCCccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHH-------HHhcC---CCCCCCC-----cHHHHHHHHH
Confidence 33444454433335321 3477887776543 45677776432 12111 1234333 3567888887
Q ss_pred hc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC--c
Q 002866 209 HL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL--K 280 (872)
Q Consensus 209 lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g--~ 280 (872)
++ | ++++ .|+||+|+|+|+.+++.++ .++|++|++..- .|.. +...++..|+++..+|.+..++ .
T Consensus 78 ~l~~~~g~~~~~~--~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p-~~~~---~~~~~~~~g~~~~~~~~~~~~g~~~ 150 (399)
T 1c7n_A 78 WMKDRHQWDIQTD--WIINTAGVVPAVFNAVREF-TKPGDGVIIITP-VYYP---FFMAIKNQERKIIECELLEKDGYYT 150 (399)
T ss_dssp HHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSS-CCTH---HHHHHHTTTCEEEECCCEEETTEEE
T ss_pred HHHHHhCCCCChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCC-CcHh---HHHHHHHcCCEEEecccccCCCCEE
Confidence 75 7 5444 5999999999999999987 467899887632 2333 3344566799999888753222 4
Q ss_pred cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccCCCCC
Q 002866 281 LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSL 352 (872)
Q Consensus 281 Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~ 352 (872)
++.++|+++|.. +++++|.+++.+|.||.++| ++ +++.|+++|+++++|.++.. |. ...++..
T Consensus 151 ~d~~~l~~~l~~-------~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~ 221 (399)
T 1c7n_A 151 IDFQKLEKLSKD-------KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQS 221 (399)
T ss_dssp CCHHHHHHHHTC-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred EcHHHHHHHhcc-------CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHH
Confidence 789999998852 25889999999999999999 65 45678999999999999875 32 1234433
Q ss_pred C-----CCcEEEEcccccCCCCCCc--eEEEEEeC-CCcccc
Q 002866 353 F-----RPDFIITSFYRVFGFDPTG--FGCLLIKK-SVMGSL 386 (872)
Q Consensus 353 l-----~~DFlv~S~HK~fG~~PtG--vG~LyVRk-~~i~~L 386 (872)
+ +.++++.|++|+||. .| +|++++++ ++++.+
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~--~G~r~G~~~~~~~~~~~~l 261 (399)
T 1c7n_A 222 IDEQLADKTITFTAPSKTFNI--AGMGMSNIIIKNPDIRERF 261 (399)
T ss_dssp SCHHHHTTEEEEECSHHHHTC--GGGCCEEEECCCHHHHHHH
T ss_pred cCccccCcEEEEEeChhhccc--cchheEEEEECCHHHHHHH
Confidence 3 457899999999983 46 79999864 344433
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=158.95 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec--
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-- 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-- 274 (872)
..+.++|+.+|+ +|++ + .++||+|+|+|+.+++.++ +++|++|++... .|.++... +...|++++.++.
T Consensus 57 ~~~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~-~h~s~~~~---~~~~G~~~~~v~~~~ 127 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSF-SQKKGDILMARN-VHKSVLHA---LDISQQEGHFIETHQ 127 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTT-TTSSSCEEECTT-CCHHHHHH---HHHHTCCEEECEEEE
T ss_pred hHHHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEEecC-ccHHHHHH---HHHcCCeEEEEeCee
Confidence 456889999999 9986 2 6999999999999999987 578999887743 56666433 2336899998887
Q ss_pred cCCC---CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCC---CCcc
Q 002866 275 KWPT---LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPK---DMDS 347 (872)
Q Consensus 275 d~p~---g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~---~mip 347 (872)
+... +.++.++| +. +++++|.+++ .|.+|.++|++ +++.|+++|+++++|+++.... .. +
T Consensus 128 ~~~~~~~~~~d~~~l---~~--------~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~ 194 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NN--------DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-P 194 (446)
T ss_dssp CTTTSSEEEEEC------------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-C
T ss_pred ccccCcCCCCCHHHH---cC--------CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-C
Confidence 4211 34666666 22 2578999999 66699999998 4578899999999999987611 00 4
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
+++...++|++++|+||++++ |.|+|+|+++++.++
T Consensus 195 ~~~~~~g~Di~~~S~~K~l~~-~~g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 195 DSTLNYQADYVVQSFHKTLPA-LTMGSVLYIHKNAPY 230 (446)
T ss_dssp CCGGGGTCSEEEECHHHHSSS-CTTCEEEEEETTCTT
T ss_pred CChHHcCCCEEEECCcccccc-ccccEEEEEcCCcCC
Confidence 555567899999999997666 889999999988654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=149.91 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=138.2
Q ss_pred CCceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|+|.++..+ .++.+++++.+ .+.........| +. ....+.|++|++++|+ ++ .|+|
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~-------~~~~~~~~~~~y--~~--~~~~~l~~~la~~~g~-~~--~v~~ 91 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKE-------QVEKLLHVSNLY--EN--PWQEELAHKLVKHFWT-EG--KVFF 91 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHH-------HHHHCSCCCTTB--CC--HHHHHHHHHHHHTSSS-CE--EEEE
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHH-------HHHhccccCccc--CC--HHHHHHHHHHHhhcCC-CC--eEEE
Confidence 3468999986643 56777776532 121110000123 22 3456889999999998 33 5999
Q ss_pred eCCHHHHHHHHHhhC-CC----CCC-CeEEEecccCchhHHHHHHHHHH----cCcE-----EEEEeccCCCCccCHHHH
Q 002866 222 TVSRGSAFKLLAESY-PF----HTN-KKLLTMFDYESQSVNWMAQSAKE----KGAK-----VYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 222 TsnATeALnLVaesl-pf----~~G-d~ILT~~DhEHnSVl~~~~~Akr----kGae-----V~~Vpvd~p~g~Id~edL 286 (872)
|+|+|+|+.+++... .+ ++| ++|++....-|.....+...... .|.. +..++. .+.++|
T Consensus 92 ~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l 165 (375)
T 2eh6_A 92 ANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL------NDIDSV 165 (375)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT------TCHHHH
T ss_pred eCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC------chHHHH
Confidence 999999999987642 11 467 88876543224444433221100 1222 444332 367777
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCCCccCCCCCCC--CcEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKDMDSLGLSLFR--PDFI 358 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~l~--~DFl 358 (872)
+++|. +++++|.+.+.+|.||.++| ++ +++.|+++|+++++|.++. .+.....+++..++ +|++
T Consensus 166 ~~~l~--------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 166 YKLLD--------EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp HTTCC--------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred HHHhc--------CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 76653 25899999999999999988 86 4567899999999999987 54310124455555 9999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++| |+||+ +.++|+++++++.++.+.+
T Consensus 238 s~S--K~~~~-g~~~G~~~~~~~~~~~~~~ 264 (375)
T 2eh6_A 238 ALA--KGLGG-GVPIGAILAREEVAQSFTP 264 (375)
T ss_dssp EEC--GGGGT-TSCCEEEEEEHHHHTTCCT
T ss_pred EEc--ccccC-CCCeEEEEEcHHHHhhhcC
Confidence 888 88886 7889999999887776664
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=139.60 Aligned_cols=205 Identities=8% Similarity=0.041 Sum_probs=128.5
Q ss_pred CceecccCCCC------CCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGFG------LFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg------p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||+++.. ..++.+++++.+ ..... .++. .......+++++++++++| ++ .|+|
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~--------~~~~~----~~~~~~~~~~~~~~l~~~la~~~g--~~--~v~~ 98 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALID--------QANRV----TLTSRAFHSDQLGPWYEKVAKLTN--KE--MVLP 98 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHH--------HHTTC----SCCCTTSEETTHHHHHHHHHHHHT--CS--EEEE
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHH--------HHHhc----cccccccCCHHHHHHHHHHHHhcC--CC--EEEE
Confidence 46799988643 246777776432 11111 1111 1112456789999999998 33 4999
Q ss_pred eCCHHHHHHHHHhhCC-C--------CCCCeEEEecccCchhHHHHHHHHHHcC---------cEEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAESYP-F--------HTNKKLLTMFDYESQSVNWMAQSAKEKG---------AKVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaeslp-f--------~~Gd~ILT~~DhEHnSVl~~~~~AkrkG---------aeV~~Vpvd~p~g~Id~ 283 (872)
|+|+|+|+.+++..+. . ..+++|++.....|.............+ ..+..++.+ +.
T Consensus 99 ~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~ 172 (392)
T 3ruy_A 99 MNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG------DL 172 (392)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT------CH
T ss_pred eCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc------cH
Confidence 9999999998876532 1 1255777654323343333222111000 123433321 67
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
++|+++|. +++++|.+.+.+|.||.++| ++ +.+.|+++|+++++|.+|. .+.. ...++.....+
T Consensus 173 ~~l~~~l~--------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 244 (392)
T 3ruy_A 173 EALKAAIT--------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTP 244 (392)
T ss_dssp HHHHHHCC--------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHhc--------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCC
Confidence 88888774 25899999999999999999 87 4567899999999999985 3210 12334444568
Q ss_pred cEEEEcccccCCCCC-CceEEEEEeCCCcccc
Q 002866 356 DFIITSFYRVFGFDP-TGFGCLLIKKSVMGSL 386 (872)
Q Consensus 356 DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L 386 (872)
|++++| |.+++ - ..+|+++++++.++.+
T Consensus 245 d~~~~S--K~l~g-G~~~~G~~~~~~~~~~~~ 273 (392)
T 3ruy_A 245 DMYILG--KALGG-GVFPISCAAANRDILGVF 273 (392)
T ss_dssp SEEEEC--GGGGT-TTSCCEEEEECHHHHTTC
T ss_pred CEEEEc--hhhhC-ChhhhEEEEECHHHHhhh
Confidence 999887 98763 1 2389998877655443
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=147.37 Aligned_cols=202 Identities=8% Similarity=-0.027 Sum_probs=139.8
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEEe
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVFT 222 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVFT 222 (872)
++.|..+... +.++.+++++.+ .+.... ..|+. . . .+.|+.||++++ ++++ .|+||
T Consensus 25 ~idl~~~~~~~~~~~~v~~a~~~-------~~~~~~---~~y~~-~-~---~~lr~~la~~~~~~~~~~~~~~--~i~~t 87 (377)
T 3fdb_A 25 VLPLWVAESDFSTCPAVLQAITD-------AVQREA---FGYQP-D-G---SLLSQATAEFYADRYGYQARPE--WIFPI 87 (377)
T ss_dssp SEECCSSCCCSCCCHHHHHHHHH-------HHHTTC---CSSCC-S-S---CCHHHHHHHHHHHHHCCCCCGG--GEEEE
T ss_pred eeeecccCCCCCCCHHHHHHHHH-------HHHcCC---CCCCC-C-C---HHHHHHHHHHHHHHhCCCCCHH--HEEEe
Confidence 6777766543 356777776432 121111 12332 1 1 468888888888 7665 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+|+|+++++.++ .++|++|++... .|... ...++..|+++..+|++.. ++.++|+++|.. ++
T Consensus 88 ~g~~~a~~~~~~~~-~~~gd~vl~~~~-~~~~~---~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~--------~~ 151 (377)
T 3fdb_A 88 PDVVRGLYIAIDHF-TPAQSKVIVPTP-AYPPF---FHLLSATQREGIFIDATGG---INLHDVEKGFQA--------GA 151 (377)
T ss_dssp SCHHHHHHHHHHHH-SCTTCCEEEEES-CCTHH---HHHHHHHTCCEEEEECTTS---CCHHHHHHHHHT--------TC
T ss_pred CChHHHHHHHHHHh-cCCCCEEEEcCC-CcHhH---HHHHHHcCCEEEEccCCCC---CCHHHHHHHhcc--------CC
Confidence 99999999999987 478899876532 23333 3445667999999999863 899999999864 37
Q ss_pred eEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccC----C-CCCccCCCCC---CCCcEEEEcccccCCCCC
Q 002866 303 GLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLG----P-KDMDSLGLSL---FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~a----G-~~mipLDLs~---l~~DFlv~S~HK~fG~~P 370 (872)
+++++++.+|.||.++|.+. ++.|+++|+++++|.++.. | + ...++.. .+.++++.|++|+||.+.
T Consensus 152 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 152 RSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSDTAASVCITITAPSKAWNIAG 229 (377)
T ss_dssp CEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCHHHHHHEEEEECSTTTTTCGG
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHccCCCcEEEEEeChHhccCcc
Confidence 89999999999999998753 3457899999999999865 2 2 1223322 344599999999997311
Q ss_pred CceEEEEE-eCCCcccc
Q 002866 371 TGFGCLLI-KKSVMGSL 386 (872)
Q Consensus 371 tGvG~LyV-Rk~~i~~L 386 (872)
..+|++++ ++.+++.+
T Consensus 230 ~r~G~~~~~~~~~~~~~ 246 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHW 246 (377)
T ss_dssp GCCEEEECCSHHHHHHH
T ss_pred hhheEEEeCCHHHHHHH
Confidence 23787776 44444444
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=152.75 Aligned_cols=192 Identities=16% Similarity=0.100 Sum_probs=135.6
Q ss_pred ceecccCCC---CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 150 KVCLDYCGF---GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAt---gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
.|| |+++. +++|+.+++++. .|++|+ ...+.+++.+++++|+++.+ .++||+|+|
T Consensus 29 ~v~-~~~~~~~~~~~~~~v~~a~~------------------~~~~~~--~~~~~~~~~~a~~~g~~~~~-~~~~~~ggt 86 (374)
T 2aeu_A 29 ALY-DLSGLSGGFLIDEKDKALLN------------------TYIGSS--YFAEKVNEYGLKHLGGDEND-KCVGFNRTS 86 (374)
T ss_dssp GCE-ECSSCCCCCCCCHHHHHHHT------------------STTHHH--HHHHHHHHHHHHHHTCCTTE-EEEEESSHH
T ss_pred cee-eecccCCCCCCCHHHHHHHH------------------HhcCch--HHHHHHHHHHHHHhCCCCcc-eEEEEcChH
Confidence 477 87764 578888887631 234443 23356777778899995322 599999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE-E
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL-F 305 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L-V 305 (872)
+|+.+++.++ +||+|++..-..|. ...+...++..|++++.+ .+.++|+++ . +++++ |
T Consensus 87 ~a~~~~~~~~---~gd~Vl~~~~~y~~-~~~~~~~~~~~g~~~~~v--------~d~~~l~~~-~--------~~~~~~v 145 (374)
T 2aeu_A 87 SAILATILAL---KPKKVIHYLPELPG-HPSIERSCKIVNAKYFES--------DKVGEILNK-I--------DKDTLVI 145 (374)
T ss_dssp HHHHHHHHHH---CCSEEEEECSSSSC-CTHHHHHHHHTTCEEEEE--------SCHHHHHTT-C--------CTTEEEE
T ss_pred HHHHHHHHhC---CCCEEEEecCCCCc-cHHHHHHHHHcCcEEEEe--------CCHHHHHhc-C--------CCccEEE
Confidence 9999999887 79998765431112 112223566789998876 256666554 2 35899 9
Q ss_pred EEeCccCccc-chhcHH-HHHHHHHCCcEEEeeccccCCCCCccC-C--CCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 306 VFPVQSRVTG-AKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL-G--LSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 306 a~p~vSNvTG-~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL-D--Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
.+++.+|.|| .+.|++ +++.|+++|+++++|.++..+.. .+. . .-.+++|++++|+||++++ | ++|+++.++
T Consensus 146 ~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~di~~~S~sK~l~g-~-~~G~~~~~~ 222 (374)
T 2aeu_A 146 ITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVR-LLFNQPPALKLGADLVVTSTDKLMEG-P-RGGLLAGKK 222 (374)
T ss_dssp EECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH-HHTTCCCHHHHTCSEEEEETTSSSSS-C-SCEEEEEEH
T ss_pred EEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccc-cccccCCccccCCcEEEecCcccccC-c-ceEEEEECH
Confidence 9999999999 899997 45678999999999998754320 011 1 1124789999999999886 5 899999998
Q ss_pred CCccccc
Q 002866 381 SVMGSLQ 387 (872)
Q Consensus 381 ~~i~~L~ 387 (872)
+.++.+.
T Consensus 223 ~~~~~l~ 229 (374)
T 2aeu_A 223 ELVDKIY 229 (374)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=149.28 Aligned_cols=200 Identities=13% Similarity=0.025 Sum_probs=141.6
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
.-|+|.+...+ +++.+++++.+ .+ .. ..|+. .....++|++||+++|++ .++||+|+|+|
T Consensus 30 ~~~id~~~~~~~~~~~v~~a~~~-------~~-~~----~~y~~---~~~~~~l~~~la~~~~~~----~~v~~~~Gt~a 90 (399)
T 2oga_A 30 VPFLDLKAAYEELRAETDAAIAR-------VL-DS----GRYLL---GPELEGFEAEFAAYCETD----HAVGVNSGMDA 90 (399)
T ss_dssp BCSCCHHHHHHHTHHHHHHHHHH-------HH-HH----TCCSS---SHHHHHHHHHHHHHTTSS----EEEEESCHHHH
T ss_pred CcccccCcCCCCCCHHHHHHHHH-------HH-hc----CCCCC---chhHHHHHHHHHHHHCCC----eEEEecCHHHH
Confidence 35777765544 45667666432 11 11 12332 145678999999999985 38899999999
Q ss_pred HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 229 FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 229 LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
+.+++.++.+++|++|++.. ..|.++. ..++..|++++.++++..++.++.++|+++|.. ++++|.
T Consensus 91 ~~~~l~~~~~~~gd~vl~~~-~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~--------~~~~v~-- 156 (399)
T 2oga_A 91 LQLALRGLGIGPGDEVIVPS-HTYIASW---LAVSATGATPVPVEPHEDHPTLDPLLVEKAITP--------RTRALL-- 156 (399)
T ss_dssp HHHHHHHTTCCTTCEEEEES-SSCTHHH---HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT--------TEEEEC--
T ss_pred HHHHHHHhCCCCcCEEEECC-CccHHHH---HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC--------CCeEEE--
Confidence 99999998678899987763 2344433 345668999999998754567899999888752 477776
Q ss_pred CccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC--CcEEEEccc--ccCCCCCCceEEEEEe-CCC
Q 002866 309 VQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR--PDFIITSFY--RVFGFDPTGFGCLLIK-KSV 382 (872)
Q Consensus 309 ~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~--~DFlv~S~H--K~fG~~PtGvG~LyVR-k~~ 382 (872)
.+|.||.+.|++ +.+.|+++|+++++|+++..+. ..+...++ +|++++|+| |+||. |-..|+++.+ +++
T Consensus 157 -~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~---~~~~~~~~~~~di~~~S~~~sK~~~~-~G~~g~~~~~~~~~ 231 (399)
T 2oga_A 157 -PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGA---RYRGRRIGAGSSVAAFSFYPGKNLGC-FGDGGAVVTGDPEL 231 (399)
T ss_dssp -CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTC---EETTEETTCTTCEEEEECCTTSSSCC-SSCCEEEEESCHHH
T ss_pred -EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccC---ccCCeecccccCEEEEeCCCCccCCc-CCceEEEEeCCHHH
Confidence 368999999997 4567899999999999998774 12333344 799999996 99984 2225556555 455
Q ss_pred ccccc
Q 002866 383 MGSLQ 387 (872)
Q Consensus 383 i~~L~ 387 (872)
++.++
T Consensus 232 ~~~l~ 236 (399)
T 2oga_A 232 AERLR 236 (399)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55454
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=147.62 Aligned_cols=198 Identities=12% Similarity=0.198 Sum_probs=140.2
Q ss_pred CCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC---CCCCCCcEEEeC
Q 002866 148 SPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN---IPENEYGLVFTV 223 (872)
Q Consensus 148 ~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg---A~~dEY~VVFTs 223 (872)
..++|||++... +.|+.+++++.+. +... ....|+.+ ...+.|++||++++ ++++ .|+||+
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------~~~~--~~~~y~~~----~~~~lr~~la~~~~~~~~~~~--~v~~~~ 83 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRR-------LNSD--ALRIYYDS----PDEELIEKILSYLDTDFLSKN--NVSVGN 83 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHT-------CCGG--GGGSCCCS----SCHHHHHHHHHHHTCSSCCGG--GEEEES
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHH-------hhhh--hhhcCCCC----chHHHHHHHHHHcCCCCCCHH--HEEEcC
Confidence 358999999885 4678888775431 1000 01123322 25689999999999 8765 599999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCce
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+|+|+++++.++ |++|++. - .+.. +...++..|+++..+|.+. ++.++.++| ++++
T Consensus 84 G~~~al~~~~~~~----gd~Vl~~-p-~y~~---~~~~~~~~g~~~~~v~~~~-~~~~d~~~l-------------~~~~ 140 (335)
T 1uu1_A 84 GADEIIYVMMLMF----DRSVFFP-P-TYSC---YRIFAKAVGAKFLEVPLTK-DLRIPEVNV-------------GEGD 140 (335)
T ss_dssp SHHHHHHHHHHHS----SEEEECS-S-SCHH---HHHHHHHHTCEEEECCCCT-TSCCCCCCC-------------CTTE
T ss_pred ChHHHHHHHHHHh----CCcEEEC-C-CcHH---HHHHHHHcCCeEEEeccCC-CCCCCHHHc-------------CCCC
Confidence 9999999999998 7888765 3 2332 3345566799999988864 345565544 1478
Q ss_pred EEEEeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCC-CCCccCC-CCCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 002866 304 LFVFPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGP-KDMDSLG-LSLFRPDFIITSFYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG-~~mipLD-Ls~l~~DFlv~S~HK~fG~~PtG--vG~LyV 378 (872)
+|.+++.+|.||.++|.+.+. .++..| ++++|.++... .. -.++ +...+.++++.|++|+|| +.| +|++++
T Consensus 141 ~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~ 216 (335)
T 1uu1_A 141 VVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFS--LAAQRVGYVVA 216 (335)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTT--CGGGCCEEEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcC--CcccCeEEEEe
Confidence 999899999999999998654 456568 89999998621 10 0133 234567899999999998 447 799999
Q ss_pred eCCCccccc
Q 002866 379 KKSVMGSLQ 387 (872)
Q Consensus 379 Rk~~i~~L~ 387 (872)
+++.++.+.
T Consensus 217 ~~~~~~~l~ 225 (335)
T 1uu1_A 217 SEKFIDAYN 225 (335)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 887766554
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=146.60 Aligned_cols=179 Identities=14% Similarity=0.163 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhc----CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 199 EHDIKTRIMDHL----NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 199 ieeARerIA~lL----gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
..+.|++||+++ |++.+...|+||+|+|+|+.+++.++ .++|++|++... .|. .+...++..|+++..+|.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~v~~ 151 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL-IDPGDVVITENP-SYI---NTLLAFEQLGAKIEGVPV 151 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEES-CCH---HHHHHHHTTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh-cCCCCEEEEeCC-ChH---HHHHHHHHcCCEEEEccc
Confidence 357888999888 84322236999999999999999988 578999876532 222 334456678999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEE-EEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC--Ccc
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLF-VFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD--MDS 347 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LV-a~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~--mip 347 (872)
+. ++ ++.++|+++|..... ...++++| +++..+|.||.++|++ +++.|+++|+++++|.++....- ...
T Consensus 152 ~~-~~-~d~~~l~~~l~~~~~--~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 227 (407)
T 2zc0_A 152 DN-DG-MRVDLLEEKIKELKA--KGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDI 227 (407)
T ss_dssp ET-TE-ECHHHHHHHHHHHHH--TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSC
T ss_pred CC-CC-CCHHHHHHHHHhhhc--ccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCC
Confidence 75 34 899999998862100 01257776 6889999999999995 34567899999999999875320 011
Q ss_pred CCCCCC---CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 LGLSLF---RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDLs~l---~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..+..+ +.++++.|++|+||+ -..+|++++++++++.+.
T Consensus 228 ~~~~~~~~~~~~i~~~s~sK~~~~-G~r~G~~~~~~~~~~~~~ 269 (407)
T 2zc0_A 228 VPLKALDNEGRVIVAGTLSKVLGT-GFRIGWIIAEGEILKKVL 269 (407)
T ss_dssp CCGGGGCSSCCEEEEEESTTTTCT-TSCCEEEECCHHHHHHHH
T ss_pred CChhhcCCCCCEEEEcccccccCC-CcceEEEecCHHHHHHHH
Confidence 223322 456899999999983 223899998877665554
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=156.67 Aligned_cols=175 Identities=11% Similarity=0.003 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEE--eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-------HHHHHcCcE
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVF--TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-------QSAKEKGAK 268 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVF--TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-------~~AkrkGae 268 (872)
..+..++++|+++|++. .++| |+|+|+|+.+++.++ +++||+|++.....|.....+. ..+++.|++
T Consensus 60 ~~~~Le~~lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~ 135 (409)
T 3jzl_A 60 GRDTLERVYATVFKTEA---ALVRPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIG 135 (409)
T ss_dssp HHHHHHHHHHHHHTCSE---EEEETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCE
T ss_pred HHHHHHHHHHHHhCCCc---EEEECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCE
Confidence 36678889999999853 4776 899999999998887 5889999876412344444333 345667999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC----ccCcccchhcHH-HHHHHHH--CCcEEEeeccccC
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV----QSRVTGAKYSYQ-WMALAQQ--NHWHVLLDAGSLG 341 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~----vSNvTG~i~PLe-~I~~Are--~G~~VLVDAAQ~a 341 (872)
++.++.++ ++.++.++|+++|.. +|++|.+.. .+|.||.+.|++ +++.|++ +|+++++|.++..
T Consensus 136 ~~~v~~~~-~g~~d~e~l~~ai~~--------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~ 206 (409)
T 3jzl_A 136 YSSVPLLE-NGDVDFPRIAKKMTP--------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206 (409)
T ss_dssp EEECCCCT-TSCCCHHHHHHHCCT--------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred EEEeCCCC-CCCcCHHHHHHhccC--------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 99999875 578999999988752 589999999 999999999997 4567899 9999999999876
Q ss_pred CCCCccCCCCCCCCcEEEEcccccCCCCCC--ceEEEEEeCCCcccccC
Q 002866 342 PKDMDSLGLSLFRPDFIITSFYRVFGFDPT--GFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 342 G~~mipLDLs~l~~DFlv~S~HK~fG~~Pt--GvG~LyVRk~~i~~L~P 388 (872)
+. ...+....++|+++.|+||++|+ +. ..|+++.++++++.+..
T Consensus 207 ~~--~~~~p~~~g~Div~~S~sK~lgg-~~~~~GG~v~~~~~li~~l~~ 252 (409)
T 3jzl_A 207 FV--EYQEPPEVGADIIAGSLIKNPGG-GLAKTGGYIAGKEALVDLCGY 252 (409)
T ss_dssp TT--SSCCSGGGTCSEEEEETTSGGGT-TTCSSCEEEEECHHHHHHHHH
T ss_pred cc--ccCCccccCCeEEEECccccCCc-cCCceEEEEEeCHHHHHHHHH
Confidence 64 12233456899999999999885 21 13888888887776654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-14 Score=150.84 Aligned_cols=211 Identities=10% Similarity=0.007 Sum_probs=139.5
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VVF 221 (872)
.+++|..+...+ .++.+++++.+. +.. .. ...|+.+ ....+.|+.||+++ |+ +++ ..|+|
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~-------~~~-~~-~~~y~~~---~g~~~l~~~ia~~~~~~~g~~~~~~-~~v~~ 104 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTV-------AQR-ED-THGYSTS---RGIPRLRRAISHWYRDRYDVQIDPE-SEAIV 104 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHT-------C-----------CT---TCCHHHHHHHHHHHHHHHCCCCCTT-TSEEE
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHH-------HhC-CC-CCCCCCC---CCcHHHHHHHHHHHHHHhCCCCCCC-cCEEE
Confidence 367777765543 456676664331 100 00 0123321 12357888999988 85 441 25999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+.+++.++ .++|++|++..- .|... ...++..|+++..+|++.. +..++.++|++++. +
T Consensus 105 t~g~~~a~~~~~~~~-~~~gd~Vl~~~p-~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~--------~ 171 (412)
T 2x5d_A 105 TIGSKEGLAHLMLAT-LDHGDTILVPNP-SYPIH---IYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI--------P 171 (412)
T ss_dssp ESCHHHHHHHHHHHH-CCTTCEEEEEES-CCHHH---HHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE--------S
T ss_pred cCChHHHHHHHHHHh-CCCCCEEEEcCC-CchhH---HHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc--------c
Confidence 999999999999987 578999876632 33433 3345567999999998753 22256677766653 2
Q ss_pred CceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC--CCccCCCCC----CCCcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK--DMDSLGLSL----FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~--~mipLDLs~----l~~DFlv~S~HK~fG~~P 370 (872)
++++|.+++.+|.||.++|.+ +++.|+++|+++++|.++.... .....++.. .+.|+++.|++|+|| +
T Consensus 172 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~--~ 249 (412)
T 2x5d_A 172 KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN--M 249 (412)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS--C
T ss_pred CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC--C
Confidence 578899999999999999964 3456789999999999987632 001223333 367899999999998 3
Q ss_pred Cc--eEEEEEeCCCccccc
Q 002866 371 TG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 371 tG--vG~LyVRk~~i~~L~ 387 (872)
.| +|++++++++++.+.
T Consensus 250 ~G~r~G~~~~~~~~~~~l~ 268 (412)
T 2x5d_A 250 AGWRIGFMVGNPELVSALA 268 (412)
T ss_dssp TTSCCEEEEECHHHHHHHH
T ss_pred cccceEEEEcCHHHHHHHH
Confidence 46 799999877766554
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=152.19 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=138.0
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|.++. ++.|+.+++++.+ .+. .. ..+.+.......+++|+++++++|++++ .|+||
T Consensus 44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~-------~~~-~~---~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~ 110 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGHGNPEVVEAVKR-------QAE-TL---MAMPQTLPTPMRGEFYRTLTAILPPELN--RVFPV 110 (395)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHH-------HHH-HC---CCCCTTSCCHHHHHHHHHHHHTSCTTEE--EEEEE
T ss_pred CCEEEEccCccccccCCCCCHHHHHHHHH-------HHH-hC---CCCccccCCHHHHHHHHHHHHhcCCCcC--EEEEc
Confidence 4678998654 5567778877533 121 11 1111101135678999999999998665 59999
Q ss_pred CCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcE------------EEEEeccCCCCccCHHHHHHH
Q 002866 223 VSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK------------VYSAWFKWPTLKLCSTDLRKQ 289 (872)
Q Consensus 223 snATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae------------V~~Vpvd~p~g~Id~edLe~~ 289 (872)
+|+|+|+.+++..+ .+.+|++||+.....|..+..+... .|.+ +..++. .+.++|+++
T Consensus 111 ~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~ 181 (395)
T 1vef_A 111 NSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSV---TWEPKYREPFLPLVEPVEFIPY------NDVEALKRA 181 (395)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHT---CCCHHHHGGGCSCSSCEEEECT------TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhh---cCCcccccccCCCCCCeeEeCC------CcHHHHHHH
Confidence 99999999988764 2346788776543234444433221 2332 333332 367888877
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEEEEc
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITS 361 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S 361 (872)
|.. ++++|.+.+.+|.||.++| ++ +++.|+++|+++++|.++. .+.. ..++++....+|++ |
T Consensus 182 i~~--------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s 251 (395)
T 1vef_A 182 VDE--------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--T 251 (395)
T ss_dssp CCT--------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred hcc--------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--E
Confidence 742 5889999999999999998 87 4567899999999999987 3210 01223334568977 6
Q ss_pred ccccCCCCCCceEEEEEeCCCccccc
Q 002866 362 FYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 362 ~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++|+||+ +.++|++++++++++.+.
T Consensus 252 ~sK~~~~-g~~~G~~~~~~~~~~~l~ 276 (395)
T 1vef_A 252 LAKALGG-GVPLGVAVMREEVARSMP 276 (395)
T ss_dssp ECGGGGT-TSSCEEEEEEHHHHHTSC
T ss_pred EcccccC-CCceEEEEehHHHHhhhc
Confidence 7999987 678999999988666554
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=147.59 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
....+.|++||+++|++ .++||+|+|+|+.+++.++.+++|++|++.. ..|.++. ..++..|++++.++++.
T Consensus 39 ~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~-~~~~~~~---~~~~~~g~~~~~v~~~~ 110 (393)
T 1mdo_A 39 PKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPS-MTWVSTL---NMIVLLGANPVMVDVDR 110 (393)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCHHHH---HHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCEEEeCC-CccHhHH---HHHHHCCCEEEEEeccC
Confidence 46778999999999984 4999999999999999998678899988763 3455543 34566899999999986
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR- 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~- 354 (872)
.++.++.++|+++|.. ++++|.++ |.||.+.|++ +.+.|+++|+++++|++|+.|. .. +...++
T Consensus 111 ~~~~~d~~~l~~~l~~--------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~~~~~~~ 176 (393)
T 1mdo_A 111 DTLMVTPEHIEAAITP--------QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGT--SY-KGRHIGA 176 (393)
T ss_dssp TTCCBCHHHHHHHCCT--------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC--EE-TTEETTS
T ss_pred CcCCCCHHHHHHhcCC--------CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCC--eE-CCeecCC
Confidence 4567899999888752 47887764 5899999997 4567899999999999998764 11 222345
Q ss_pred CcEEEEccc--ccCCCCCCceEEEEEe-CCCcccccC
Q 002866 355 PDFIITSFY--RVFGFDPTGFGCLLIK-KSVMGSLQN 388 (872)
Q Consensus 355 ~DFlv~S~H--K~fG~~PtGvG~LyVR-k~~i~~L~P 388 (872)
+|++++|+| |++++ + ..|+++.+ ++.++.+.+
T Consensus 177 ~d~~~~S~~k~K~l~~-~-~~g~~~~~~~~~~~~l~~ 211 (393)
T 1mdo_A 177 RGTAIFSFHAIKNITC-A-EGGIVVTDNPQFADKLRS 211 (393)
T ss_dssp SSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCCCCcccc-c-cceEEEeCCHHHHHHHHH
Confidence 899999999 99874 3 45677765 456665543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-14 Score=158.51 Aligned_cols=201 Identities=11% Similarity=0.051 Sum_probs=126.2
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCC-cEEEeCCH
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEY-GLVFTVSR 225 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY-~VVFTsnA 225 (872)
++-.++|+.|++++.. .+.+....|+|.+ ..+.+.+|+++++++|++.+++ ..||+.++
T Consensus 61 as~n~~~~~V~eA~~~-----------~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sG 129 (490)
T 2a7v_A 61 ASENFCSRAALEALGS-----------CLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG 129 (490)
T ss_dssp TTCCCCCHHHHHHHTS-----------GGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred CCCCCCCHHHHHHHHH-----------HHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCch
Confidence 5666678999998543 1111111245542 2444589999999999987654 45788899
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHH--HH-H--HHHHHcCcE--EEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVN--WM-A--QSAKEKGAK--VYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl--~~-~--~~AkrkGae--V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+..+..++ .++||+|++.. .+|.+.. +. . ..+...|.. +..++++..++.+|.++|++++...
T Consensus 130 t~An~~al~al-~~pGD~Vl~~~-~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~----- 202 (490)
T 2a7v_A 130 SPANLAVYTAL-LQPHDRIMGLD-LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF----- 202 (490)
T ss_dssp HHHHHHHHHHH-CCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHH-cCCCCEecccC-ccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc-----
Confidence 99999999887 58999987553 2333221 11 0 011123433 3444455556889999999998642
Q ss_pred CCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC---CCccCCCCCCCCcEEEEcccccCCCCCCceE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK---DMDSLGLSLFRPDFIITSFYRVFGFDPTGFG 374 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~---~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG 374 (872)
+++|+++...+ +|...|++. .+.|+++|+++++|+||++|. ...+..+. ++|++++|+||.|++ |.| |
T Consensus 203 --~~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~G-p~G-G 274 (490)
T 2a7v_A 203 --RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRG-ARS-G 274 (490)
T ss_dssp --CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCS-CSC-E
T ss_pred --CCcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcc-ccc-h
Confidence 36788775443 467889985 567899999999999986442 00122232 689999999998877 888 9
Q ss_pred EEEEeCCC
Q 002866 375 CLLIKKSV 382 (872)
Q Consensus 375 ~LyVRk~~ 382 (872)
+++.+++.
T Consensus 275 ~i~~~~~~ 282 (490)
T 2a7v_A 275 LIFYRKGV 282 (490)
T ss_dssp EEEEECSE
T ss_pred heeeccch
Confidence 99988864
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=156.57 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEE--eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH--------HHHHHcCcE
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVF--TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA--------QSAKEKGAK 268 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVF--TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~--------~~AkrkGae 268 (872)
.+..++++|+++|++. .++| |+|+|+|+.+++.++ +++||+|++.....|.....+. ..++..|++
T Consensus 75 ~~~Le~~lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 150 (427)
T 3i16_A 75 RDSLDAVYARVFNTES---ALVRPHFVNGTHALGAALFGN-LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGIN 150 (427)
T ss_dssp HHHHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHH-CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCE
T ss_pred HHHHHHHHHHHhCCcc---eEEeCCCccHHHHHHHHHHHH-hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCE
Confidence 6678889999999953 4777 899999999998887 5789999877413344444333 345667999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC----ccCcccchhcHH-HHHHHHH--CCcEEEeeccccC
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV----QSRVTGAKYSYQ-WMALAQQ--NHWHVLLDAGSLG 341 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~----vSNvTG~i~PLe-~I~~Are--~G~~VLVDAAQ~a 341 (872)
++.++.+. ++.++.++|+++|.. .++|+||.+.. .+|.||.+.|++ +++.|++ +|+++++|.++..
T Consensus 151 ~~~v~~~~-~g~~D~e~l~~~l~~------~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~ 223 (427)
T 3i16_A 151 YKQVDLKE-DGKPNLEEIEKVLKE------DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGE 223 (427)
T ss_dssp EEECCCCT-TSSCCHHHHHHHHHT------CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred EEEecCcc-CCCcCHHHHHHHhhC------CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 99999875 578999999999862 12589999999 899999999997 4567899 9999999999877
Q ss_pred CCCCccCCCCCCCCcEEEEcccccCCCCC--CceEEEEEeCCCcccccC
Q 002866 342 PKDMDSLGLSLFRPDFIITSFYRVFGFDP--TGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 342 G~~mipLDLs~l~~DFlv~S~HK~fG~~P--tGvG~LyVRk~~i~~L~P 388 (872)
+. ...+.-..++|+++.|+||+||+ + ...|+++.++++++.+..
T Consensus 224 ~~--~~~~p~~~gaDiv~~S~sK~lgg-~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 224 FM--DTKEPTDVGADLIAGSLIKNIGG-GIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp TS--SSSCGGGGTCSEEEEETTSGGGT-TTCCSCEEEEECHHHHHHHHH
T ss_pred cc--ccCCccccCCeEEEecCcccCCC-CCCceEEEEEECHHHHHHHHH
Confidence 64 12223346899999999999984 1 234999999888877754
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=145.42 Aligned_cols=207 Identities=12% Similarity=0.058 Sum_probs=137.4
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
.+++|+.+...+ .|+.+++++.+ .+... ...|+.+ ....+.|++|+++++ ++++ .|+|
T Consensus 32 ~~i~l~~g~~~~~~~~~v~~a~~~-------~~~~~---~~~y~~~---~g~~~lr~~ia~~~~~~~g~~~~~~--~v~~ 96 (391)
T 3h14_A 32 RIIHMEVGQPGTGAPRGAVEALAK-------SLETD---ALGYTVA---LGLPALRQRIARLYGEWYGVDLDPG--RVVI 96 (391)
T ss_dssp CCEECCCSSCSSCSCHHHHHHHHH-------HHC----------------CCHHHHHHHHHHHHHHHCCCCCGG--GEEE
T ss_pred CeEEccCCCCCCCCCHHHHHHHHH-------HHhcC---CCCCCCC---CChHHHHHHHHHHHHHHhCCCCCHH--HEEE
Confidence 478888776554 35667776432 11110 0123322 123578888888874 5555 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC-CccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT-LKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~-g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+++++.++ .++|++|++... .|. .+...++..|+++..+|++..+ ..++.++|+++
T Consensus 97 t~g~~~al~~~~~~l-~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~----------- 160 (391)
T 3h14_A 97 TPGSSGGFLLAFTAL-FDSGDRVGIGAP-GYP---SYRQILRALGLVPVDLPTAPENRLQPVPADFAGL----------- 160 (391)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEEES-CCH---HHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-----------
T ss_pred ecChHHHHHHHHHHh-cCCCCEEEEcCC-CCc---cHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc-----------
Confidence 999999999999987 478999886532 233 3345567789999999987432 24677776532
Q ss_pred CceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC-CccCCCCC-CCCcEEEEcccccCCCCCCceE
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD-MDSLGLSL-FRPDFIITSFYRVFGFDPTGFG 374 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~-mipLDLs~-l~~DFlv~S~HK~fG~~PtGvG 374 (872)
++++|.+++.+|.||+++|.+ +++.|+++|+++++|.++..... -.+..+.. .+.++++.|++|+||.+..++|
T Consensus 161 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 240 (391)
T 3h14_A 161 DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVG 240 (391)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCE
T ss_pred CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeE
Confidence 478999999999999999953 34567999999999999863210 00222222 3566888999999983134478
Q ss_pred EEEEeCCCcccc
Q 002866 375 CLLIKKSVMGSL 386 (872)
Q Consensus 375 ~LyVRk~~i~~L 386 (872)
+++++++.++.+
T Consensus 241 ~~~~~~~~~~~~ 252 (391)
T 3h14_A 241 WMVVPEDQVRVV 252 (391)
T ss_dssp EEECCGGGHHHH
T ss_pred EEEeCHHHHHHH
Confidence 888877766554
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=149.84 Aligned_cols=169 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCC-CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTN-KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~G-d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
..++|++||+++|++++ .|+||+|+|+|+++++.++ .++| ++|++..- .+... ...++..|+++..+|.+.
T Consensus 60 ~~~lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p-~~~~~---~~~~~~~g~~~~~v~~~~- 131 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPP-TYGMY---SVSAETIGVECRTVPTLD- 131 (356)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSS-SCTHH---HHHHHHHTCEEEECCCCT-
T ss_pred HHHHHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCC-ChHHH---HHHHHHcCCEEEEeeCCC-
Confidence 46899999999999875 5999999999999999987 4688 88887632 23333 344566799999998874
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCCCCcc-CCC-C
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPKDMDS-LGL-S 351 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~~mip-LDL-s 351 (872)
+..++.++|++++. ++++|.+++.+|.||.++|.+.+ +.|+ +|+++++|.++.......+ +++ .
T Consensus 132 ~~~~d~~~l~~~i~---------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~ 201 (356)
T 1fg7_A 132 NWQLDLQGISDKLD---------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLA 201 (356)
T ss_dssp TSCCCHHHHHTSCT---------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTT
T ss_pred CCCCCHHHHHHHhc---------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHh
Confidence 45678887766552 48899999999999999998644 3345 8999999999763220011 232 3
Q ss_pred CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
..+.++++.|++|+|| +.| +|++++++++++.+.
T Consensus 202 ~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~ 237 (356)
T 1fg7_A 202 EYPHLAILRTLSKAFA--LAGLRCGFTLANEEVINLLM 237 (356)
T ss_dssp TCTTEEEEEESSSTTC--CGGGCCEEEEECHHHHHHHH
T ss_pred hCCCEEEEecchHhhc--CchhhhEEEEeCHHHHHHHH
Confidence 4567899999999998 457 799999887766554
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=150.07 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=143.4
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCCCCC-CcEEEeC
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIPENE-YGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~~dE-Y~VVFTs 223 (872)
++.|+.+...+ .++.+++++.+. . .. ..+ ..|+.+. ...+.|++||+++ |++.+. ..|+||+
T Consensus 49 ~idl~~g~~~~~~~~~v~~a~~~~--~--~~--~~~---~~y~~~~---g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~ 116 (404)
T 2o1b_A 49 LINMAVGIPDGPTPQGIIDHFQKA--L--TI--PEN---QKYGAFH---GKEAFKQAIVDFYQRQYNVTLDKEDEVCILY 116 (404)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHH--T--TC--HHH---HSCCCTT---CCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred EEecCCcCCCCCCCHHHHHHHHHH--H--hC--CCC---CCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence 67777665543 456676664321 0 00 001 1244321 2357888888888 875221 2699999
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCce
Q 002866 224 SRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG 303 (872)
Q Consensus 224 nATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~ 303 (872)
|+|+|+.+++.++ .++|++|++..- .|... ...++..|+++..+|.+..+..++.++|++++.. +++
T Consensus 117 G~~~al~~~~~~l-~~~gd~Vl~~~p-~y~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--------~~~ 183 (404)
T 2o1b_A 117 GTKNGLVAVPTCV-INPGDYVLLPDP-GYTDY---LAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID--------KTK 183 (404)
T ss_dssp SHHHHHHHHHHHH-CCTTCEEEEEES-CCSSH---HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH--------HEE
T ss_pred CcHHHHHHHHHHh-cCCCCEEEEcCC-CchhH---HHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc--------Cce
Confidence 9999999999987 467899876532 23333 3345668999999998753335788999888853 378
Q ss_pred EEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC-CccCCCCCC----CCcEEEEcccccCCCCCCc--
Q 002866 304 LFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD-MDSLGLSLF----RPDFIITSFYRVFGFDPTG-- 372 (872)
Q Consensus 304 LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~-mipLDLs~l----~~DFlv~S~HK~fG~~PtG-- 372 (872)
+|.+++.+|.||.++|.+ +++.|+++|+++++|.++..... -.+.++..+ +.|+++.|++|+||. .|
T Consensus 184 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~--~G~r 261 (404)
T 2o1b_A 184 LIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNM--SGFR 261 (404)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTC--GGGC
T ss_pred EEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccC--chhh
Confidence 999999999999999864 34667899999999999865320 012233222 568999999999983 36
Q ss_pred eEEEEEeCCCccccc
Q 002866 373 FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 373 vG~LyVRk~~i~~L~ 387 (872)
+|+++.++++++.+.
T Consensus 262 ~G~~~~~~~~~~~l~ 276 (404)
T 2o1b_A 262 VGFAVGNKDMIQALK 276 (404)
T ss_dssp CEEEEECHHHHHHHH
T ss_pred eEeEecCHHHHHHHH
Confidence 799998877666553
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=147.78 Aligned_cols=211 Identities=12% Similarity=0.034 Sum_probs=143.5
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
+.|+|+++.... .|+.+++++.+ ..... ....|+.+. ...+.|+.||++++ +++++ .|+|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~--------~~~~~-~~~~y~~~~---g~~~l~~~la~~~~~~~~~~~~~~~-~i~~ 90 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSK--------AAFID-NMNQYTRGF---GHPALVKALSCLYGKIYQRQIDPNE-EILV 90 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHH--------HHTCG-GGGSCCCTT---CCHHHHHHHHHHHHHHHTSCCCTTT-SEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHH--------HHhCc-cccCCCCCC---ChHHHHHHHHHHHHHHhCCCCCCCC-CEEE
Confidence 489999998763 56777776432 11110 011344332 13467888888877 65522 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC----------CCCccCHHHHHHHHh
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW----------PTLKLCSTDLRKQIS 291 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~----------p~g~Id~edLe~~I~ 291 (872)
|+|+|+|+.+++..+ .++|++|++... .|... ...++..|+++..++++. .+..++.++|++++.
T Consensus 91 ~~g~~~a~~~~~~~~-~~~gd~vl~~~p-~~~~~---~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 91 AVGAYGSLFNSIQGL-VDPGDEVIIMVP-FYDCY---EPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTH---HHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred eCCcHHHHHHHHHHh-cCCCCEEEEeCC-Cchhh---HHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 999999999999987 578998876532 23333 334566899999998862 234578888877663
Q ss_pred hhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccCCCCCC----CCcEEE
Q 002866 292 SKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLF----RPDFII 359 (872)
Q Consensus 292 ~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l----~~DFlv 359 (872)
+++++|.++..+|.||.++| ++ +++.|+++|+++++|.++.. |+ ....+..+ +.++++
T Consensus 166 --------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 166 --------SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGMWERTITI 235 (410)
T ss_dssp --------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEE
T ss_pred --------CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCccCeEEEE
Confidence 25899999999999999975 44 34567999999999999863 32 12233322 345899
Q ss_pred EcccccCCCCCCceEEEEEeCCCccccc
Q 002866 360 TSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 360 ~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.|++|.||.+..++|+++.+++.++.+.
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~ 263 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQ 263 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHHHHH
Confidence 9999999831123899988877665543
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=145.85 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=141.6
Q ss_pred CCceecccCCC---CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCC
Q 002866 148 SPKVCLDYCGF---GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVS 224 (872)
Q Consensus 148 ~~~IYLDyAAt---gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsn 224 (872)
.+..|||+.+. .++++.+++++.. ....|++. ....+.|++||+++|++ .++||+|
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~--------------~~~~y~~~---~~~~~l~~~la~~~~~~----~~~~~~~ 98 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMM--------------GDEAYAGS---ENFYHLERTVQELFGFK----HIVPTHQ 98 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTT--------------CCCCSSSC---HHHHHHHHHHHHHHCCS----EEEEESS
T ss_pred cccceeeeccccCCccCCHHHHHHhhc--------------chhhcccC---hhHHHHHHHHHHHhCCC----cEEEeCC
Confidence 34789998543 3567777776421 01234422 34678999999999974 4999999
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC---------CCccCHHHHHHHHhhhhc
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP---------TLKLCSTDLRKQISSKKR 295 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p---------~g~Id~edLe~~I~~~~r 295 (872)
+|+|+.+++.++ +++|| |+....| |.++. ..++..|+++..++++.. ++.++.++|+++|...++
T Consensus 99 gt~a~~~al~~l-~~~gd-i~~~~~~-~~~~~---~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~ 172 (456)
T 2ez2_A 99 GRGAENLLSQLA-IKPGQ-YVAGNMY-FTTTR---YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA 172 (456)
T ss_dssp HHHHHHHHHHHH-CCTTC-EEEESSC-CHHHH---HHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred cHHHHHHHHHHh-CCCCC-Eeccccc-cchhH---HHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc
Confidence 999999999887 67899 6655443 35543 234567999999988621 256899999999975310
Q ss_pred cCCCCCceEEEEeCccC-cccchhc---HH-HHHHHHHCCcEEEeeccccCC---------CCCccCCCC------CCCC
Q 002866 296 RKKDSAAGLFVFPVQSR-VTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGP---------KDMDSLGLS------LFRP 355 (872)
Q Consensus 296 r~~~~~T~LVa~p~vSN-vTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG---------~~mipLDLs------~l~~ 355 (872)
...++|.+...+| .||..+| ++ +++.|+++|+++++|.+|..| .......+. ...+
T Consensus 173 ----~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 248 (456)
T 2ez2_A 173 ----ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYA 248 (456)
T ss_dssp ----GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC
T ss_pred ----cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccC
Confidence 1248888887777 9999998 65 456789999999999998764 100111110 1247
Q ss_pred cEEEEcccccCCCCCCceEEEEEe-CCCcccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIK-KSVMGSL 386 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L 386 (872)
|++++|+||+++. | ..|+++.+ +++++.+
T Consensus 249 d~~~~S~kk~~~~-~-~gG~~~~~~~~~~~~~ 278 (456)
T 2ez2_A 249 DGCTMSGKKDCLV-N-IGGFLCMNDDEMFSSA 278 (456)
T ss_dssp SEEEEETTTTTCC-S-SCEEEEESCHHHHHHH
T ss_pred CEEEEeCcccCCC-C-ceeEEEECCHHHHHHH
Confidence 9999999999775 4 36888774 4555444
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=151.94 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=139.1
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSA 228 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeA 228 (872)
+..|||+.+..+. +.+.+++.+ .+. . ....|+++ ....+.|++|++++|.+ .|+||+|+|+|
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~-------~~~-~--~~~~y~~~---~~~~~l~~~la~~~~~~----~v~~t~ggt~A 103 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWA-------AMI-T--GDEAYAGS---RNYYDLKDKAKELFNYD----YIIPAHQGRGA 103 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHH-------HHH-T--CCCCSSSC---HHHHHHHHHHHHHHCCC----EEEEESSHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHH-------HHh-h--cccccccC---ccHHHHHHHHHHHcCCC----cEEEcCCcHHH
Confidence 3689999888765 223332211 111 1 11245543 24567899999999972 49999999999
Q ss_pred HHHHHhhCCCC----CCCe---EEEecccCchhHHHHHHHHHHcCcEEEEEeccC---------CCCccCHHHHHHHHhh
Q 002866 229 FKLLAESYPFH----TNKK---LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW---------PTLKLCSTDLRKQISS 292 (872)
Q Consensus 229 LnLVaeslpf~----~Gd~---ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~---------p~g~Id~edLe~~I~~ 292 (872)
+.+++..+ .+ +|++ |++. ..++.... ......|+++..++... .++.++.++|+++|..
T Consensus 104 ~~~al~~~-~~~~~~~Gd~~~~viv~-~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~ 178 (467)
T 1ax4_A 104 ENILFPVL-LKYKQKEGKAKNPVFIS-NFHFDTTA---AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 178 (467)
T ss_dssp HHHHHHHH-HHHHHHTTCCSSCEEEE-SSCCHHHH---HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhccCCCccceEEEe-ccccchhh---HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHh
Confidence 99988876 34 7888 7776 43334332 23345688887665421 1356899999999974
Q ss_pred hhccCCCCCceEEEEeCccCcc-cchhcHH----HHHHHHHCCcEEEeeccccC-----------CCCCccCCCCCC---
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVT-GAKYSYQ----WMALAQQNHWHVLLDAGSLG-----------PKDMDSLGLSLF--- 353 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe----~I~~Are~G~~VLVDAAQ~a-----------G~~mipLDLs~l--- 353 (872)
.. ..+|++|.+...+|.+ |.++|.+ +++.|+++|+++++|++|+. ++ ..+++..+
T Consensus 179 ~~----~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 252 (467)
T 1ax4_A 179 HG----ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY--KNATIKEVIFD 252 (467)
T ss_dssp HC----GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG--TTCCHHHHHHH
T ss_pred cC----CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhcccccccc--CCCchhhhhhh
Confidence 21 1258999999999999 8887764 34678999999999998765 33 23333322
Q ss_pred ---CCcEEEEcccccCCCCCCceEEEEEe-C-CCcccc
Q 002866 354 ---RPDFIITSFYRVFGFDPTGFGCLLIK-K-SVMGSL 386 (872)
Q Consensus 354 ---~~DFlv~S~HK~fG~~PtGvG~LyVR-k-~~i~~L 386 (872)
.+|++++|+||+||. |.| |+++.+ + ++++.+
T Consensus 253 ~~~~~d~~~~s~sK~~g~-~~G-g~~~~~d~~~l~~~~ 288 (467)
T 1ax4_A 253 MYKYADALTMSAKKDPLL-NIG-GLVAIRDNEEIFTLA 288 (467)
T ss_dssp HGGGCSEEEEETTSTTCC-SSC-EEEEESSCHHHHHHH
T ss_pred hccccceEEEeccccCCC-Ccc-eEEEeCCHHHHHHHH
Confidence 479999999999996 655 666666 4 555444
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=141.00 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC------CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY------PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl------pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
....++|++||+++|++ .++||+|+|+|+++++.++ .+++|++|++.. .+|.++.. .++..|++++
T Consensus 34 ~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~-~~~~~~~~---~~~~~g~~~~ 105 (390)
T 3b8x_A 34 EYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPA-VSWSTTYY---PLQQYGLRVK 105 (390)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEES-SSCHHHHH---HHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECC-CCcHHHHH---HHHHcCCEEE
Confidence 46789999999999985 3899999999999999988 467899988763 45555543 2345799999
Q ss_pred EEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCC
Q 002866 271 SAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLG 349 (872)
Q Consensus 271 ~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLD 349 (872)
.++++..++.++.++|+++|.. +|++|.++ |.+|...|++. .+.|+++|+++++|++|+.|. .. +
T Consensus 106 ~~~~~~~~~~~d~~~l~~~i~~--------~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~ 171 (390)
T 3b8x_A 106 FVDIDINTLNIDIESLKEAVTD--------STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGA--TF-N 171 (390)
T ss_dssp EECBCTTTCSBCHHHHHHHCCT--------TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTC--EE-T
T ss_pred EEecCccccCcCHHHHHHHhCc--------CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccC--EE-C
Confidence 9999865578899999988853 48888886 47899999984 567899999999999999886 23 5
Q ss_pred CCCCCC--cEEEEc---ccccCCCCCCceEEEEEeC-CCccccc
Q 002866 350 LSLFRP--DFIITS---FYRVFGFDPTGFGCLLIKK-SVMGSLQ 387 (872)
Q Consensus 350 Ls~l~~--DFlv~S---~HK~fG~~PtGvG~LyVRk-~~i~~L~ 387 (872)
...+++ |+.++| +||+.+ |.| |+++.++ .+.+.++
T Consensus 172 ~~~~g~~~~~~~~s~~~~k~~~~--g~g-G~~~~~~~~l~~~~~ 212 (390)
T 3b8x_A 172 NKCAGTFGLMGTFSSFYSNHIAT--MEG-GCIVTDDEEIYHILL 212 (390)
T ss_dssp TEETTSSSSEEEEECCTTSSSCS--SSC-EEEEESCHHHHHHHH
T ss_pred CcccccccceEEEEccCCCCCcc--CCc-eEEEeCCHHHHHHHH
Confidence 555554 666655 467543 567 8888876 4444443
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=139.12 Aligned_cols=210 Identities=10% Similarity=0.001 Sum_probs=140.3
Q ss_pred ceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC---CCCCCcEEE
Q 002866 150 KVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI---PENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA---~~dEY~VVF 221 (872)
++.|+.+.... .|+.+++++.+ .+.....|+.+.. ..+.|+.|++++ |. +++ ..|+|
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~-----------~~~~~~~y~~~~g---~~~lr~~la~~l~~~~g~~~~~~~-~~i~~ 96 (396)
T 3jtx_A 32 AVPLHIGEPKHPTPKVITDALTA-----------SLHELEKYPLTAG---LPELRQACANWLKRRYDGLTVDAD-NEILP 96 (396)
T ss_dssp CEECSCCSCCSCCCHHHHHHHHH-----------TGGGGGSCCCTTC---CHHHHHHHHHHHHHHTTTCCCCTT-TSEEE
T ss_pred eEEeCCcCCCCCCCHHHHHHHHH-----------HhhhccCCCCCCC---cHHHHHHHHHHHHHhcCCCCCCCC-CeEEE
Confidence 78888776543 45677776432 1111123443321 235666666655 74 354 14999
Q ss_pred eCCHHHHHHHHHhhCCCCCC-----CeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhcc
Q 002866 222 TVSRGSAFKLLAESYPFHTN-----KKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRR 296 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~G-----d~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr 296 (872)
|+|+|+|+.+++..+ .++| +.|++..- .|. .+...++..|+++..+|++..+..++.++|++++..
T Consensus 97 t~g~~~al~~~~~~~-~~~g~~~~~d~vl~~~p-~~~---~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~---- 167 (396)
T 3jtx_A 97 VLGSREALFSFVQTV-LNPVSDGIKPAIVSPNP-FYQ---IYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK---- 167 (396)
T ss_dssp ESSHHHHHHHHHHHH-CCC---CCCCEEEEEES-CCH---HHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----
T ss_pred cCCcHHHHHHHHHHH-hCCCCccCCCEEEEcCC-CcH---hHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc----
Confidence 999999999999887 3565 57776522 233 334456778999999998654456788999888864
Q ss_pred CCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCCC--ccCCCC--------CCCCcEEEEcc
Q 002866 297 KKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKDM--DSLGLS--------LFRPDFIITSF 362 (872)
Q Consensus 297 ~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~m--ipLDLs--------~l~~DFlv~S~ 362 (872)
++++|.++..+|.||.++|.+. ++.|+++|+++++|.++...... .++.+- ..+.++++.|+
T Consensus 168 ----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 243 (396)
T 3jtx_A 168 ----RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSL 243 (396)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEES
T ss_pred ----CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecc
Confidence 4889999999999999999863 35678999999999997642100 122211 25788999999
Q ss_pred cccCCCCCCceEEEEEeCCCccccc
Q 002866 363 YRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 363 HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+|.||.+-.++|+++..+++++.+.
T Consensus 244 sK~~~~~G~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 244 SKRSNVPGLRSGFVAGDAELLKNFL 268 (396)
T ss_dssp TTTSSCGGGCCEEEEECHHHHHHHH
T ss_pred ccccCCcccceEEEEeCHHHHHHHH
Confidence 9987741123788887766655543
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=148.06 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.+++++++.|++ .++||+|+++|+.+++.++ .++||+|++... .|... ..+...+++.|++++.++.+
T Consensus 82 ~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~-~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARS-LFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp HHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESC-CCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCC-ccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 4678999999999973 3899999999999998887 688999887643 23333 33444467789999998764
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++|+++|.. +|++|.++..+|.||.+.|++. .+.|+++|+++++|.++..|. ....+ .+++
T Consensus 155 -----d~~~l~~ai~~--------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~--~~~~~-~~g~ 218 (414)
T 3ndn_A 155 -----DLSQWERALSV--------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPL--LQQGF-PLGV 218 (414)
T ss_dssp -----CHHHHHHHTSS--------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHH--HCCCG-GGTC
T ss_pred -----CHHHHHHhcCC--------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hcCC
Confidence 57888887742 5899999999999999999984 567899999999999988664 11222 5689
Q ss_pred cEEEEcccccCCCCCCc---eEEEEEeCCCc
Q 002866 356 DFIITSFYRVFGFDPTG---FGCLLIKKSVM 383 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG---vG~LyVRk~~i 383 (872)
|+++.|++|+|| +.| .|+++.+++.+
T Consensus 219 div~~S~sK~l~--~~G~~~~G~vv~~~~~~ 247 (414)
T 3ndn_A 219 DVVVYSGTKHID--GQGRVLGGAILGDREYI 247 (414)
T ss_dssp SEEEEETTTTTT--CSSCCCCEEEEECHHHH
T ss_pred CeEeccCCcccc--CCCCceEEEEEECHHHH
Confidence 999999999998 446 69888877644
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=145.86 Aligned_cols=218 Identities=8% Similarity=0.020 Sum_probs=142.8
Q ss_pred CceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+..|||+++..+ .++.+++++.+ .+ .... +..+ +.++ ....+.+++++++++++++ .|+|
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~-------~~-~~~~-~~~~~~~~~--~~~~~l~~~la~~~~~~~~--~v~~ 108 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKS-------QI-DAMS-HVMFGGITH--APAIELCRKLVAMTPQPLE--CVFL 108 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHH-------HH-HHCS-CCCCSSEEC--HHHHHHHHHHHHHSCTTCC--EEEE
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHH-------HH-Hhcc-cccccccCC--HHHHHHHHHHHHhCCCCCC--EEEE
Confidence 468999976642 46788887543 12 1111 0001 1122 3456778899999998766 5999
Q ss_pred eCCHHHHHHHHHhhCC-C-----CCCCeEEEecccCchhHHHHHHHHH-----HcC-----cEEEEEeccC-----CCCc
Q 002866 222 TVSRGSAFKLLAESYP-F-----HTNKKLLTMFDYESQSVNWMAQSAK-----EKG-----AKVYSAWFKW-----PTLK 280 (872)
Q Consensus 222 TsnATeALnLVaeslp-f-----~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rkG-----aeV~~Vpvd~-----p~g~ 280 (872)
|+|+|+|+++++..+. + ++|++||+.....|........... +.+ ..+..++++. ..+.
T Consensus 109 ~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (429)
T 1s0a_A 109 ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDE 188 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCG
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchH
Confidence 9999999999877531 1 1478888765334554433221110 111 1355566542 1235
Q ss_pred cCHHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCC
Q 002866 281 LCSTDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLS 351 (872)
Q Consensus 281 Id~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs 351 (872)
++.++|+++|... ..++++|.+..+ +|+||.++| ++. .+.|+++|+++++|.+|. .|.. +..++..
T Consensus 189 ~d~~~l~~~l~~~-----~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~ 263 (429)
T 1s0a_A 189 RDMVGFARLMAAH-----RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263 (429)
T ss_dssp GGGHHHHHHHHHH-----TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred HHHHHHHHHHHhC-----CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhc
Confidence 7889999888642 125789999998 999999998 874 567899999999999986 4321 1123333
Q ss_pred CCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
...+|++++| |.||+ + .++|++++++++++.+.
T Consensus 264 ~~~~d~~t~s--K~l~~-G~~~iG~~~~~~~~~~~l~ 297 (429)
T 1s0a_A 264 EIAPDILCLG--KALTG-GTMTLSATLTTREVAETIS 297 (429)
T ss_dssp TCCCSEEEEC--GGGGT-SSSCCEEEEECHHHHHHHH
T ss_pred CCCCCEEEec--ccccC-CCccceEEEeCHHHHHHhh
Confidence 4578999877 88886 6 78999999988776664
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-14 Score=152.02 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC--------------eEEEecccCchhHHHH
Q 002866 199 EHDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNK--------------KLLTMFDYESQSVNWM 258 (872)
Q Consensus 199 ieeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd--------------~ILT~~DhEHnSVl~~ 258 (872)
+.+.|++||+++ +++++ .|+||+|+|+|+++++.++ .++|+ ++++..+..+......
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSE--NIALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHH--HEEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 467999999998 66765 5999999999999999988 45666 6765422122222110
Q ss_pred ---HHHHHHcCcEEEEEeccCCCC----ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHH
Q 002866 259 ---AQSAKEKGAKVYSAWFKWPTL----KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQ 327 (872)
Q Consensus 259 ---~~~AkrkGaeV~~Vpvd~p~g----~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Ar 327 (872)
.......|+.+..++++..++ .++.++|++++... ++++++|.+++.+|.||+++|. + +++.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~-----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~ 236 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK-----EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK 236 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH-----TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhc-----CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 011234588888888764222 57999998875321 2368999999999999999994 4 345689
Q ss_pred HCCcEEEeeccccCCCCC---ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 328 QNHWHVLLDAGSLGPKDM---DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 328 e~G~~VLVDAAQ~aG~~m---ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
++|+++++|.++..+... ..+.....+.++++.|++|+ +.+..++|+++.++++++.+
T Consensus 237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~ 297 (444)
T 3if2_A 237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAV 297 (444)
T ss_dssp HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHH
T ss_pred HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHH
Confidence 999999999998642210 11222234678999999997 53134578777766655544
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=143.37 Aligned_cols=176 Identities=10% Similarity=0.090 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 196 GTVEHDIKTRIMDHLN--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 196 ~~~ieeARerIA~lLg--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+..+++++.+++.+| ++++ .|+||+|+|+|+++++..+ .++|++|++... .|. .+...++..|.++..+|
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~--~v~~~~g~~ea~~~a~~~~-~~~gd~Vi~~~~-~y~---~~~~~~~~~g~~~~~~~ 171 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKE--DILFIDGVVPAISIALQAF-SEKGDAVLINSP-VYY---PFARTIRLNDHRLVENS 171 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTEEEEEEEES-CCH---HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCC-CcH---HHHHHHHHCCCEEEecc
Confidence 5677788888888888 4444 6999999999999999987 467888876532 233 23445566899999999
Q ss_pred ccCCCC--ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccC----CC
Q 002866 274 FKWPTL--KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 274 vd~p~g--~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
+++..+ .++.++|+++|.. +++++|.++..+|+||.++|. + +.+.|+++|+++++|.+|.. |+
T Consensus 172 ~~~~~~~~~~d~~~le~~i~~-------~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~ 244 (421)
T 3l8a_A 172 LQIINGRFEIDFEQLEKDIID-------NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN 244 (421)
T ss_dssp CEEETTEEECCHHHHHHHHHH-------TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred ccccCCCeeeCHHHHHHHhhc-------cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 863233 5799999999863 258999999999999999654 4 34567999999999999864 22
Q ss_pred CCccCCCCC-----CCCcEEEEcccccCCCCCCceEEEEEe-CCCccccc
Q 002866 344 DMDSLGLSL-----FRPDFIITSFYRVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 344 ~mipLDLs~-----l~~DFlv~S~HK~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
....+.. .+.++++.|++|+||.+...+|+++++ +++.+.+.
T Consensus 245 --~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~ 292 (421)
T 3l8a_A 245 --THHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQ 292 (421)
T ss_dssp --CCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHH
T ss_pred --CCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHH
Confidence 1222323 245599999999998311235999887 55555443
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=140.26 Aligned_cols=205 Identities=12% Similarity=0.004 Sum_probs=140.5
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCC------CCCCcEEE--
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIP------ENEYGLVF-- 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~------~dEY~VVF-- 221 (872)
-+|+|+.+++++.+.+.+++.+ +..... ...|..+. -..+.|+.||++++.. ++ .|+|
T Consensus 36 g~~~d~~~~~~~~~~v~~a~~~--------~~~~~~-~~~Y~~~~---g~~~lr~~ia~~~~~~~~~~~~~~--~i~~v~ 101 (401)
T 7aat_A 36 GAYRDDNGKPYVLNCVRKAEAM--------IAAKKM-DKEYLPIA---GLADFTRASAELALGENSEAFKSG--RYVTVQ 101 (401)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHH--------HHHTTC-CCCCCCTT---CCHHHHHHHHHHHHCTTCHHHHTT--CEEEEE
T ss_pred eeEECCCCCEechHHHHHHHHH--------hccccc-ccCCCCCC---CCHHHHHHHHHHhcCCCccccccC--ceEEEe
Confidence 5799999999888777776422 221101 11232211 2457899999998754 55 4877
Q ss_pred eCCHHHHHHHHHhhCC--CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESYP--FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaeslp--f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++..+. .++|++|++..- .|.... ..++..|+++..+|++. .++.++.+++++.+.+ .
T Consensus 102 t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p-~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~ 172 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFFKFSRDVYLPKP-SWGNHT---PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK-----I 172 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEEES-CCTTHH---HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-----S
T ss_pred cCcchHHHHHHHHHHHHhccCCCEEEEcCC-CchhHH---HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh-----C
Confidence 9999999999877642 367999876532 233333 34566799999999853 2467899988888864 2
Q ss_pred CCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccc-cCCCCCc-----cCC--CCCCCCcEEEEcccccC
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGS-LGPKDMD-----SLG--LSLFRPDFIITSFYRVF 366 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ-~aG~~mi-----pLD--Ls~l~~DFlv~S~HK~f 366 (872)
.++++++.++..+|.||..++.+ +++.|+++|+++++|.+. ..+.... ++. .......+++.|++|.|
T Consensus 173 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 173 PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 34689999999999999988864 345679999999999984 3332100 010 12235568999999999
Q ss_pred CCCCCc--eEEEEEe
Q 002866 367 GFDPTG--FGCLLIK 379 (872)
Q Consensus 367 G~~PtG--vG~LyVR 379 (872)
| +.| +|+|++.
T Consensus 253 ~--~~G~RiG~l~~~ 265 (401)
T 7aat_A 253 G--LYGERAGAFTVI 265 (401)
T ss_dssp C--CGGGCEEEEEEE
T ss_pred c--cccCceEEEEEE
Confidence 8 558 8999863
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=142.83 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=118.1
Q ss_pred HHHHHHHHH-HHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRI-MDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerI-A~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
.+.+.|+++ |+++|.. . .++||+|+|+|+++++.++.+++||+||+.. ..|.++.. .++..|++++.++++.
T Consensus 37 ~~~~l~~~~~a~~~g~~-~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~-~~~~~~~~---~~~~~G~~~~~v~~~~ 109 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQNR-G--AVTTVANATLGLMAAIQLKKRKKGKYALMPS-FTFPATPL---AAIWCGLEPYFIDISI 109 (377)
T ss_dssp HHHHHHHHHHHHTSTTC-S--EEEEESCHHHHHHHHHHHHSCTTCCEEEEES-SSCTHHHH---HHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCC-C--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECC-CCcHHHHH---HHHHcCCEEEEEecCC
Confidence 467899999 9999942 2 3899999999999999987778999988763 34555543 3456799999999986
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC--
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF-- 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l-- 353 (872)
.++.+++++|+++|...+ .+|++|. .+|.+|...|++. .+.|+ +|+.|++|++|+.|. ..+....
T Consensus 110 ~~~~~d~~~l~~~i~~~~-----~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~---~~~~~~~g~ 177 (377)
T 3ju7_A 110 DDWYMDKTVLWDKIEELK-----EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGL---MNGGMHYGQ 177 (377)
T ss_dssp TTCSBCHHHHHHHHHHHG-----GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTC---EETTEETTT
T ss_pred ccCCcCHHHHHHHHhcCC-----CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCC---eECCEeccC
Confidence 667899999999883210 1378776 4578999999974 56789 999999999999875 2333223
Q ss_pred -CCcEEEEc--ccccCCCCCCceEEEEE
Q 002866 354 -RPDFIITS--FYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 354 -~~DFlv~S--~HK~fG~~PtGvG~LyV 378 (872)
..|+.++| .||+++. |.|.+++
T Consensus 178 ~~~d~~~~S~~~~K~l~~---g~gG~~~ 202 (377)
T 3ju7_A 178 DFSGMIIYSFHATKPFGI---GEGGLIY 202 (377)
T ss_dssp TCSSEEEEECBTTSSSCC---BSCEEEE
T ss_pred CCCcEEEEECCCCCcCCC---CCcEEEE
Confidence 24666665 5799984 4444444
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=147.94 Aligned_cols=175 Identities=10% Similarity=0.105 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhc-----CCCCCCCc---EEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHH-cCcEE
Q 002866 199 EHDIKTRIMDHL-----NIPENEYG---LVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKE-KGAKV 269 (872)
Q Consensus 199 ieeARerIA~lL-----gA~~dEY~---VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Akr-kGaeV 269 (872)
..+.|++||+++ +++++ . |+||+|+|+|+++++.++ +++||+|++..- .|.. +...++. .|+++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~--~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p-~y~~---~~~~~~~~~g~~~ 162 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID--NMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEH-NWGN---YKLVFNTRNGANL 162 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG--GBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESS-CCTH---HHHHHTTTTCCEE
T ss_pred CHHHHHHHHHHHhccCcccCCC--ccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCC-cCcc---HHHHHHHhcCCeE
Confidence 357999999999 88765 5 999999999999999987 478999887632 2332 3345566 79999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHH-----CCcEEEeecccc
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQ-----NHWHVLLDAGSL 340 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are-----~G~~VLVDAAQ~ 340 (872)
..+|++..+..++.++|+++|... ..+++++++++.+|.||.++| ++ +++.|++ +|+++++|.++.
T Consensus 163 ~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~ 237 (430)
T 2x5f_A 163 QTYPIFDKDGHYTTDSLVEALQSY-----NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY 237 (430)
T ss_dssp EEECCBCTTSCBCSHHHHHHHHHC-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEeccCccCCcCHHHHHHHHHhc-----CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcc
Confidence 999987633568999999998642 125889999999999999999 44 4467789 999999999976
Q ss_pred CC----CCCccC--CCCC-CCC---cEEEEcccccCCCCCCc--eEEEEE---eCCCccccc
Q 002866 341 GP----KDMDSL--GLSL-FRP---DFIITSFYRVFGFDPTG--FGCLLI---KKSVMGSLQ 387 (872)
Q Consensus 341 aG----~~mipL--DLs~-l~~---DFlv~S~HK~fG~~PtG--vG~LyV---Rk~~i~~L~ 387 (872)
.. ....++ ++.. .+. ++++.|++|+||. .| +|++++ ++++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 238 GLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFA--WGFRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp TCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC--GGGCCEEEEEBCCCHHHHHHHH
T ss_pred cccCCcccchHHHHHHhhccCCcceEEEEEecccCCCC--CCCCeEEEEEecCCHHHHHHHH
Confidence 42 100121 3322 344 6889999999984 47 699999 766665553
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=144.07 Aligned_cols=172 Identities=14% Similarity=0.163 Sum_probs=129.4
Q ss_pred HHHHHHHHHhc-CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-
Q 002866 200 HDIKTRIMDHL-NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP- 277 (872)
Q Consensus 200 eeARerIA~lL-gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p- 277 (872)
.+.|++||+++ +++++ .|+||+|+|+|+.+++.++ .++||+|++..- .|.+. ...++..|+++..+|++..
T Consensus 66 ~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~-~~~~~---~~~~~~~g~~~~~v~~~~~~ 138 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPE--QILQTNGATGANLLVLYSL-IEPGDHVISLYP-TYQQL---YDIPKSLGAEVDLWQIEEEN 138 (375)
T ss_dssp HHHHHHHHTTSSSCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEES-SCTHH---HHHHHHTTCEEEEEEEEGGG
T ss_pred HHHHHHHHHHhccCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCC-CchhH---HHHHHHcCCEEEEEeccccC
Confidence 57999999998 46665 5999999999999999887 578999876532 23333 3445678999999998743
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCCCC-ccCCCCC
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPKDM-DSLGLSL 352 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~~m-ipLDLs~ 352 (872)
+..++.++|++++.. ++++|.++..+|.||.++| ++ +++.|+++|+++++|.++...... .+.-...
T Consensus 139 ~~~~d~~~l~~~l~~--------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~ 210 (375)
T 3op7_A 139 GWLPDLEKLRQLIRP--------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEV 210 (375)
T ss_dssp TTEECHHHHHHHCCT--------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHH
T ss_pred CCCCCHHHHHHhhcc--------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhh
Confidence 334789999888752 5889999999999999999 65 456789999999999997653210 0111122
Q ss_pred CCCcEEEEcccccCCCCCCc--eEEEEEeCCCcccccC
Q 002866 353 FRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~P 388 (872)
.+.++++.|++|.||. .| +|++++++++++.+..
T Consensus 211 ~~~~i~~~s~sK~~~~--~G~r~G~v~~~~~l~~~~~~ 246 (375)
T 3op7_A 211 YDKGIAVNSLSKTYSL--PGIRIGWVAANHQVTDILRD 246 (375)
T ss_dssp CTTEEEEEESSSSSSC--GGGCCEEEECCHHHHHHHTT
T ss_pred cCCEEEEeEChhhcCC--cccceEEEEeCHHHHHHHHH
Confidence 4567899999999983 35 5999988877777654
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=142.84 Aligned_cols=211 Identities=12% Similarity=0.066 Sum_probs=142.0
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
+.+.|..+...+ .|+.+++++.+ .+.... ....|+.+. ...+.|++|+++++ ++++ ..|+|
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~-------~~~~~~-~~~~y~~~~---g~~~lr~~la~~~~~~~g~~~~~~-~~i~~ 96 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQH-------AVSGDF-MLNQYTKTF---GYPPLTKILASFFGELLGQEIDPL-RNVLV 96 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHH-------HHHSCG-GGGSCCCTT---CCHHHHHHHHHHHHHHHTCCCCHH-HHEEE
T ss_pred CceEeCCCCCCCCCCHHHHHHHHH-------HHhCCC-ccCCCCCCC---CCHHHHHHHHHHHHHhhCCCCCCC-CcEEE
Confidence 478888777553 56677776432 111100 001344332 12356777777766 5541 25999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-----------CCCccCHHHHHHHH
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-----------PTLKLCSTDLRKQI 290 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-----------p~g~Id~edLe~~I 290 (872)
|+|+|+|+++++.++ .++|++|++..- .|... ...++..|+++..+|++. .+..++.++|++++
T Consensus 97 ~~g~~~a~~~~~~~~-~~~gd~vl~~~p-~~~~~---~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~ 171 (422)
T 3fvs_A 97 TVGGYGALFTAFQAL-VDEGDEVIIIEP-FFDCY---EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF 171 (422)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTH---HHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTC
T ss_pred ECChHHHHHHHHHHH-cCCCCEEEEcCC-Cchhh---HHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhc
Confidence 999999999999987 578998876532 23333 344566899999999875 12357888887766
Q ss_pred hhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccC----CCCCccCCCCCC----CCcEE
Q 002866 291 SSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLF----RPDFI 358 (872)
Q Consensus 291 ~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l----~~DFl 358 (872)
. +++++|.++..+|.||.++| ++ +++.|+++|+++++|.++.. ++ .+.++..+ +.+++
T Consensus 172 ~--------~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 241 (422)
T 3fvs_A 172 T--------SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASLPGMWERTLT 241 (422)
T ss_dssp C--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEE
T ss_pred C--------CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCChhhcccccCcEEE
Confidence 4 25899999999999999996 54 34678999999999999864 32 23333333 45599
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+.|++|.||.+-.++|+++++++.++.+
T Consensus 242 ~~S~sK~~g~~G~r~G~~~~~~~~~~~~ 269 (422)
T 3fvs_A 242 IGSAGKTFSATGWKVGWVLGPDHIMKHL 269 (422)
T ss_dssp EEEHHHHHTCGGGCCEEEECCHHHHHHH
T ss_pred EecchhccCCccceEEEEEeCHHHHHHH
Confidence 9999999983112389998877766554
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=140.00 Aligned_cols=208 Identities=14% Similarity=0.056 Sum_probs=140.4
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVFTs 223 (872)
-+|+|+.+.+|.++.+++++.+ ....... ...|+.+. ...+.|+.|+++++. +++...|+||+
T Consensus 34 g~y~d~~~~~~~~~~v~~a~~~-------~~~~~~~-~~~y~~~~---g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~ 102 (397)
T 3fsl_A 34 GLYYNEDGIIPQLQAVAEAEAR-------LNAQPHG-ASLYLPME---GLNCYRHAIAPLLFGADHPVLKQQRVATIQTL 102 (397)
T ss_dssp CCCCCTTSCCCCCHHHHHHHHH-------HHHSCCC-CCCCCCTT---CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred eEEECCCCCccCcHHHHHHHHh-------hccCccc-cccCCCCC---chHHHHHHHHHHHhcCCcccccccceEEEEcC
Confidence 4688988999988888887421 0111100 11233221 235789999999865 34411599999
Q ss_pred CHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc-CCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 224 SRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK-WPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 224 nATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd-~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+++++..+. +++|++|++..- .|. .+...++..|+++..+|+. ..++.++.++|++.+... .++
T Consensus 103 g~~~a~~~~~~~~~~~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~ 173 (397)
T 3fsl_A 103 GGSGALKVGADFLKRYFPESGVWVSDP-TWE---NHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL-----QAG 173 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEESS-CCH---HHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC-----CTT
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEeCC-Cch---hHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC-----CCC
Confidence 99999999854321 467899887632 233 3345567789999999982 224678999999998642 246
Q ss_pred ceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCCC-----cc-CCC-CCCCCcEEEEcccccCCCCC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKDM-----DS-LGL-SLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~m-----ip-LDL-s~l~~DFlv~S~HK~fG~~P 370 (872)
++++.++..+|.||.++|.+ +++.|+++|+++++|.+......- .+ ..+ ...+..+++.|+.|.|| +
T Consensus 174 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--~ 251 (397)
T 3fsl_A 174 SIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS--L 251 (397)
T ss_dssp CEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT--C
T ss_pred CEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc--C
Confidence 89999999999999998875 345678999999999996432100 00 001 12355688999999998 5
Q ss_pred Cc--eEEEEEe
Q 002866 371 TG--FGCLLIK 379 (872)
Q Consensus 371 tG--vG~LyVR 379 (872)
.| +|++++.
T Consensus 252 ~G~riG~~~~~ 262 (397)
T 3fsl_A 252 YGERVGGLSVM 262 (397)
T ss_dssp GGGCCEEEEEE
T ss_pred cCCCeeEEEEe
Confidence 57 7887753
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=144.94 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHH-HHHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQ-SAKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~-~AkrkGaeV~~Vpv 274 (872)
...+.+|+.+++++|++++ .|+||+| |+|+.+++.++ +++|+.|++.. ..|.++. .... .....++.+..+++
T Consensus 76 ~~~~~~~~~la~~~~~~~~--~v~~~sG-s~a~~~a~~~~-~~~gd~v~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 150 (420)
T 3gbx_A 76 VVEQLAIDRAKELFGADYA--NVQPHSG-SQANFAVYTAL-LQPGDTVLGMN-LAQGGHLTHGSPVNFSGKLYNIVPYGI 150 (420)
T ss_dssp HHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH-CCTTCEEEEEE-EC------------CHHHHSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCc--eeEecCc-HHHHHHHHHHh-cCCCCEEEecc-hhhcceeccchhhhhcccceeEEeccC
Confidence 4566789999999999754 2555555 88999888776 57899987653 2344422 1111 11223455556666
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC---CCccCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK---DMDSLGL 350 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~---~mipLDL 350 (872)
+ .++.++.++|+++|... ++++|.+...+| |...|++. .+.|+++|+++++|.+|+.|. ...+..+
T Consensus 151 ~-~~~~~d~~~l~~~i~~~-------~~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~ 220 (420)
T 3gbx_A 151 D-ESGKIDYDEMAKLAKEH-------KPKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV 220 (420)
T ss_dssp C-TTCSCCHHHHHHHHHHH-------CCSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST
T ss_pred C-ccCCcCHHHHHHHHHhc-------CCeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCccc
Confidence 6 35678999999999752 377888865443 67899974 567899999999999986442 0012233
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeC---CCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKK---SVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk---~~i~~L~ 387 (872)
. .+|++++|+||+|++ |.| |+++.++ .....+.
T Consensus 221 ~--~~di~~~s~sK~~~g-~~g-g~~~~~~~~~~~~~~~~ 256 (420)
T 3gbx_A 221 P--HAHVVTTTTHKTLAG-PRG-GLILAKGGDEELYKKLN 256 (420)
T ss_dssp T--TSSEEEEESSGGGCS-CSC-EEEEESSCCHHHHHHHH
T ss_pred c--cCCEEEeecccCCCC-CCc-eEEEEcCCcHHHHHHhh
Confidence 3 389999999999966 787 8888887 4444443
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=146.24 Aligned_cols=158 Identities=12% Similarity=0.021 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.+++||+++|++. .++++++++|+.+++.++ .++||+|++... .|.+... +...++..|++++.++.+
T Consensus 83 ~~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~-~y~~~~~~~~~~~~~~G~~~~~v~~~- 155 (430)
T 3ri6_A 83 TVEDLEQRLKNLTGALG----VLALGSGMAAISTAILTL-ARAGDSVVTTDR-LFGHTLSLFQKTLPSFGIEVRFVDVM- 155 (430)
T ss_dssp HHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-CCTTCEEEEETT-CCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEcCC-CchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 45789999999999842 566667789999988877 678999887643 3444443 333677889999998764
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++|+++|.. +|++|.+...+|.+|.+.|++. .+.|+++|+++++|.+++.|. ..+...+++
T Consensus 156 -----d~~~l~~ai~~--------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~---~~~~~~~g~ 219 (430)
T 3ri6_A 156 -----DSLAVEHACDE--------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPY---LLEAKRLGV 219 (430)
T ss_dssp -----CHHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTT---TCCGGGGTC
T ss_pred -----CHHHHHHhhCC--------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc---cCChHHcCC
Confidence 57888877742 5899999999999999999984 567899999999999998875 245556789
Q ss_pred cEEEEcccccCCCCC-CceEEEEEe
Q 002866 356 DFIITSFYRVFGFDP-TGFGCLLIK 379 (872)
Q Consensus 356 DFlv~S~HK~fG~~P-tGvG~LyVR 379 (872)
|+++.|++|++|+ | .++|.+++.
T Consensus 220 div~~S~sK~l~g-~g~~~gG~vv~ 243 (430)
T 3ri6_A 220 DIEVLSSTKFISG-GGTSVGGVLID 243 (430)
T ss_dssp SEEEEECCCEEET-TEEECCEEEEE
T ss_pred EEEEECCcccccC-CCCceEEEEEE
Confidence 9999999999985 3 236666653
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=145.36 Aligned_cols=204 Identities=14% Similarity=0.090 Sum_probs=138.0
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc-CC--CCCCCcEEE--eCC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL-NI--PENEYGLVF--TVS 224 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL-gA--~~dEY~VVF--Tsn 224 (872)
-.|+|..+..+.++.+.+++.+ ..... ....|+.+. ...+.|++||+++ +. +++ .|+| |+|
T Consensus 34 g~~~~~~~~~~~~~~v~~a~~~--------~~~~~-~~~~y~~~~---g~~~lr~~la~~~~~~~~~~~--~v~~~~~~g 99 (394)
T 2ay1_A 34 GVYKDATGHTPIMRAVHAAEQR--------MLETE-TTKTYAGLS---GEPEFQKAMGELILGDGLKSE--TTATLATVG 99 (394)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHH--------HHHHC-CCCCCCCSS---CCHHHHHHHHHHHHGGGCCGG--GEEEEEEEH
T ss_pred ceeeCCCCCccCcHHHHHHHHH--------hcCCc-ccCCCCCCC---CcHHHHHHHHHHHhCCCCCcc--cEEEEecCC
Confidence 3466666666777788776432 11111 111243221 2357999999997 55 454 5999 999
Q ss_pred HHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 225 RGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 225 ATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
+|+|+.+++..+. +.+|++|++..- .|. .+...++..|+++..+|.+. .+..++.++|++++... .+++
T Consensus 100 ~~~a~~~~~~~~~~~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~ 170 (394)
T 2ay1_A 100 GTGALRQALELARMANPDLRVFVSDP-TWP---NHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA-----KKGD 170 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEES-CCH---HHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC-----CTTC
T ss_pred chhHHHHHHHHHHhcCCCCEEEEcCC-CCh---hHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC-----CCCC
Confidence 9999999887653 347888876532 233 33445566799999999852 24568999999988642 2347
Q ss_pred eEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCC-----CccCC-CCCCCC-cEEEEcccccCCCCCC
Q 002866 303 GLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKD-----MDSLG-LSLFRP-DFIITSFYRVFGFDPT 371 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~-----mipLD-Ls~l~~-DFlv~S~HK~fG~~Pt 371 (872)
.++++++.+|.||.++|.+. ++.|+++|+++++|.++..... ..++. +...+. .+++.|++|+|| +.
T Consensus 171 ~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~ 248 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG--IY 248 (394)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT--CG
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc--Cc
Confidence 88999999999999999752 4567899999999999864320 01222 222233 477889999998 45
Q ss_pred c--eEEEEE
Q 002866 372 G--FGCLLI 378 (872)
Q Consensus 372 G--vG~LyV 378 (872)
| +|++++
T Consensus 249 G~riG~~~~ 257 (394)
T 2ay1_A 249 RERTGCLLA 257 (394)
T ss_dssp GGCEEEEEE
T ss_pred CCccceEEE
Confidence 7 599998
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=145.68 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhc----C---CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEE
Q 002866 199 EHDIKTRIMDHL----N---IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYS 271 (872)
Q Consensus 199 ieeARerIA~lL----g---A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~ 271 (872)
..+.|+.||+++ | ++++ .|+||+|+|+|+.+++.++ .++|++|++..- .|. .+...++..|+++..
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p-~y~---~~~~~~~~~g~~~~~ 159 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDP-AYL---GAINAFRQYLANFVV 159 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEES-CCH---HHHHHHHTTTCEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCcc--cEEEeccHHHHHHHHHHHh-CCCCCEEEEeCC-CcH---HHHHHHHHcCCEEEE
Confidence 357888999988 9 4454 6999999999999999987 468899876532 233 334456668999999
Q ss_pred EeccCCCCccCHHHHHHHHhhhhccCCCCCceEE-EEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC--C
Q 002866 272 AWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF-VFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK--D 344 (872)
Q Consensus 272 Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV-a~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~--~ 344 (872)
+|++. ++ ++.++|+++|..........++++| +++..+|.||.++|.+ +++.|+++|+++++|.++.... .
T Consensus 160 v~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g 237 (425)
T 1vp4_A 160 VPLED-DG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG 237 (425)
T ss_dssp EEEET-TE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS
T ss_pred eccCC-CC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC
Confidence 99876 33 8999999988641100001147787 6899999999999974 3466789999999999986521 0
Q ss_pred CccCCCC---CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 345 MDSLGLS---LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mipLDLs---~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.....+. ..+.++++.|++|+||+ -..+|++++++++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~~-G~r~G~~~~~~~~~~~l~ 282 (425)
T 1vp4_A 238 ETVDPIFKIGGPERVVLLNTFSKVLAP-GLRIGMVAGSKEFIRKIV 282 (425)
T ss_dssp CCCCCHHHHHCTTTEEEEEESTTTTCG-GGCEEEEECCHHHHHHHH
T ss_pred CCCcCHHHhCCCCCEEEEecccccccc-ccceEEEeeCHHHHHHHH
Confidence 0122332 23567999999999983 122799999877665553
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=141.31 Aligned_cols=204 Identities=14% Similarity=0.074 Sum_probs=139.4
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE--
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF-- 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF-- 221 (872)
-.|+|..+..+.++.+.+++.+ ...... ...|+.+ ....+.|++||++++ ++++ .|+|
T Consensus 34 g~~~~~~~~~~~~~~v~~a~~~--------~~~~~~-~~~y~~~---~g~~~lr~~la~~~~~~~~~~~~~~--~v~~~~ 99 (396)
T 2q7w_A 34 GVYKDETGKTPVLTSVKKAEQY--------LLENET-TKNYLGI---DGIPEFGRCTQELLFGKGSALINDK--RARTAQ 99 (396)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHH--------HHHHCC-CCCCCCT---TCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEE
T ss_pred ccccCCCCCccCcHHHHHHHHh--------hcCccc-ccCCCCC---CCCHHHHHHHHHHHhcCCCCccccc--cEEEEe
Confidence 4678887777888888877432 111111 1124322 124579999999983 2354 4888
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|+|+|+.+++..+. +.+|++|++..- .|. .+...++..|+++..+|.+. ++..++.++|++++... .
T Consensus 100 ~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p-~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~ 170 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKNTSVKRVWVSNP-SWP---NHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA-----Q 170 (396)
T ss_dssp ESHHHHHHHHHHHHHHHHSCCCEEEEEES-CCT---HHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC-----C
T ss_pred cccchhhHHHHHHHHHHhCCCCEEEEcCC-Cch---hHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC-----C
Confidence 9999999999887653 458999876532 222 23445666899999999842 24668999999988631 2
Q ss_pred CCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC-C----CccCC-CCCC-CCcEEEEcccccCCC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-D----MDSLG-LSLF-RPDFIITSFYRVFGF 368 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~----mipLD-Ls~l-~~DFlv~S~HK~fG~ 368 (872)
+++++++++..+|.||.++|.+ +++.|+++|+++++|.++.... + ..++. +... ..++++.|++|.||
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 249 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG- 249 (396)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-
Confidence 3578999999999999999975 3456789999999999965421 0 01121 2111 34688999999998
Q ss_pred CCCc--eEEEEE
Q 002866 369 DPTG--FGCLLI 378 (872)
Q Consensus 369 ~PtG--vG~LyV 378 (872)
+.| +|++++
T Consensus 250 -~~G~riG~~~~ 260 (396)
T 2q7w_A 250 -LYNERVGACTL 260 (396)
T ss_dssp -CGGGCCEEEEE
T ss_pred -ccccccceEEE
Confidence 558 699987
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=154.49 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++|+.+++++|++. .++||+|+|+|++.++.++ .++||+||+.. ..|.++... +...|+++++++.+.
T Consensus 205 g~v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~-~~h~s~~~~---~~~~G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDR-NCHKSIEQG---LMLTGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEES-SCCHHHHHH---HHHHCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHh-cCCCCEEEECC-CchHHHHHH---HHHcCCEEEEEeCCC
Confidence 567889999999999963 4788888899999999887 47899988764 467777544 344699999998764
Q ss_pred CC----Ccc-----CHHHHHHHHhhhh--ccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC
Q 002866 277 PT----LKL-----CSTDLRKQISSKK--RRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 277 p~----g~I-----d~edLe~~I~~~~--rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
+. +.+ +.++|+++|.... +++...+++++++++ .|.+|.++|++ +++.|+++|+++++|+||.++..
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~-pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEES-SCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEEC-CCCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 21 235 8999999997521 111222346888887 47899999998 45688999999999999865310
Q ss_pred CccC--CCCC-CC--CcE------EEEcccccCCCCCCceEEEEEeCC
Q 002866 345 MDSL--GLSL-FR--PDF------IITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 345 mipL--DLs~-l~--~DF------lv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
..+. +.+. .+ +|+ +++|+||++++ |.|.|+++++++
T Consensus 356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~ 402 (755)
T 2vyc_A 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREG 402 (755)
T ss_dssp GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECC
T ss_pred cCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCc
Confidence 0011 1222 34 687 99999999988 899999999876
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=135.25 Aligned_cols=200 Identities=12% Similarity=0.061 Sum_probs=135.5
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
.++.|..+... +.++.+++++.+ .+.....|.++.. .+.|++||+++|++++ .|+||+|+|+
T Consensus 16 ~~id~~~~~~~~~~~~~v~~a~~~-----------~~~~~~~y~~~~~----~~lr~~la~~~~~~~~--~i~~t~g~~~ 78 (350)
T 3fkd_A 16 EIVNFSTTVWTDGDKDHLEKHLVE-----------NLNCIRHYPEPDA----GTLRQMLAKRNSVDNN--AILVTNGPTA 78 (350)
T ss_dssp CCEECSCCSCCCSCCHHHHHHHHH-----------TGGGGGSCCCTTC----HHHHHHHHHHTTCCGG--GEEEESHHHH
T ss_pred cEEEccCCCCCCCCCHHHHHHHHH-----------hHhHHhcCCCCcH----HHHHHHHHHHhCcCHH--HEEEcCCHHH
Confidence 35666655333 346677776432 1111123443321 5799999999999876 5999999999
Q ss_pred HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec-cCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 228 AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 228 ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
|+++++..+. |++|++.. ..+. .+...++..|++++.+|+ +.. ..++. +++++|.
T Consensus 79 al~~~~~~l~---gd~Vi~~~-p~~~---~~~~~~~~~g~~~~~v~~~~~~-~~~~~----------------~~~~~v~ 134 (350)
T 3fkd_A 79 AFYQIAQAFR---GSRSLIAI-PSFA---EYEDACRMYEHEVCFYPSNEDI-GEADF----------------SNMDFCW 134 (350)
T ss_dssp HHHHHHHHTT---TCEEEEEE-SCCH---HHHHHHHHTTCEEEEEETTSCG-GGSCC----------------TTCSEEE
T ss_pred HHHHHHHHHC---CCEEEEeC-CCcH---HHHHHHHHcCCeEEEEecCCcc-ccCcc----------------CCCCEEE
Confidence 9999999986 89987653 2233 344556778999999998 542 22222 2588999
Q ss_pred EeCccCcccchhcHHHH-HHHHHCC-cEEEeeccccCCCC---CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 307 FPVQSRVTGAKYSYQWM-ALAQQNH-WHVLLDAGSLGPKD---MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I-~~Are~G-~~VLVDAAQ~aG~~---mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+++.+|.||.++|++.+ +.++..+ .++++|.++..... .....+...+.++++.|++|+||.+..++|+++++++
T Consensus 135 i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~ 214 (350)
T 3fkd_A 135 LCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKD 214 (350)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHH
T ss_pred EeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHH
Confidence 99999999999999854 4555544 69999999752210 0112233456679999999999831245899999887
Q ss_pred CcccccCC
Q 002866 382 VMGSLQNQ 389 (872)
Q Consensus 382 ~i~~L~P~ 389 (872)
+++.+...
T Consensus 215 ~~~~~~~~ 222 (350)
T 3fkd_A 215 FMKRVAAF 222 (350)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77777643
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=150.51 Aligned_cols=178 Identities=12% Similarity=0.009 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHH-------HHHHHcCcEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA-------QSAKEKGAKV 269 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~-------~~AkrkGaeV 269 (872)
...+++++.+++++|++.....|+|| ++|+|+.+++.++ +++||+|++.....|.+...+. ..++..|+++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGI-LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 34678999999999997542223366 6799999999887 5789999877423455554433 3345679999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC----ccCcccchhcHH-HHHHHHH--CCcEEEeeccccCC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV----QSRVTGAKYSYQ-WMALAQQ--NHWHVLLDAGSLGP 342 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~----vSNvTG~i~PLe-~I~~Are--~G~~VLVDAAQ~aG 342 (872)
+.++.++ ++.++.++|+++|.. +|++|.+.. .++.+|.+.|++ +++.|++ +|+++++|.++..+
T Consensus 143 ~~v~~~~-~~~~d~e~l~~~l~~--------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~ 213 (431)
T 3ht4_A 143 NAVPLTE-GGLVDFEAVAAAIHS--------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF 213 (431)
T ss_dssp EECCBCT-TSSBCHHHHHHHCCT--------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred EEeCCCC-CCCcCHHHHHhhcCC--------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhh
Confidence 9999976 478999999988853 589999997 667777788886 4567899 99999999998776
Q ss_pred CCCccCCCCCCCCcEEEEcccccCCC--CCCceEEEEEeCCCcccccC
Q 002866 343 KDMDSLGLSLFRPDFIITSFYRVFGF--DPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 343 ~~mipLDLs~l~~DFlv~S~HK~fG~--~PtGvG~LyVRk~~i~~L~P 388 (872)
. ...+...+++|+++.|++|++|+ .|.| |+++.++++++.+..
T Consensus 214 ~--~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~ 258 (431)
T 3ht4_A 214 I--EEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAY 258 (431)
T ss_dssp S--SSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHH
T ss_pred c--cCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHH
Confidence 4 22334456899999999998542 1677 999999887776654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=138.34 Aligned_cols=202 Identities=13% Similarity=0.099 Sum_probs=133.4
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhcc---CcCcCCCchHHHHHHHHHHHHHh--cC-CCCCCCcEEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSN---HALYGGAEKGTVEHDIKTRIMDH--LN-IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~---~~~ygNpsS~~~ieeARerIA~l--Lg-A~~dEY~VVF 221 (872)
.+++|+.+... +.++.+++++.+ .+. .+.. ...|+.. ....+.|++||++ .| ++++ .|+|
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~-~~~~~~~~~~y~~~---~g~~~lr~~la~~l~~g~~~~~--~v~~ 100 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFAS-------SIA-RLSSPTTCRGYGPD---FGLPALRQKLSEDFYRGFVDAK--EIFI 100 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHH-------HHH-HHTSSSCCCCCCCT---TCCHHHHHHHHHTTSTTSSCGG--GEEE
T ss_pred ceEeccCCCCCCCCCHHHHHHHHH-------HHh-cccccccccCCCCC---CCCHHHHHHHHHHHHcCCCCHH--HEEE
Confidence 48999998775 456777776533 121 1110 0123221 2245799999999 47 6655 5999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE-EEEEeccCCCCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK-VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae-V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+|+|+.++...+ .+|++|++..- .+. .+...++..|++ +..+|++.. +.+..+ +++ .+
T Consensus 101 ~~G~~~al~~~~~~~--~~gd~Vl~~~p-~y~---~~~~~~~~~g~~~~~~~~~~~~-~~~~~~-l~~----------~~ 162 (400)
T 3asa_A 101 SDGAKVDLFRLLSFF--GPNQTVAIQDP-SYP---AYLDIARLTGAKEIIALPCLQE-NAFFPE-FPE----------DT 162 (400)
T ss_dssp ESCHHHHHHHHHHHH--CSSCEEEEEES-CCH---HHHHHHHHTTCSEEEEEECCGG-GTTCCC-CCT----------TC
T ss_pred ccChHHHHHHHHHHc--CCCCEEEECCC-CcH---HHHHHHHHcCCcceEecccchh-cCcccC-hhh----------cc
Confidence 999999999987654 57899876532 233 233455667988 998987642 112211 111 03
Q ss_pred CceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCCC-CccCCCCCCC----CcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPKD-MDSLGLSLFR----PDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~~-mipLDLs~l~----~DFlv~S~HK~fG~~P 370 (872)
++++|.++..+|.||.++|.+. ++.|+++|+++++|.++. .... ..+..+..++ .++++.|++|+|| +
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g--~ 240 (400)
T 3asa_A 163 HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG--F 240 (400)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT--T
T ss_pred CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC--C
Confidence 5789999999999999999752 456789999999999986 3211 0234444432 4599999999998 3
Q ss_pred Cc--eEEEEEeCCCc
Q 002866 371 TG--FGCLLIKKSVM 383 (872)
Q Consensus 371 tG--vG~LyVRk~~i 383 (872)
.| +|+++++++..
T Consensus 241 ~GlriG~~~~~~~~~ 255 (400)
T 3asa_A 241 AGIRLGWTVIPQELT 255 (400)
T ss_dssp TTCCCEEEECCTTCB
T ss_pred cchheeEEeeChhhc
Confidence 46 79999877654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=141.21 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.+.|++|++++|++ .|+||+|+|+|+.+++.++. +|++|++.. ..|.++.. .++..|++++.++++.
T Consensus 52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~-~~~~~~~~---~~~~~G~~~~~v~~~~ 121 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPS-MTFAATPH---ALRWIGLTPVFADIDP 121 (424)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEES-SSCTHHHH---HHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECC-CccHHHHH---HHHHcCCEEEEEecCC
Confidence 45678999999999983 49999999999999999874 578887663 34555543 3456799999999986
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCC-
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR- 354 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~- 354 (872)
.++.++.++|+++|.. ++++|.+. |.||...+++ +++.|+++|+++++|+++..|. .++...++
T Consensus 122 ~~~~~d~~~l~~~i~~--------~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~---~~~~~~~~~ 187 (424)
T 2po3_A 122 DTGNLDPDQVAAAVTP--------RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGC---AVDGRPAGS 187 (424)
T ss_dssp TTSSBCHHHHGGGCCT--------TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTS
T ss_pred CcCCcCHHHHHHhhCc--------CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCC---eECCeeccc
Confidence 4577899988776642 57888874 4899999997 5577899999999999998764 12222222
Q ss_pred -CcEEEEccc--ccCCCCCCceEEEEEe-CCCccccc
Q 002866 355 -PDFIITSFY--RVFGFDPTGFGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 355 -~DFlv~S~H--K~fG~~PtGvG~LyVR-k~~i~~L~ 387 (872)
+|++++|+| |+++ |-..|+++.+ +++++.+.
T Consensus 188 ~~di~~~S~sk~K~l~--~~~~G~~v~~~~~l~~~l~ 222 (424)
T 2po3_A 188 LGDAEVFSFHATKAVN--AFEGGAVVTDDADLAARIR 222 (424)
T ss_dssp SSSEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHH
T ss_pred ccCEEEEeCCCCCCcc--CCCCeEEEeCCHHHHHHHH
Confidence 689999998 7777 4356777776 45555554
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=137.29 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=139.2
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CC--CCCCCcEEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NI--PENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA--~~dEY~VVF 221 (872)
.++.|+.+...+ .|+.+++++.+. + .. ...|+.+. ...+.|+.||+++ |+ +++ .|+|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~-------~-~~---~~~y~~~~---g~~~lr~~la~~l~~~~g~~~~~~--~i~~ 87 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNH-------T-HS---LNIYPKSA---FEESLRAAQRGFFKRRFKIELKEN--ELIS 87 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTT-------G-GG---GGSCCCTT---CCHHHHHHHHHHHHHHHSCCCCGG--GEEE
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHh-------h-hh---cCCCCCCC---CCHHHHHHHHHHHHHHhCCCCCHH--HEEE
Confidence 467777666543 567777765431 1 11 12344432 1235677777766 87 444 6999
Q ss_pred eCCHHHHHHHHHhhCCCCC--CCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESYPFHT--NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~--Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|+|+|+.+++..+ .++ |++|++..- .|. .+...++..|+++..+|++... .++. +|++.+..
T Consensus 88 t~g~~~al~~~~~~~-~~~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~~~~~~~~-~~~~-~l~~~~~~------- 153 (376)
T 3ezs_A 88 TLGSREVLFNFPSFV-LFDYQNPTIAYPNP-FYQ---IYEGAAKFIKAKSLLMPLTKEN-DFTP-SLNEKELQ------- 153 (376)
T ss_dssp ESSSHHHHHHHHHHH-TTTCSSCEEEEEES-CCT---HHHHHHHHTTCEEEEEECCGGG-TSCC-CCCHHHHH-------
T ss_pred CcCcHHHHHHHHHHH-cCCCCCCEEEEecC-CcH---hHHHHHHHcCCEEEEcccCCCC-Ccch-hHHhhhcc-------
Confidence 999999999999887 467 899876532 233 3344567789999999987642 2333 56666653
Q ss_pred CCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCC-CccCCCC---------CCCCcEEEEccccc
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKD-MDSLGLS---------LFRPDFIITSFYRV 365 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~-mipLDLs---------~l~~DFlv~S~HK~ 365 (872)
++++|.++..+|.||.++|.+. ++.|+++|+++++|.++..... -.+..+. ..+.++++.|++|+
T Consensus 154 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 232 (376)
T 3ezs_A 154 -EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKR 232 (376)
T ss_dssp -HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhc
Confidence 3789999999999999999753 3457899999999999865210 0012221 45788999999999
Q ss_pred CCCCCCceEEEEEeCCCccccc
Q 002866 366 FGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 366 fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
||.+..++|+++.++++++.+.
T Consensus 233 ~g~~G~r~G~~~~~~~~~~~~~ 254 (376)
T 3ezs_A 233 SSAPGLRSGFIAGDSRLLEKYK 254 (376)
T ss_dssp TTCGGGCCEEEEECHHHHHHHH
T ss_pred cCCccceeEEEeeCHHHHHHHH
Confidence 9832234788888776665543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=140.01 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=140.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVFTs 223 (872)
-+|+|..+.+|.++.+.+++.+ .+... ....|+.+. -..+.|+.|+++++. +++...|+||+
T Consensus 57 G~y~d~~~~~~~~~~v~~a~~~-------~~~~~--~~~~Y~~~~---g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~ 124 (420)
T 4f4e_A 57 GVYTNEDGKIPLLRAVRDAEKA-------RVEAG--LPRGYLPID---GIAAYDASVQKLLLGDDSPLIAAGRVVTAQAL 124 (420)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHH-------HHHTC--CCCCCCCTT---CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred eeeECCCCCccCcHHHHHHHHH-------HhccC--CCCCCCCCC---CcHHHHHHHHHHhcCCCccccccCceEEEECC
Confidence 4688998999988888887532 12110 011233221 235788889988854 33311599999
Q ss_pred CHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec-cCCCCccCHHHHHHHHhhhhccCCCCC
Q 002866 224 SRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-KWPTLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 224 nATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-d~p~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
|+|+|+++++..+. +.+||+|++..- .+. .....++..|+++..+|. +..+..++.++|++.|... .++
T Consensus 125 G~t~al~~~~~~~~~~~~gd~Vlv~~p-~~~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~ 195 (420)
T 4f4e_A 125 GGTGALKIGADFLRTLNPKAKVAISDP-SWE---NHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY-----EPG 195 (420)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEES-CCH---HHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC-----CTT
T ss_pred ccHHHHHHHHHHHHHhCCCCEEEEeCC-CcH---hHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC-----CCC
Confidence 99999999854321 467899876532 223 334456678999999998 3335678999999998632 246
Q ss_pred ceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC-C----CccC-CC-CCCCCcEEEEcccccCCCCC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-D----MDSL-GL-SLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~----mipL-DL-s~l~~DFlv~S~HK~fG~~P 370 (872)
++++.++..+|.||..+|.+ +++.|+++|+++++|.+..... + ..++ .+ ...+.++++.|++|.|| +
T Consensus 196 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--~ 273 (420)
T 4f4e_A 196 TIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS--L 273 (420)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT--C
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc--C
Confidence 89999999999999999975 2356789999999999953221 0 0000 00 12456799999999998 5
Q ss_pred Cc--eEEEEE
Q 002866 371 TG--FGCLLI 378 (872)
Q Consensus 371 tG--vG~LyV 378 (872)
.| +|++++
T Consensus 274 ~G~RiG~~~~ 283 (420)
T 4f4e_A 274 YGERVGALSI 283 (420)
T ss_dssp GGGCEEEEEE
T ss_pred cCCCcEEEEE
Confidence 57 888875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=143.24 Aligned_cols=204 Identities=15% Similarity=0.077 Sum_probs=136.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEE--
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVF-- 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVF-- 221 (872)
-.|||+++.++.++.+.+++.+ ..... .....|+.+ ....+.|+.|+++++. +++ .|+|
T Consensus 37 g~~~d~~~~~~~~~~v~~a~~~-------~~~~~-~~~~~y~~~---~g~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~ 103 (412)
T 1yaa_A 37 GAYRDDNGKPWVLPSVKAAEKL-------IHNDS-SYNHEYLGI---TGLPSLTSNAAKIIFGTQSDALQED--RVISVQ 103 (412)
T ss_dssp CCCBCTTSCBCCCHHHHHHHHH-------HHTCT-TCCCCCCCT---TCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEE
T ss_pred eeeeCCCCCCCCcHHHHHHHHh-------hhcCc-ccccCCCCC---CCcHHHHHHHHHHHhcCCCCCCCcc--eEEEEe
Confidence 4688988888888888876421 01110 000123221 1245799999999842 455 4999
Q ss_pred eCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec-cCCCCccCHHHHHHHHhhhhccCCC
Q 002866 222 TVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-KWPTLKLCSTDLRKQISSKKRRKKD 299 (872)
Q Consensus 222 TsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-d~p~g~Id~edLe~~I~~~~rr~~~ 299 (872)
|+|+|+|+++++..+ .+.+|++|++..- .|... ...++..|+++..+|. +..+..++.++|++++... .
T Consensus 104 t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p-~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~ 174 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKFFPDKLVYLSKP-TWANH---MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA-----P 174 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEES-CCTTH---HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS-----C
T ss_pred ccchHhHHHHHHHHHHHhCCCCEEEEeCC-CCccH---HHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC-----C
Confidence 999999999874321 1357898876532 23333 3445667999999998 4335678999999988642 1
Q ss_pred CCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC-CCC-----CccC-CCCCCC----CcEEEEcccc
Q 002866 300 SAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG-PKD-----MDSL-GLSLFR----PDFIITSFYR 364 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a-G~~-----mipL-DLs~l~----~DFlv~S~HK 364 (872)
+.+.++++++.+|.||.++|.+ +++.|+++|+++++|.++.. ..+ ..++ ++.... .++++.|++|
T Consensus 175 ~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 254 (412)
T 1yaa_A 175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254 (412)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCC
Confidence 2367777799999999999875 34567899999999999742 110 0122 222223 3688999999
Q ss_pred cCCCCCCc--eEEEE
Q 002866 365 VFGFDPTG--FGCLL 377 (872)
Q Consensus 365 ~fG~~PtG--vG~Ly 377 (872)
.|| |.| +|+++
T Consensus 255 ~~~--~~GlriG~~~ 267 (412)
T 1yaa_A 255 NAG--MYGERVGCFH 267 (412)
T ss_dssp TSC--CGGGCEEEEE
T ss_pred CCC--CcCCcceEEE
Confidence 998 678 69888
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=156.66 Aligned_cols=178 Identities=11% Similarity=0.011 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++|+.+|+++|++. .+++|+|+|+|+..++.++ .++||+||+.. ..|.++... .++..|+++++++...
T Consensus 173 ~~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al-~~pGD~VLv~~-~~H~S~~~~--~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSAL-VSNGDLVLFDR-NNHKSVYNS--ALAMAGGRPVYLQTNR 245 (730)
T ss_dssp THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEET-TCCHHHHHH--HTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHh-cCCCCEEEEcC-CchHHHHHH--HHHHCCCEEEEEeCCc
Confidence 357899999999999963 4888888889999999887 47899988764 457776542 1345799999887643
Q ss_pred CC----CccCHHHH-----HHHHhhhhcc-CCCCCc-eEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCC--
Q 002866 277 PT----LKLCSTDL-----RKQISSKKRR-KKDSAA-GLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGP-- 342 (872)
Q Consensus 277 p~----g~Id~edL-----e~~I~~~~rr-~~~~~T-~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG-- 342 (872)
+. +.++.++| +++|.....+ ..+.++ ++++++.- |.+|.++|++ +++.|+++|+++++|+|+..+
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence 21 34678888 7777531000 001112 78888875 6799999998 557889999999999998642
Q ss_pred CC-----CccCCCCCCCCc----EEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 343 KD-----MDSLGLSLFRPD----FIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 343 ~~-----mipLDLs~l~~D----Flv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
.. ..++++..+++| +++.|+||++++ |.|.|+++++++.+
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l 373 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHI 373 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGG
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhh
Confidence 10 013555556888 999999999998 89999999998753
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=143.34 Aligned_cols=178 Identities=12% Similarity=0.174 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 199 EHDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 199 ieeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
..+.|++||++++ ++++ .|+||+|+|+|+.+++..+ .++|++|++..- .|..... ..+...|+++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~--~i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p-~y~~~~~--~~~~~~g~~~~ 158 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSP-YYPAFNR--DLRWRTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESS-CCTTHHH--HTTTTTCCEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChh--hEEEccChHHHHHHHHHHh-CCCCCeEEEccC-CCcchHH--HHHHhcCCEEE
Confidence 3578899999887 6665 5999999999999999887 368999887633 3343322 12235799999
Q ss_pred EEeccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc---HH-HHHHHHHCCcEEEeeccccCCC-C
Q 002866 271 SAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS---YQ-WMALAQQNHWHVLLDAGSLGPK-D 344 (872)
Q Consensus 271 ~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P---Le-~I~~Are~G~~VLVDAAQ~aG~-~ 344 (872)
.+|.+.. +..++.++|+++|..... ..+++++|.++..+|.||.++| ++ +++.|+++|+++++|.++.... .
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 236 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENAQK--SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFD 236 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHH--TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCS
T ss_pred EeecCCccCCcCCHHHHHHHHHHHHh--cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccC
Confidence 9988642 235789999988864211 1236899999999999999999 65 4567789999999999986521 0
Q ss_pred -CccCCCCC---------CCCc--EEEEcccccCCCCCCc--eEEEEE-eCCCcccc
Q 002866 345 -MDSLGLSL---------FRPD--FIITSFYRVFGFDPTG--FGCLLI-KKSVMGSL 386 (872)
Q Consensus 345 -mipLDLs~---------l~~D--Flv~S~HK~fG~~PtG--vG~LyV-Rk~~i~~L 386 (872)
....++.. +++| +++.|+||+||. .| +|++++ ++.+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~--~Glr~G~~~~~~~~~~~~~ 291 (428)
T 1iay_A 237 TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGL--PGFRVGIIYSFNDDVVNCA 291 (428)
T ss_dssp SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSC--GGGCEEEEEESCHHHHHHH
T ss_pred CCCccCHHHhccccccccCCCCcEEEEecchhhcCC--CCceEEEEEeCCHHHHHHH
Confidence 00112211 2278 899999999983 37 599998 45555544
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=135.53 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHH-HHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQS-AKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~-AkrkGaeV~~Vpv 274 (872)
...+.+|+.+++++|++. ..++|.|+|+|+.+++..+ .++|++|++.. ..|.++. ..... ....++++..+++
T Consensus 78 ~~~~~a~~~~~~~~~~~~---~~v~~~~Gs~a~~~al~~~-~~~gd~Vi~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGH---ANVQPHSGAQANGAVMLAL-AKPGDTVLGMS-LDAGGHLTHGAKPALSGKWFNALQYGV 152 (425)
T ss_dssp HHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEEC-C------------------CEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCC---ceeecCchHHHHHHHHHHc-cCCCCEEEEcc-cccccceecchhhhhcccceeeeecCC
Confidence 345567899999999864 2567999999999998887 68899988663 3344421 22111 1222345556666
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCC--ccCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDM--DSLGLS 351 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~m--ipLDLs 351 (872)
+..++.++.++|+++|... ++++|.+...+| |...+++ +.+.|+++|+++++|.+|+.|... .....-
T Consensus 153 ~~~~~~~d~~~l~~~i~~~-------~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~ 223 (425)
T 3ecd_A 153 SRDTMLIDYDQVEALAQQH-------KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV 223 (425)
T ss_dssp CTTTSSCCHHHHHHHHHHH-------CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG
T ss_pred CcccCccCHHHHHHHHhhc-------CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCch
Confidence 5445678999999998642 477888875444 8899997 456789999999999998654200 011111
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 352 LFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
-.+|++++|+||+|++ |.| |+++.++
T Consensus 224 -~~~di~~~s~sK~l~g-~~~-g~~~~~~ 249 (425)
T 3ecd_A 224 -EHAHVVTSTTHKTLRG-PRG-GFVLTND 249 (425)
T ss_dssp -GTCSEEEEESSGGGCC-CSC-EEEEESC
T ss_pred -hcCcEEEecCCcccCC-CCc-EEEEeCC
Confidence 1379999999999977 764 8888764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=143.30 Aligned_cols=200 Identities=13% Similarity=0.080 Sum_probs=129.9
Q ss_pred CceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHH
Q 002866 149 PKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGS 227 (872)
Q Consensus 149 ~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATe 227 (872)
+..|||+++..+. +.+++++.+ .+.. ...|+++. ...+.|++||+++|++ .|+||+|+|+
T Consensus 40 ~~~ylD~~~~~~~-~~v~~a~~~-----------~l~~~~~~y~~~~---~~~~l~~~la~~~~~~----~v~~t~~gt~ 100 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-GAVTQSMQA-----------AMMRGDEAYSGSR---SYYALAESVKNIFGYQ----YTIPTHQGRG 100 (467)
T ss_dssp GGCSEECSCCSSC-SCCCHHHHH-----------HTTSCCCCSSSCH---HHHHHHHHHHHHHCCS----EEEEEC--CC
T ss_pred CCeeEecccCCCc-HHHHHHHHH-----------HhccCcceeccCc---hhHHHHHHHHHHhCcC----cEEEcCCcHH
Confidence 4789999887766 344444321 1111 12355432 3567899999999873 4999999999
Q ss_pred HHHHHHhhCCCCC-----C----CeEEEecccCc-hhHHHHHHHHHHcCcEEEEEe------cc---CCCCccCHHHHHH
Q 002866 228 AFKLLAESYPFHT-----N----KKLLTMFDYES-QSVNWMAQSAKEKGAKVYSAW------FK---WPTLKLCSTDLRK 288 (872)
Q Consensus 228 ALnLVaeslpf~~-----G----d~ILT~~DhEH-nSVl~~~~~AkrkGaeV~~Vp------vd---~p~g~Id~edLe~ 288 (872)
|+.+++..+. ++ | |+|++. . .| .+...+. ...|+.+.... .+ ..++.++.++|++
T Consensus 101 A~~~al~~~~-~~~~~~~G~~~~d~Ii~~-~-~h~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 174 (467)
T 2oqx_A 101 AEQIYIPVLI-KKREQEKGLDRSKMVAFS-N-YFFDTTQGHS---QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp SHHHHHHHHH-HHHHHHHCCCTTTCEEEE-S-SCCHHHHHHH---HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHHHHHHHh-ccccccCCCCccceEEec-c-cccccchhhh---hccCcceeeccccccccCCCCCCccCCcCHHHHHH
Confidence 9998887752 44 6 887765 3 34 2222222 33466655431 11 0135689999999
Q ss_pred HHhhhhccCCCCCceEEEEeCccCcc-cchhcHH----HHHHHHHCCcEEEeeccccC-----------CCCCccCCCCC
Q 002866 289 QISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQ----WMALAQQNHWHVLLDAGSLG-----------PKDMDSLGLSL 352 (872)
Q Consensus 289 ~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe----~I~~Are~G~~VLVDAAQ~a-----------G~~mipLDLs~ 352 (872)
+|.... .++|++|++...+|.+ |.++|.+ +.+.|+++|+++++|++|+. +. ..+++..
T Consensus 175 ~i~~~~----~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~--~g~~~~~ 248 (467)
T 2oqx_A 175 GIEEVG----PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY--KDWTIEQ 248 (467)
T ss_dssp HHHHHC----GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG--TTSCHHH
T ss_pred HHHhcC----CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccc--cCccHHH
Confidence 997421 1248899999999998 8877753 34678999999999998866 32 1223322
Q ss_pred ------CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 353 ------FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 353 ------l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
..+|++++|+||+||. |.| |+++.++.
T Consensus 249 ~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~~~ 281 (467)
T 2oqx_A 249 ITRETYKYADMLAMSAKKDAMV-PMG-GLLCMKDD 281 (467)
T ss_dssp HHHHHGGGCSEEEEESSSTTCC-SSC-EEEEECSG
T ss_pred HhhhhhccCCeEEEecccccCC-CCc-eEEEecCh
Confidence 2478999999999997 656 66666666
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=140.82 Aligned_cols=176 Identities=11% Similarity=0.141 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhc----CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 199 EHDIKTRIMDHL----NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 199 ieeARerIA~lL----gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
..+.|+.||+++ |++ +...|+||+|+|+|+.+++..+ .++||.|++..- .+. .+...++..|+++..+|.
T Consensus 120 ~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p-~y~---~~~~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVF-LNPGDIVVVEAP-TYL---AALQAFNFYEPQYIQIPL 193 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHH-CCTTCEEEEEES-CCH---HHHHHHHTTCCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCC-ChH---HHHHHHHHcCCEEEEecc
Confidence 357888899888 984 2236999999999999999987 578999887532 233 334456668999999998
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEE-EEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCCC--Ccc
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLF-VFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPKD--MDS 347 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LV-a~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~~--mip 347 (872)
+. ++ ++.++|+++|..... ...++++| +++..+|.||.++|.+ +++.|+++|+++++|.++....- ...
T Consensus 194 ~~-~g-~d~~~L~~~l~~~~~--~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~ 269 (448)
T 3aow_A 194 DD-EG-MKVEILEEKLKELKS--QGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPE 269 (448)
T ss_dssp ET-TE-ECHHHHHHHHHHHHH--TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCC
T ss_pred CC-CC-CCHHHHHHHHhhhhc--cCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC
Confidence 76 34 899999998862100 01257886 6899999999999974 34677999999999999865310 011
Q ss_pred CCC---CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 348 LGL---SLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 LDL---s~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
..+ ...+.++++.|+.|+|| | | +|++++++++++.+.
T Consensus 270 ~~~~~~~~~~~vi~~~S~SK~~~--~-GlriG~v~~~~~l~~~l~ 311 (448)
T 3aow_A 270 KKIKALDNEGRVIYLGTFSKILA--P-GFRIGWMVGDPGIIRKME 311 (448)
T ss_dssp CCTGGGCTTSCEEEEEESTTTTC--G-GGCCEEEEECHHHHHHHH
T ss_pred cCHHhcCCCCCEEEEccchhhcc--c-cccEEEEEeCHHHHHHHH
Confidence 222 22356799999999998 3 7 899999887766554
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-12 Score=141.08 Aligned_cols=170 Identities=11% Similarity=0.109 Sum_probs=124.1
Q ss_pred HHHHHHHHHhc----CC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHL----NI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lL----gA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||+++ |. +++ .|+||+|+|+|+.+++.++ ..+|++|++..- .|.... ..++..|+++..+|
T Consensus 98 ~~lr~~ia~~l~~~~g~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p-~y~~~~---~~~~~~g~~~~~v~ 170 (447)
T 3b46_A 98 PSLINSLIKLYSPIYNTELKAE--NVTVTTGANEGILSCLMGL-LNAGDEVIVFEP-FFDQYI---PNIELCGGKVVYVP 170 (447)
T ss_dssp HHHHHHHHHHHTTTTTSCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCC-CchhHH---HHHHHcCCEEEEEe
Confidence 46778888876 43 443 6999999999999999987 578999876543 233333 34566799999999
Q ss_pred ccCC-----------CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeecc
Q 002866 274 FKWP-----------TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 274 vd~p-----------~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAA 338 (872)
++.. +..++.++|+++|. +++++|.+++.+|.||.++|. + +++.|+++|+++++|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~ 242 (447)
T 3b46_A 171 INPPKELDQRNTRGEEWTIDFEQFEKAIT--------SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEV 242 (447)
T ss_dssp EECCGGGGTSCBCSTTSEECHHHHHTTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCccccccccccccCcccCHHHHHHhhc--------cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEecc
Confidence 8643 24678888887664 258999999999999999874 3 34677999999999999
Q ss_pred ccCCC---CCccC-CC--CCCCCcEEEEcccccCCCCCCc--eEEEEE-eCCCcccc
Q 002866 339 SLGPK---DMDSL-GL--SLFRPDFIITSFYRVFGFDPTG--FGCLLI-KKSVMGSL 386 (872)
Q Consensus 339 Q~aG~---~mipL-DL--s~l~~DFlv~S~HK~fG~~PtG--vG~LyV-Rk~~i~~L 386 (872)
+.... ...++ .+ ...+.|+++.|++|+|| +.| +|++++ ++++++.+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~--~~G~riG~~~~~~~~l~~~l 297 (447)
T 3b46_A 243 YEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA--ATGWRIGWVLSLNAELLSYA 297 (447)
T ss_dssp TTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT--CTTSCCEEEECSCHHHHHHH
T ss_pred chhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC--CcchhhEEEEeCCHHHHHHH
Confidence 86421 00111 12 12478999999999998 457 999998 66665544
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=139.81 Aligned_cols=205 Identities=11% Similarity=-0.021 Sum_probs=137.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc-CC-----CCCCCcEEE--
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL-NI-----PENEYGLVF-- 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL-gA-----~~dEY~VVF-- 221 (872)
-+|+|..+..+.++.+.+++.+ ..........|+.. ....+.|++||+++ +. +++ .|+|
T Consensus 38 g~~~~~~~~~~~~~~v~~a~~~--------~~~~~~~~~~y~~~---~g~~~lr~~la~~~~~~~~~~~~~~--~v~~~~ 104 (412)
T 1ajs_A 38 GAYRTDDCQPWVLPVVRKVEQR--------IANNSSLNHEYLPI---LGLAEFRTCASRLALGDDSPALQEK--RVGGVQ 104 (412)
T ss_dssp CCCCCTTSCCCCCHHHHHHHHH--------HHTCTTCCCCCCCT---TCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEE
T ss_pred ceecCCCCCccccHHHHHHHHH--------hhhChhhccCCCCC---CCCHHHHHHHHHHHhcCCCCccCCC--cEEEEE
Confidence 4567776667777777776432 11000011123321 12458999999999 53 555 4999
Q ss_pred eCCHHHHHHHHHhhCC-CCCC-----CeEEEecccCchhHHHHHHHHHHcCcE-EEEEeccC-CCCccCHHHHHHHHhhh
Q 002866 222 TVSRGSAFKLLAESYP-FHTN-----KKLLTMFDYESQSVNWMAQSAKEKGAK-VYSAWFKW-PTLKLCSTDLRKQISSK 293 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~G-----d~ILT~~DhEHnSVl~~~~~AkrkGae-V~~Vpvd~-p~g~Id~edLe~~I~~~ 293 (872)
|+|+|+|+.+++..+. +.+| ++|++..- .|.. +...++..|++ +..+|.+. .+..++.++|++++...
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p-~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 180 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSP-TWEN---HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA 180 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEES-CCTH---HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCC-CcHH---HHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC
Confidence 9999999999864321 3578 88876532 2232 34456668999 99998842 24568999999988642
Q ss_pred hccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccc-cCCCC-----CccCC-CCC-CCCcEEEEc
Q 002866 294 KRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGS-LGPKD-----MDSLG-LSL-FRPDFIITS 361 (872)
Q Consensus 294 ~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ-~aG~~-----mipLD-Ls~-l~~DFlv~S 361 (872)
.+++.+++++..+|.||.++|.+ +++.|+++|+++++|.++ ..+.. ..++. +.. ..-++++.|
T Consensus 181 -----~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412)
T 1ajs_A 181 -----PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412)
T ss_dssp -----CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred -----CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence 23578999999999999999875 345678999999999994 33321 01121 211 123489999
Q ss_pred ccccCCCCCCc--eEEEEE
Q 002866 362 FYRVFGFDPTG--FGCLLI 378 (872)
Q Consensus 362 ~HK~fG~~PtG--vG~LyV 378 (872)
++|.|| |.| +|++++
T Consensus 256 ~sK~~~--~~G~riG~~~~ 272 (412)
T 1ajs_A 256 FSKNFG--LYNERVGNLTV 272 (412)
T ss_dssp CTTTSC--CGGGCEEEEEE
T ss_pred cccccC--CCCcceEEEEE
Confidence 999998 668 899998
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=138.50 Aligned_cols=201 Identities=11% Similarity=0.046 Sum_probs=136.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHH-hhccCcCcCCCchHHHHHHHHHHHHHhc-CCC-----CCCCcEEE-
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITA-NLSNHALYGGAEKGTVEHDIKTRIMDHL-NIP-----ENEYGLVF- 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~-nL~~~~~ygNpsS~~~ieeARerIA~lL-gA~-----~dEY~VVF- 221 (872)
-+|+|+.+.+++.+.+.+++. .+.. .......|..+ .-+.+.|+.|++++ |++ ++ .|+|
T Consensus 57 g~~~d~~~~~~v~~av~~a~~--------~~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~l~g~~~~~~~~~--~i~~~ 123 (448)
T 3meb_A 57 GAYRDESGKPWILPAVKEAEA--------IISSDLSKYNKEYPPV---AGFPLFLEAAQFLMFGKDSKAAQEG--RIASC 123 (448)
T ss_dssp CCCCCTTSCCCCCHHHHHHHH--------HHHHCTTTTCCSCCCT---TCCHHHHHHHHHHHHCTTCHHHHTT--CEEEE
T ss_pred ccccCCCCCEechHHHHHHHH--------HHhhcccCCCCCCCCC---cchHHHHHHHHHHhcCCCccccCcC--cEEEE
Confidence 579999999998888877632 1220 00001123221 12457999999998 876 44 5999
Q ss_pred -eCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHH----HcCcEEEEEec-cCC-CCccCHHHHHHHHhhh
Q 002866 222 -TVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAK----EKGAKVYSAWF-KWP-TLKLCSTDLRKQISSK 293 (872)
Q Consensus 222 -TsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~Ak----rkGaeV~~Vpv-d~p-~g~Id~edLe~~I~~~ 293 (872)
|+|+|+|+++++..+ -+.+|++|++..- .|.... ..++ ..|+++..+|. +.. ++.++.++|++.|...
T Consensus 124 ~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p-~~~~~~---~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~ 199 (448)
T 3meb_A 124 QSLSGTGSLHIGFEFLHLWMPKAEFYMPST-TWPNHY---GIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA 199 (448)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESS-CCTHHH---HHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS
T ss_pred ECCcHHHHHHHHHHHHHHhCCCCEEEECCC-CCHhHH---HHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC
Confidence 999999999854321 1357899887632 233333 3344 67999999998 543 4788999999998742
Q ss_pred hccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc-ccCCCCCccCC-----C----CCCCCcEEE
Q 002866 294 KRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG-SLGPKDMDSLG-----L----SLFRPDFII 359 (872)
Q Consensus 294 ~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA-Q~aG~~mipLD-----L----s~l~~DFlv 359 (872)
..++.++.++..+|.||+.+|.+. ++.|+++|+++++|.+ +..+.. +++ + ....-.+++
T Consensus 200 -----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 200 -----PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG--SFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp -----CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS--CHHHHTHHHHHHHHTTCCEEEE
T ss_pred -----CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC--CcccCchhHHHHhhcCCcEEEE
Confidence 235789999999999999999853 3567899999999999 434331 211 1 112234779
Q ss_pred EcccccCCCCCCc--eEEE
Q 002866 360 TSFYRVFGFDPTG--FGCL 376 (872)
Q Consensus 360 ~S~HK~fG~~PtG--vG~L 376 (872)
.|++|.|| +.| +|++
T Consensus 273 ~S~SK~~g--~~G~RiG~l 289 (448)
T 3meb_A 273 QSFSKNFG--LYGERIGCL 289 (448)
T ss_dssp EECTTTSC--CGGGCCEEE
T ss_pred ecccccCC--Cccccceee
Confidence 99999998 457 7877
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=141.22 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH--HHHHhhCCC-CC----------CCeEEEecccCchhHHHHHHHHHHc
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAF--KLLAESYPF-HT----------NKKLLTMFDYESQSVNWMAQSAKEK 265 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeAL--nLVaeslpf-~~----------Gd~ILT~~DhEHnSVl~~~~~Akrk 265 (872)
+.+.|+.||++++++++ .|+||+|+|+|+ ++++..+.. .+ |++|++.. ++.......++..
T Consensus 80 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~----p~y~~~~~~~~~~ 153 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV----PGYDRHFSITERF 153 (427)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE----SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC----CCcHHHHHHHHHc
Confidence 45799999999999876 599999999999 577776521 13 88887652 2223344556778
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEE-eCccCcccchhcHHH----HHHH-HHCCcEEEeeccc
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVF-PVQSRVTGAKYSYQW----MALA-QQNHWHVLLDAGS 339 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~-p~vSNvTG~i~PLe~----I~~A-re~G~~VLVDAAQ 339 (872)
|++++.+|++.. + ++.++|++++.. +++++|.+ |..+|.||+++|.+. ++.| +++|+++++|.++
T Consensus 154 g~~~~~v~~~~~-g-~d~~~l~~~l~~-------~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y 224 (427)
T 3ppl_A 154 GFEMISVPMNED-G-PDMDAVEELVKN-------PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAY 224 (427)
T ss_dssp TCEEEEEEEETT-E-ECHHHHHHHTTS-------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred CCEEEEeCCCCC-C-CCHHHHHHHHhc-------CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 999999999863 4 899999988842 25777764 589999999999972 3456 8899999999997
Q ss_pred cC----CCCCccCCCC-------CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 340 LG----PKDMDSLGLS-------LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 340 ~a----G~~mipLDLs-------~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.. +....++++. ..+.++++.|++|++++ ..++|+++.++++++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-G~r~G~~~~~~~l~~~~~ 282 (427)
T 3ppl_A 225 AVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLA-GAGVSFFLTSAENRKWYT 282 (427)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCT-TSSCEEEECCHHHHHHHH
T ss_pred cccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCc-CccEEEEEcCHHHHHHHH
Confidence 53 1100122222 34678999999999554 567888887776655443
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=135.57 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=123.1
Q ss_pred HHHHHHHHh----cCCCCCC-------CcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 201 DIKTRIMDH----LNIPENE-------YGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 201 eARerIA~l----LgA~~dE-------Y~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
+.|+.|+++ .|++.++ ..|+||+|+|+|+.+++.++ .++||+|++..- .+. .+...++..|+++
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p-~y~---~~~~~~~~~g~~~ 156 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-INPGDNVLLDEP-AYS---GTLQSLHPLGCNI 156 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-CCTTCEEEEESS-CCH---HHHHHHGGGTCEE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCC-CcH---HHHHHHHHcCCEE
Confidence 345555554 5876421 26999999999999999987 478999887632 233 3445567789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhcc----CCCCCceEEEE-eCccCcccchhcHH----HHHHHHHCCcEEEeecccc
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRR----KKDSAAGLFVF-PVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr----~~~~~T~LVa~-p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~ 340 (872)
..+|++. + .++.++|++++.....+ ....++++|.+ +..+|.||.++|.+ +++.|+++|+++++|.++.
T Consensus 157 ~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~ 234 (425)
T 2r2n_A 157 INVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYY 234 (425)
T ss_dssp EEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG
T ss_pred EEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 9999875 3 38899999988631000 00135777755 89999999999986 3456789999999999975
Q ss_pred ----CCCCCccCCCCC---CCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 341 ----GPKDMDSLGLSL---FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 341 ----aG~~mipLDLs~---l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.|. ....+.. .+.++++.|++|+||. -..+|++++++++++.+.
T Consensus 235 ~~~~~g~--~~~~~~~~~~~~~~i~~~s~SK~~~~-GlRiG~~~~~~~l~~~l~ 285 (425)
T 2r2n_A 235 FLQFNKF--RVPTFLSMDVDGRVIRADSFSKIISS-GLRIGFLTGPKPLIERVI 285 (425)
T ss_dssp GGBSSSS--CCCCTGGGCTTSCEEEEEESTTTTCS-TTCCEEEEEEHHHHHHHH
T ss_pred cccCCCC--CCCCccccCCCCCEEEEccchhhccC-ccceEEEecCHHHHHHHH
Confidence 232 1223322 3456999999999982 122799999887665554
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-12 Score=138.19 Aligned_cols=170 Identities=12% Similarity=0.165 Sum_probs=122.5
Q ss_pred HHHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHH-HcCcEEE
Q 002866 200 HDIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAK-EKGAKVY 270 (872)
Q Consensus 200 eeARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-rkGaeV~ 270 (872)
.+.|++||++++ ++++ .|+||+|+|+|+.+++..+ .++|+.|++..- .|.+... .++ ..|+++.
T Consensus 89 ~~l~~~la~~~~~~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p-~~~~~~~---~~~~~~g~~~~ 161 (435)
T 3piu_A 89 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTP-YYPGFDR---DLKWRTGVEIV 161 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHHH---HTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCC-ccccHHH---HHHHhcCCEEE
Confidence 578999999988 5555 5999999999999999987 478899876532 3444432 233 4799999
Q ss_pred EEeccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----
Q 002866 271 SAWFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG---- 341 (872)
Q Consensus 271 ~Vpvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a---- 341 (872)
.++++... ..++.++|+++|..... ...++++|.++..+|.||.++|.+ +++.|+++|+++++|.++..
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~ 239 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEK--RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS 239 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHH--TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHh--cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 99987532 34789999999875321 234689999999999999999985 23567899999999999865
Q ss_pred CCCCccCCCCCC-------------CCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 342 PKDMDSLGLSLF-------------RPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 342 G~~mipLDLs~l-------------~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+. ....+..+ +..+++.|++|.||.+...+|++++++
T Consensus 240 ~~--~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~ 289 (435)
T 3piu_A 240 SP--SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND 289 (435)
T ss_dssp SS--CCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESC
T ss_pred CC--CCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCC
Confidence 22 11222111 122889999999983122379998744
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=139.27 Aligned_cols=172 Identities=11% Similarity=0.003 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchh-HH-HHHHHHHHcCcEEEEEeccC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQS-VN-WMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnS-Vl-~~~~~AkrkGaeV~~Vpvd~ 276 (872)
.+-+|+++++++|++. ..+++.++|+|+..++.++ .++||+|++.. ..|.+ +. .........++.+..++++.
T Consensus 93 e~~a~~~la~~~g~~~---~~v~~~sGs~a~~~a~~~~-~~~Gd~Vl~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (447)
T 3h7f_A 93 ENLARDRAKALFGAEF---ANVQPHSGAQANAAVLHAL-MSPGERLLGLD-LANGGHLTHGMRLNFSGKLYENGFYGVDP 167 (447)
T ss_dssp HHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEEC-GGGTCCGGGTCTTSHHHHSSEEEEECCCT
T ss_pred HHHHHHHHHHHcCCCc---eEEEeCCHHHHHHHHHHHh-cCCCCEEEecC-cccccccchhhhhhhcCCeeEEEEcCcCc
Confidence 3345599999999964 3554778899999888876 57899988663 22333 11 11001122356777777765
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCC---CCccCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPK---DMDSLGLSL 352 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~---~mipLDLs~ 352 (872)
.++.++.++|++++... +++++.+...+|.++. |++. .+.|+++|+++++|.+|+.|. . ...+.-
T Consensus 168 ~~~~~d~~~l~~~i~~~-------~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~~- 236 (447)
T 3h7f_A 168 ATHLIDMDAVRATALEF-------RPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSPV- 236 (447)
T ss_dssp TTCSCCHHHHHHHHHHH-------CCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCST-
T ss_pred ccCCcCHHHHHHHHHhc-------CCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCCC-
Confidence 56779999999998642 3678888766776655 8975 567899999999999986541 0 111211
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
-.+|++++|+||+|++ |.| |+++.+++..+.+.+
T Consensus 237 ~~~di~~~s~sK~l~G-~~g-G~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 237 PHADVVSTTVHKTLGG-GRS-GLIVGKQQYAKAINS 270 (447)
T ss_dssp TTCSEEEEESSGGGCC-CSC-EEEEECGGGHHHHHH
T ss_pred CCCcEEEecCCcCCCC-CCe-EEEEECHHHHHHHhh
Confidence 2579999999999988 888 999998877666543
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=132.46 Aligned_cols=217 Identities=10% Similarity=-0.019 Sum_probs=138.2
Q ss_pred CceecccCCCC---CC----cHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCC-CCCCcE
Q 002866 149 PKVCLDYCGFG---LF----SYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIP-ENEYGL 219 (872)
Q Consensus 149 ~~IYLDyAAtg---p~----p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~-~dEY~V 219 (872)
+..|+|+++.. ++ ++.+++++.+ .+ .. ...++++. ......+.++++++++|++ ++ .|
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~-------~~-~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~--~v 107 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIE-------QM-QK---LAHAAANDFYNIPQLELAKKLVTYSPGNFQK--KV 107 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHH-------HH-TT---SCCCSCSCSCCHHHHHHHHHHHHHSSCSSCE--EE
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHH-------HH-hh---CccccccccCCHHHHHHHHHHHHhCCCCcCC--EE
Confidence 46799997654 33 6888887543 11 11 11122111 1234567888999999987 54 59
Q ss_pred EEeCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHH-----HHcC-----cEEEEEeccCCC----Cc----
Q 002866 220 VFTVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSA-----KEKG-----AKVYSAWFKWPT----LK---- 280 (872)
Q Consensus 220 VFTsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~A-----krkG-----aeV~~Vpvd~p~----g~---- 280 (872)
+||+|+|+|+.+++..+ .+. |++||+.....|.......... .+.| ..+..+|++... +.
T Consensus 108 ~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~ 186 (419)
T 2eo5_A 108 FFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYE 186 (419)
T ss_dssp EEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTT
T ss_pred EEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccc
Confidence 99999999999988753 222 7888876433455444333221 1112 357777764310 10
Q ss_pred -------cCHHHHH-HHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--
Q 002866 281 -------LCSTDLR-KQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD-- 344 (872)
Q Consensus 281 -------Id~edLe-~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~-- 344 (872)
++.++|+ ++|.... ...++++|.+..++|.||.+.| ++. .+.|+++|+++++|.+|. .+..
T Consensus 187 ~~~~~~~~~~~~l~~~~i~~~~---~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~ 263 (419)
T 2eo5_A 187 NPSELVNRVIEFIEDYIFVNLV---PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK 263 (419)
T ss_dssp CHHHHHHHHHHHHHHTHHHHTC---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred cchhhHHHHHHHHHHHHHhhcc---CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc
Confidence 3567888 7776310 0024788989888889999887 764 467799999999999986 4421
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCcccc
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSL 386 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L 386 (872)
+..++.....+|++++| |.||+ + .++|+++++++++ .+
T Consensus 264 ~~~~~~~~~~~d~~t~s--K~~~~-G~~riG~~~~~~~~~-~~ 302 (419)
T 2eo5_A 264 LFAIENFNTVPDVITLA--KALGG-GIMPIGATIFRKDLD-FK 302 (419)
T ss_dssp SSGGGGGTCCCSEEEEC--GGGGT-TTSCCEEEEEEGGGC-CC
T ss_pred hhhHHhcCCCCCEEEec--ccccC-CccceEEEEEchHhh-cC
Confidence 01233334578988666 98885 5 7899999998765 44
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.3e-12 Score=135.72 Aligned_cols=174 Identities=10% Similarity=0.089 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHH--HHHhhCCCC-C---------CCeEEEecccCchhHHHHHHHHHHcC
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAFK--LLAESYPFH-T---------NKKLLTMFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeALn--LVaeslpf~-~---------Gd~ILT~~DhEHnSVl~~~~~AkrkG 266 (872)
..+.|++||++++++++ .|+||+|+|+|++ +++.++... + |++|++..- .|. .+...++..|
T Consensus 72 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p-~y~---~~~~~~~~~g 145 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE--NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP-GYD---RHFLLLQTLG 145 (423)
T ss_dssp CHHHHHHHHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEES-CCH---HHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCC-CcH---HHHHHHHHcC
Confidence 45899999999999876 5999999999998 777765321 4 578776522 222 3344566679
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE-EeCccCcccchhcHHHH----HHH-HHCCcEEEeecccc
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV-FPVQSRVTGAKYSYQWM----ALA-QQNHWHVLLDAGSL 340 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa-~p~vSNvTG~i~PLe~I----~~A-re~G~~VLVDAAQ~ 340 (872)
++++.+|++.. + ++.++|+++|.. .+++++|. .+..+|.||.++|.+.+ +.| +++|+++++|.++.
T Consensus 146 ~~~~~v~~~~~-g-~d~~~l~~~l~~------~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~ 217 (423)
T 3ez1_A 146 FELLTVDMQSD-G-PDVDAVERLAGT------DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYR 217 (423)
T ss_dssp CEEEEEEEETT-E-ECHHHHHHHHHS------CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred CEEEeccCCCC-C-CCHHHHHHHHhh------CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence 99999999863 3 899999999852 23588885 56899999999999733 345 78999999999976
Q ss_pred CCC----C-CccCCC-------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 341 GPK----D-MDSLGL-------SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 341 aG~----~-mipLDL-------s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
... . ..+.++ ...+.++++.|++|++++ ..++|+++.++++++.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~-G~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 218 VHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFA-GAGLGFVASSEDNIRWLS 275 (423)
T ss_dssp SCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCS-SSSCEEEEECHHHHHHHH
T ss_pred hhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccC-CcceEEEEeCHHHHHHHH
Confidence 311 0 011122 134567999999997554 568999998887666554
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=134.61 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=134.0
Q ss_pred CceecccCCCCC-CcHHHHHHhhhcccccHHHHHHhhc---cCcCcCCCchHHHHHHHHHHHHHhc----CCCCCCCcEE
Q 002866 149 PKVCLDYCGFGL-FSYIQTLHYWESSTFSLSEITANLS---NHALYGGAEKGTVEHDIKTRIMDHL----NIPENEYGLV 220 (872)
Q Consensus 149 ~~IYLDyAAtgp-~p~~VieA~~e~~~F~ls~i~~nL~---~~~~ygNpsS~~~ieeARerIA~lL----gA~~dEY~VV 220 (872)
.+|+|..+...+ .|+.+++++.+ .+ ..+. ....|+.. ....+.|++|++++ +++++ .|+
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~-------~~-~~~~~~~~~~~y~~~---~g~~~lr~~ia~~~~~g~~~~~~--~i~ 136 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAK-------AA-AGLATREGYSGYGAE---QGQGALREAVASTFYGHAGRAAD--EIF 136 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHH-------HH-HGGGGSCCCCCSTTT---TCCHHHHHHHHHHHHTTTTCCGG--GEE
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHH-------HH-HhhccccCCCCCCCC---CCcHHHHHHHHHHHHcCCCCCHH--HEE
Confidence 378888876553 56777777533 12 1110 01123221 22457899999998 77765 599
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE----------EEEEeccCCC-CccCHHHHHHH
Q 002866 221 FTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK----------VYSAWFKWPT-LKLCSTDLRKQ 289 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae----------V~~Vpvd~p~-g~Id~edLe~~ 289 (872)
||+|+|+|+.++ ..+ +++||.|++..- .|.+.. ..++..|++ +..+|++..+ ...+.+
T Consensus 137 ~t~G~~~al~~~-~~l-~~~gd~Vl~~~p-~~~~~~---~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----- 205 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMM-FGSKPTVAVQDP-SYPVYV---DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLS----- 205 (449)
T ss_dssp EESCHHHHHHHH-HHH-HCSSSCEEEEES-CCTHHH---HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGG-----
T ss_pred EccCHHHHHHHH-HHH-hCCCCEEEEcCC-CChhHH---HHHHHcCCcccccccccceeEEEecccccCCcCChh-----
Confidence 999999999998 555 468999876532 233333 344556877 8888886431 122211
Q ss_pred HhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CCCCccCCCCCC----CCcE
Q 002866 290 ISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PKDMDSLGLSLF----RPDF 357 (872)
Q Consensus 290 I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l----~~DF 357 (872)
. .+++++|.++..+|.||.++|.+ +++.|+++|+++++|.++.. +. .+..+..+ ++++
T Consensus 206 --~------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i 275 (449)
T 3qgu_A 206 --K------AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAI 275 (449)
T ss_dssp --G------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEE
T ss_pred --H------cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEE
Confidence 1 13588999999999999999964 34567899999999999865 32 23333332 5679
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
++.|++|+||.+..++|+++++++.++
T Consensus 276 ~~~s~sK~~g~~G~r~G~~~~~~~~~~ 302 (449)
T 3qgu_A 276 ETCSFSKYAGFTGVRLGWTVVPKALKY 302 (449)
T ss_dssp EEEECSGGGTCTTCCCEEEECCTTCBC
T ss_pred EEecchhhcCCccceeEEEecCHHHHh
Confidence 999999999831234899998877654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=132.61 Aligned_cols=203 Identities=10% Similarity=0.053 Sum_probs=129.8
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|.++. ++.++.+++++.+ .+ .... ...+.-.....++.++++++++|. + .|+||
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~-------~~-~~~~---~~~~~~~~~~~~~l~~~la~~~g~--~--~v~~~ 103 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKD-------QA-EKLI---HCSNLFWNRPQMELAELLSKNTFG--G--KVFFA 103 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHH-------HH-HHCS---CCCTTSEEHHHHHHHHHHHHTTTS--C--EEEEE
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHH-------HH-Hhcc---cCccccCCHHHHHHHHHHHHhcCC--C--eEEEe
Confidence 4678998754 3346778777533 12 1111 111101135678899999999984 3 49999
Q ss_pred CCHHHHHHHHHhhCC-C----CC-CCeEEEecccCchhHHHHHHHHHHcCcE------------EEEEeccCCCCccCHH
Q 002866 223 VSRGSAFKLLAESYP-F----HT-NKKLLTMFDYESQSVNWMAQSAKEKGAK------------VYSAWFKWPTLKLCST 284 (872)
Q Consensus 223 snATeALnLVaeslp-f----~~-Gd~ILT~~DhEHnSVl~~~~~AkrkGae------------V~~Vpvd~p~g~Id~e 284 (872)
+|+|+|+.+++..+. + ++ +++|++.....|.+...+.. ..|.+ +..+|.+ +.+
T Consensus 104 ~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~---~~g~~~~~~~~~p~~~~~~~~~~~------d~~ 174 (397)
T 2ord_A 104 NTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT---ATGQPKYQKPFEPLVPGFEYFEFN------NVE 174 (397)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH---HSBCHHHHGGGCSCCTTEEEECTT------CHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh---ccCChhhccccCCCCCCeeEecCC------CHH
Confidence 999999999887752 1 03 35676553333454543322 23433 5555542 678
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccc-h---hcHH-HHHHHHHCCcEEEeecccc-CCCCCccCCCCCC--CCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGA-K---YSYQ-WMALAQQNHWHVLLDAGSL-GPKDMDSLGLSLF--RPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~-i---~PLe-~I~~Are~G~~VLVDAAQ~-aG~~mipLDLs~l--~~D 356 (872)
+|+++|.. ++++|.+...+|.||. . .+++ +++.|+++|+++++|.++. .+..-.++.+..+ .+|
T Consensus 175 ~l~~~l~~--------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (397)
T 2ord_A 175 DLRRKMSE--------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD 246 (397)
T ss_dssp HHHHHCCT--------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred HHHHHhhc--------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC
Confidence 88877742 5899999999999999 4 4555 4467899999999999986 2210002222222 389
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++ +++|+||+ +.++|+++++++.+ .+.
T Consensus 247 ~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~ 273 (397)
T 2ord_A 247 VL--TTAKGLGG-GVPIGAVIVNERAN-VLE 273 (397)
T ss_dssp EE--EECGGGGT-TSCCEEEEECSTTC-CCC
T ss_pred ee--eeccccCC-CcCeEEEEEchHhc-ccC
Confidence 77 55799985 55799999998865 443
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=133.75 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHH-HHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQS-AKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~-AkrkGaeV~~Vpvd~ 276 (872)
...+.+++||++.|++ .+++++++++|+.++ ..+ .++|++|++.....+.....+... +++.|+++..++.+
T Consensus 68 ~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 140 (400)
T 3nmy_A 68 TRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT- 140 (400)
T ss_dssp HHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-
T ss_pred HHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-
Confidence 3467889999999985 266667779999985 343 478999887644223333444444 66779999988764
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+.++|+++|.. +|++|.+...+|.+|.+.|++. .+.|+++|+++++|.++..|....+++ +++
T Consensus 141 -----d~~~l~~~i~~--------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~---~g~ 204 (400)
T 3nmy_A 141 -----DPAAFKAAIRA--------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLS---LGA 204 (400)
T ss_dssp -----SHHHHHHHCCT--------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGG---GTC
T ss_pred -----CHHHHHHHhcc--------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCC
Confidence 57888877742 5899999999999999999985 567899999999999987543112333 589
Q ss_pred cEEEEcccccCCCCC-CceEE
Q 002866 356 DFIITSFYRVFGFDP-TGFGC 375 (872)
Q Consensus 356 DFlv~S~HK~fG~~P-tGvG~ 375 (872)
|+++.|++|++|+ | ..+|.
T Consensus 205 div~~S~sK~l~g-~g~~~gG 224 (400)
T 3nmy_A 205 DLVVHSATKYLNG-HSDMVGG 224 (400)
T ss_dssp SEEEEETTTTTTC-SSSCCCE
T ss_pred cEEEecCccccCC-CCCccee
Confidence 9999999999986 4 23544
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-11 Score=128.11 Aligned_cols=176 Identities=11% Similarity=0.101 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh---hCCCCCCCeEEEecccCchhHHHHHHHHHHcCc------
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE---SYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA------ 267 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae---slpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa------ 267 (872)
....+.|++|+++++.+.. ..|+||+|+|+|+.+++. .+. .+| +|++.....|.....+... .|.
T Consensus 84 ~~~~~l~~~la~~~~~~~~-~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~---~g~~~~~~~ 157 (426)
T 1sff_A 84 EPYLELCEIMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAAT-KRS-GTIAFSGAYHGRTHYTLAL---TGKVNPYSA 157 (426)
T ss_dssp HHHHHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHH-TCC-EEEEETTCCCCSSHHHHHH---SSCCTTTTT
T ss_pred HHHHHHHHHHHHhCCcccc-cEEEEeCchHHHHHHHHHHHHHhh-CCC-eEEEECCCcCCCchHhhhh---cCCcccccc
Confidence 5677899999999943321 269999999999999877 442 344 6665533335545433322 232
Q ss_pred -------EEEEEeccC----CCCccCHHHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhc----HH-HHHHHHHCC
Q 002866 268 -------KVYSAWFKW----PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYS----YQ-WMALAQQNH 330 (872)
Q Consensus 268 -------eV~~Vpvd~----p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~P----Le-~I~~Are~G 330 (872)
.+..+|++. ..+.++.++|+++|.... ...++++|.+.. .+| ||.+.| ++ +++.|+++|
T Consensus 158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~ 233 (426)
T 1sff_A 158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA---APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHG 233 (426)
T ss_dssp TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC---CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc---CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcC
Confidence 266677753 122367888888886310 012477888854 566 997777 76 456789999
Q ss_pred cEEEeecccc-CCCC--CccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCccccc
Q 002866 331 WHVLLDAGSL-GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 331 ~~VLVDAAQ~-aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~~L~ 387 (872)
+++++|.++. .+.. ...++.....+|++ |+.|+|| | | +|++++++++++.+.
T Consensus 234 ~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~--~-GlriG~~~~~~~~~~~l~ 290 (426)
T 1sff_A 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIA--G-GFPLAGVTGRAEVMDAVA 290 (426)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGG--T-SSCCEEEEEEHHHHTTSC
T ss_pred CEEEEechhhccCcccchhhhhhcCCCCCEE--EEccccc--C-CCceEEEEEcHHHHhhhc
Confidence 9999999987 3210 01233334458877 5569998 5 7 699999987766554
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=130.25 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=138.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC--CCC-CCcEEEeCCHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI--PEN-EYGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA--~~d-EY~VVFTsnAT 226 (872)
-.|+|+.+..+.++.+.+++.+ + ..... ..|+.+. -..+.|++|++++.. .++ ...|++|+|+|
T Consensus 46 g~~~~~~~~~~~~~~v~~a~~~---~----~~~~~---~~y~~~~---g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 46 GAIHDEEGNLVFLKTVKEEYLS---L----SDSEH---VGYAPIA---GIPDFLCAAEKECFGNFRPEGHIRSIATAGGT 112 (418)
T ss_dssp SCCBCTTSCBCCCHHHHHHHHT---C----CHHHH---HSCCCTT---CCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred CcccCCCCCccccHHHHHHHHH---h----ccccc---CCCCCCC---ChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence 4567777777788888776432 1 00011 1233221 124678888886621 122 11599999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCce-EE
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAG-LF 305 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~-LV 305 (872)
+|+.+++.++ .++||+|++..- .+. .+...++..|++++.+|++..++.++.++|++++..... ++++ ++
T Consensus 113 ~al~~~~~~l-~~~gd~Vl~~~p-~~~---~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~----~~~~~~v 183 (418)
T 3rq1_A 113 GGIHHLIHNY-TEPGDEVLTADW-YWG---AYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA----KQTNVVV 183 (418)
T ss_dssp HHHHHHHHHH-SCTTCEEEEESS-CCT---HHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH----HCSEEEE
T ss_pred HHHHHHHHHh-cCCCCEEEECCC-Cch---hHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc----cCCCEEE
Confidence 9999999987 578999887632 222 233456778999999998655567899999998864210 1244 88
Q ss_pred EEeCc-cCcccchhcHHHH----HHHH------HCCcEEEeecccc-CCCCC---cc--CCCCCCCCc---EEEEccccc
Q 002866 306 VFPVQ-SRVTGAKYSYQWM----ALAQ------QNHWHVLLDAGSL-GPKDM---DS--LGLSLFRPD---FIITSFYRV 365 (872)
Q Consensus 306 a~p~v-SNvTG~i~PLe~I----~~Ar------e~G~~VLVDAAQ~-aG~~m---ip--LDLs~l~~D---Flv~S~HK~ 365 (872)
.++.. +|.||.++|.+.+ +.|+ ++|+++++|.++. ...+- .+ -.......| +++.|++|.
T Consensus 184 i~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 263 (418)
T 3rq1_A 184 IFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG 263 (418)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTT
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCC
Confidence 88877 8999999998743 3345 7999999999953 11100 01 112223445 788899999
Q ss_pred CCCCCCceEEEEE---eCCCccccc
Q 002866 366 FGFDPTGFGCLLI---KKSVMGSLQ 387 (872)
Q Consensus 366 fG~~PtGvG~LyV---Rk~~i~~L~ 387 (872)
||.+-..+|++++ .+++++.+.
T Consensus 264 ~~~~G~r~G~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 264 FTMYGQRVGAMIGISDDEEIADEFF 288 (418)
T ss_dssp TTCCSSCCEEEEEEESSHHHHHHHH
T ss_pred CcCcCCcceEEEEEeCCHHHHHHHH
Confidence 9841123788887 666655543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-11 Score=128.61 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=130.5
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhcc-C--cCcCCCchHHHHHHHHHHHHHhc----CCCCCCCcEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSN-H--ALYGGAEKGTVEHDIKTRIMDHL----NIPENEYGLV 220 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~-~--~~ygNpsS~~~ieeARerIA~lL----gA~~dEY~VV 220 (872)
++|+|..+... +.|+.+++++.+ .+. .+.. + ..|+.+ ....+.|++||+++ +++++ .|+
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~-------~~~-~~~~~~~~~~y~~~---~g~~~l~~~ia~~~~~~~~~~~~--~i~ 123 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAK-------KAH-ELSTIEGYSGYGAE---QGAKPLRAAIAKTFYGGLGIGDD--DVF 123 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHH-------HHH-HTTSTTTCCCCCCT---TCCHHHHHHHHHHHHTTTTCCGG--GEE
T ss_pred CeEEccCCCCCCCCCHHHHHHHHH-------HHh-cccccCCccCCCCC---CCCHHHHHHHHHHHHccCCCCcc--eEE
Confidence 47889888666 467788887543 121 1110 1 123221 12357888999986 77765 599
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcC---------cEEEEEeccCCC-CccCHHHHHHHH
Q 002866 221 FTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKG---------AKVYSAWFKWPT-LKLCSTDLRKQI 290 (872)
Q Consensus 221 FTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkG---------aeV~~Vpvd~p~-g~Id~edLe~~I 290 (872)
||+|+|+++.++. .+ +++||.|++.. ..|.+.....+.+...| .++..++++... ...+ +
T Consensus 124 ~t~G~~~al~~l~-~l-~~~gd~Vl~~~-p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---- 193 (432)
T 3ei9_A 124 VSDGAKCDISRLQ-VM-FGSNVTIAVQD-PSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD---L---- 193 (432)
T ss_dssp EESCHHHHHHHHH-HH-HCTTCCEEEEE-SCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC---G----
T ss_pred ECCChHHHHHHHH-HH-cCCCCEEEEeC-CCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC---h----
Confidence 9999999999864 33 36899987653 23455554444443333 367777775421 1122 1
Q ss_pred hhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCC-CCccCCCCC----CCCcEEEEc
Q 002866 291 SSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPK-DMDSLGLSL----FRPDFIITS 361 (872)
Q Consensus 291 ~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~-~mipLDLs~----l~~DFlv~S 361 (872)
.. .+++++|.++..+|.||.++|.+. ++.|+++|+++++|.++.... +..+..+.. .+.++++.|
T Consensus 194 ~~------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S 267 (432)
T 3ei9_A 194 ST------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETAS 267 (432)
T ss_dssp GG------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEE
T ss_pred hh------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEec
Confidence 11 235889999999999999999753 345789999999999986221 001223322 246799999
Q ss_pred ccccCCCCCCceEEEEEeCCC
Q 002866 362 FYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 362 ~HK~fG~~PtGvG~LyVRk~~ 382 (872)
++|.||.+...+|+++++++.
T Consensus 268 ~SK~~g~~G~r~G~~~~~~~~ 288 (432)
T 3ei9_A 268 FSNYAGFTGVRLGWTVIPKKL 288 (432)
T ss_dssp SHHHHCTTTTCCEEEECCTTC
T ss_pred chhccCCcccceEEEEEChHH
Confidence 999998312238999887765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-12 Score=134.87 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhc------CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC-----eEEEecccCchhHHHHHHHH---HH
Q 002866 199 EHDIKTRIMDHL------NIPENEYGLVFTVSRGSAFKLLAESYPFHTNK-----KLLTMFDYESQSVNWMAQSA---KE 264 (872)
Q Consensus 199 ieeARerIA~lL------gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd-----~ILT~~DhEHnSVl~~~~~A---kr 264 (872)
+.+.|++||+++ +++++ .|+||+|+|+|+++++.++ .++|+ +|++..+-.+.......... ..
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 457899999998 56665 5999999999999999987 35665 77764222222222111111 11
Q ss_pred cCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeecccc
Q 002866 265 KGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 265 kGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~ 340 (872)
.+..+..++.+.....++.++|+ +. +++++|.++..+|.||+++|. + +++.|+++|+++++|.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~--~~--------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~ 223 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH--IG--------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYG 223 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC--CC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred ccCcccccCCcccccccCHHHhc--cc--------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCc
Confidence 24455544433112346777775 32 358999999999999999994 4 3456899999999999986
Q ss_pred CCCCC---ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 341 GPKDM---DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 341 aG~~m---ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+... ..+.....+.++++.|++|+ +.+..++|+++.++++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~ 272 (417)
T 3g7q_A 224 VPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIA 272 (417)
T ss_dssp TTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHH
T ss_pred cccccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHH
Confidence 42200 11112234678999999995 531234888887776665543
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=125.88 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
..+++++.+++++|++. .+++.++|+|+..++.++ .++||.|++. +..|.++.. .++..|+++..++.
T Consensus 105 ~~~~l~~~la~~~g~~~----~i~~~sGt~a~~~~l~~~-~~~gd~Vl~~-~~~~~~~~~---~~~~~g~~~~~~~~--- 172 (409)
T 3kki_A 105 DKPMIEKRLAKFTGFDE----CLLSQSGWNANVGLLQTI-CQPNTNVYID-FFAHMSLWE---GARYANAQAHPFMH--- 172 (409)
T ss_dssp TSCHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-CCTTCEEEEE-TTSCHHHHH---HHHHTTCEEEEECT---
T ss_pred HHHHHHHHHHHHhCCCe----EEEecchHHHHHHHHHHh-cCCCCEEEEC-CCcCHHHHH---HHHHcCCeEEEecC---
Confidence 44678999999999853 344555579988888776 4789998876 345665543 33456888876643
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCc--------cC
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMD--------SL 348 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mi--------pL 348 (872)
.+.++|+++|... ++++|.++..+|.||.+.|++ +++.|+++|+++++|.++..+. .. .+
T Consensus 173 ---~d~~~le~~l~~~-------~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~-~g~~g~~~~~~~ 241 (409)
T 3kki_A 173 ---NNCDHLRMLIQRH-------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT-HGPNGAGLLAEL 241 (409)
T ss_dssp ---TCHHHHHHHHHHH-------CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SSGGGCCHHHHH
T ss_pred ---CCHHHHHHHHHhc-------CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCcchhhc
Confidence 4789999998752 368999999999999999997 5678899999999999997653 00 12
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
++. .++|+++.|++|+||. + .|+++.+++.++.+.
T Consensus 242 ~~~-~~~di~~~s~sK~~~~-~--gg~v~~~~~~~~~~~ 276 (409)
T 3kki_A 242 GLT-REVHFMTASLAKTFAY-R--AGAIWCNNEVNRCVP 276 (409)
T ss_dssp TCG-GGCSEEEEESSSTTCS-S--CEEEEESSSGGGTHH
T ss_pred CCC-CCCCEEEeecchhhCC-C--ceEEEECHHHHHHHH
Confidence 221 2689999999999995 3 488888887765543
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=132.93 Aligned_cols=172 Identities=13% Similarity=0.094 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH--HHHHhhCC--CCCC---------CeEEEecccCchhHHHHHHHHHHc
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSAF--KLLAESYP--FHTN---------KKLLTMFDYESQSVNWMAQSAKEK 265 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeAL--nLVaeslp--f~~G---------d~ILT~~DhEHnSVl~~~~~Akrk 265 (872)
..+.|+.||++++++++ .|+||+|+|+|+ ++++..+. +.+| ++|++.. ++...+...++..
T Consensus 78 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~----p~y~~~~~~~~~~ 151 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD--LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPV----PGYDRHFTITEHF 151 (422)
T ss_dssp CHHHHHHHHHHHTCCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE----SCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCChh--HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeC----CccHHHHHHHHHc
Confidence 35799999999999876 599999999997 77777653 2223 3566542 1222334556667
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE-EeCccCcccchhcHHHH----HHHH-HCCcEEEeeccc
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV-FPVQSRVTGAKYSYQWM----ALAQ-QNHWHVLLDAGS 339 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa-~p~vSNvTG~i~PLe~I----~~Ar-e~G~~VLVDAAQ 339 (872)
|+++..+|++. ++ ++.++|++++.. .++++|. ++..+|.||.++|.+.+ ..|+ ++|+++++|.++
T Consensus 152 g~~~~~v~~~~-~g-~d~~~l~~~l~~-------~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y 222 (422)
T 3d6k_A 152 GFEMINVPMTD-EG-PDMGVVRELVKD-------PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAY 222 (422)
T ss_dssp TCEEEEEEEET-TE-ECHHHHHHHHTS-------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred CCEEEecCCCC-CC-CCHHHHHHHHhc-------CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCc
Confidence 99999999976 34 899999988853 1477777 79999999999999733 3456 899999999998
Q ss_pred cC---CC---CCccC-C----CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 340 LG---PK---DMDSL-G----LSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 340 ~a---G~---~mipL-D----Ls~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
.. .. ...++ + +...+.++++.|++|+ +. | ..+|++++++++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~-~GlriG~~~~~~~l~~~l~ 280 (422)
T 3d6k_A 223 ALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH-AGSGVSFFASSKENIEWYA 280 (422)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SC-TTSSCEEEECCHHHHHHHH
T ss_pred cccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cC-cccceEEEEeCHHHHHHHH
Confidence 52 11 00111 1 1234678999999998 44 4 23899998877665554
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=130.61 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||++++ ++++ .|++|+|+|+|+.+++..+.+.+|+.|++..- .|.. +...++..|++++.++
T Consensus 137 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p-~y~~---~~~~~~~~g~~~~~~~ 210 (500)
T 3tcm_A 137 HGLRDAIASGIASRDGFPANAD--DIFLTDGASPGVHLMMQLLIRNEKDGILVPIP-QYPL---YSASIALHGGALVPYY 210 (500)
T ss_dssp HHHHHHHHHHHHHHHSSCCCGG--GEEEESSSHHHHHHHHHHHCCSTTEEEEEEES-CCTH---HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCcc--cEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCC-CcHh---HHHHHHHcCCEEEEEe
Confidence 467888887764 5555 59999999999999999986578999876532 2333 3344566799999999
Q ss_pred ccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCC---CC
Q 002866 274 FKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPK---DM 345 (872)
Q Consensus 274 vd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~---~m 345 (872)
++.. +..++.++|+++|..... ...++++|++...+|.||.++|.+. ++.|+++|+++++|.+..... ..
T Consensus 211 ~~~~~~~~~d~~~l~~~l~~~~~--~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~ 288 (500)
T 3tcm_A 211 LNESTGWGLETSDVKKQLEDARS--RGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNK 288 (500)
T ss_dssp CBTTTTSBCCHHHHHHHHHHHHH--TTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTC
T ss_pred cccccCCCCCHHHHHHHHHHHHh--cCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCC
Confidence 8764 236899999999975321 2235889999999999999999853 345799999999999964311 00
Q ss_pred ccCCCC---------CCCCc-EEEEcccccC-CCCCCc--eEEEEE---eCCCcccc
Q 002866 346 DSLGLS---------LFRPD-FIITSFYRVF-GFDPTG--FGCLLI---KKSVMGSL 386 (872)
Q Consensus 346 ipLDLs---------~l~~D-Flv~S~HK~f-G~~PtG--vG~LyV---Rk~~i~~L 386 (872)
....+. .-.++ +++.|++|.| | +.| +|++++ .+++++.+
T Consensus 289 ~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~G~R~G~~~~~~~~~~~~~~l 343 (500)
T 3tcm_A 289 KFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG--ECGKRGGYFEITGFSAPVREQI 343 (500)
T ss_dssp CCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC--CGGGCCEEEEEESCCTTHHHHH
T ss_pred CCCcHHHHHHHhccccCCeEEEEEecCCccCCC--CCccceEEEEEeCCCHHHHHHH
Confidence 011111 11222 5567999988 6 345 688887 55555444
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=129.58 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCe-EEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKK-LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~-ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....++|+++++++|++. .+|++|+|+|+.+++..+. .+|++ +++.....|.........+...|+++..++.+
T Consensus 48 ~~~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA 122 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT
T ss_pred HHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc
Confidence 356789999999999853 4677899999998887753 35665 44332323333322112223459999888763
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcHHH----HHHHHHCCcEEEeeccccCCC----CCc
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQW----MALAQQNHWHVLLDAGSLGPK----DMD 346 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe~----I~~Are~G~~VLVDAAQ~aG~----~mi 346 (872)
++.++.++|+++ . +++++|.+...+|.+ |.++|++. ++.|+++|+++++|+++..+. ...
T Consensus 123 --~~~~d~~~l~~~-~--------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~ 191 (359)
T 3pj0_A 123 --NQLLTIDDIKSL-R--------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKS 191 (359)
T ss_dssp --TSCCCHHHHHTC-S--------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC
T ss_pred --CCCcCHHHHHhc-c--------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC
Confidence 567898888765 2 358899998887877 79999864 456799999999999875331 000
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..++. ..+|.+++|+||+|++ |.| |+++.++++++.+.
T Consensus 192 ~~~~~-~~~d~~~~s~sK~~~~-~~g-g~~~~~~~l~~~~~ 229 (359)
T 3pj0_A 192 AEEIC-ALFDSVYVSFYKGIGG-IAG-AILAGNDDFVQEAK 229 (359)
T ss_dssp HHHHH-TTCSEEEEESSSTTCC-SSC-EEEEECHHHHHHHH
T ss_pred HHHhh-ccCCEEEEeccccCCC-cce-EEEECCHHHHHHHH
Confidence 11121 3679999999999887 777 88888877766554
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=134.09 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=119.8
Q ss_pred HHHHHHHHHhc----C--CCCC-CCcEEEeCCHHHHHHHHHhhC----CCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 200 HDIKTRIMDHL----N--IPEN-EYGLVFTVSRGSAFKLLAESY----PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 200 eeARerIA~lL----g--A~~d-EY~VVFTsnATeALnLVaesl----pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.+.|+.|++++ + .... +..|+||+|+|+|+++++.++ -.++||+|++.. ..|.++. ..++..|++
T Consensus 141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~-p~~~~~~---~~~~~~g~~ 216 (533)
T 3f6t_A 141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINE-PIFTPYL---RIPELKDYE 216 (533)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEES-SCCHHHH---TSGGGGGSE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcC-CCcHHHH---HHHHHcCCe
Confidence 45677777776 2 2221 126999999999999999873 367899988763 3444443 334557899
Q ss_pred EEEEeccC---CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHH-HCCcEEEeecccc
Q 002866 269 VYSAWFKW---PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQ-QNHWHVLLDAGSL 340 (872)
Q Consensus 269 V~~Vpvd~---p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Ar-e~G~~VLVDAAQ~ 340 (872)
+..++++. .+..++.++|++++. +++++|.+...+|+||.++|.+. ++.|+ ++|+++++|.++.
T Consensus 217 ~~~v~~~~~~~~~~~~d~~~l~~~l~--------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~ 288 (533)
T 3f6t_A 217 LVEVDLHSYEKNDWEIEPNEIEKLKD--------PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG 288 (533)
T ss_dssp EEEECCCEETTTTSEECHHHHHHHSC--------TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG
T ss_pred EEEEEecCCcccCCCCCHHHHHHHhC--------CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc
Confidence 99998862 346789999988774 25899999999999999999962 34566 5899999999965
Q ss_pred CCCCCccCCCCC--CCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 002866 341 GPKDMDSLGLSL--FRPDFIITSFYRVFGFDPTG--FGCLLIKKS 381 (872)
Q Consensus 341 aG~~mipLDLs~--l~~DFlv~S~HK~fG~~PtG--vG~LyVRk~ 381 (872)
.-.. ....+.. .+.++++.|++|.|| +.| +|+++++++
T Consensus 289 ~~~~-~~~~~~~~~~~~~i~~~S~SK~~g--~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 289 AFVP-NFKSIYSVVPYNTMLVYSYSKLFG--CTGWRLGVIALNEK 330 (533)
T ss_dssp GGST-TCCCHHHHSGGGEEEEEESHHHHT--CGGGCEEEEEEESS
T ss_pred cccc-CccCHhhcCCCCEEEEecCcccCC--CcccceEEEEECcH
Confidence 2110 0111211 134599999999999 568 899999887
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=128.04 Aligned_cols=216 Identities=13% Similarity=0.020 Sum_probs=135.6
Q ss_pred CceecccCC------CCCCcHHHHHHhhhcccccHHHHHHhhccC--cCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 149 PKVCLDYCG------FGLFSYIQTLHYWESSTFSLSEITANLSNH--ALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 149 ~~IYLDyAA------tgp~p~~VieA~~e~~~F~ls~i~~nL~~~--~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~V 219 (872)
+..|+|.++ .++.++.+++++.+ .+... ..+ +.+ .....+++++++++++++++ .|
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~-----------~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~--~v 113 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAK-----------QLSTLDYSPGFQYG--HPLSFQLAEKITDLTPGNLN--HV 113 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHH-----------HTTTCSCCCSSSCC--CHHHHHHHHHHHTTSSTTEE--EE
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHH-----------HHHhCCCccccccC--CHHHHHHHHHHHHhCCCCCC--EE
Confidence 467899852 33447788887533 11111 011 222 24567899999999987765 59
Q ss_pred EEeCCHHHHHHHHHhhCC-CC------CCCeEEEecccCchhHHHHHHHHH----HcC-----cEEEEEeccC--CC--C
Q 002866 220 VFTVSRGSAFKLLAESYP-FH------TNKKLLTMFDYESQSVNWMAQSAK----EKG-----AKVYSAWFKW--PT--L 279 (872)
Q Consensus 220 VFTsnATeALnLVaeslp-f~------~Gd~ILT~~DhEHnSVl~~~~~Ak----rkG-----aeV~~Vpvd~--p~--g 279 (872)
+||+|+|+|+.+++..+. +. ++++||+.....|........... +.+ ..+..+++.. .. .
T Consensus 114 ~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 193 (449)
T 3a8u_X 114 FFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYS 193 (449)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTC
T ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccc
Confidence 999999999998877642 11 467887654434554443222210 111 1245555432 10 0
Q ss_pred ccC--------HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC-
Q 002866 280 KLC--------STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD- 344 (872)
Q Consensus 280 ~Id--------~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~- 344 (872)
.++ .++|+++|.... ..++++|.+..++|.||.+.| ++. .+.|+++|+++++|.+|. .|..
T Consensus 194 ~~d~~~~~~~~~~~le~~l~~~~----~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g 269 (449)
T 3a8u_X 194 RGMPKEGGIALADELLKLIELHD----ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269 (449)
T ss_dssp SSSCSSSHHHHHHHHHHHHHHHC----GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cCChHHHHHHHHHHHHHHHHhcC----CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC
Confidence 134 888888886420 124788888888888999999 874 567899999999999984 5531
Q ss_pred -CccCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCcccccC
Q 002866 345 -MDSLGLSLFRPDFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 345 -mipLDLs~l~~DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~P 388 (872)
+..++.-...+|++++| |.|++ | +|++++++++++.+.+
T Consensus 270 ~~~~~~~~~~~~di~s~s--K~l~~---G~~~~G~~~~~~~~~~~l~~ 312 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIA--KQVTN---GAIPMGAVIASTEIYQTFMN 312 (449)
T ss_dssp SSSHHHHHTCCCSEEEEC--GGGGT---TSSCCEEEEEEHHHHHHHHT
T ss_pred cchhhhhcCCCCCEEEEc--ccccC---CCCceEEEEECHHHHHHhhc
Confidence 01122223458988555 99883 6 9999999887766653
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=123.89 Aligned_cols=207 Identities=11% Similarity=0.066 Sum_probs=133.9
Q ss_pred CceecccCCCC------CCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGFG------LFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg------p~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||+++.. ..++.+++++.+ .+.. ..++ +.......+++++++++++|. + .|+|
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-----------~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~--~v~~ 98 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKA-----------QVDK-LLHTSNLYYNENIAAAAKNLAKASAL--E--RVFF 98 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHH-----------HHTT-CSCCCTTSBCHHHHHHHHHHHHHHTC--S--EEEE
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHH-----------HHHh-ccccccccCCHHHHHHHHHHHHhcCC--C--eEEE
Confidence 46799988762 236778777532 1111 1111 111235677899999999983 3 5999
Q ss_pred eCCHHHHHHHHHhhCC-C-----CCCCeEEEecccCchhHHHHHHH---------HHHcCcEEEEEeccCCCCccCHHHH
Q 002866 222 TVSRGSAFKLLAESYP-F-----HTNKKLLTMFDYESQSVNWMAQS---------AKEKGAKVYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 222 TsnATeALnLVaeslp-f-----~~Gd~ILT~~DhEHnSVl~~~~~---------AkrkGaeV~~Vpvd~p~g~Id~edL 286 (872)
|+|+|+|+.+++..+. . .++++|++.....|......... ....+..+..++.+ +.++|
T Consensus 99 ~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l 172 (395)
T 3nx3_A 99 TNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN------DISSV 172 (395)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT------CHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC------CHHHH
Confidence 9999999998776531 1 24677776543334433221110 01123455555532 56777
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFI 358 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFl 358 (872)
+++|. .++++|.+...+|.+|.+.| ++. .+.|+++|+++++|.+|. .|.. ...++.....+|++
T Consensus 173 ~~~l~--------~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~ 244 (395)
T 3nx3_A 173 EKLVN--------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM 244 (395)
T ss_dssp HTTCC--------TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred HHhcc--------CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE
Confidence 76664 35889999999999999988 764 467899999999999986 3321 11223334568988
Q ss_pred EEcccccCCCCCCceEEEEEeCCC-cccccC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSV-MGSLQN 388 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~-i~~L~P 388 (872)
++| |.||+ +.++|+++++++. ++.+.+
T Consensus 245 t~s--K~~~~-G~~~G~~~~~~~~~~~~~~~ 272 (395)
T 3nx3_A 245 TSA--KALGC-GLSVGAFVINQKVASNSLEA 272 (395)
T ss_dssp EEC--GGGTT-TSCCEEEEECHHHHHHHSCT
T ss_pred Eec--ccccC-CCceEEEEEchhhhhhhcCC
Confidence 877 88876 5679999999988 777765
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-11 Score=128.95 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC--eEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNK--KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd--~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
...+.|++|++++|++. .+|+.|+|+|+.+++..+. .+|+ .|++. ...|.+.......+...|+++..++.
T Consensus 48 ~~~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~-~~~~~~~~~~~~~~~~~g~~~~~v~~- 120 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWS-DETDNRTVAYH-PLCHLEIHEQDGLKELHPIETILVGA- 120 (357)
T ss_dssp THHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEEC-TTCHHHHSSTTHHHHHSSCEEEECSC-
T ss_pred HHHHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHh-hcCCCcEEEec-ccceeeeeccchhhhccCcEEEEecC-
Confidence 35689999999999842 4667888999988877653 4566 45554 32344332211223446888887774
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcH---H-HHHHHHHCCcEEEeecccc------CCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSY---Q-WMALAQQNHWHVLLDAGSL------GPKD 344 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PL---e-~I~~Are~G~~VLVDAAQ~------aG~~ 344 (872)
+++.++.++|+++ .++++|.+...+|.| |.++|. + +++.|+++|+++++|.++. .+..
T Consensus 121 -~~~~~d~~~l~~~----------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 189 (357)
T 3lws_A 121 -ADRLMTLDEIKAL----------PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT 189 (357)
T ss_dssp -TTSCCCHHHHHTC----------CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred -CCCCcCHHHHhcC----------cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC
Confidence 3467888888654 137899999999998 999984 4 3456799999999999865 1221
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
..++. ..+|.+++|+||+|++ |.| |+++.+++.++.+.
T Consensus 190 --~~~~~-~~~d~~~~s~sK~~~~-~~g-g~~~~~~~~~~~~~ 227 (357)
T 3lws_A 190 --AAEIA-GLFDSIYISFYKGLGG-IAG-AILAGPAAFCQTAR 227 (357)
T ss_dssp --HHHHH-TTSSEEEEESSSTTCC-SSC-EEEEECHHHHHHHH
T ss_pred --hHHHH-hcCCEEEEeccccCCC-Cce-EEEEcCHHHHHHHH
Confidence 11121 3579999999999976 888 99888777665543
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=134.96 Aligned_cols=170 Identities=9% Similarity=0.053 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++++.+|+++|++. .+++|+|+|.|+..++.++ .++||.||+. ...|.|+... +...|+++++++.++
T Consensus 195 g~i~eaE~~lA~~fGa~~---a~~v~nGts~An~~ai~al-~~pGD~VLv~-r~~H~S~~~~---l~lsGa~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR---SYMVTNGTSTANKIVGMYS-APAGSTILID-RNCHKSLTHL---MMMSDVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEE-SSCCHHHHHH---HHHSCCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCCC---ceEECcHHHHHHHHHHHHh-CCCCCEEEEC-CCccHHHHHH---HHHcCCEEEEEeccc
Confidence 578899999999999953 4666777788988888877 4789998877 4468888653 455799999998754
Q ss_pred CCC----cc-----CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCc
Q 002866 277 PTL----KL-----CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 277 p~g----~I-----d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
+.. .+ +.++|+++|.+..+ ..+++++++++. |.+|.++|++.| +.|+.+ .+++|.||.++....
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~---~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~ 340 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPN---ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFS 340 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTT---CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGS
T ss_pred cccccccCcccccCCHHHHHHHHhhCcC---ccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccC
Confidence 322 23 79999999975310 111247777777 899999999855 455654 378999987652001
Q ss_pred cC--CCCCC----CCcEE---EEcccccCCCCCCceEEEEEeCC
Q 002866 347 SL--GLSLF----RPDFI---ITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 347 pL--DLs~l----~~DFl---v~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+. +.+.+ .+|++ +.|+||.+++ |++.|+|++++.
T Consensus 341 ~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~ 383 (715)
T 3n75_A 341 PIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGD 383 (715)
T ss_dssp GGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESC
T ss_pred CccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCch
Confidence 11 12222 26876 9999999998 899999999876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=124.14 Aligned_cols=207 Identities=11% Similarity=0.031 Sum_probs=128.4
Q ss_pred CceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|+++..+ .++.+++++.+ .+ ... ..+++........++++++++++|++ .|+||
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~-------~~-~~~---~~~~~~~~~~~~~~l~~~la~~~~~~----~v~~~ 102 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNE-------QA-SKF---WHTGNGYTNEPVLRLAKKLIDATFAD----RVFFC 102 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHH-------HH-TTC---SCCCTTSCCHHHHHHHHHHHHHSSCS----EEEEE
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHH-------HH-Hhc---ccccCCcCCHHHHHHHHHHHhhCCCC----eEEEe
Confidence 467999888732 26777776432 11 111 01111111245788999999999874 49999
Q ss_pred CCHHHHHHHHHhhCCC------CCC-CeEEEecccCchhHHHHHHHHHH---------cCcEEEEEeccCCCCccCHHHH
Q 002866 223 VSRGSAFKLLAESYPF------HTN-KKLLTMFDYESQSVNWMAQSAKE---------KGAKVYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 223 snATeALnLVaeslpf------~~G-d~ILT~~DhEHnSVl~~~~~Akr---------kGaeV~~Vpvd~p~g~Id~edL 286 (872)
+|+|+|+.+++..+.. .+| ++|++.....|............ .+..+..+|. .+.++|
T Consensus 103 ~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l 176 (406)
T 4adb_A 103 NSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------NDINSA 176 (406)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------TCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------CcHHHH
Confidence 9999999998876521 034 77776544445554433322110 0124444443 256777
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchh-----cHH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-----SYQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-----PLe-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
+++|. +++++|.+.. +|.||.++ +++ +++.|+++|+++++|.++. .+.. ...++.....+|+
T Consensus 177 ~~~l~--------~~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 247 (406)
T 4adb_A 177 SALID--------DSTCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247 (406)
T ss_dssp HTTCS--------TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE
T ss_pred HHHhc--------CCeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCE
Confidence 76663 3589999985 56676554 455 4567899999999999985 2210 0122233456888
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++ ++|.||+ ...+|++++++++++.+.+
T Consensus 248 ~t--~sK~~~~-G~r~G~~~~~~~~~~~~~~ 275 (406)
T 4adb_A 248 LT--TAKALGG-GFPVGALLATEECARVMTV 275 (406)
T ss_dssp EE--ECGGGGT-TSCCEEEEECHHHHHTCCT
T ss_pred EE--echhhcC-CCCeEEEEEcHHHHhhhcc
Confidence 85 5999984 3349999999988777764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-10 Score=122.03 Aligned_cols=207 Identities=10% Similarity=0.029 Sum_probs=125.6
Q ss_pred CCceecccCC---CCC---CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCG---FGL---FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAA---tgp---~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|+|.++ ..+ .++.+++++.+ ..... ..+.+.-......+.+++|++++|. + .|+|
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~--------~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~--~--~v~~ 127 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMIN--------QAKNL---TICSRAFFSVPLGICERYLTNLLGY--D--KVLM 127 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHH--------HHTTC---SCCCTTSEEHHHHHHHHHHHHHHTC--S--EEEE
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHH--------HHHhC---CCccCCcCCHHHHHHHHHHHhhcCC--C--eEEE
Confidence 3467999766 222 56777777533 11111 1111111124567888999999984 3 4999
Q ss_pred eCCHHHHHHHHHhhCC--------CCCC-CeEEEecccCchhHHHHHHHHH----HcC-----cEEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAESYP--------FHTN-KKLLTMFDYESQSVNWMAQSAK----EKG-----AKVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaeslp--------f~~G-d~ILT~~DhEHnSVl~~~~~Ak----rkG-----aeV~~Vpvd~p~g~Id~ 283 (872)
|+|+|+|+.+++.... ..+| ++||+.....|........... +.| ..+..+|. .+.
T Consensus 128 ~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~ 201 (433)
T 1z7d_A 128 MNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDL 201 (433)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT------TCH
T ss_pred eCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCH
Confidence 9999999998876531 1356 7777664333554433222211 011 24444443 268
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchh----cHHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY----SYQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~----PLe~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
++|+++|.. +++++|.+..+++.+|.+. +++. .+.|+++|+++++|.+|. .+.. +..++.....+
T Consensus 202 ~~le~~l~~-------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~ 274 (433)
T 1z7d_A 202 EALEEELKD-------PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP 274 (433)
T ss_dssp HHHHHHHTS-------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHhCC-------CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCC
Confidence 889888841 2588999988888899987 6764 567899999999999986 3220 01122223568
Q ss_pred cEEEEcccccCCCCCCc---eEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTG---FGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG---vG~LyVRk~~i~~L~ 387 (872)
|+++ +.|++|+ | +|++++++++++.+.
T Consensus 275 di~t--~sK~l~~---G~~~~G~v~~~~~~~~~l~ 304 (433)
T 1z7d_A 275 DVIL--LGKALSG---GHYPISAVLANDDIMLVIK 304 (433)
T ss_dssp SEEE--ECGGGGT---TSSCCEEEEECHHHHTTCC
T ss_pred CEEE--ECccccC---CCCCeEEEEECHHHHhhhc
Confidence 9885 5599984 6 999999988766554
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=127.20 Aligned_cols=219 Identities=9% Similarity=-0.006 Sum_probs=134.5
Q ss_pred CCceecccCCC------CCCcHHHH-H-HhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC-CCCCCCc
Q 002866 148 SPKVCLDYCGF------GLFSYIQT-L-HYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN-IPENEYG 218 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~Vi-e-A~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg-A~~dEY~ 218 (872)
++..|||+.+. +..++.++ + ++.+ + +. .+.....+++.-......+.+++++++++ .+++ .
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~---~----~~-~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~--~ 121 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHA---E----LM-QAALNKPSNSDVYSVAMARFVETFARVLGDPALP--H 121 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHH---H----HH-HHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCC--E
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHH---H----HH-HHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCC--E
Confidence 35789998432 34578888 7 7543 0 10 11111112211112455678889999997 4444 5
Q ss_pred EEEeCCHHHHHHHHHhhC-CC-----------C-CCCeEEEecccCchhHHHHHHH-----HHHcCc-----EEEEEecc
Q 002866 219 LVFTVSRGSAFKLLAESY-PF-----------H-TNKKLLTMFDYESQSVNWMAQS-----AKEKGA-----KVYSAWFK 275 (872)
Q Consensus 219 VVFTsnATeALnLVaesl-pf-----------~-~Gd~ILT~~DhEHnSVl~~~~~-----AkrkGa-----eV~~Vpvd 275 (872)
|+||+|+|+|+.+++... .+ . +|++||+.....|.....+... ..+.|. .+..+|.+
T Consensus 122 v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (449)
T 2cjg_A 122 LFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYM 201 (449)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCC
T ss_pred EEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCC
Confidence 999999999999877532 11 1 2778887654335433322111 112343 56666654
Q ss_pred C--CCC-------ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-
Q 002866 276 W--PTL-------KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL- 340 (872)
Q Consensus 276 ~--p~g-------~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~- 340 (872)
. ... .++.++|+++|... .+++++|.+..++|.+|.+.| ++. .+.|+++|+++++|.+|.
T Consensus 202 d~~~~~~~~~~~~~~~~~~le~~i~~~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g 276 (449)
T 2cjg_A 202 RPGLDEPAMAALEAEALRQARAAFETR-----PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTG 276 (449)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHS-----TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CchhhccccchhhHHHHHHHHHHHHhc-----CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccC
Confidence 3 110 13455687777531 236899999999999998777 764 467899999999999987
Q ss_pred CCCC--CccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 341 GPKD--MDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 341 aG~~--mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.|.. +..++.....+|++++| |+| | +|++++++++++.|.+
T Consensus 277 ~g~~g~~~~~~~~~~~~di~t~s--K~l---~--iG~~~~~~~~~~~l~~ 319 (449)
T 2cjg_A 277 CGLTGTAWAYQQLDVAPDIVAFG--KKT---Q--VCGVMAGRRVDEVADN 319 (449)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEEC--GGG---S--SEEEEECGGGGGSTTC
T ss_pred CCccCcceeecccCCCceEEEec--Ccc---c--EEEEEECHHHhhhhhh
Confidence 4321 00112223578998877 987 3 7899999988776654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-10 Score=122.25 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=128.7
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|.++. ++.++.+++++.+ ..... ..+.+........+.++++++++|. + .|+||
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~--------~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~--~--~v~~~ 120 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKS--------QGETL---WHTSNVFTNEPALRLGRKLIDATFA--E--RVLFM 120 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHH--------HHTTC---CCCCTTSCCHHHHHHHHHHHHHSSC--S--EEEEE
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHH--------HHHhc---ccccCccCCHHHHHHHHHHHhhCCC--C--eEEEe
Confidence 4679998654 3346778777533 11111 1111111125677899999999984 3 49999
Q ss_pred CCHHHHHHHHHhhCC-C-----CCCC-eEEEecccCchhHHHHHHHH----HHcCc-----EEEEEeccCCCCccCHHHH
Q 002866 223 VSRGSAFKLLAESYP-F-----HTNK-KLLTMFDYESQSVNWMAQSA----KEKGA-----KVYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 223 snATeALnLVaeslp-f-----~~Gd-~ILT~~DhEHnSVl~~~~~A----krkGa-----eV~~Vpvd~p~g~Id~edL 286 (872)
+|+|+|+.+++..+. + ++|+ +||+.....|.....+.... .+.|. .+..+|. .+.++|
T Consensus 121 ~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l 194 (420)
T 2pb2_A 121 NSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAV 194 (420)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHH
Confidence 999999999887652 1 0464 77765433355444332221 01121 2555543 267888
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccc----hhcHHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGA----KYSYQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDFI 358 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~----i~PLe~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DFl 358 (872)
+++|.. ++++|.+...+|.+|. ..+++. .+.|+++|+++++|.+|. .+.. +..++.....+|++
T Consensus 195 e~~i~~--------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 195 KAVMDD--------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp HHHCCT--------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred HHHhcc--------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 877742 5889999999998886 344553 467799999999999985 2210 01112223468988
Q ss_pred EEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+ +.|+||+ ...+|++++++++++.+.
T Consensus 267 t--~sK~l~~-G~~iG~~~~~~~l~~~l~ 292 (420)
T 2pb2_A 267 T--SAKALGG-GFPVSAMLTTQEIASAFH 292 (420)
T ss_dssp E--ECGGGGT-TSCCEEEEECHHHHTTCC
T ss_pred E--ecccccC-CCceEEEEEhHHHHHhhc
Confidence 5 5699985 445999999987665554
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-11 Score=131.93 Aligned_cols=177 Identities=13% Similarity=0.161 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhc----C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 199 EHDIKTRIMDHL----N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 199 ieeARerIA~lL----g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
..+.|++|++++ | ++++ .|+||+|+|+|+.+++..+ .++|++|++..- .|. .+...++..|+++..+
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p-~~~---~~~~~~~~~g~~~~~~ 140 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKE--DIVFVEGVVPAISIAIQAF-TKEGEAVLINSP-VYP---PFARSVRLNNRKLVSN 140 (392)
Confidence 456777777765 4 4444 5999999999999999887 467888776532 222 2233455678888888
Q ss_pred eccCCC--CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH---H-HHHHHHHCCcEEEeeccccCCCC--
Q 002866 273 WFKWPT--LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY---Q-WMALAQQNHWHVLLDAGSLGPKD-- 344 (872)
Q Consensus 273 pvd~p~--g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL---e-~I~~Are~G~~VLVDAAQ~aG~~-- 344 (872)
|.+..+ ..++.++|++++.. .++++|.++..+|.||.++|. + +++.|+++|+++++|.++.....
T Consensus 141 ~~~~~~g~~~~d~~~l~~~l~~-------~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g 213 (392)
T 3b1d_A 141 SLKEENGLFQIDFEQLENDIVE-------NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG 213 (392)
Confidence 875322 23678888887752 247788899999999999984 4 34667899999999999764210
Q ss_pred CccCCCC---C--CCCcEEEEcccccCCCCCCceEEEEEeCC-CcccccCC
Q 002866 345 MDSLGLS---L--FRPDFIITSFYRVFGFDPTGFGCLLIKKS-VMGSLQNQ 389 (872)
Q Consensus 345 mipLDLs---~--l~~DFlv~S~HK~fG~~PtGvG~LyVRk~-~i~~L~P~ 389 (872)
.....+. . .+.++++.|++|+||.+...+|++++++. +++.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 264 (392)
T 3b1d_A 214 HEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQ 264 (392)
Confidence 0011221 1 34568999999999831224799998654 77666543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=126.93 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=112.8
Q ss_pred HHHHHHHHHhcCC-----CCCCCcEEEeCCHHHHHHHHHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 200 HDIKTRIMDHLNI-----PENEYGLVFTVSRGSAFKLLAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 200 eeARerIA~lLgA-----~~dEY~VVFTsnATeALnLVaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
.+.|+.||++++. +++ ..|++|+|+|+|+++++.++ ..+|| +|++.. -.|.. +...++..|+++.
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~-P~y~~---~~~~~~~~g~~~~ 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATED-RYIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAA-PFYST---YVEETTYVRSGMY 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSS-SEEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECS-SCCTH---HHHHHHTTCBTTE
T ss_pred HHHHHHHHHHHHhcCCCCCCC-CeEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcC-CCchh---HHHHHHHcCCeEE
Confidence 5799999999983 332 25999999999999999987 36788 887653 23343 3445666799988
Q ss_pred EEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCC
Q 002866 271 SAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGL 350 (872)
Q Consensus 271 ~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDL 350 (872)
.++++.... . .+++++|.++..+|.||.+++ +++..++.+++++++|.+++.++ ..++..
T Consensus 145 ~~~~d~~~l--~----------------~~~~k~v~l~~p~NPtG~~~~-~l~~~~~~~~~~ii~De~y~~~~-~~~l~~ 204 (391)
T 3bwn_A 145 KWEGDAWGF--D----------------KKGPYIELVTSPNNPDGTIRE-TVVNRPDDDEAKVIHDFAYYWPH-YTPITR 204 (391)
T ss_dssp EEEEESTTC--C----------------CCSCEEEEEESSCTTTCCCCC-CCC-----CCCEEEEECTTCSTT-TSCCCC
T ss_pred EecCCHHHc--C----------------CCCCEEEEECCCCCCCchhHH-HHHHHhhcCCCEEEEeCCCCCCC-CCcccc
Confidence 888764321 1 125889999999999999997 43342234459999999987543 124443
Q ss_pred CCCCCcEEEEcccccCCCCCCce--EEEEE-eCCCccccc
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGF--GCLLI-KKSVMGSLQ 387 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGv--G~LyV-Rk~~i~~L~ 387 (872)
..+.++++.|++|.|| +.|+ |++++ .+++++.|.
T Consensus 205 -~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~l~~~l~ 241 (391)
T 3bwn_A 205 -RQDHDIMLFTFSKITG--HAGSRIGWALVKDKEVAKKMV 241 (391)
T ss_dssp -CBCCSEEEEEHHHHHS--CGGGCEEEEEECCHHHHHHHH
T ss_pred -CCCCeEEEEechhhcC--CCccceEEEEecCHHHHHHHH
Confidence 4567899999999998 5585 99998 556555443
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=119.79 Aligned_cols=209 Identities=13% Similarity=0.076 Sum_probs=132.8
Q ss_pred CCceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||+.+... .++.+++++.+ .+.. ...++.|+ ....+.+++++++++ +++ .|+|
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~-------~~~~----~~~~~~~~--~~~~~l~~~la~~~~-~~~--~v~~ 116 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITT-------AAEN----GVLYGTPT--ALEVKFAKMLKEAMP-ALD--KVRF 116 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHH-------HHHH----CSCCSSCC--HHHHHHHHHHHHHCT-TCS--EEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHH-------HHHh----CcCCCCCC--HHHHHHHHHHHHhCC-CCC--EEEE
Confidence 3567999887642 47788887543 1211 12234443 345678889999997 444 5999
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcC-----------------cEEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKG-----------------AKVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkG-----------------aeV~~Vpvd~p~g~Id~ 283 (872)
|+|+|+|+.+++.... +..+++||+....-|......... ...+ ..+..+|.+ +.
T Consensus 117 ~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~ 189 (434)
T 3l44_A 117 VNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVA-AGSGPSTLGTPDSAGVPQSIAQEVITVPFN------NV 189 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC--------CCCBSSTTCCHHHHTTEEEECTT------CH
T ss_pred eCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhh-cCCcccccCCCCcCCCCCcCCCceEecCcc------cH
Confidence 9999999998776532 124567776433223322111100 0000 123333321 67
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccC---CCCCccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLG---PKDMDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~a---G~~mipLDLs~l~~ 355 (872)
++|+++|.... +++.+|.+...++.+|.+.| ++. .+.|+++|+++++|.++.. |. +..++.-...+
T Consensus 190 ~~le~~l~~~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~-~~~~~~~~~~~ 263 (434)
T 3l44_A 190 ETLKEALDKWG-----HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMY-GGAQDLLGVTP 263 (434)
T ss_dssp HHHHHHHHHHG-----GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSS-SCHHHHHTCCC
T ss_pred HHHHHHHHhCC-----CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccc-cHHHHHcCCCC
Confidence 88988886421 24789999999999999998 874 4678999999999999862 22 01122233568
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|++++| |.||+ +..+|+++.++++++.+.+
T Consensus 264 di~t~s--K~~~~-G~~iG~~~~~~~i~~~~~~ 293 (434)
T 3l44_A 264 DLTALG--KVIGG-GLPIGAYGGKKEIMEQVAP 293 (434)
T ss_dssp SEEEEE--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred Ceeehh--hhhcC-CcCeeeEEEcHHHHHhhcc
Confidence 887766 98886 6779999999988877764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-09 Score=114.81 Aligned_cols=209 Identities=11% Similarity=0.068 Sum_probs=131.0
Q ss_pred CCceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||+.+... .++.+++++.+ .+.....++.|+ ....+.+++++++++ .++ .|+|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~-----------~~~~~~~~~~~~--~~~~~la~~l~~~~~-~~~--~v~~ 114 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIE-----------AVERGLSFGAPT--EMEVKMAQLVTDLVP-TMD--MVRM 114 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHH-----------HHTTCSCCSSCC--HHHHHHHHHHHHHST-TCS--EEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHH-----------HHHhCcccCCCC--HHHHHHHHHHHhhCC-CCC--EEEE
Confidence 3578999987643 36778877532 121111234444 455678889999997 444 5999
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCc-----------------EEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGA-----------------KVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa-----------------eV~~Vpvd~p~g~Id~ 283 (872)
|+|+|+|+.+++.... +..++.|++.....|......... ...|. .+..++. .+.
T Consensus 115 ~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~ 187 (429)
T 4e77_A 115 VNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVK-AGSGALTLGQPNSPGVPTDFAKHTLTCTY------NDL 187 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECT------TCH
T ss_pred eCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhh-cCCcccccCCCCcCCCCCccCCceeecCC------CCH
Confidence 9999999998776321 123456666543334444322110 00111 1122221 167
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc---CCCCCccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL---GPKDMDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~---aG~~mipLDLs~l~~ 355 (872)
++|+++|... .+++.+|.+..+++.+|.+.| ++. .+.|+++|+++++|.+|. .|. +..++.-...+
T Consensus 188 ~~le~~l~~~-----~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~~~p 261 (429)
T 4e77_A 188 ASVRQAFEQY-----PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYHVIP 261 (429)
T ss_dssp HHHHHHHHHS-----TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTTCCC
T ss_pred HHHHHHHHhc-----CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcCCCC
Confidence 8999888642 235889999999999999999 874 567899999999999987 332 11222233467
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|++++| |.||+ ...+|+++.++++++.+.+
T Consensus 262 di~t~s--K~~~~-G~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 262 DLTCLG--KIIGG-GMPVGAFGGRREVMNALAP 291 (429)
T ss_dssp SEEEEE--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred Ceeeec--ccccC-CCCeEEEEECHHHHHHhcc
Confidence 987665 98885 4568999999888877764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=118.82 Aligned_cols=208 Identities=10% Similarity=0.006 Sum_probs=130.2
Q ss_pred CceecccCC---CCC---CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCG---FGL---FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAA---tgp---~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|+++ ..+ .++.+++++.+ ..... ..+.+.-......+.++++++++|. + .|+||
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~--------~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~--~--~v~~~ 139 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKS--------QVDKL---TLTSRAFYNNVLGEYEEYITKLFNY--H--KVLPM 139 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHH--------HHTTC---SCCCTTSEESSHHHHHHHHHHHHTC--S--EEEEE
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHH--------HHHhc---CcccCccCCHHHHHHHHHHHHhcCC--C--EEEEe
Confidence 467999876 222 56778777533 11111 1111100123456788899999974 3 49999
Q ss_pred CCHHHHHHHHHhhCC-C-------CCC-CeEEEecccCchhHHHHHHHHH----HcC-----cEEEEEeccCCCCccCHH
Q 002866 223 VSRGSAFKLLAESYP-F-------HTN-KKLLTMFDYESQSVNWMAQSAK----EKG-----AKVYSAWFKWPTLKLCST 284 (872)
Q Consensus 223 snATeALnLVaeslp-f-------~~G-d~ILT~~DhEHnSVl~~~~~Ak----rkG-----aeV~~Vpvd~p~g~Id~e 284 (872)
+|+|+|+.+++..+. | .+| ++||+.....|........... +.| ..+..+|.+ +.+
T Consensus 140 ~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------d~~ 213 (439)
T 2oat_A 140 NTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLP 213 (439)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------CHH
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------CHH
Confidence 999999998877632 1 246 6777654333554443322110 111 456655542 678
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchh----cHHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY----SYQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~----PLe~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~D 356 (872)
+|+++|.. +++++|.+..+++.+|.+. +++. .+.|+++|+++++|.+|. .+.. +..++.....+|
T Consensus 214 ~le~~l~~-------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D 286 (439)
T 2oat_A 214 ALERALQD-------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD 286 (439)
T ss_dssp HHHHHTTS-------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHhCC-------CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc
Confidence 88888741 2578898888888899887 6764 567899999999999985 2210 011233345689
Q ss_pred EEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 357 FIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 357 Flv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
++ ++.|.+|+ . ..+|++++++++++.+.
T Consensus 287 i~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~ 315 (439)
T 2oat_A 287 IV--LLGKALSG-GLYPVSAVLCDDDIMLTIK 315 (439)
T ss_dssp EE--EECGGGGT-TSSCCEEEEECHHHHTTSC
T ss_pred EE--EecccccC-CCCCeEEEEECHHHHhccC
Confidence 87 55699884 1 12999999988766554
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=121.99 Aligned_cols=219 Identities=9% Similarity=-0.015 Sum_probs=134.6
Q ss_pred CceecccCCCC------CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGFG------LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAtg------p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|||+++.. ..++.+++++.+ .+ .... +...+.++ ....+.+++++++++++++ .|+||
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-------~~-~~~~-~~~~~~~~--~~~~~l~~~la~~~~~~~~--~v~~~ 108 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGE-------YA-GKLD-HLFSEMLS--RPVVDLATRLANITPPGLD--RALLL 108 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHH-------HH-HHCC-CCCTTCCC--HHHHHHHHHHHHHSCTTCC--EEEEE
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHH-------HH-HhCc-ccccccCC--HHHHHHHHHHHHhCCCCcC--EEEEe
Confidence 46789985432 236788887543 12 1111 11112222 4456788899999998765 59999
Q ss_pred CCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHH---Hc-----CcEEEEEeccCC----C-------CccC
Q 002866 223 VSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAK---EK-----GAKVYSAWFKWP----T-------LKLC 282 (872)
Q Consensus 223 snATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~Ak---rk-----GaeV~~Vpvd~p----~-------g~Id 282 (872)
+|+|+|+.+++... .+..+++||+.....|........... .. ...+..+++... . +.++
T Consensus 109 ~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 188 (433)
T 1zod_A 109 STGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAE 188 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHH
Confidence 99999999987643 122346777654333544433221100 00 013444544210 0 1235
Q ss_pred HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCCCC
Q 002866 283 STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFR 354 (872)
Q Consensus 283 ~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~ 354 (872)
.++|+++|... ...++++|.+..++|.||.+.| ++. .+.|+++|+++++|.++. .+.. +..++.....
T Consensus 189 ~~~le~~l~~~----~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~ 264 (433)
T 1zod_A 189 LDYAFDLIDRQ----SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 264 (433)
T ss_dssp HHHHHHHHHHH----CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHhc----CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCC
Confidence 78888888642 1125788888888888998887 764 567899999999999987 4421 0112222456
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+|++++| |.||. ..++|++++++++++.+.
T Consensus 265 ~di~s~s--K~~~~-G~~ig~~~~~~~~~~~~~ 294 (433)
T 1zod_A 265 PDILTLS--KTLGA-GLPLAAIVTSAAIEERAH 294 (433)
T ss_dssp CSEEEEC--HHHHT-TSSCEEEEECHHHHHHHH
T ss_pred CCEEEec--ccccC-CCCeeEEEEhHHHHHhhc
Confidence 8988766 98885 456899999988766554
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-09 Score=114.42 Aligned_cols=221 Identities=9% Similarity=-0.001 Sum_probs=134.8
Q ss_pred CceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|+|+++..+ .++.+++++.+ .+ ... ..|. +........+++++++++++...++ .|+|
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-------~~-~~~---~~~~~~~~~~~~~~~l~~~la~~~~~~~~~-~v~~ 109 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSA-------AA-ANP---AGATILSASNAPAVTLAERLLASFPGEGTH-KIWF 109 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHH-------HH-HSC---SCSCSSSSEEHHHHHHHHHHHHTTTCTTTE-EEEE
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHH-------HH-Hhc---cCccccccCCHHHHHHHHHHHHhCCCCCCC-EEEE
Confidence 467899887766 56777776532 11 111 1121 1112356788999999999765422 5999
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcC--c---------EEEEEeccCCCCcc----CHHH
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKG--A---------KVYSAWFKWPTLKL----CSTD 285 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkG--a---------eV~~Vpvd~p~g~I----d~ed 285 (872)
|+|+|+|+.+++.... +.++++||+.....|.............. . .+..+|.+...... +.++
T Consensus 110 ~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (439)
T 3dxv_A 110 GHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTL 189 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHH
Confidence 9999999998877621 12456676654433454433221111000 0 12233332110001 4788
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~DF 357 (872)
|+++|.. ....++++|.+...+|.+|.+.| ++ +.+.|+++|+++++|.++. .+.. ...++.....+|+
T Consensus 190 le~~l~~----~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di 265 (439)
T 3dxv_A 190 LTEKLAA----VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDI 265 (439)
T ss_dssp HHHHHHT----SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSE
T ss_pred HHHHHHh----cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCE
Confidence 8888842 12246889999999999999999 87 4567899999999999985 2110 1233444456898
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++ -|.||+ -..+|+++.++++++.+.+
T Consensus 266 ~s~--sK~~~~-G~riG~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 266 LVL--GKGLGG-GLPLSAVIAPAEILDCASA 293 (439)
T ss_dssp EEE--CGGGGT-TSCCEEEEEEHHHHTSCSS
T ss_pred EEE--cchhcC-CcceEEEEECHHHHhhhcC
Confidence 855 598884 2347999999887766653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.2e-10 Score=119.85 Aligned_cols=209 Identities=10% Similarity=0.040 Sum_probs=131.5
Q ss_pred CceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+.-|||..+... .++.+++++.+ .+.....|+.++ ....+.+++++++++ +++ .|+||
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-----------~~~~~~~~~~~~--~~~~~la~~l~~~~~-~~~--~v~~~ 114 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKV-----------AMEKGTSFGAPC--ALENVLAEMVNDAVP-SIE--MVRFV 114 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHH-----------HHTTCSCCSSCC--HHHHHHHHHHHHHST-TCS--EEEEE
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHH-----------HHHhCCCcCCCC--HHHHHHHHHHHHhCC-CCC--EEEEe
Confidence 467999876642 37778777532 111111233343 456678889999997 444 59999
Q ss_pred CCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHH----HH------HcC------cEEEEEeccCCCCccCHHH
Q 002866 223 VSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQS----AK------EKG------AKVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 223 snATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~----Ak------rkG------aeV~~Vpvd~p~g~Id~ed 285 (872)
+|+|+|+.+++... .+..+++||+.....|......... .. ..| ..+..+|.+ +.++
T Consensus 115 ~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~ 188 (427)
T 3fq8_A 115 NSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------DLEA 188 (427)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT------CHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC------CHHH
Confidence 99999999877321 1123456665432223211110000 00 001 123444432 6889
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc---CCCCCccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL---GPKDMDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~---aG~~mipLDLs~l~~DF 357 (872)
|+++|... ..++++|.+...++.+|.+.| ++. .+.|+++|+++++|.++. .|. +..++.....+|+
T Consensus 189 le~~l~~~-----~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~~~~di 262 (427)
T 3fq8_A 189 VKALFAEN-----PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY-GGVQEKFGVTPDL 262 (427)
T ss_dssp HHHHHHHS-----TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT-THHHHHTTCCCSE
T ss_pred HHHHHHhC-----CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chhhHhcCCCCCh
Confidence 99988752 235889999999999999999 874 567899999999999986 221 1122233456898
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++| |.||+ -..+|+++.++++++.+.+
T Consensus 263 ~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 263 TTLG--KIIGG-GLPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp EEEC--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred hhhh--hhhhC-CcceEEEEEcHHHHHhhcc
Confidence 8887 99884 2239999999988877764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=116.70 Aligned_cols=207 Identities=18% Similarity=0.085 Sum_probs=122.5
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|+++. ++.++.+++++.+ .+.....++.+. +..+++.+.++++++ .++ .|+||
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~-----------~~~~~~~~~~~~--~~~~~la~~l~~~~~-~~~--~v~~~ 119 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAE-----------ALSHGVQYAASH--PLEVRWAERIVAAFP-SIR--KLRFT 119 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHH-----------HHTTTCSSCSSC--HHHHHHHHHHHHHCT-TCS--EEEEE
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHH-----------HHHhCCCCCCCC--HHHHHHHHHHHhhCC-CCC--EEEEe
Confidence 3578998554 2356777777533 111111233333 455667777777776 444 59999
Q ss_pred CCHHHHHHHHHhh---CCCCCCCeEEEecccCchhHHHHHHHH-------HHcCcE------EEEEeccCCCCccCHHHH
Q 002866 223 VSRGSAFKLLAES---YPFHTNKKLLTMFDYESQSVNWMAQSA-------KEKGAK------VYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 223 snATeALnLVaes---lpf~~Gd~ILT~~DhEHnSVl~~~~~A-------krkGae------V~~Vpvd~p~g~Id~edL 286 (872)
+|+|+|+.+++.. +. .+++||+.....|.......... ...|+. +..++ + .+.++|
T Consensus 120 ~gg~eA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~----~d~~~l 191 (453)
T 2cy8_A 120 GSGTETTLLALRVARAFT--GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR--P----DDIEGM 191 (453)
T ss_dssp SCHHHHHHHHHHHHHHHH--CCCEEEEECC----------------------------CGGGEEEEC--T----TCHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC--C----CCHHHH
Confidence 9999999988776 43 34566654322233222111101 012432 33333 2 268899
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccCCCC---CccCCCCCCCCcEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLGPKD---MDSLGLSLFRPDFI 358 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~aG~~---mipLDLs~l~~DFl 358 (872)
+++|.... +++++|.+..+.|.||.+.| ++. .+.|+++|+++++|.++. |.. +..++.-...+|++
T Consensus 192 e~~l~~~~-----~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~ 265 (453)
T 2cy8_A 192 REVFANHG-----SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT 265 (453)
T ss_dssp HHHHHHHG-----GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE
T ss_pred HHHHHhcC-----CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE
Confidence 98886421 24788888888778999988 764 567899999999999986 211 00111122458977
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+ +.|+||+ ...+|++++++++++.+.+
T Consensus 266 s--~sK~l~~-G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 266 C--LAKASAG-GLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp E--EEGGGGT-TSSCEEEEECHHHHTTSSS
T ss_pred E--EChhhhC-CcceEEEechHHHHHHhcc
Confidence 5 4599885 4569999999887766643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=116.17 Aligned_cols=210 Identities=11% Similarity=0.044 Sum_probs=131.6
Q ss_pred CCceecccCCCCC------CcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGFGL------FSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAtgp------~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||+.+... .++.+++++.+ .+. .. ..++.|+ ....+.+++++++++ .++ .|+|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~-------~~~-~~---~~~~~~~--~~~~~l~~~la~~~~-~~~--~v~~ 114 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKA-------VAE-RG---TSFGAPT--EIENKLAKLVIERVP-SIE--IVRM 114 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHH-------HHH-HC---SCCSSCC--HHHHHHHHHHHHHST-TCS--EEEE
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHH-------HHh-hC---cCcCCCC--HHHHHHHHHHHHhCC-CCC--EEEE
Confidence 4578999987642 47788887543 121 11 1233343 345678889999987 344 5999
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHH----------HcC------cEEEEEeccCCCCccCHH
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAK----------EKG------AKVYSAWFKWPTLKLCST 284 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~Ak----------rkG------aeV~~Vpvd~p~g~Id~e 284 (872)
|+|+|+|+.+++.... +..+++|++.....|........... ..| ..+..+|.+ +.+
T Consensus 115 ~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~ 188 (429)
T 3k28_A 115 VNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN------DLE 188 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT------CHH
T ss_pred eCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC------CHH
Confidence 9999999998776532 12345666543222322211100000 000 123333321 678
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccC---CCCCccCCCCCCCCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLG---PKDMDSLGLSLFRPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~a---G~~mipLDLs~l~~D 356 (872)
+|+++|.... .++.+|.+...++.+|.+.| ++. .+.|+++|+++++|-++.. |. +..++.....+|
T Consensus 189 ~le~~l~~~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~~~~d 262 (429)
T 3k28_A 189 SVKYAFEQFG-----DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAY-NCGQGYYGVTPD 262 (429)
T ss_dssp HHHHHHHHHG-----GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSST-THHHHHHTCCCS
T ss_pred HHHHHHHhCC-----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chHHHHhCCCCc
Confidence 8988886421 24788888889999999999 874 5678999999999999852 11 011222234688
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.+++| |.||+ ...+|++++++++++.+.+
T Consensus 263 i~t~s--K~~~~-G~~iG~~~~~~~~~~~~~~ 291 (429)
T 3k28_A 263 LTCLG--KVIGG-GLPVGAYGGKAEIMRQVAP 291 (429)
T ss_dssp EEEEC--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred eehhh--hhhcC-CCCeEEEEEcHHHHhhhcc
Confidence 88776 98876 5679999999988777754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=116.65 Aligned_cols=210 Identities=14% Similarity=0.040 Sum_probs=128.7
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|+|.++. +..++.+++++.+ .+ ... ..++.+. ....+.+++++++++ .++ .|+|
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~-------~~-~~~---~~~~~~~--~~~~~l~~~la~~~~-~~~--~v~~ 117 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEE-------AL-ARG---WLYGAPG--EAEVLLAEKILGYVK-RGG--MIRF 117 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHH-------HH-HTC---SCCSSCC--HHHHHHHHHHHHHHC-TTC--EEEE
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHH-------HH-HhC---CCCCCCC--HHHHHHHHHHHHhCC-CCC--EEEE
Confidence 34678898654 2356778777533 11 111 1233332 456778999999995 334 5999
Q ss_pred eCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHH----------HHcCc------EEEEEeccCCCCccCHH
Q 002866 222 TVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSA----------KEKGA------KVYSAWFKWPTLKLCST 284 (872)
Q Consensus 222 TsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~A----------krkGa------eV~~Vpvd~p~g~Id~e 284 (872)
|+|+|+|+.+++... .+..+++||+.....|.........+ ...|+ .+..+|. .+.+
T Consensus 118 ~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~ 191 (434)
T 2epj_A 118 VNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVE 191 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHH
T ss_pred eCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHH
Confidence 999999999887751 12345676654322233211110000 01233 2444443 2688
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccCCCC---CccCCCCCCCCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLGPKD---MDSLGLSLFRPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~aG~~---mipLDLs~l~~D 356 (872)
+|+++|.... .++++|.+..+++.||.+.| ++. .+.|+++|+++++|.+|. |.. +..++.-...+|
T Consensus 192 ~le~~l~~~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~d 265 (434)
T 2epj_A 192 ALERVFAEYG-----DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGD 265 (434)
T ss_dssp HHHHHHHHHG-----GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCS
T ss_pred HHHHHHHhCC-----CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCC
Confidence 9998886421 24788888888888999998 874 567899999999999987 221 011111234689
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++ +.|.+|. ...+|++++++++++.+.+
T Consensus 266 i~s--~sK~l~~-G~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 266 IIV--LGKIIGG-GFPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp EEE--EEGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred eee--ecchhcC-CcceeeeeecHHHHHhhcc
Confidence 864 5598874 2348999999887766653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5e-10 Score=123.85 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCC-------CCCCCeEEEecccCchhHHHHHHHHHHc
Q 002866 199 EHDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYP-------FHTNKKLLTMFDYESQSVNWMAQSAKEK 265 (872)
Q Consensus 199 ieeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslp-------f~~Gd~ILT~~DhEHnSVl~~~~~Akrk 265 (872)
..+.|+.||++++ ++++ .|++|+|+|+|+++++.++. +++|+.|++..- .+. .+...++..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P-~y~---~~~~~~~~~ 175 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAP-FYP---VFREQTKYF 175 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSS-CCH---HHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCC-Ccc---cHHHHHHHc
Confidence 4578999999987 5555 59999999999999999983 688999887632 233 334445667
Q ss_pred CcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCC
Q 002866 266 GAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDM 345 (872)
Q Consensus 266 GaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~m 345 (872)
|+++.... ++.++|++++. +++++|.++..+|.||.++| +++ + ++..+.|.+.+-+..
T Consensus 176 g~~~~~~~-------~d~~~l~~~~~--------~~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~~~~- 233 (427)
T 2hox_A 176 DKKGYVWA-------GNAANYVNVSN--------PEQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYWPHY- 233 (427)
T ss_dssp CBTTEEEE-------EEGGGGTTCSC--------GGGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCSTTT-
T ss_pred CCeeeeec-------CCHHHHHHhhc--------CCceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccCCCC-
Confidence 87765332 45566655443 24889999999999999999 643 2 567788877654321
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe-CCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTG--FGCLLIK-KSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVR-k~~i~~L~ 387 (872)
-.+.+. .+.|+++.|++|.|| +.| +|+++++ +++++.|.
T Consensus 234 s~~~~~-~~~~i~~~S~SK~~g--~~G~RiG~~~~~~~~l~~~l~ 275 (427)
T 2hox_A 234 TPIKYK-ADEDILLFTMSKFTG--HSGSRFGWALIKDESVYNNLL 275 (427)
T ss_dssp SCCCSC-BCCSEEEEEHHHHTS--CGGGCCEEEEECCHHHHHHHH
T ss_pred CccccC-CCceEEEEeChhcCC--CCCceEEEEEECCHHHHHHHH
Confidence 123333 578999999999998 458 8999995 66665554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-09 Score=119.46 Aligned_cols=173 Identities=8% Similarity=-0.079 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC--C-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY--P-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl--p-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
...+.+-..+++++|.+.. ...+|++++|.+.++.+-+. + ..+++.||+... .|-|+..-. .-.|++.++++
T Consensus 98 ~~e~~~~~~~~~~lGlp~~-~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl---~l~Gl~p~~v~ 172 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSM---VTAGFEPVVIE 172 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHH---HHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCC-ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHH---HHcCCeeEEEE
Confidence 4556777788889998754 47799999996655543322 1 112567776644 677776433 33688888876
Q ss_pred cc--CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCC
Q 002866 274 FK--WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGL 350 (872)
Q Consensus 274 vd--~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDL 350 (872)
.. ...+.++.++|+++|..+.. ..+.+|+.+.-.+-+|..-||+ +++.||++|+++|||+|+.+... ..-++
T Consensus 173 ~~~~~~~~~id~~~le~aI~~~~~----~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~-~~~~l 247 (450)
T 3bc8_A 173 NVLEGDELRTDLKAVEAKIQELGP----EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS-KCMHL 247 (450)
T ss_dssp CEEETTEEECCHHHHHHHHHHHCG----GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH-HHHHH
T ss_pred eeecCccCCcCHHHHHHHHHhcCC----CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhh-hhHhH
Confidence 52 23578999999999976420 1244455544444467999998 55788999999999999765321 11111
Q ss_pred --CCC---CCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 351 --SLF---RPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 351 --s~l---~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+.+ ++|+++.|.|||++. |+|.++|++|.
T Consensus 248 ~~~a~~~~~AD~~v~S~HK~l~a-~~~~~~l~~rd 281 (450)
T 3bc8_A 248 IQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN 281 (450)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESC
T ss_pred HHHHhcccCCCEEEECCccCCCc-hhccEEEEecC
Confidence 122 799999999999988 99999999973
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=110.59 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=128.4
Q ss_pred CceecccCCC---CC---CcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF---GL---FSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt---gp---~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||+.+. .+ .++.+++++.+ .+ ..+ ..+.. ........+.+++++++++++++ .|+|
T Consensus 28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-------~~-~~~---~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~ 94 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHGRAEVGERMAA-------QA-ARL---PFVHGSQFSSDVLEEYAGRLARFVGLPTF--RFWA 94 (430)
T ss_dssp SCEEEETTHHHHTCTTCBCCHHHHHHHHH-------HH-HHC---CCCCTTTCEEHHHHHHHHHHHHHTTCTTC--EEEE
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHH-------HH-Hhc---ccccccccCCHHHHHHHHHHHHhCCCCCC--EEEE
Confidence 4668998874 22 27788877533 12 111 11111 11124567888899999998766 5999
Q ss_pred eCCHHHHHHHHHhhCC-C------CCCCeEEEecccCchhHHHHHHHHHHcC---------c--EEEEEeccCC--CCcc
Q 002866 222 TVSRGSAFKLLAESYP-F------HTNKKLLTMFDYESQSVNWMAQSAKEKG---------A--KVYSAWFKWP--TLKL 281 (872)
Q Consensus 222 TsnATeALnLVaeslp-f------~~Gd~ILT~~DhEHnSVl~~~~~AkrkG---------a--eV~~Vpvd~p--~g~I 281 (872)
|+|+|+|+.+++..+. . ..++.||+....-|.............. . .+..+|.+.. .+..
T Consensus 95 ~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
T 3i4j_A 95 VSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAE 174 (430)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHH
T ss_pred eCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhH
Confidence 9999999998776542 1 2356777653322332221111110000 0 2333343221 0123
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccC-cccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCC-
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSR-VTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLS- 351 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSN-vTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs- 351 (872)
+.++|+++|.... ..++.+|.+...+| .+|.+.| ++. .+.|+++|+++++|-++. .+.. +..++.-
T Consensus 175 ~~~~le~~l~~~~----~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~ 250 (430)
T 3i4j_A 175 DAEGLRALLEREG----PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250 (430)
T ss_dssp HHTHHHHHHHHHC----GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred HHHHHHHHHHhcC----CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhc
Confidence 5578888886420 12478888888889 9999888 764 567899999999999976 3221 1112222
Q ss_pred CCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
...+|.+++| |.||+ - -.+|++++++++++.+.
T Consensus 251 ~~~~di~t~s--K~l~~-G~~r~G~~~~~~~i~~~~~ 284 (430)
T 3i4j_A 251 GVTPDIAVLG--KGLAA-GYAPLAGLLAAPQVYETVM 284 (430)
T ss_dssp TCCCSEEEEC--GGGTT-TSSCCEEEEECHHHHHHHH
T ss_pred CCCCcEEEEc--ccccC-CccccEEEEECHHHHHHHh
Confidence 4468988877 98884 1 22799999888777665
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-08 Score=104.57 Aligned_cols=164 Identities=10% Similarity=0.059 Sum_probs=111.6
Q ss_pred HHHHHHHHHhc-CCC-----CCCCcEE--EeCCHHHHHHHHHhhC--CCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 200 HDIKTRIMDHL-NIP-----ENEYGLV--FTVSRGSAFKLLAESY--PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 200 eeARerIA~lL-gA~-----~dEY~VV--FTsnATeALnLVaesl--pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
.+.|+.|++++ |.. ++ .|. .|.++|+|+.++...+ -.++||.|++..- .|... ...++..|+++
T Consensus 82 ~~lr~~ia~~~~~~~~~~~~~~--~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p-~y~~~---~~~~~~~g~~~ 155 (409)
T 4eu1_A 82 ASFVEEAQKLCFGPTCAALRDG--RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDV-GYPNH---ESIFAKAGMEL 155 (409)
T ss_dssp HHHHHHHHHHHHCSSCHHHHTT--CEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESS-CCTHH---HHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCCchhhccC--ceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCC-CcHhH---HHHHHHcCCeE
Confidence 47899999976 665 44 474 4999999998764322 1367899887632 23333 44556689999
Q ss_pred EEEecc-CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCC
Q 002866 270 YSAWFK-WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPK 343 (872)
Q Consensus 270 ~~Vpvd-~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~ 343 (872)
..+|++ ..+..++.++|++.+... ..+++++.++..+|.||.++|.+. ++.|+++|+++++|.+.. ...
T Consensus 156 ~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~ 230 (409)
T 4eu1_A 156 TPYSYYDPATKGLNLAGMLECLDKA-----PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFAT 230 (409)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHS-----CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred EEEEeecCcCCcCcHHHHHHHHHhC-----CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 999873 234678999999998642 124778888999999999999753 456799999999999943 222
Q ss_pred CC-----ccC-CC-CCCCCcEEEEcccccCCCCCCc--eEEE
Q 002866 344 DM-----DSL-GL-SLFRPDFIITSFYRVFGFDPTG--FGCL 376 (872)
Q Consensus 344 ~m-----ipL-DL-s~l~~DFlv~S~HK~fG~~PtG--vG~L 376 (872)
.- .++ .+ ....-.+++.|+.|.||. .| +|++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~--~G~riG~~ 270 (409)
T 4eu1_A 231 GQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGL--YGHRCGAL 270 (409)
T ss_dssp SCHHHHTHHHHHHHTTSSCCEEEEECTTTSSC--GGGCCEEE
T ss_pred CCcccchHHHHHHHhhCCcEEEEecCcccccC--ccCCceEE
Confidence 10 000 01 112234677899999983 46 6776
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.3e-08 Score=109.38 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=113.4
Q ss_pred HHHHHHHHHhc-----CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC----eEEEecccCchhHHHHHHHHHHcCcEEE
Q 002866 200 HDIKTRIMDHL-----NIPENEYGLVFTVSRGSAFKLLAESYPFHTNK----KLLTMFDYESQSVNWMAQSAKEKGAKVY 270 (872)
Q Consensus 200 eeARerIA~lL-----gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd----~ILT~~DhEHnSVl~~~~~AkrkGaeV~ 270 (872)
..+|+.||+++ |.+.+..+|++|+|+|+|+.+++..+. .+|+ .|++.. -.|... ...++..|+++.
T Consensus 132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~~~d~Vlv~~-p~y~~~---~~~~~~~g~~~v 206 (498)
T 3ihj_A 132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-SGGGKSRTGVMIPI-PQYPLY---SAVISELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-CCCGGGSEEEEEEE-SCCTHH---HHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-CCCCCCCCEEEEeC-CCchhH---HHHHHHcCCEEE
Confidence 45777777776 453222369999999999999999874 4553 776653 233433 344566799999
Q ss_pred EEeccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC-C
Q 002866 271 SAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK-D 344 (872)
Q Consensus 271 ~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~-~ 344 (872)
.++++.. +..++.++|+++|...+ ...++++|++...+|.||.++|.+ +++.|+++++++++|.+..... +
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~ 283 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAK---DHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYS 283 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHT---TTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCC
T ss_pred EeeccccccCCCCHHHHHHHHHhhh---ccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccC
Confidence 9998743 23679999999997531 112488999999999999999975 3456789999999999964321 0
Q ss_pred --CccCCCCCC----C------Cc-EEEEcccccC-CCCCCceEEEEE
Q 002866 345 --MDSLGLSLF----R------PD-FIITSFYRVF-GFDPTGFGCLLI 378 (872)
Q Consensus 345 --mipLDLs~l----~------~D-Flv~S~HK~f-G~~PtGvG~LyV 378 (872)
.....+..+ + +. +++.|++|.| |.+-..+|++++
T Consensus 284 ~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~ 331 (498)
T 3ihj_A 284 PDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEV 331 (498)
T ss_dssp TTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEE
T ss_pred CCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEE
Confidence 001112111 1 12 5677999998 521123566553
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-08 Score=109.65 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=131.2
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+.-|||..+. +..++.+++++.+ .+ ..+. +...+.+ .....+.+++++++++.+.+ |+||
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~-------~~-~~~~-~~~~~~~--~~~~~~la~~l~~~~~~~~~---v~~~ 113 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYK-------QL-QTLS-YFPMSQS--HEPAIKLAEKLNEWLGGEYV---IFFS 113 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHH-------HH-TTCC-CCCTTSE--EHHHHHHHHHHHHHHTSCEE---EEEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHH-------HH-HhcC-CcccccC--CHHHHHHHHHHHHhCCCCce---EEEe
Confidence 4678998766 2246778877533 11 1110 1011112 25667889999999987543 9999
Q ss_pred CCHHHHHHHHHhhCC-C---C---CCCeEEEecccCchhHHHHHHHHH----Hc-----CcEEEEEeccCCCCcc-----
Q 002866 223 VSRGSAFKLLAESYP-F---H---TNKKLLTMFDYESQSVNWMAQSAK----EK-----GAKVYSAWFKWPTLKL----- 281 (872)
Q Consensus 223 snATeALnLVaeslp-f---~---~Gd~ILT~~DhEHnSVl~~~~~Ak----rk-----GaeV~~Vpvd~p~g~I----- 281 (872)
+|+|+|+..++.... + . ++++|++....-|........... +. ...+..++.... .+.
T Consensus 114 ~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (452)
T 3n5m_A 114 NSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC-YRMPGIER 192 (452)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT-TTSTTTTT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc-ccCccCCc
Confidence 999999998776532 1 2 466777654322333222111000 00 012444443110 111
Q ss_pred -------CHHHHHHHHhhhhccCCCCCceEEEEeCc-cCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--C
Q 002866 282 -------CSTDLRKQISSKKRRKKDSAAGLFVFPVQ-SRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 282 -------d~edLe~~I~~~~rr~~~~~T~LVa~p~v-SNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
+.++|+++|... ...++++|.+... +| +|.+.| ++. .+.|+++|+++++|-+|. .|.. +
T Consensus 193 ~~~~~~~~~~~le~~l~~~----~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~ 267 (452)
T 3n5m_A 193 ENIYDVECVKEVDRVMTWE----LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKA 267 (452)
T ss_dssp SCGGGCHHHHHHHHHHHHH----CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hhhHHHHHHHHHHHHHHhc----CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCccccc
Confidence 168888888621 1125788888888 89 999998 774 467899999999999976 3220 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
..++.....+|++++| |.+|+.+..+|++++++++++.+.+
T Consensus 268 ~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~i~~~~~~ 308 (452)
T 3n5m_A 268 FGFMNYDVKPDIITMA--KGITSAYLPLSATAVKREIYEAFKG 308 (452)
T ss_dssp SGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHGGGCS
T ss_pred chhhhcCCCCCEEeec--ccccCCCcceEEEEECHHHHHHHhh
Confidence 2233344568988876 8776412568999999988776653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-09 Score=118.22 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=108.4
Q ss_pred cEEEeCCHHHHHHHHHhhC----CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC-CccCHHHHHHHHhh
Q 002866 218 GLVFTVSRGSAFKLLAESY----PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT-LKLCSTDLRKQISS 292 (872)
Q Consensus 218 ~VVFTsnATeALnLVaesl----pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~-g~Id~edLe~~I~~ 292 (872)
.|++|+|+++|+.+++..+ -..+||.|++..- .+........ ....|+++..++.+..+ ..++.++|++++.
T Consensus 167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P-~y~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~- 243 (546)
T 2zy4_A 167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMP-VFTPYIEIPE-LAQYALEEVAINADPSLNWQYPDSELDKLKD- 243 (546)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEES-CCHHHHHHHH-STTSCCEEEEEECBGGGTTBCCHHHHGGGGS-
T ss_pred eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCC-CCccHHHHHH-HcCCCcEEEEEecCcccCCCCCHHHHHHhhC-
Confidence 6999999999999998873 2468999876532 2333322211 23357999999886432 3478888866542
Q ss_pred hhccCCCCCceEEEEeCccCcccchhcHHH----HHHH--HHCCcEEEeeccccCCCCCccCCCCC--CCCcEEEEcccc
Q 002866 293 KKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALA--QQNHWHVLLDAGSLGPKDMDSLGLSL--FRPDFIITSFYR 364 (872)
Q Consensus 293 ~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~A--re~G~~VLVDAAQ~aG~~mipLDLs~--l~~DFlv~S~HK 364 (872)
+++++|.++..+|.||.++|.+. ++.| +++|+.+++|.++..... ....+.. .+.++++.|+.|
T Consensus 244 -------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~-~~~s~~~~~~~~~i~~~S~SK 315 (546)
T 2zy4_A 244 -------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD-DFQSLFAICPENTLLVYSFSK 315 (546)
T ss_dssp -------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGST-TCCCHHHHCGGGEEEEEESTT
T ss_pred -------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcc-cCcCHHHhCCCCEEEEEeCcc
Confidence 35889999999999999999753 4556 678999999999753210 1112211 146799999999
Q ss_pred cCCCCCCc--eEEEEEeCC-Ccccc
Q 002866 365 VFGFDPTG--FGCLLIKKS-VMGSL 386 (872)
Q Consensus 365 ~fG~~PtG--vG~LyVRk~-~i~~L 386 (872)
.||. .| +|++++.+. +++.+
T Consensus 316 ~~g~--~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 316 YFGA--TGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp TTTC--GGGCEEEEEEESSCHHHHH
T ss_pred ccCC--CCcceEEEEECCHHHHHHH
Confidence 9984 47 799999886 55544
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-08 Score=107.16 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=132.2
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhc-cCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLS-NHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~-~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+..|||..+. +..++.+++++.+ .+. .+. .+..++.+ .....+.+++++++++.+.+ .|+|
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~-------~~~-~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~~--~v~~ 116 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARR-------QME-ELPFYNTFFKTT--HPAVVELSSLLAEVTPAGFD--RVFY 116 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHH-------HHH-HCSCCCTTSSSC--CHHHHHHHHHHHHHSCTTCC--EEEE
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHH-------HHH-hccccccccccC--CHHHHHHHHHHHHhCCCCCC--EEEE
Confidence 4679998764 2346778887543 121 111 01111222 24567888999999988765 5999
Q ss_pred eCCHHHHHHHHHhhCCC-------CCCCeEEEecccCchhHHHHHHHH---------HHcCcEEEEEeccC----CCCcc
Q 002866 222 TVSRGSAFKLLAESYPF-------HTNKKLLTMFDYESQSVNWMAQSA---------KEKGAKVYSAWFKW----PTLKL 281 (872)
Q Consensus 222 TsnATeALnLVaeslpf-------~~Gd~ILT~~DhEHnSVl~~~~~A---------krkGaeV~~Vpvd~----p~g~I 281 (872)
|+|+|+|+..++..+.. ..++.||+....-|.......... ......+..+++.. +.. +
T Consensus 117 ~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~ 195 (459)
T 4a6r_A 117 TNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-M 195 (459)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-C
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-c
Confidence 99999999887765421 135667765432243332211110 00011344454322 111 2
Q ss_pred C--------HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--C
Q 002866 282 C--------STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 282 d--------~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
+ .++|+++|.... ..++.+|.+..+++.+|.+.| ++. .+.|+++|+++++|-++. .|.. +
T Consensus 196 d~~~~~~~~~~~le~~i~~~~----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~ 271 (459)
T 4a6r_A 196 TPDEFGVVAARWLEEKILEIG----ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEW 271 (459)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC----GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CHHHHHHHHHHHHHHHHHHcC----CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc
Confidence 3 677888776321 124788888888999999998 764 567899999999999976 3221 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
..++.....+|++++| |.+++ . ..+|++++++++++.+.
T Consensus 272 ~~~~~~~~~pdi~t~s--K~l~g-g~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 272 FGHQHFGFQPDLFTAA--KGLSS-GYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp SHHHHHTCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHHHH
T ss_pred chHhhcCCCCCeeehh--hhhcC-CCCCccceeeCHHHHHHhh
Confidence 1122234578999887 97764 2 35799999888776654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=110.00 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=133.4
Q ss_pred CCc--eecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 148 SPK--VCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 148 ~~~--IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~V 219 (872)
++. -|||..+. +..++.+++++.+ .+ ..+. +..+ +........+.+++++++++.+.+ .|
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~-------~~-~~~~-~~~~-~~~~~~~~~~L~e~la~~~~~~~~--~v 138 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTT-------QL-RVMN-HVMF-GGLTHEPAARLAKLLVDITPAGLD--TV 138 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHH-------HH-HHCS-CCCS-SSEECHHHHHHHHHHHHHSSTTEE--EE
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHH-------HH-Hhcc-Cccc-cccCCHHHHHHHHHHHHhCCCCcC--EE
Confidence 456 89998764 3347788887543 12 1211 1111 111124567899999999987665 59
Q ss_pred EEeCCHHHHHHHHHhhCC-C-----CCCC-eEEEecccCchhHHHHHHH----------HHHcCcEEEEEeccCCC-Ccc
Q 002866 220 VFTVSRGSAFKLLAESYP-F-----HTNK-KLLTMFDYESQSVNWMAQS----------AKEKGAKVYSAWFKWPT-LKL 281 (872)
Q Consensus 220 VFTsnATeALnLVaeslp-f-----~~Gd-~ILT~~DhEHnSVl~~~~~----------AkrkGaeV~~Vpvd~p~-g~I 281 (872)
+||+|+|+|+.+++.... + ++|+ .||+....-|......... .......+..+++.... ...
T Consensus 139 ~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (457)
T 3tfu_A 139 FFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPA 218 (457)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHH
Confidence 999999999998766532 1 1344 5665433223332221110 01111233444442211 113
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCCCCC
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLGLSL 352 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~ 352 (872)
+.++|+++|.... .++.+|.+.. ++|.+|.+.| ++. .+.|+++|+++++|-+|. .|.. +..++...
T Consensus 219 d~~~le~~l~~~~-----~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~ 293 (457)
T 3tfu_A 219 YSAAFEAQLAQHA-----GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAG 293 (457)
T ss_dssp HHHHHHHHHHHHG-----GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred HHHHHHHHHHhCC-----CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcC
Confidence 6778888886421 2578898888 9999999997 764 467899999999999976 3220 11222234
Q ss_pred CCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 353 FRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
..+|++++| |.+|+ . ..+|+++.++++++.+.
T Consensus 294 ~~pdiit~s--K~l~g-G~~~lG~v~~~~~i~~~~~ 326 (457)
T 3tfu_A 294 VSPDIMCVG--KALTG-GYLSLAATLCTADVAHTIS 326 (457)
T ss_dssp CCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHHHH
T ss_pred CCceEEEEC--hhhhC-CCcceEEEEEcHHHHHHhh
Confidence 578998666 87774 2 25899999998877763
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.2e-07 Score=102.81 Aligned_cols=208 Identities=10% Similarity=0.044 Sum_probs=118.3
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||+.+. +..++.+++++.+. +.... ......|++....+..+.+.++++++++...+ .|+|
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~----~~~~~--~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~--~v~f 132 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQP----QNVST--FINRPALGILPPENFVEKLRESLLSVAPKGMS--QLIT 132 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCG----GGHHH--HHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCC--EEEE
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHH----Hhhcc--cccccccccccHHHHHHHHHHHHHHhCCCCcC--EEEE
Confidence 45789998553 44578888886541 11110 11112345432223444444445556654444 5999
Q ss_pred eCCHHHHHHHHHhhCC------------C------------CCC---CeEEEecccCchhHHHHHHHH-----HHcCcEE
Q 002866 222 TVSRGSAFKLLAESYP------------F------------HTN---KKLLTMFDYESQSVNWMAQSA-----KEKGAKV 269 (872)
Q Consensus 222 TsnATeALnLVaeslp------------f------------~~G---d~ILT~~DhEHnSVl~~~~~A-----krkGaeV 269 (872)
|.++|+|+..++.... + ++| ++||+....-|.......... +..|..+
T Consensus 133 ~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~ 212 (472)
T 1ohv_A 133 MACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS 212 (472)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCC
T ss_pred eCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCC
Confidence 9999999887665431 1 135 677766444455444333221 1223221
Q ss_pred ---EEEeccCCCC-------------ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHH
Q 002866 270 ---YSAWFKWPTL-------------KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQ 328 (872)
Q Consensus 270 ---~~Vpvd~p~g-------------~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are 328 (872)
..+++..... ..+.++|+++|..... ...++++|++..++|++|.++| ++. .+.|++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~ 290 (472)
T 1ohv_A 213 FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRK--KKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290 (472)
T ss_dssp CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCC--CCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH
Confidence 2233321000 1246777777764210 0125899999888899999888 764 467899
Q ss_pred CCcEEEeecccc-CCCCCccCCCCCCC----CcEEEEccccc-CC
Q 002866 329 NHWHVLLDAGSL-GPKDMDSLGLSLFR----PDFIITSFYRV-FG 367 (872)
Q Consensus 329 ~G~~VLVDAAQ~-aG~~mipLDLs~l~----~DFlv~S~HK~-fG 367 (872)
+|+++++|.+|. .|..-..+.+..++ ||++++| |. +|
T Consensus 291 ~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~ 333 (472)
T 1ohv_A 291 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT 333 (472)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS
T ss_pred hCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc
Confidence 999999999997 44310113444444 8999888 97 44
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=105.70 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=132.6
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||..+. +..++.+++++.+ .+. .+.. +..++.++ ....+.+++++++++.+.+ .|+|
T Consensus 50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~-------~~~-~~~~~~~~~~~~~--~~~~~la~~l~~~~~~~~~--~v~~ 117 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYGRQKIADAIAT-------QAK-NLAYYHAYVGHGT--EASITLAKMIIDRAPKGMS--RVYF 117 (460)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHH-------HHH-HHSCCCCCTTCCC--HHHHHHHHHHHHHSCTTEE--EEEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHH-------HHH-hccccccccccCC--HHHHHHHHHHHhhCCCCcC--EEEE
Confidence 4678998755 2346778887543 121 1110 11112222 4566788999999877665 5999
Q ss_pred eCCHHHHHHHHHhhCCC-------CCCCeEEEecccCchhHHHHHHHH---------HHcCcEEEEEeccC----CCCcc
Q 002866 222 TVSRGSAFKLLAESYPF-------HTNKKLLTMFDYESQSVNWMAQSA---------KEKGAKVYSAWFKW----PTLKL 281 (872)
Q Consensus 222 TsnATeALnLVaeslpf-------~~Gd~ILT~~DhEHnSVl~~~~~A---------krkGaeV~~Vpvd~----p~g~I 281 (872)
|+|+|+|+..++..+.- ..++.|++....-|.......... ...+..+..+++.. ++..+
T Consensus 118 ~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 197 (460)
T 3gju_A 118 GLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSM 197 (460)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTC
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCcccc
Confidence 99999999887765421 134667665433344332221110 00112345555332 11112
Q ss_pred C--------HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--C
Q 002866 282 C--------STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 282 d--------~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
+ .++|+++|... ...++.+|.+..++|.+|.+.| ++. .+.|+++|+++++|-++. .|.. +
T Consensus 198 ~~~~~~~~~~~~le~~i~~~----~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~ 273 (460)
T 3gju_A 198 SEEQFSQHCADKLEEMILAE----GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTM 273 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred ChhHHHHHHHHHHHHHHHhc----CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc
Confidence 2 47788877632 1124788999999999999887 764 467899999999999976 4321 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
..++.....+|.+++| |.+++ . ..+|++++++++++.+.
T Consensus 274 ~~~~~~~~~pdi~t~s--K~l~g-G~~~lg~v~~~~~i~~~~~ 313 (460)
T 3gju_A 274 FGSDHYGIKPDLITIA--KGLTS-AYAPLSGVIVADRVWQVLV 313 (460)
T ss_dssp CHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHH
T ss_pred chHhhcCCCCCeeeee--hhhcC-CCCCeEEEEECHHHHHHHh
Confidence 1122223568998887 98875 2 24699999988776664
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=108.71 Aligned_cols=208 Identities=11% Similarity=0.054 Sum_probs=126.5
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+..|+|.++. ++.++.+++++.+ .+ ... ..++.+. ....+.+++++++++ .++ .|+||
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~-------~~-~~~---~~~~~~~--~~~~~l~~~l~~~~~-~~~--~v~~~ 114 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRE-------TL-ERG---LTFGAPS--PLEVALAKKVKRAYP-FVD--LVRFV 114 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHH-------HH-HTC---SCCSSCC--HHHHHHHHHHHHHCT-TCC--EEEEE
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHH-------HH-HhC---CCCCCCC--HHHHHHHHHHHHhCC-CCC--EEEEe
Confidence 4668888753 3356778877533 11 111 1233333 456788899999986 444 59999
Q ss_pred CCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH----------HHcCc------EEEEEeccCCCCccCHHH
Q 002866 223 VSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA----------KEKGA------KVYSAWFKWPTLKLCSTD 285 (872)
Q Consensus 223 snATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A----------krkGa------eV~~Vpvd~p~g~Id~ed 285 (872)
+|+|+|+.+++.. ..+..++.||+....-|.........+ ...|+ .+..+|. .+.++
T Consensus 115 ~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~ 188 (424)
T 2e7u_A 115 NSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY------NDPEG 188 (424)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT------TCHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC------CCHHH
Confidence 9999999987764 112234666655322233211110000 00132 2444442 26888
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccCCCC---CccCCCCCCCCcE
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLGPKD---MDSLGLSLFRPDF 357 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~aG~~---mipLDLs~l~~DF 357 (872)
|+++|.... .++++|.+..+++.||.+.| ++. .+. +++|+++++|.+|. |.. +..++.-...+|+
T Consensus 189 le~~l~~~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di 261 (424)
T 2e7u_A 189 LREVLKRRG-----EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDL 261 (424)
T ss_dssp HHHHHHHHG-----GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSE
T ss_pred HHHHHHhCC-----CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcch
Confidence 988886421 14678888777777999988 764 456 88999999999987 211 0011112245887
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+ |+.|.||+ ...+|++++++++++.+.+
T Consensus 262 ~--s~sK~l~~-G~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 262 V--TLGKILGG-GLPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp E--EECGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred h--hhhhhhhC-CcceEEEEEcHHHHhhhcc
Confidence 6 55699885 3458999999887776654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=102.54 Aligned_cols=218 Identities=9% Similarity=0.021 Sum_probs=126.1
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCc-CCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALY-GGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~y-gNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||..+. +..++.+++++.+ .+ ..+ ..+ .+........+.+++++++++...+ .|+|
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~-------~~-~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~--~v~~ 109 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKK-------QL-GKI---AHSTLLGMTNVPATQLAETLIDISPKKLT--RVFY 109 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHH-------HH-TTC---SCCCCSSSEEHHHHHHHHHHHHHSCTTEE--EEEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHH-------HH-Hhc---cCccccccCCHHHHHHHHHHHHhCCCCCC--EEEE
Confidence 4678998763 2346778777533 11 111 111 1111124566788999999976554 5999
Q ss_pred eCCHHHHHHHHHhhCCC---CC----CCeEEEecccCchhHHHHHHHHHH----c-----CcEEEEEeccCCCCc-----
Q 002866 222 TVSRGSAFKLLAESYPF---HT----NKKLLTMFDYESQSVNWMAQSAKE----K-----GAKVYSAWFKWPTLK----- 280 (872)
Q Consensus 222 TsnATeALnLVaeslpf---~~----Gd~ILT~~DhEHnSVl~~~~~Akr----k-----GaeV~~Vpvd~p~g~----- 280 (872)
|+|+|+|+.+++....- .+ +++|++....-|............ . ...+..+|.... .+
T Consensus 110 ~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 188 (448)
T 3dod_A 110 SDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYV-YRSESGD 188 (448)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCC-TTSSSCC
T ss_pred eCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCcc-ccCCccc
Confidence 99999999987765421 13 377776533223322211111000 0 122344444321 11
Q ss_pred ------cCHHHHHHHHhhhhccCCCCCceEEEEeCcc-Ccccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--C
Q 002866 281 ------LCSTDLRKQISSKKRRKKDSAAGLFVFPVQS-RVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 281 ------Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS-NvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
.+.++|+++|.... .++.+|.+..+. |.+|.+.| ++. .+.|+++|+++++|-++. .|.. +
T Consensus 189 ~~~~~~~d~~~le~~l~~~~-----~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~ 263 (448)
T 3dod_A 189 PDECRDQCLRELAQLLEEHH-----EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKM 263 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHG-----GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred hhhhhHHHHHHHHHHHHhCC-----CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccch
Confidence 13678888886321 246778888887 99998887 764 567899999999999976 3210 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCcccccC
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~P 388 (872)
..++.....+|.+++| |.+|+ . ..+|+++.++++++.+.+
T Consensus 264 ~a~~~~~~~~di~t~s--K~l~~-G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 264 FACEHENVQPDLMAAG--KGITG-GYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp SGGGGGTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHTTCS
T ss_pred hhhhhcCCCCCEEEec--ccccC-CcCceEEEEECHHHHHHhhh
Confidence 1233334568988877 98874 3 256999999887776653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-07 Score=100.03 Aligned_cols=223 Identities=10% Similarity=0.003 Sum_probs=130.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-CchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-psS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++..|||+.+. +..++.+++++.+ .+ ..+ ..+.. ........+.+++++++++.... ..|+
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~-------~~-~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~~v~ 126 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRS-------QV-GDF---THTCFMVTPYEGYVAVCEQLNRLTPVRGD-KRSA 126 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHH-------HH-TTC---SCCTTTTSCCHHHHHHHHHHHHHSSCCSS-EEEE
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHH-------HH-Hhc---ccccCCccCCHHHHHHHHHHHHhCCcCCC-CEEE
Confidence 34679998864 2347778777533 11 111 11111 11124556788899999875421 2699
Q ss_pred EeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHH-----HHcC-----cEEEEEeccCCC-----------
Q 002866 221 FTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSA-----KEKG-----AKVYSAWFKWPT----------- 278 (872)
Q Consensus 221 FTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~A-----krkG-----aeV~~Vpvd~p~----------- 278 (872)
||+|+|+|+.+++.... +..++.|++....-|.......... .+.+ ..+..+|+..+.
T Consensus 127 ~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 206 (451)
T 3oks_A 127 LFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELAT 206 (451)
T ss_dssp EESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTT
T ss_pred EeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccch
Confidence 99999999998765432 1223566655433344333222110 0011 145666654110
Q ss_pred -CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccCC
Q 002866 279 -LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSLG 349 (872)
Q Consensus 279 -g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipLD 349 (872)
...+.+.+.+.|.... ...++.+|.+..+++..|.+.| ++. .+.|+++|+++++|-+|. .+.. +..++
T Consensus 207 ~~~~~~~~~~~~l~~~~---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~ 283 (451)
T 3oks_A 207 DGELAAKRAITVIDKQI---GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACE 283 (451)
T ss_dssp CHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred hhHHHHHHHHHHHHhhc---CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhh
Confidence 0012333444444211 1124788888888889999988 874 567899999999999976 3210 11223
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.....+|.+++| |.+|. ...+|+++.++++++.+.+
T Consensus 284 ~~~~~pdi~t~s--K~l~~-G~~iG~v~~~~~~~~~~~~ 319 (451)
T 3oks_A 284 HEGIDPDLIVTA--KGIAG-GLPLSAVTGRAEIMDSPHV 319 (451)
T ss_dssp GGTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTCSCT
T ss_pred hcCCCCCeeeeh--hhhhC-CcceEEEEECHHHHhhhcC
Confidence 334568988776 98875 3458999999988777764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-07 Score=102.21 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=129.1
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcC-CCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYG-GAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg-NpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||+.+. +..++.+++++.+ .+. .+. .+. +........+.+++++++++.+..+ .|+|
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~-------~~~-~~~---~~~~~~~~~~~~~~la~~l~~~~~~~~~~-~v~~ 130 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIAD-------QAT-HFT---HTCFMVTPYEQYVQVAELLNALTPGDHDK-RTAL 130 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHH-------HHH-HCS---CCTTTTSCCHHHHHHHHHHHHHSSCSSCE-EEEE
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHH-------HHH-hcc---ccccCcCCCHHHHHHHHHHHHhCCCCCCc-EEEE
Confidence 4679998874 2347788887543 121 111 111 1111245668889999999864222 6999
Q ss_pred eCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHH-----HcC-----cEEEEEeccCC----CCccCHHHH
Q 002866 222 TVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAK-----EKG-----AKVYSAWFKWP----TLKLCSTDL 286 (872)
Q Consensus 222 TsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rkG-----aeV~~Vpvd~p----~g~Id~edL 286 (872)
|+|+|+|+.+++.... +..++.|++....-|........... +.+ ..+..+|+..+ .+....+.+
T Consensus 131 ~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (453)
T 4ffc_A 131 FNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAA 210 (453)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHH
T ss_pred eCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHH
Confidence 9999999998775431 12345666654333444333221100 011 14566666421 111112222
Q ss_pred H---HHHhhhhccCCCCCceEEEEeCccCcccchhc----HH-HHHHHHHCCcEEEeecccc-CCCC--CccCCCCCCCC
Q 002866 287 R---KQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQ-WMALAQQNHWHVLLDAGSL-GPKD--MDSLGLSLFRP 355 (872)
Q Consensus 287 e---~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le-~I~~Are~G~~VLVDAAQ~-aG~~--mipLDLs~l~~ 355 (872)
+ +.|.+. .....+.+|.+..+++..|.+.| ++ +.+.|+++|+++++|-+|. .+.. +..++.....+
T Consensus 211 ~~~~~~l~~~---i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~p 287 (453)
T 4ffc_A 211 RRAISRIETQ---IGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVP 287 (453)
T ss_dssp HHHHHHHHHH---TCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCC
T ss_pred HHHHHHHHHh---cCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCc
Confidence 2 222211 01124678888888888999988 76 4567899999999999975 3221 01122223468
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|++++| |.+|. ...+|+++.++++++.+.+
T Consensus 288 di~t~s--K~~~~-G~~~G~~~~~~~i~~~~~~ 317 (453)
T 4ffc_A 288 DIVTMA--KGIAG-GMPLSAVTGRAELMDAVYA 317 (453)
T ss_dssp SEEEEC--GGGGT-TSSCEEEEEEHHHHTTSCT
T ss_pred chHhhh--hhhcC-CcCeEEEEECHHHHhhhcc
Confidence 988877 98874 3458999999988777764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=103.47 Aligned_cols=220 Identities=8% Similarity=-0.023 Sum_probs=132.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +..++.+++++.+ .+ ..+.. +..++.+ .....+.+++++++++.+.+ .|+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~-------~~-~~~~~~~~~~~~~--~~~~~~lae~l~~~~~~~~~--~v~ 120 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAAR-------QM-RELPYYNTFFKTT--HVPAIALAQKLAELAPGDLN--HVF 120 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHH-------HH-HHCSCCCSSSSEE--CHHHHHHHHHHHHHSCTTEE--EEE
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHH-------HH-HhccccccccccC--CHHHHHHHHHHHHhCCCCCC--EEE
Confidence 34679998764 3346788887543 12 11110 0111112 24556788999999987655 599
Q ss_pred EeCCHHHHHHHHHhhCC-C------CCCCeEEEecccCchhHHHHHHHH----HH----cCcEEEEEeccC----CCCcc
Q 002866 221 FTVSRGSAFKLLAESYP-F------HTNKKLLTMFDYESQSVNWMAQSA----KE----KGAKVYSAWFKW----PTLKL 281 (872)
Q Consensus 221 FTsnATeALnLVaeslp-f------~~Gd~ILT~~DhEHnSVl~~~~~A----kr----kGaeV~~Vpvd~----p~g~I 281 (872)
||.|+|+|+..++.... + ..+++||+....-|.......... .+ ....+..+++.. +.. .
T Consensus 121 ~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~ 199 (472)
T 3hmu_A 121 FAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-M 199 (472)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-C
T ss_pred EeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-c
Confidence 99999999887766532 1 124566655432344332221110 00 011344555322 111 2
Q ss_pred C--------HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--C
Q 002866 282 C--------STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--M 345 (872)
Q Consensus 282 d--------~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--m 345 (872)
+ .++|+++|... ...++.+|.+..+++.+|.+.| ++. .+.|+++|+++++|-+|. .|.. +
T Consensus 200 ~~~~~~~~~~~~le~~i~~~----~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 275 (472)
T 3hmu_A 200 DPEEFGLARARELEEAILEL----GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW 275 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CHHHHHHHHHHHHHHHHHhc----CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc
Confidence 2 57788777632 1125789999889999999998 774 467899999999999976 3321 1
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCccccc
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~ 387 (872)
..++.....||++++| |.+|+ . ..+|++++++++++.+.
T Consensus 276 ~a~~~~~v~pdi~t~s--K~l~g-g~~plG~v~~~~~i~~~~~ 315 (472)
T 3hmu_A 276 FGTQTMGIRPHIMTIA--KGLSS-GYAPIGGSIVCDEVAHVIG 315 (472)
T ss_dssp CHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHT
T ss_pred chhHHhCCCCceeeec--hhhhc-CCcceEEEEECHHHHHhcc
Confidence 1122223568999887 98775 2 24699999998887773
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-07 Score=100.64 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=130.2
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEe
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFT 222 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFT 222 (872)
+.-|||..+. +..++.+++++.+ .+ ..+.....++.+ .....+..++++++++.+.+ .|+||
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~-------~l-~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~~--~v~~~ 120 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAH-------QA-MVLPYASPWYMA--TSPAARLAEKIATLTPGDLN--RIFFT 120 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHH-------HH-HHCCCCCTTTCB--CHHHHHHHHHHHTTSSTTCC--EEEEE
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHH-------HH-HhccCcccCccC--CHHHHHHHHHHHhcCCCCcC--EEEEe
Confidence 4678897654 3357788887543 12 121100011122 24566788899999976655 59999
Q ss_pred CCHHHHHHHHHhhCC-C------CCCCeEEEecccCchhHHHHHHHHHH----c-----CcEEEEEeccCC-CC-ccC--
Q 002866 223 VSRGSAFKLLAESYP-F------HTNKKLLTMFDYESQSVNWMAQSAKE----K-----GAKVYSAWFKWP-TL-KLC-- 282 (872)
Q Consensus 223 snATeALnLVaeslp-f------~~Gd~ILT~~DhEHnSVl~~~~~Akr----k-----GaeV~~Vpvd~p-~g-~Id-- 282 (872)
+|+|+|+..++.... + ..++.||+....-|............ . ...+..+++... .. ..+
T Consensus 121 ~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 200 (476)
T 3i5t_A 121 TGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQE 200 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchH
Confidence 999999888766541 1 12346665543234433322110000 0 112334443210 00 011
Q ss_pred ------HHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeecccc-CCCC--CccC
Q 002866 283 ------STDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-GPKD--MDSL 348 (872)
Q Consensus 283 ------~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-aG~~--mipL 348 (872)
.++|+++|.... ..++.+|.+..+++.+|.+.| ++. .+.|+++|+++++|-+|. .|.. +..+
T Consensus 201 ~~~~~~~~~le~~i~~~~----~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~ 276 (476)
T 3i5t_A 201 AFLDDLVQEFEDRIESLG----PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFAS 276 (476)
T ss_dssp HHHHHHHHHHHHHHHHHC----GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHH
T ss_pred HHHHHHHHHHHHHHHhcC----CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceee
Confidence 678888886421 124788888889999998777 764 467899999999999976 3221 1112
Q ss_pred C-CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCcccccC
Q 002866 349 G-LSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 349 D-Ls~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~~L~P 388 (872)
. .....||++++| |.+|+ . ..+|++++++++++.+.+
T Consensus 277 ~~~~~v~pdi~t~s--K~l~~-G~~plg~v~~~~~i~~~~~~ 315 (476)
T 3i5t_A 277 EKVFGVVPDIITFA--KGVTS-GYVPLGGLAISEAVLARISG 315 (476)
T ss_dssp HHTTCCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHTTSG
T ss_pred ecccCCCcchhhhh--hhhcC-CCcCeEEEEECHHHHHHHhc
Confidence 2 334568999887 98875 2 346899998887776653
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-06 Score=96.11 Aligned_cols=166 Identities=8% Similarity=-0.044 Sum_probs=108.4
Q ss_pred HHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC-C-CCC-CCeEEEecccCchhHHHHHHHHHHcCcEEEEEec--cCCC
Q 002866 204 TRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY-P-FHT-NKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF--KWPT 278 (872)
Q Consensus 204 erIA~lLgA~~dEY~VVFTsnATeALnLVaesl-p-f~~-Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv--d~p~ 278 (872)
...++.+|.+... ...+++++|.++..++-+. . -++ ++.||.+ ...|-|+..-+. -.|++.++++. +...
T Consensus 123 ld~L~~~G~~~~~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvp-Rn~HKSv~kAli---L~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 123 LDIIKLAGVHTVA-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMI---TAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHTTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHH---HTTCEEEEECEEEETTE
T ss_pred HHHHHHcCCCCCC-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEe-cchHHHHHHHHH---HcCCeEEEEeeeecccc
Confidence 3445566987543 6788899997655543332 1 122 4777765 345777764333 36899988865 2234
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCcc-CcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCC----C
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS-RVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLS----L 352 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS-NvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs----~ 352 (872)
+.+++++++++|..+ .+...+++++..+ +-.|..-||+. .+.||++|+++|||.|+.+... ...++. .
T Consensus 198 ~~id~e~le~aI~e~-----ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~-~~~~lp~sA~~ 271 (501)
T 3hl2_A 198 LRTDLKAVEAKVQEL-----GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSS-KCMHLIQQGAR 271 (501)
T ss_dssp EEECHHHHHHHHHHH-----CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCH-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhc-----CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhh-hhhhhHHHHHh
Confidence 778999999999864 1124444444443 33557789985 5678999999999998765420 001111 2
Q ss_pred CC-CcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 353 FR-PDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 353 l~-~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
++ +|+++.|.||++-. |.|-|+++.++.
T Consensus 272 ~GrAD~vVqS~HK~llv-pIGG~ii~~~d~ 300 (501)
T 3hl2_A 272 VGRIDAFVQSLDKNFMV-PVGGAIIAGFND 300 (501)
T ss_dssp HSCCCEEEEEHHHHHCC-CSSCEEEEESCH
T ss_pred cCCCcEEEeccccccee-ecCceEEEeCCH
Confidence 35 99999999999777 888777777653
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=2.4e-07 Score=104.85 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
....+..++|+++++ ..+ .|+|++++|+|+..++.... +..+++||+....-|........-....|+....+++.
T Consensus 140 ~~~~~Lae~L~~~~p-~~~--~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~ 216 (465)
T 2yky_A 140 ENEALFAEAVCDRFP-SID--LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV 216 (465)
Confidence 345678888999985 233 49999999999988776532 23346676543322443332220011234411222222
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHH-HHHHHHCCcEEEeeccccCCCC--CccC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQW-MALAQQNHWHVLLDAGSLGPKD--MDSL 348 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~aG~~--mipL 348 (872)
++ +.++|+++|... ..++++|.+..+.+.+|.+.| ++. .+.|+++|+++++|-++. ... +..+
T Consensus 217 ~~----d~~~l~~~l~~~-----~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~ 286 (465)
T 2yky_A 217 YN----DVEGTADLLKRH-----GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQ 286 (465)
Confidence 22 567788877531 135778877776666999888 664 456799999999999988 421 0112
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+.....+|+++ +-|++|+ ...+|+++.++++++.+.+
T Consensus 287 ~~~gv~pDi~t--~sK~lg~-G~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 287 EMLGISADLTT--LGKYIGG-GMSFGAFGGRRDLMERFDP 323 (465)
Confidence 22234588765 5599985 2338999999998888765
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=89.28 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcE-EEeCCHHHHHHHHHhhCCCCCCCeEEEec-cc-CchhHHHHHH----HHHHcCcEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGL-VFTVSRGSAFKLLAESYPFHTNKKLLTMF-DY-ESQSVNWMAQ----SAKEKGAKV 269 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~V-VFTsnATeALnLVaeslpf~~Gd~ILT~~-Dh-EHnSVl~~~~----~AkrkGaeV 269 (872)
++..-|+++..++|||+..+|.| |=--+++.|...|..++ .++||.|+... .| .|-+--..-. ....+-.++
T Consensus 100 ~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al-l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~ 178 (490)
T 3ou5_A 100 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFES 178 (490)
T ss_dssp HHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-CC-CCCEECBC---------------------------
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-cCCCCEEEecccCCCCcccccccCCCcccccccccccc
Confidence 45566999999999998765432 22357778877777776 48999987542 11 1111000000 011111234
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCCC---CC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DM 345 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~m 345 (872)
...+++..++.||.++++++.... +.+|+.+..-. .-..+|++.++ +|.+.|+++++|+||.+|. ..
T Consensus 179 ~~Y~vd~~t~~IDyd~~~~~A~~~-------kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~ 249 (490)
T 3ou5_A 179 MPYKLNPKTGLIDYNQLALTARLF-------RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV 249 (490)
T ss_dssp -CBCEETTTTEECHHHHHHHHHHH-------CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS
T ss_pred cccccCCCCCcccHHHHHHHHhhc-------CCCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccc
Confidence 444566667899999999988764 46788875533 33467787665 5789999999999986431 00
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
.|=.+. .+|+++++.||.|.+ |.| |+++.|++.
T Consensus 250 ~psP~~--~ADvVTtTTHKTLrG-PrG-G~Il~~~~~ 282 (490)
T 3ou5_A 250 IPSPFK--HADIVTTTTHKTLRG-ARS-GLIFYRKGV 282 (490)
T ss_dssp SCCGGG--TCSEEEEESSSTTCS-CSC-EEEEEECSE
T ss_pred cCCccc--cceEEeccccccccC-CCc-eEEEecccc
Confidence 222222 389999999999888 874 666667653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-05 Score=83.82 Aligned_cols=166 Identities=9% Similarity=0.083 Sum_probs=109.5
Q ss_pred HHHHHHHHHhc-CC-----CCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 200 HDIKTRIMDHL-NI-----PENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lL-gA-----~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.+.|+.|++++ +. ++++..|+.|.|+++|+.+++..+. +.+ |.|++.. ++.......++..|++++.+
T Consensus 75 ~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~----P~y~~~~~~~~~~g~~~~~v 149 (405)
T 3k7y_A 75 EDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTN----PPYINHVNMIESRGFNLKYI 149 (405)
T ss_dssp HHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEES----SCCHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeC----CCCHhHHHHHHHcCCeEEEE
Confidence 36888888876 32 2232247999999999999988753 346 8887652 22333445567789999999
Q ss_pred ec-cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC-ccCcccchhcHHH----HHHHHHCCcEEEeeccc-cCCCCC
Q 002866 273 WF-KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV-QSRVTGAKYSYQW----MALAQQNHWHVLLDAGS-LGPKDM 345 (872)
Q Consensus 273 pv-d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~-vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ-~aG~~m 345 (872)
|+ +..+..++.++|++.+... ++++++.+.. .+|.||..++.+. +..|++++++++.|-+- -...+
T Consensus 150 ~~~~~~~~~~d~~~l~~~l~~~------~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~- 222 (405)
T 3k7y_A 150 NFFDYNLIDINYDLFLNDLRNI------PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHT- 222 (405)
T ss_dssp CCEETTTTEECHHHHHHHHHHS------CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSS-
T ss_pred eccccccCCcCHHHHHHHHHhC------CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCC-
Confidence 88 3334578999999988642 2356766644 4799999999863 35678999999999772 12110
Q ss_pred ccCC-----C----CCCCCcEEEEcccccCCCCCCceEEEEE
Q 002866 346 DSLG-----L----SLFRPDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 346 ipLD-----L----s~l~~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
..+ + ....-=+++.|+=|.||-+=-.+|.+++
T Consensus 223 -~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 223 -NLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp -STTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred -CcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 010 1 1112236778999998831234788764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00022 Score=79.63 Aligned_cols=224 Identities=13% Similarity=0.006 Sum_probs=129.7
Q ss_pred HHHhhcccCCCC--ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc-CCC-
Q 002866 138 QLRANEYLHLSP--KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL-NIP- 213 (872)
Q Consensus 138 ~lR~~EFP~L~~--~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL-gA~- 213 (872)
..+++.-|..+- -+|.|..|-+|+.+.|.+|.. .+...-.++ .|.... -+.+.|+.+++++ |-.
T Consensus 38 ~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~--------~~~~~~~~~-~Y~p~~---G~p~lr~aia~~~~g~~~ 105 (420)
T 4h51_A 38 RAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQ--------LLLDMNLDY-EYLPIS---GYQPFIDEAVKIIYGNTV 105 (420)
T ss_dssp HHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHH--------HHHHTTCCC-CCCCTT---CCHHHHHHHHHHHHC---
T ss_pred HHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHH--------HHhcCCCCC-CCCCcC---ChHHHHHHHHHHhcCCCc
Confidence 345443443322 479999998898888877632 122221111 132111 1235777778765 432
Q ss_pred -CCCCcEEEeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcE-EEEEec-cCCCCccCHHHHH
Q 002866 214 -ENEYGLVFTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAK-VYSAWF-KWPTLKLCSTDLR 287 (872)
Q Consensus 214 -~dEY~VVFTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae-V~~Vpv-d~p~g~Id~edLe 287 (872)
.+....+-|.++|.|+.+.+..+. ..+||+|++..-. ..+... ..+..|.+ |...+. +..+..++.+.+.
T Consensus 106 ~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~-w~~y~~---i~~~aG~~~V~~~~~~~~~~~~~d~~~~~ 181 (420)
T 4h51_A 106 ELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPT-WPNHYG---VVKAAGWKNICTYAYYDPKTVSLNFEGMK 181 (420)
T ss_dssp CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESC-CTHHHH---HHHHTTCCCEEEEECEEGGGTEECHHHHH
T ss_pred cccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCC-chhHHH---HHHHcCCeEEEeeccccccccCCCHHHHH
Confidence 222123448999998877655432 2589998765321 112222 23446765 443332 2223457888888
Q ss_pred HHHhhhhccCCCCCceEEEEeCccCcccchhcHH-H---HHHHHHCCcEEEeecc-ccCCCCCccCC-------CCCCCC
Q 002866 288 KQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-W---MALAQQNHWHVLLDAG-SLGPKDMDSLG-------LSLFRP 355 (872)
Q Consensus 288 ~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~---I~~Are~G~~VLVDAA-Q~aG~~mipLD-------Ls~l~~ 355 (872)
+.+.. ..++++++.++..+|.||..++.+ | +..|+++++.++.|-+ |-...+-...+ ......
T Consensus 182 ~~l~~-----~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 256 (420)
T 4h51_A 182 KDILA-----APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIE 256 (420)
T ss_dssp HHHHH-----SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHhc-----cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCce
Confidence 87764 234678888888899999999986 3 3566899999999988 43322100000 011122
Q ss_pred cEEEEcccccCCCCCCc--eEEEEEeCCCcc
Q 002866 356 DFIITSFYRVFGFDPTG--FGCLLIKKSVMG 384 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~ 384 (872)
=+++.|+=|.||. .| +|+|.+.....+
T Consensus 257 ~i~~~s~SK~~~~--~G~RvG~~~~~~~~~~ 285 (420)
T 4h51_A 257 VLLAQSFSKNMGL--YSERAGTLSLLLKDKT 285 (420)
T ss_dssp CEEEEECTTTSCC--GGGCEEEEEEECSCHH
T ss_pred EEEEecccccccc--ccCceEEEEecccCHH
Confidence 3677799998873 35 999988776544
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=82.43 Aligned_cols=210 Identities=14% Similarity=0.079 Sum_probs=121.5
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||+.+. +--.+.+++++.+ .+.....++.+.. ...+.-+.|++.+..- ..|.|
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~-----------q~~~~~~~~~~~~--~~~~lae~l~~~~p~~---~~v~f 148 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIE-----------AMQGGINLTGHNL--LEGRLARLICERFPQI---EQLRF 148 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHH-----------HHHTCSCCCSEES--SHHHHHHHHHHHSTTC---SEEEE
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHH-----------HHhcCCCccCCcH--HHHHHHHHHHHhCCCC---CEEEE
Confidence 45789998653 2245777777533 1111123343332 2234556788877531 26999
Q ss_pred eCCHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHH--HHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQS--AKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~--AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
++++|||....+... .+...++|+.....-|......... .......+..+|.+ +.+.+++.|.+.
T Consensus 149 ~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n------d~~~l~~~l~~~----- 217 (454)
T 4ao9_A 149 TNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN------DAQTARAQIERH----- 217 (454)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT------CHHHHHHHHHHT-----
T ss_pred eCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc------hHHHHHHHHhhc-----
Confidence 999999877654321 1222345665433223322111000 00011233444432 578888888753
Q ss_pred CCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccCCCCCccCC---CCCCCCcEEEEcccccCCCCC
Q 002866 299 DSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLGPKDMDSLG---LSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~aG~~mipLD---Ls~l~~DFlv~S~HK~fG~~P 370 (872)
.+++..|.+--+....|.+.| ++.+ ++|+++|+++++|=+|. |. .-..- .-.+.||+++++ |.+|+ -
T Consensus 218 ~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR-~G~~~a~e~~gv~PDi~t~g--K~lgg-G 292 (454)
T 4ao9_A 218 GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SR-LAPHGLANKLGIRSDLTTLG--KYIGG-G 292 (454)
T ss_dssp GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GG-GSTTCHHHHHTCCCSEEEEE--GGGGT-T
T ss_pred CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CC-CccccchhccCCCCcEEEec--cccCC-C
Confidence 234677777778888999998 6544 56799999999999986 32 01111 112468998765 65443 1
Q ss_pred CceEEEEEeCCCcccccCC
Q 002866 371 TGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 371 tGvG~LyVRk~~i~~L~P~ 389 (872)
.-+|++..++++++.+.|.
T Consensus 293 ~Piga~~~~~ei~~~~~~~ 311 (454)
T 4ao9_A 293 MSFGAFGGRADVMALFDPR 311 (454)
T ss_dssp SSCEEEEECHHHHGGGCTT
T ss_pred CcceeeeeHHHHHHHHhhc
Confidence 2389999999998888653
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.073 Score=60.13 Aligned_cols=226 Identities=9% Similarity=0.027 Sum_probs=116.9
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCc-CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHA-LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~-~ygNpsS~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
++.-|||..+. +--.+.+++++.+ -...+. +. .++.|+ +...+.-+++++++..+.- ..|.
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~--------q~~~~~-~~~~~~~~~--~~~~~lae~L~~~~p~~~~-~~v~ 129 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQE--------AAAHFT-HTCFMVTPY--EGYVAVTEQLNRLTPGDHA-KRTV 129 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHH--------HHHHCS-CCTTTTSCC--HHHHHHHHHHHHHSSCSSC-EEEE
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHH--------HHhhcc-CcccCccCc--HHHHHHHHHHHHhCCCCCC-cEEE
Confidence 45789997543 3345677777533 112221 22 223343 2233455677888754322 2588
Q ss_pred EeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHH-----HHc-----CcEEEEEeccCCC----Ccc-CHH
Q 002866 221 FTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSA-----KEK-----GAKVYSAWFKWPT----LKL-CST 284 (872)
Q Consensus 221 FTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~A-----krk-----GaeV~~Vpvd~p~----g~I-d~e 284 (872)
|+.++|||+...+.- ..+....+|++....-|....+..... .+. ...+..+|...+. ... +.+
T Consensus 130 f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (456)
T 4atq_A 130 LFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAE 209 (456)
T ss_dssp EESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHH
T ss_pred EeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHH
Confidence 999999987654431 111223456654332244333222110 001 1235556653221 111 122
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~D 356 (872)
.++..+....+.....+..-|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.+ |.. +.-...-.+.||
T Consensus 210 ~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PD 289 (456)
T 4atq_A 210 AAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPD 289 (456)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS
T ss_pred HHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCc
Confidence 33332221111111224556666666677898877 3434 467999999999999875 321 111122234699
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 357 FIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++++ |.+|+ =.=+|++.++++.++.+.+
T Consensus 290 ivt~g--K~lgg-g~P~~av~~~~~i~~~~~~ 318 (456)
T 4atq_A 290 IITMA--KGIAG-GLPLSAITGRADLLDAVHP 318 (456)
T ss_dssp EEEEC--GGGGT-TSSCEEEEEEHHHHTTSCT
T ss_pred hhhhh--hcccC-cCCceeeEecHHHHhcccc
Confidence 99987 54432 1127899999988877654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.31 Score=55.26 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=114.8
Q ss_pred CceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhcc-CcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 149 PKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSN-HALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~-~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
+.-|||..+. +--.+.+++++.+ -...+.. +..++.++ +...+.-++|++++..+-+ .|.|
T Consensus 66 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~--------q~~~l~~~~~~~~~~~--~~~~~lAe~L~~~~p~~~~--~v~f 133 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGFDHKGLIDAAKA--------QYERFPGYHAFFGRMS--DQTVMLSEKLVEVSPFDSG--RVFY 133 (473)
T ss_dssp CCEEEETTTTTTTCTTCSCCHHHHHHHHH--------HHHHCCCCCCCTTEEE--HHHHHHHHHHHHHSSCSSC--EEEE
T ss_pred CCEEEEcccCHHHhhccCCCHHHHHHHHH--------HHHhcccccccccccC--HHHHHHHHHHHhhCCCCcc--EEEE
Confidence 4689997554 2234667776532 1122211 12334343 2223444677888765543 5999
Q ss_pred eCCHHHHHHHHHhh---C---CCCCCC-eEEEecccCchhHHHHHHHH-----HHcC---cEEEEEeccC-----CCCcc
Q 002866 222 TVSRGSAFKLLAES---Y---PFHTNK-KLLTMFDYESQSVNWMAQSA-----KEKG---AKVYSAWFKW-----PTLKL 281 (872)
Q Consensus 222 TsnATeALnLVaes---l---pf~~Gd-~ILT~~DhEHnSVl~~~~~A-----krkG---aeV~~Vpvd~-----p~g~I 281 (872)
+.++|||+...+.- | .-+++. +||+....-|.......... +..+ ..+..++... ..+..
T Consensus 134 ~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 213 (473)
T 4e3q_A 134 TNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGET 213 (473)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCC
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccch
Confidence 99999986654432 2 112333 46655432244333222110 0001 1123333210 00111
Q ss_pred -------CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH----HHH-HHHHHCCcEEEeeccccC-CCC--Cc
Q 002866 282 -------CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY----QWM-ALAQQNHWHVLLDAGSLG-PKD--MD 346 (872)
Q Consensus 282 -------d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL----e~I-~~Are~G~~VLVDAAQ~a-G~~--mi 346 (872)
..+++++.|... .......|.+.-+....|.+.|- +.+ +.|+++|+++++|=+|.+ |.. +.
T Consensus 214 ~~~~~~~~~~~l~~~i~~~----~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~f 289 (473)
T 4e3q_A 214 EEQFVARLARELEETIQRE----GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW 289 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSC
T ss_pred hhHHHHHHHHHHHHHHHhh----CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchh
Confidence 123445555432 12246777777787888988873 334 467999999999999864 220 11
Q ss_pred cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
-...-...||+++++ |-+|+.=.=+|++.+++++.+.+.
T Consensus 290 a~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~ 328 (473)
T 4e3q_A 290 GCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSKRLE 328 (473)
T ss_dssp HHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHH
T ss_pred HHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHHHhc
Confidence 111123569999875 654320011799999998876554
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.28 Score=52.34 Aligned_cols=117 Identities=8% Similarity=0.035 Sum_probs=72.1
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
|..+..|.+.+.++|.+.|.++.. ++++++. .+++.+.|+|.=.+..-++...|.+.+.++||.++
T Consensus 268 l~~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~ 333 (390)
T 3b8x_A 268 LPRFISVRRKNAEYFLDKFKDHPY-----------LDVQQET---GESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECR 333 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSS-----------EEECCCC---SBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCB
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-----------cccCCCC---CCcccEEEEEEecCcCcccHHHHHHHHHHCCCCee
Confidence 457888999999999999987643 6787763 45666667653211112456666666677899999
Q ss_pred e---ccccc--ccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHH
Q 002866 782 I---GFLSH--IRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFV 849 (872)
Q Consensus 782 ~---G~l~~--i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fv 849 (872)
. |.+|. +.+... +...+. ..+ .. ...--++||.|++..+|.|||+++++.|
T Consensus 334 ~~~~~~~~~~~~~~~~~-----~~~~~~----~~~----~~----~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 334 PIVTGNFLKNTDVLKYF-----DYTVHN----NVD----NA----EYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CSTTSSGGGCHHHHTTC-----EEEESS----CCH----HH----HHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred eecCCchhhcchhhhcC-----CCCCcC----CCh----HH----HHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 8 44442 222110 000000 000 00 0011248999999999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.041 Score=57.14 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=55.8
Q ss_pred EEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEeec---------ccccccccCCcccCCCCCcCCCCC
Q 002866 737 VHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGIG---------FLSHIRILDSPRQQGGSSSLDDTT 807 (872)
Q Consensus 737 V~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~G---------~l~~i~~~d~~~~~~g~~~~~~~~ 807 (872)
+++|++.. ..+|++++|.+. ++..+.+++++.||.++.+ ..|.... +... .
T Consensus 234 ~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~--~~~~----~------ 293 (331)
T 1pff_A 234 HEIAKKQM-KMFGSMIAFDVD-------GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMT--HAGV----P------ 293 (331)
T ss_dssp HHHHHHHC-SSCCSEEEEECS-------SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHT--STTS----C------
T ss_pred HHHHHhhC-CCCceEEEEEEC-------CHHHHHHHHHhCCCceeccCCCCcceeeecchhhc--cccc----C------
Confidence 45555433 247999999985 4678999999999977654 2332110 0000 0
Q ss_pred CCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 808 LCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 808 ~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
.......|.. -++||+|+|..+|.+||++|.+.+.+.
T Consensus 294 ~~~~~~~g~~--------~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 294 KEEREAAGLT--------DNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHTTCC--------TTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCC--------CCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 0000001111 259999999999999999999998764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.39 Score=52.56 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCceEEEEe-CCCCC-------------ccccceEEEEeccCCCCccChHHHHHHHHH
Q 002866 710 RFLINWLVTSLLQLRFSDSDGESRAHLVHIY-GPKIK-------------YERGAAVAFNVRDKERGLINPEVVQKLAEK 775 (872)
Q Consensus 710 r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IY-Gp~~~-------------~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr 775 (872)
..+..+|...|.+++. |+++ .|... ..+|++|+|++.+ . +..+.++.++
T Consensus 295 ~~~a~~l~~~L~~~p~-----------v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~-----~-~~~~~~~~~~ 357 (421)
T 2ctz_A 295 VENTLHLAHWLLEQPQ-----------VAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG-----G-YEAAKRFISR 357 (421)
T ss_dssp HHHHHHHHHHHHTCTT-----------EEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-----H-HHHHHHHHHT
T ss_pred HHhHHHHHHHHHhCCC-----------eeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCC-----C-HHHHHHHHHh
Confidence 3678888888887543 5554 34421 3579999999975 2 6778889887
Q ss_pred cCC---eEeeccccc----ccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHH
Q 002866 776 EGI---SLGIGFLSH----IRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAF 848 (872)
Q Consensus 776 ~~I---sLr~G~l~~----i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~F 848 (872)
.++ .++.|..+. +....+... . ... -...|.. -+.||+|+|+ ||++.|++-
T Consensus 358 l~~~~~~~~~G~~~sl~~~~~~~~h~~~-------~--~~~-~~~~g~~--------~~~vRlS~g~----e~~~~li~~ 415 (421)
T 2ctz_A 358 LKLISHLANVGDTRTLAIHPASTTHSQL-------S--PEE-QAQAGVS--------PEMVRLSVGL----EHVEDLKAE 415 (421)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTTTTTS-------C--HHH-HHHHTCC--------TTEEEEECCS----SCHHHHHHH
T ss_pred CCcceecccCCCCCceeeCCcccccccC-------C--HHH-HHhcCCC--------CCeEEEEeCC----CCHHHHHHH
Confidence 665 445563322 111111000 0 000 0001111 3699999997 688888888
Q ss_pred HHHhc
Q 002866 849 VAKFL 853 (872)
Q Consensus 849 va~Fl 853 (872)
+.+-|
T Consensus 416 l~~al 420 (421)
T 2ctz_A 416 LKEAL 420 (421)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77754
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.67 Score=48.45 Aligned_cols=125 Identities=10% Similarity=-0.047 Sum_probs=72.5
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCcccc-ceEEEEeccCCCCcc-ChHHHHHHHHHc
Q 002866 699 MLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERG-AAVAFNVRDKERGLI-NPEVVQKLAEKE 776 (872)
Q Consensus 699 ~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG-~~VAFNv~d~~G~~v-~p~~VqkLAdr~ 776 (872)
.-++..+..|.+.+.++|...|.++.. +++++|......+ .++.+.+.+ . -+ +...+.+.+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~L~~~ 308 (375)
T 2fnu_A 243 LKKAPFLMQKREEAALTYDRIFKDNPY-----------FTPLHPLLKDKSSNHLYPILMHQ-K--FFTCKKLILESLHKR 308 (375)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTCSS-----------EEESGGGCSSCCCCSCEEEEECG-G--GGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-----------ccccCCCCCCCcceEEEEEEeCc-c--ccchHHHHHHHHHHC
Confidence 345778889999999999999998653 6888763211122 233344322 1 12 455555555678
Q ss_pred CCeEeeccccccccc-CCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 777 GISLGIGFLSHIRIL-DSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 777 ~IsLr~G~l~~i~~~-d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
||.++.++. +... ..+.. + . . ... .+.. ....-++||+|++..+|.||++++++.+.+++.
T Consensus 309 gi~v~~~~~--p~~~~~~~~~--~-~--~-~~~-~~~~--------~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 309 GILAQVHYK--PIYQYQLYQQ--L-F--N-TAP-LKSA--------EDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp TEECBCCCC--CGGGSHHHHH--H-H--C-CCC-CHHH--------HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcccccc--ccccchhhhc--C-C--C-ccC-ChHH--------HHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 999985431 2100 00000 0 0 0 000 0000 001125899999999999999999999998753
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.71 Score=48.80 Aligned_cols=122 Identities=9% Similarity=0.011 Sum_probs=74.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCC--CccccceEEEEeccCCCCccChHHHHHHHHHcCC
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKI--KYERGAAVAFNVRDKERGLINPEVVQKLAEKEGI 778 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~--~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~I 778 (872)
++..+..|.+.+.++|...|.++. +++|++.. ....+.++.|.+-+.. .-++...|.+.+.++||
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~gi 324 (393)
T 1mdo_A 258 KLDALNARRAAIAAQYHQAMADLP------------FQPLSLPSWEHIHAWHLFIIRVDEAR-CGITRDALMASLKTKGI 324 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSS------------CEECCCCSSCEECCCSCEEEECCHHH-HSSCHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------------cccccCCCCCCCceeEEEEEEecccc-cccCHHHHHHHHHhCCC
Confidence 356777888889999999998753 36665431 1123346777764200 01456667666677899
Q ss_pred eEeecccccc---cccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 779 SLGIGFLSHI---RILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 779 sLr~G~l~~i---~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
.++.|..|.. .+...+ ..+. .+ ....+.-.+||++++..+|.||++++++.|.+++.
T Consensus 325 ~v~~~~~~~~~~~~~~~~~--~~~~---------------~~--~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 325 GTGLHFRAAHTQKYYRERF--PTLT---------------LP--DTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp CCBCCCCCGGGSHHHHHHS--TTCC---------------CH--HHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CcccccCccccChhhhccC--CccC---------------Ch--hHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876521 110000 0000 00 00000123899999999999999999999998654
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.62 Score=50.66 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=75.1
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccCh-HHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINP-EVVQ 770 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p-~~Vq 770 (872)
..|++++. +..+..|++.+.++|.+.|.++. +.++++. .+|+++.|.+-+ .... .+++
T Consensus 306 ~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~~---~~~~~~~~~~~~----~~~~~~l~~ 364 (427)
T 2w8t_A 306 TSIRKLMT--AHEKRERLWSNARALHGGLKAMG------------FRLGTET---CDSAIVAVMLED----QEQAAMMWQ 364 (427)
T ss_dssp HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHT------------CEESCSS---CCSSEEEEEESS----HHHHHHHHH
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC------------CcccCCC---CCCCEEEEEECC----HHHHHHHHH
Confidence 34555543 57788899999999999998873 3566542 478999998853 1223 3445
Q ss_pred HHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHH
Q 002866 771 KLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVA 850 (872)
Q Consensus 771 kLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva 850 (872)
+|.+ +||.++.|..... . . +-+.+|+|++...|.||++++++.+.
T Consensus 365 ~L~~-~Gi~v~~~~~~~~-----~-------------------~----------~~~~lRi~~~~~~t~e~i~~~~~~l~ 409 (427)
T 2w8t_A 365 ALLD-GGLYVNMARPPAT-----P-------------------A----------GTFLLRCSICAEHTPAQIQTVLGMFQ 409 (427)
T ss_dssp HHHH-TTEECEEECTTTS-----C-------------------T----------TCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHH-CCeEEeeeCCCCC-----C-------------------C----------CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5554 5999887743210 0 0 13589999999999999999999999
Q ss_pred HhcC
Q 002866 851 KFLN 854 (872)
Q Consensus 851 ~Fld 854 (872)
+++.
T Consensus 410 ~~l~ 413 (427)
T 2w8t_A 410 AAGR 413 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.2 Score=54.40 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=50.3
Q ss_pred cceEEEEeccCCCCccChHHHHHHHHHcCC---eEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccc
Q 002866 749 GAAVAFNVRDKERGLINPEVVQKLAEKEGI---SLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIR 825 (872)
Q Consensus 749 G~~VAFNv~d~~G~~v~p~~VqkLAdr~~I---sLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 825 (872)
|++|+|++.+ .+..++++.+..++ .++.|..|.... .+.. ..+.. . .... -...|..
T Consensus 305 ~~i~~~~l~~------~~~~~~~~l~~l~~~~~~~s~G~~~s~~~--~p~~-~~h~~-~-~~~~-~~~~g~~-------- 364 (393)
T 1n8p_A 305 GGMISFRIKG------GAEAASKFASSTRLFTLAESLGGIESLLE--VPAV-MTHGG-I-PKEA-REASGVF-------- 364 (393)
T ss_dssp CSEEEEEESS------CHHHHHHHHHHCSSSEECSCCCCSSCEEE--CTTT-TTSCS-S-CTTT-TTTTSCC--------
T ss_pred ccEEEEEeCC------cHHHHHHHHhhCCcceECCCCCCCcceee--cccc-ccccc-c-CHHH-HHhcCCC--------
Confidence 8999999964 25678888886654 556675554211 0000 00000 0 0000 0011211
Q ss_pred eeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 826 VEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 826 ~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
-+.||+|+|+.++.++|.+|.+.+.+.
T Consensus 365 ~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 365 DDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 369999999999999999999999874
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.69 Score=48.55 Aligned_cols=127 Identities=13% Similarity=0.025 Sum_probs=74.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHH
Q 002866 694 LDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLA 773 (872)
Q Consensus 694 Ldh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLA 773 (872)
+.....-++..+..|.+.+.++|...|..+.. . +++..+.. ......+.|.+.. .+...+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~--~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~L 302 (374)
T 3uwc_A 239 IANRLMNQLETITEKRRGIAHLYDQSFVDLSE--------F--IDVPVRRE-GVYHVFHIYVLRV-----KYRDQLFQYL 302 (374)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTT--------T--EECCCCCT-TEECCCSSEEEEE-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------e--EEeccCCC-CCceeeEEEEEEc-----CCHHHHHHHH
Confidence 34444456778889999999999999988652 0 12221110 1122224455543 2456666666
Q ss_pred HHcCCeEeecc----cccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHH
Q 002866 774 EKEGISLGIGF----LSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFV 849 (872)
Q Consensus 774 dr~~IsLr~G~----l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fv 849 (872)
.++||.++.|+ .+.+.+... +.. .. ..+ . .....-.+||++++..+|.|||+++++.|
T Consensus 303 ~~~gi~v~~~~~~~~~~~~~~~~~-----~~~----~~-~~~----~----~~~~~~~~lrl~~~~~~t~edi~~~~~~l 364 (374)
T 3uwc_A 303 KDNGIEVKIHYPIAMHLQPAAKSL-----GYQ----QG-DFP----M----AEKHGEAVITLPAHPYLTEEEINYIIKKV 364 (374)
T ss_dssp HHTTBCCBCSCSSCGGGSGGGGGG-----CCC----TT-SCH----H----HHHHHHHEEEECCCTTSCHHHHHHHHHHH
T ss_pred HHCCCccccCCCCccccChhhhhc-----CCc----cC-CCc----c----HHHHHhCEEEccCCCCCCHHHHHHHHHHH
Confidence 77799999986 222221100 000 00 000 0 00011269999999999999999999999
Q ss_pred HHhcC
Q 002866 850 AKFLN 854 (872)
Q Consensus 850 a~Fld 854 (872)
.+++.
T Consensus 365 ~~~l~ 369 (374)
T 3uwc_A 365 REFYL 369 (374)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.91 Score=48.20 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=74.0
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQK 771 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~Vqk 771 (872)
..|++++. +..+..|.+.+.++|...|.++.. +++ | .+|..+.|++-+ .++...+.+
T Consensus 290 ~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~------------~~~-~----~~~~~~~~~~~~----~~~~~~l~~ 346 (401)
T 1fc4_A 290 KVLEMVEA--GSELRDRLWANARQFREQMSAAGF------------TLA-G----ADHAIIPVMLGD----AVVAQKFAR 346 (401)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTC------------CBC-C----SSSSEEEEEEEC----HHHHHHHHH
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCC------------ccc-C----CCCCEEEEEcCC----hHHHHHHHH
Confidence 34555544 467888999999999999988732 334 2 478899998843 133444444
Q ss_pred HHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 772 LAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 772 LAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
.+.++||.++.|..+.. . . +-..||+|+++..|.+|+.++++.+.+
T Consensus 347 ~l~~~gi~v~~~~~~~~-----~-------------------~----------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (401)
T 1fc4_A 347 ELQKEGIYVTGFFYPVV-----P-------------------K----------GQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp HHHHTTEECCEECTTSS-----C-------------------T----------TCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCcEEeeecCCCC-----C-------------------C----------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44556999988754310 0 0 024899999999999999999999998
Q ss_pred hcC
Q 002866 852 FLN 854 (872)
Q Consensus 852 Fld 854 (872)
++.
T Consensus 393 ~~~ 395 (401)
T 1fc4_A 393 IGK 395 (401)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=89.76 E-value=2 Score=44.41 Aligned_cols=88 Identities=19% Similarity=0.133 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEeec
Q 002866 704 KTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGIG 783 (872)
Q Consensus 704 ~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~G 783 (872)
.+..|.+.+.++|...|.++.. ++++.| ..+..+.+.+- ..++++| .++||.++.|
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~g-----------~~~~~~----~~~~~~~~~~~--------~~~~~~l-~~~gi~v~~g 319 (356)
T 1v72_A 264 RNARKANAAAQRLAQGLEGLGG-----------VEVLGG----TEANILFCRLD--------SAMIDAL-LKAGFGFYHD 319 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTT-----------EEEESC----CCSSEEEEEEC--------HHHHHHH-HHTTCBCBCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCC-----------cEEccC----CCccEEEEEcC--------HHHHHHH-HhcCeEEecc
Confidence 3556778888999999987642 566665 35677777652 3566666 5668888766
Q ss_pred ccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 784 FLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 784 ~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
. +. -+.||+++++.+|.||+.++++-+.++++
T Consensus 320 ~-----~~----------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 320 R-----WG----------------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp S-----SS----------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred c-----cC----------------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 4 10 02799999999999999999999999764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=0.57 Score=52.47 Aligned_cols=80 Identities=25% Similarity=0.212 Sum_probs=48.8
Q ss_pred cccceEEEEeccCCCCccChHHHHHHHHHc---CCeEeecccccc----cccCCcccCCCCCcCCCCCCCCCCCCCCcCC
Q 002866 747 ERGAAVAFNVRDKERGLINPEVVQKLAEKE---GISLGIGFLSHI----RILDSPRQQGGSSSLDDTTLCRPMDNGRHDG 819 (872)
Q Consensus 747 ~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~---~IsLr~G~l~~i----~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~ 819 (872)
.+|++|+|++.+ .+..++++.++. +|.++.|..|.. ....+..... .. -...|..
T Consensus 357 g~g~ivsf~l~~------~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~-~~---------~~~~g~~-- 418 (445)
T 1qgn_A 357 GFGGAVSFEVDG------DLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ-SD---------RAKYGIM-- 418 (445)
T ss_dssp CCCSEEEEEESS------CHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCH-HH---------HHTTTCC--
T ss_pred CCCcEEEEEECC------CHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCH-HH---------HHhcCCC--
Confidence 379999999964 345677888766 577778866542 1000000000 00 0011111
Q ss_pred CCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 820 KGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 820 ~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
-+.||+|+| .||+++|++-|.+.++
T Consensus 419 ------~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 419 ------DNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp ------SSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred ------CCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 369999999 5899999999988654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=1.1 Score=47.43 Aligned_cols=130 Identities=11% Similarity=-0.014 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCC--ccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 704 KTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIK--YERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 704 ~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~--~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
....+.+.+.++|...|.++.. ++++++... ...+.++.|.+-+.. ..+...+.+.+.++||.++
T Consensus 254 ~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~ 320 (388)
T 1b9h_A 254 EQIAVRDERWTLLSRLLGAIDG-----------VVPQGGDVRADRNSHYMAMFRIPGLT--EERRNALVDRLVEAGLPAF 320 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTT-----------CEECCCCTTCCBCCCSEEEEECTTCC--HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHhccCCC-----------ccccCCCcCCCccceEEEEEEeCCcC--cccHHHHHHHHHHCCCCcc
Confidence 3556666788899999987632 577775432 234678899885421 1123334444446899999
Q ss_pred ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccC-CHHHHHHHHHHHHHhcC
Q 002866 782 IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLT-NFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 782 ~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lS-nFEDVyrl~~Fva~Fld 854 (872)
.|+...... ..+.. -+.. .+ ........-+.. ...--++||.+++..+ |.|||+++++.|.++++
T Consensus 321 ~~~~~~~~~-~~~~~-~~~~-~~-~~~~~~~~~~~~----~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 321 AAFRAIYRT-DAFWE-LGAP-DE-SVDAIARRCPNT----DAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp ECCCCGGGS-HHHHH-SSCC-SS-CHHHHHHTCHHH----HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccCccccC-hHhHh-cCCC-cc-cccccccCCHHH----HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 986421000 00000 0000 00 000000000000 0001248999999999 99999999999998653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=89.09 E-value=1.1 Score=46.89 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
+..+..+.+.+.++|...|.++ . +.++.+ +|..+.|.+.+ ++...+.+.+.++||.++
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~-~-----------~~~~~~-----~~~~~~~~~~~-----~~~~~l~~~l~~~gi~v~ 320 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSI-G-----------YDVIPS-----QGNYLFATPPD-----RDGKRVYDGLYARKVLVR 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-T-----------CEECCC-----SSSEEEEECTT-----CCHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-C-----------CEEcCC-----CccEEEEECCC-----CCHHHHHHHHHHCCEEEE
Confidence 6778888899999999999876 2 355543 57778887654 466777777778899887
Q ss_pred ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 782 IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 782 ~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
.|.. . + . -+.||+|++ +.+|+++|++.+.++.+.
T Consensus 321 ~~~~--~----------~----------------~---------~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 321 HFSD--P----------L----------------L---------AHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp CCCS--T----------T----------------T---------TTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred ECCC--C----------C----------------C---------CCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 6432 0 0 0 137899987 999999999999997664
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=2.2 Score=44.95 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=70.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
++..+..+.+.+.++|...|.++. +++++|. .|..+.+.+-+. + +.+++.++||.+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~~----~~~~~~~~~~~~-----~---~~~~l~~~gi~v 330 (381)
T 1v2d_A 275 FYEALREGYRRRRDLLAGGLRAMG------------LRVYVPE----GTYFLMAELPGW-----D---AFRLVEEARVAL 330 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT------------CCEECCS----BSSEEEEECTTC-----C---HHHHHHHTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------------CEecCCC----cceEEEEecChH-----h---HHHHHHhCCEEE
Confidence 467788899999999999998842 3566653 356777777542 2 888899999999
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
+.|..+... . . +-+.||+|++. +.||+.++++-+.++++.
T Consensus 331 ~~g~~~~~~----~---------------------~--------~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 331 IPASAFYLE----D---------------------P--------PKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp EEGGGGCSS----S---------------------C--------CTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred ecchHhCCC----C---------------------C--------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 988655310 0 0 02389999997 899999999999998764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.51 E-value=1.8 Score=45.31 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=66.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
++..+..+.+.+.++|.+.|.++ . ++++.+ .|..+.+++-+. +...+.+.+.++||.+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~l~~~-g-----------~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v 332 (365)
T 3get_A 275 FTEKTLENNFSQMELYKEFAKKH-N-----------IKIIDS-----YTNFITYFFDEK-----NSTDLSEKLLKKGIII 332 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T-----------CEECCC-----SSSEEEEECSSS-----CHHHHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-----------CEECCC-----CCeEEEEECCCC-----CHHHHHHHHHHCCEEE
Confidence 35677888888899999999876 2 455554 467777777552 5666666666679999
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
+.|..+. -+.||+|++ +.+|+++|++.+.+++
T Consensus 333 ~~g~~~~--------------------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 333 RNLKSYG--------------------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EECGGGT--------------------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred EECccCC--------------------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8875441 128999987 8999999999998865
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=2.2 Score=48.24 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=73.0
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCC--C---C-----
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKE--R---G----- 762 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~--G---~----- 762 (872)
.|..+-.-|+..+-.|...+++++...|.++.. ++++.+. ..+.++|+|.+.... + .
T Consensus 378 al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg-----------~~l~~~~--~p~~~~v~f~~~p~~~~~~~~~~~~~~ 444 (511)
T 3vp6_A 378 MWKAKGTVGFENQINKCLELAEYLYAKIKNREE-----------FEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRRE 444 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT-----------EEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------EEEEecC--CCCeEEEEEEEeCccccccccchhHHH
Confidence 345555567888889999999999999988643 7888742 246788999876421 0 0
Q ss_pred ---ccChHHHHHHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEec-cccCC
Q 002866 763 ---LINPEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASL-GFLTN 838 (872)
Q Consensus 763 ---~v~p~~VqkLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASL-G~lSn 838 (872)
.+...+.++|.++-.+-+.+.... . +.+.+|+++ ...+|
T Consensus 445 ~l~~~~~~l~~~L~~~G~~~~~~~~~~-----------------------------~--------~~~~lRi~~~~~~~t 487 (511)
T 3vp6_A 445 KLHKVAPKIKALMMESGTTMVGYQPQG-----------------------------D--------KANFFRMVISNPAAT 487 (511)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEEEET-----------------------------T--------EEEEEEECCCCTTCC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEeC-----------------------------C--------ceEEEEEEecCCCCC
Confidence 012245555555433333211000 0 145899999 79999
Q ss_pred HHHHHHHHHHHHHh
Q 002866 839 FEDVYKLWAFVAKF 852 (872)
Q Consensus 839 FEDVyrl~~Fva~F 852 (872)
.+||+++|+.|.+.
T Consensus 488 ~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 488 QSDIDFLIEEIERL 501 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=88.45 E-value=1.6 Score=45.01 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEee
Q 002866 703 NKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI 782 (872)
Q Consensus 703 ~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~ 782 (872)
...-.+++...++|.+.|.++. +++|.| .|+.+.|.+.+ ...+.+++.++||.++.
T Consensus 248 ~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~-----~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~ 303 (337)
T 3p1t_A 248 EAHIAKTLAQRRRVADALRGLG------------YRVASS-----EANFVLVENAA-------GERTLRFLRERGIQVKD 303 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------------CCBCCC-----SSSEEEEECTT-------THHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCc------------CEECCC-----CCeEEEEEcCC-------HHHHHHHHHHCCeEEEE
Confidence 3444555566677887887752 233433 46677776543 35677778889999998
Q ss_pred cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 783 G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
|..+.. -+.||+|++ +.+|+++|++.+.+++.
T Consensus 304 g~~~~~-------------------------------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 304 AGQFGL-------------------------------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp GGGGTC-------------------------------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CccCCC-------------------------------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 865521 138999987 79999999999998764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=88.44 E-value=1.9 Score=46.79 Aligned_cols=102 Identities=7% Similarity=-0.023 Sum_probs=70.6
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccC-CCCcc-ChHHHHHHHHHc
Q 002866 699 MLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDK-ERGLI-NPEVVQKLAEKE 776 (872)
Q Consensus 699 ~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~-~G~~v-~p~~VqkLAdr~ 776 (872)
.-.+..+..|.+.+.++|++.|.++.. ++++.|. .|..+.+.+-.. -...+ ...++++|++++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~g-----------~~~~~p~----~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 383 (427)
T 3dyd_A 319 GEFYHNTLSFLKSNADLCYGALAAIPG-----------LRPVRPS----GAMYLMVGIEMEHFPEFENDVEFTERLVAEQ 383 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT-----------EEEECCS----BTTEEEEEECGGGCTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-----------ceecCCC----eeEEEEEecCHhhcCCCCCHHHHHHHHHHHC
Confidence 344667778888889999999988632 5666653 355565566421 01112 346778888899
Q ss_pred CCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 777 GISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 777 ~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
||.++.|..+.. -+.+|+|++ ++.|++.++++-+.+++.
T Consensus 384 gV~v~~g~~~~~-------------------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 384 SVHCLPATCFEY-------------------------------------PNFIRVVIT--VPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp CEECEEGGGGTC-------------------------------------TTEEEEESC--SCHHHHHHHHHHHHHHHH
T ss_pred CEEEECCcccCC-------------------------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 999998865520 128999987 789999999998888653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=88.34 E-value=1.9 Score=45.14 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred chhhHHHHHHHHHHHHHHHhc-ccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 702 LNKTTCRLRFLINWLVTSLLQ-LRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~-LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
+..+..+.+.+.++|...|.+ ++. ++++.|. .|..+.+++.+. | ++..+++++++++||.+
T Consensus 276 ~~~~~~~~~~~~~~l~~~L~~~~~~-----------~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~l~~~~gi~v 337 (377)
T 3fdb_A 276 LNQEVAYLKNNHDFLLHEIPKRIPG-----------AKITPMQ----ATYLMWIDFRDT-T--IEGSPSEFFIEKAKVAM 337 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-----------CEECCCS----BCSEEEEECTTS-C--CCSCHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-----------ceEecCC----eeEEEEEECccc-C--CCHHHHHHHHHhCCEEe
Confidence 566778888888889888887 432 5677653 233445666542 1 34678899999999999
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
+.|..+... +-+.||+|++ ++.||+.++++-+.+++.
T Consensus 338 ~~g~~~~~~-----------------------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 338 NDGAWFGED-----------------------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp EEGGGGCGG-----------------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred cCChhccCC-----------------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHh
Confidence 998666320 0238999998 489999999999988764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=1.6 Score=46.80 Aligned_cols=120 Identities=10% Similarity=0.038 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccc--eEEEEeccCC---------------CC--
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGA--AVAFNVRDKE---------------RG-- 762 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~--~VAFNv~d~~---------------G~-- 762 (872)
+..+..|.+.+.++|.+.|.++ . ++|++.. ..++. ++.|.+-+.. |.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~-~------------~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY-F------------SFLDELE-NSRSNRWLSTALINFDKNELNACQKDINISQKNITL 310 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-E------------ECCCCCT-TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccc-c------------cccCCCC-CCcceeEEEEEEecchhhcccccccccccccccccc
Confidence 3446688899999999988765 2 4555421 11222 5777774310 11
Q ss_pred ccChHHHHHHHHHcCCeEeecccc---cccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCH
Q 002866 763 LINPEVVQKLAEKEGISLGIGFLS---HIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNF 839 (872)
Q Consensus 763 ~v~p~~VqkLAdr~~IsLr~G~l~---~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnF 839 (872)
-++...+.+.+.++||.+|.|..| .+.+...... ++ ++. ...--..++..++..+|.
T Consensus 311 ~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~--~~----------~~~--------~~~~~~~~~~~~~~~~t~ 370 (394)
T 1o69_A 311 HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAY--LN----------GNS--------ELFFQKGICLPSGTAMSK 370 (394)
T ss_dssp CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEE--EC----------SHH--------HHHHHHEEEECCCTTCCH
T ss_pred ccCHHHHHHHHHHcCCcccccCCccccchhhhccCCC--CC----------hHH--------HHHhcCeEEccCCCCCCH
Confidence 145666666667789999999544 2221110000 00 000 000002444455999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 002866 840 EDVYKLWAFVAKFLNP 855 (872)
Q Consensus 840 EDVyrl~~Fva~Fld~ 855 (872)
|||++|++.|.+++..
T Consensus 371 edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 371 DDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=88.00 E-value=1 Score=46.89 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
+..+..|.+.+.++|...|.++. +.++. ..|..+.+++-+ +...+.+.+.++||.++
T Consensus 262 ~~~~~~~~~~~~~~l~~~l~~~~------------~~~~~-----~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~ 318 (354)
T 3ly1_A 262 ITYSKKSNDVSRQILLKALEDLK------------LPYLP-----SEGNFVFHQLVV------PLKDYQTHMADAGVLIG 318 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT------------CCBCC-----CCSSEEEEECSS------CHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC------------CeECC-----CCceEEEEECCC------CHHHHHHHHHHCCEEEe
Confidence 56677888888899998888762 23332 257778777754 45555555567899988
Q ss_pred ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 782 IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 782 ~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
|.++. . -+.||+|++ |.+|+.+|++.+.+++..
T Consensus 319 -g~~~~----------------------------~---------~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 319 -RAFPP----------------------------A---------DNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -CCCTT----------------------------C---------TTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred -ecCCC----------------------------C---------CCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 64331 0 138999976 899999999999987653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=87.67 E-value=1.7 Score=46.53 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=72.6
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccCh-HHHHH
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINP-EVVQK 771 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p-~~Vqk 771 (872)
.|++++.. ..+..+.+.+.++|...|.++.. .++ .+|+++.+.+.+. ... .+.++
T Consensus 299 al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~------------~~~------~~~~~~~~~~~~~----~~~~~~~~~ 354 (409)
T 3kki_A 299 TLEIIESA--DNRRQHLDRMARKLRIGLSQLGL------------TIR------SESQIIGLETGDE----RNTEKVRDY 354 (409)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHHTTTC------------CCC------CSSSEEEEEEESH----HHHHHHHHH
T ss_pred HHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCC------------ccC------CCCCEEEEEeCCH----HHHHHHHHH
Confidence 34544443 56778888999999999988743 222 2788888888641 122 34455
Q ss_pred HHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 772 LAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 772 LAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
|.+ +||.++.++.... .. +-+.||+++++..|.||++++++.+.+
T Consensus 355 L~~-~Gv~v~~~~~~~~------------------------~~----------~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 355 LES-NGVFGSVFCRPAT------------------------SK----------NKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp HHH-TTEECEEECTTSS------------------------CT----------TCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHH-CCceEeeeCCCCc------------------------CC----------CCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 554 4988776432100 00 135999999999999999999999998
Q ss_pred hcCccccccCCCCc
Q 002866 852 FLNPAFVREGALPT 865 (872)
Q Consensus 852 Fld~~f~~~~~~~~ 865 (872)
.++ ...|++
T Consensus 400 ~l~-----~~~~~~ 408 (409)
T 3kki_A 400 AVN-----YGDFYF 408 (409)
T ss_dssp HHH-----HSSCCC
T ss_pred HHh-----cCCCCc
Confidence 654 345654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=2.4 Score=45.01 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=70.9
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQK 771 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~Vqk 771 (872)
..|++++. ..+..|++.+.++|...|.++..| ++..+ ...|..+.|.+-+. ...++++
T Consensus 296 ~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~-----~~~g~~~~~~~~~~-----~~~l~~~ 353 (395)
T 1vef_A 296 AAIRYLER---TRLWERAAELGPWFMEKLRAIPSP---------KIREV-----RGMGLMVGLELKEK-----AAPYIAR 353 (395)
T ss_dssp HHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCT---------TEEEE-----EEETTEEEEEESSC-----SHHHHHH
T ss_pred HHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcC---------ceEEE-----EEEEEEEEEEEcCh-----HHHHHHH
Confidence 45665554 457789999999999999887642 22211 13578899987541 4456666
Q ss_pred HHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 772 LAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 772 LAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
|.+++||.++.|. -+.||+|+++..+.||+.++++-+.+
T Consensus 354 l~~~~gi~v~~~~-----------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 354 LEKEHRVLALQAG-----------------------------------------PTVIRFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp HHHHHCEECEESS-----------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCC-----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6647788877530 12899999999999999999999988
Q ss_pred hc
Q 002866 852 FL 853 (872)
Q Consensus 852 Fl 853 (872)
++
T Consensus 393 ~l 394 (395)
T 1vef_A 393 VL 394 (395)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=87.34 E-value=1 Score=46.45 Aligned_cols=92 Identities=5% Similarity=0.037 Sum_probs=62.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
++..+..|.+.+.++|.+.| ++.. +++++|. .+..+.+++ +..++++|.++.||.+
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L-~~~~-----------~~~~~~~----~~~~~~~~~--------~~~~~~~l~~~~gi~v 320 (359)
T 1svv_A 265 LFFELGAHSNKMAAILKAGL-EACG-----------IRLAWPS----ASNQLFPIL--------ENTMIAELNNDFDMYT 320 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHTT-----------CCBSSCC----SSSEECBEE--------EHHHHHHHTTTEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHh-ccCC-----------eEEccCC----ccceEEEEc--------CHHHHHHHHHhcCEEE
Confidence 45667888889999999888 5422 4556653 355555544 2467777777668888
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
.| .. . . +-+.||+|+++.++.||++++++.+.+++.
T Consensus 321 -~~--~~------~---------------------~--------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 321 -VE--PL------K---------------------D--------GTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp -EE--EE------T---------------------T--------TEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred -Ee--cc------c---------------------C--------CCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 11 00 0 0 135899999999999999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.10 E-value=1.9 Score=45.43 Aligned_cols=106 Identities=9% Similarity=0.076 Sum_probs=72.9
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccCh-HHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINP-EVVQ 770 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p-~~Vq 770 (872)
..|++.+ -++..+..|.+.+.++|.+.|.++.. +++ ..+|+.+.|.+.+. .+. .+++
T Consensus 288 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~------------~~~-----~~~~~~~~~~~~~~----~~~~~~~~ 345 (399)
T 3tqx_A 288 KVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGF------------QLV-----PGNHPIIPVMLGDA----QLATNMAD 345 (399)
T ss_dssp HHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTC------------CBC-----CCSSSEEEEEEECH----HHHHHHHH
T ss_pred HHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCC------------CcC-----CCCCCEEEEEeCCH----HHHHHHHH
Confidence 3455443 46788999999999999999998843 222 24678888877541 223 3444
Q ss_pred HHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHH
Q 002866 771 KLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVA 850 (872)
Q Consensus 771 kLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva 850 (872)
+|. ++||.++.+..... . . +-..||+|+++.++.||+.++++.+.
T Consensus 346 ~l~-~~gi~v~~~~~~~~-----~-------------------~----------~~~~iRi~~~~~~~~~~i~~~~~~l~ 390 (399)
T 3tqx_A 346 HLL-QEGIYVVGFSYPVV-----P-------------------M----------GKARIRVQMSAVHTQQQLDRAIEAFG 390 (399)
T ss_dssp HHH-HTTEECCEECTTTS-----C-------------------T----------TCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHH-HCCCEEeeeCCCCC-----C-------------------C----------CCceEEEEeecCCCHHHHHHHHHHHH
Confidence 554 47998886532110 0 0 13589999999999999999999999
Q ss_pred HhcC
Q 002866 851 KFLN 854 (872)
Q Consensus 851 ~Fld 854 (872)
+++.
T Consensus 391 ~~~~ 394 (399)
T 3tqx_A 391 QVGK 394 (399)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=3.1 Score=43.91 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
+..+..+.+.+.++|...|.++.. +..+.| ..|..+.+.+- +...+.+.+.++||.++
T Consensus 265 ~~~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~~----~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~ 322 (356)
T 1fg7_A 265 MRERVAQIIAEREYLIAALKEIPC-----------VEQVFD----SETNYILARFK-------ASSAVFKSLWDQGIILR 322 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT-----------EEEECC----CSSSEEEEEET-------THHHHHHHHHHTTEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-----------ceEECC----CCCeEEEEECC-------CHHHHHHHHHHCCEEEE
Confidence 567778888888999999987531 223334 25778877774 34444444478899998
Q ss_pred e-cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 782 I-GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 782 ~-G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
. |..+.. -+.+|+|++ +.+|+++|++.+.++
T Consensus 323 ~~g~~~~~-------------------------------------~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 323 DQNKQPSL-------------------------------------SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ECTTSTTC-------------------------------------TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred ECCCCCCC-------------------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 7 643310 127999987 689999999988764
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=1.7 Score=52.66 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=55.0
Q ss_pred CceEEEEeCc-cCcccchhc----HHH-HHHHHHCCcEEEeecccc-C---CCCCccCCCCCCCCcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQ-SRVTGAKYS----YQW-MALAQQNHWHVLLDAGSL-G---PKDMDSLGLSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~v-SNvTG~i~P----Le~-I~~Are~G~~VLVDAAQ~-a---G~~mipLDLs~l~~DFlv~S~HK~fG~~P 370 (872)
++..|.+--+ .+..|.+.| ++. .+.|+++|+++++|=+|. . |+ +.-...-...||+++++ |.+|+
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~gv~PDiitls--K~L~g-- 668 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLGCKPDIACFA--KLLTG-- 668 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SSTHHHHSSCCSEEEEC--GGGGT--
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-chhhHhcCCCCcEEEEe--ccccc--
Confidence 4677777775 788898886 553 457799999999997765 2 32 11111112468988654 87753
Q ss_pred Cc---eEEEEEeCCCcccccC
Q 002866 371 TG---FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 371 tG---vG~LyVRk~~i~~L~P 388 (872)
| +|++++++++++.+.+
T Consensus 669 -G~~Plgav~~~~~i~~~~~~ 688 (831)
T 4a0g_A 669 -GMVPLAVTLATDAVFDSFSG 688 (831)
T ss_dssp -TSSCCEEEEECHHHHHTTCS
T ss_pred -CccCcEEEEECHHHHHHHhc
Confidence 4 4999999987766643
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=86.75 E-value=2.3 Score=45.39 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=69.7
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCC-CCccC-hHHHHHHHHHc
Q 002866 699 MLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKE-RGLIN-PEVVQKLAEKE 776 (872)
Q Consensus 699 ~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~-G~~v~-p~~VqkLAdr~ 776 (872)
.-++..+..|++.+.++|...|.++.. ++++.| ..|..+.+.+-..+ +...+ ..++++|+.++
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g-----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (416)
T 1bw0_A 308 QEHLDQIVAKIEESAMYLYNHIGECIG-----------LAPTMP----RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEE 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTT-----------EEECCC----CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CcccCC----CeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHC
Confidence 345677888899999999999987532 567765 34666777763210 01123 34567777889
Q ss_pred CCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 777 GISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 777 ~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
||.++.|..+.. -+.+|+|++ ++.||+.+.++-+.+++.
T Consensus 373 gi~v~~g~~f~~-------------------------------------~~~iRis~~--~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 373 NVQVLPGTIFHA-------------------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp CEECEEGGGGTC-------------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred CEEEecccccCC-------------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 999998854410 127999997 689999998888877653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=86.53 E-value=2.7 Score=45.11 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCC--C-ccccceEEEEeccCCCCccChHHHHHHHHHcCC
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKI--K-YERGAAVAFNVRDKERGLINPEVVQKLAEKEGI 778 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~--~-~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~I 778 (872)
+..+..|.+.+.++|...|.++ . ++++.|.. . ...|..+.+++-+ ++...+.+.+.++||
T Consensus 333 ~~~~~~~~~~~~~~l~~~L~~~-g-----------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gi 395 (437)
T 3g0t_A 333 FRDSVIEYGRKARIMKKMFLDN-G-----------FNIVYDKDGNEPLADGFYFTVGYKG-----MDSSKLIEKFVRYGM 395 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T-----------EEESSCEETTEECCSSSEEEEEETT-----CCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C-----------CEEeccccCCCCCceeEEEEEecCC-----CCHHHHHHHHHHcCe
Confidence 7788889999999999999887 2 56662110 0 1457778888763 455666555556799
Q ss_pred eEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 779 SLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 779 sLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
.++.|..+... . -+.||+|++.. |.||+.++++.+.+++
T Consensus 396 ~v~~~~~~~~~--------------------------~---------~~~iRis~~~~-~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 396 CAITLKTTGSK--------------------------R---------NEAMRICTSLL-PESQFPDLEKRLQMLN 434 (437)
T ss_dssp ECEESTTTTCC--------------------------C---------TTCEEEECSSS-CGGGHHHHHHHHHHHH
T ss_pred EEeeccccCCC--------------------------C---------CCEEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 99977555210 0 13799999966 9999999999998864
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=85.75 E-value=7.1 Score=41.50 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=52.0
Q ss_pred cccceEEEEeccCCCCccChHHHHHHHHHcCCeEee---ccc----ccccccCCcccCCCCCcCCCCCCCCCCCCCCcCC
Q 002866 747 ERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI---GFL----SHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDG 819 (872)
Q Consensus 747 ~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~---G~l----~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~ 819 (872)
.+|++++|++.+ . ...+.+++++.||.++. |.. +++....+ |. . . .......|..
T Consensus 295 ~~~~~~~~~~~~-----~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~------~~--~-~-~~~~~~~g~~-- 356 (386)
T 1cs1_A 295 GFGAMLSFELDG-----D-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH------AG--M-A-PEARAAAGIS-- 356 (386)
T ss_dssp SCCSEEEEEESS-----C-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT------TT--S-C-HHHHHHHTCC--
T ss_pred CCceEEEEEECC-----C-HHHHHHHHHhCCcceEcccCCCcceeeeccccccc------cc--C-C-HHHHHhcCCC--
Confidence 469999999864 1 67788888999999983 411 22211000 00 0 0 0000000111
Q ss_pred CCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 820 KGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 820 ~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
-++||+|+|+.++.++|.+|.+++.+..
T Consensus 357 ------~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 357 ------ETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp ------TTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred ------CCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2599999999999999999999998754
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=85.10 E-value=3.5 Score=43.22 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHHHHHHHHhc-ccCCCCCCCCCceEEEEeCCCCCccccceEE-EEeccCCCCccChHH-HHHHHHHcCC
Q 002866 702 LNKTTCRLRFLINWLVTSLLQ-LRFSDSDGESRAHLVHIYGPKIKYERGAAVA-FNVRDKERGLINPEV-VQKLAEKEGI 778 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~-LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VA-FNv~d~~G~~v~p~~-VqkLAdr~~I 778 (872)
+..+..+.+.+.++|...|.+ +.. ++++.|. |+.+. +++-+. | ++... +++|.++.||
T Consensus 292 ~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi 352 (391)
T 4dq6_A 292 LESFLEYLESNIDFAIKYINENMPK-----------LKVRKPE-----GTYLLWVDFSAL-G--LSDEELESILVQKGKV 352 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTT-----------SEECCCS-----BSSEEEEECGGG-C--CCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-----------CEecCCC-----ccEEEEEEhhhc-C--CCHHHHHHHHHHhCCE
Confidence 567788888889999988887 442 5666653 34444 666531 1 34444 4555555599
Q ss_pred eEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 779 SLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 779 sLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
.++.|..+... + -+.||+|++ ++.||+.++++-+.+.+
T Consensus 353 ~v~~g~~~~~~-------------------------~----------~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 353 ALNQGNSFGIG-------------------------G----------SGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECEEGGGGCTT-------------------------C----------TTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EeeCchhhCCC-------------------------C----------CCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 99998655210 0 138999999 68999999999988765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.05 E-value=5.4 Score=41.43 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChH-HHHHHHHHcCCeEeeccccccc
Q 002866 711 FLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPE-VVQKLAEKEGISLGIGFLSHIR 789 (872)
Q Consensus 711 ~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~-~VqkLAdr~~IsLr~G~l~~i~ 789 (872)
.+.++|...|.++.. +++|.+ .|..+.+.+-+. +.. ++++|++++||.++.|..+..
T Consensus 255 ~~~~~l~~~L~~~~~-----------~~~~~~-----~~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~f~~- 312 (350)
T 3fkd_A 255 RNTVDFITALNRLDG-----------VEVHPS-----GTTFFLLRLKKG-----TAAELKKYMLEEYNMLIRDASNFRG- 312 (350)
T ss_dssp HHHHHHHHHHHHSTT-----------EEECCC-----SSSEEEEEESSS-----CHHHHHHHHHHTTCEECEECTTSTT-
T ss_pred HHHHHHHHHHhcCCC-----------cEECCC-----CCcEEEEECCCC-----CHHHHHHHHHHHCCEEEEeCccCCC-
Confidence 667777878877632 566643 477777777542 444 455555559999998865520
Q ss_pred ccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 790 ILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 790 ~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
. +-+.||+|+| +.+|+++|++.+.+++..
T Consensus 313 -----------~-----------------------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 313 -----------L-----------------------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----------C-----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred -----------C-----------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 0 0238999987 889999999999986643
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=85.02 E-value=3.4 Score=43.29 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
.+..+..+.+.+.++|...|.+++. ++++.+ .|..+.|.+-+ + ...++++|. ++||.+
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~~-----~g~~~~~~~~~-~----~~~l~~~l~-~~gi~v 322 (364)
T 1lc5_A 265 WQQATWHWLREEGARFYQALCQLPL-----------LTVYPG-----RANYLLLRCER-E----DIDLQRRLL-TQRILI 322 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTT-----------EEECCC-----SSSEEEEEESC-T----TCCHHHHHH-TTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----------CEECCC-----CCeEEEEECCC-c----HHHHHHHHH-HCCcEE
Confidence 3566777888888899988887532 566643 57888887753 1 235666666 459999
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
+.|..+.. . +-+.+|+|++ +.+|+++|++.+.+.+.
T Consensus 323 ~~g~~~~~---------------------------~--------~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 323 RSCANYPG---------------------------L--------DSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp EECTTSTT---------------------------C--------CTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred eeCcccCC---------------------------C--------CCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 88754420 0 0138999965 79999999999998764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=84.93 E-value=1.4 Score=47.28 Aligned_cols=119 Identities=11% Similarity=0.063 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccce-EEEEeccCCCCccChHHHHHHHHHcCCeEee
Q 002866 704 KTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAA-VAFNVRDKERGLINPEVVQKLAEKEGISLGI 782 (872)
Q Consensus 704 ~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~-VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~ 782 (872)
.+..|.+.+.++|...|.+++. ++++++. ....++ +.|.+.. .+...|.+.+.++||.++.
T Consensus 275 ~~~~~~~~~~~~l~~~L~~~~g-----------~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~ 336 (399)
T 2oga_A 275 SWNGRRSALAAEYLSGLAGLPG-----------IGLPVTA--PDTDPVWHLFTVRT-----ERRDELRSHLDARGIDTLT 336 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTT-----------CBCCCCC--TTEECCCSSEEEEC-----SSHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHhccCCC-----------ccccCCC--CCCcceeEEEEEEC-----CCHHHHHHHHHHCCCceec
Confidence 4677888899999999887642 2333321 112222 3566653 2455666666678999998
Q ss_pred cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 783 G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
++...+.....+.. -+. . ... .+.. ....-.+||+|+++.+|.||++++++.|.++++
T Consensus 337 ~~~~~~~~~~~~~~-~~~---~-~~~-~p~~--------~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 337 HYPVPVHLSPAYAG-EAP---P-EGS-LPRA--------ESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp SCSSCGGGSHHHHT-TSC---C-TTS-CHHH--------HHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhcc-cCC---C-CCC-ChhH--------HHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 65211000000000 000 0 000 0000 000125899999999999999999999998653
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=84.80 E-value=1 Score=49.09 Aligned_cols=94 Identities=11% Similarity=-0.021 Sum_probs=55.1
Q ss_pred EEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEee---cc----cccccccCCcccCCCCCcCCCCCCC
Q 002866 737 VHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI---GF----LSHIRILDSPRQQGGSSSLDDTTLC 809 (872)
Q Consensus 737 V~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~---G~----l~~i~~~d~~~~~~g~~~~~~~~~~ 809 (872)
+.+++|.. ...|++++|.+.+ ....+.+++++.+|-.+. |. .+++.-..+... . ...
T Consensus 301 ~~~~~~~~-~~~g~~~~~~l~~------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~-------~--~~~ 364 (403)
T 3cog_A 301 HELVKRQC-TGCTGMVTFYIKG------TLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASV-------L--KND 364 (403)
T ss_dssp HHHHHHHC-SCCCSEEEEEESS------CHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTS-------C--HHH
T ss_pred HHHHHhcC-CCCceEEEEEecC------CHHHHHHHHHhCCcceEccCCCCcceeeecccccccccC-------C--HHH
Confidence 34454432 2469999998754 136788999999986543 42 122210000000 0 000
Q ss_pred CCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCc
Q 002866 810 RPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 810 ~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~ 855 (872)
. ...|. .-+.||+|+|+.++.++|.+|.+.+.+.+++
T Consensus 365 ~-~~~g~--------~~~~iRlSvg~e~~~d~i~~l~~al~~~~~~ 401 (403)
T 3cog_A 365 R-DVLGI--------SDTLIRLSVGLEDEEDLLEDLDQALKAAHPP 401 (403)
T ss_dssp H-HHHTC--------CTTEEEEECCSSCHHHHHHHHHHHHHHHCCC
T ss_pred H-HhcCC--------CcCeEEEEeCCCCHHHHHHHHHHHHHHhhcC
Confidence 0 00011 1359999999999999999999999876553
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=84.69 E-value=2.5 Score=44.87 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=71.4
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccCh-HHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINP-EVVQ 770 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p-~~Vq 770 (872)
..|++.+. +..+..+.+.+.++|...|.++. ++++.| +|..+.+.+-+ | ++. .+++
T Consensus 285 ~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~-----~g~~~~~~~~~--~--~~~~~l~~ 341 (398)
T 3a2b_A 285 KALEIIQN--EPEHIEKLWKNTDYAKAQLLDHG------------FDLGAT-----ESPILPIFIRS--N--EKTFWVTK 341 (398)
T ss_dssp HHHHHHHH--CTHHHHHHHHHHHHHHHHHHHTT------------CCBCSC-----CSSEEEEECCC--H--HHHHHHHH
T ss_pred HHHHHHhh--CHHHHHHHHHHHHHHHHHHHhcC------------CCcCCC-----CCCEEEEEcCC--H--HHHHHHHH
Confidence 45555432 56778888899999999998863 233443 37888887732 1 233 3455
Q ss_pred HHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHH
Q 002866 771 KLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVA 850 (872)
Q Consensus 771 kLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva 850 (872)
+|.++ ||.++.|..+... . +-+.||+|++...+.||+.++++-+.
T Consensus 342 ~l~~~-gi~v~~~~~~~~~--------------------------~--------~~~~iRis~~~~~~~e~i~~~~~~l~ 386 (398)
T 3a2b_A 342 MLQDD-GVFVNPVVSPAVP--------------------------A--------EESLIRFSLMATHTYDQIDEAIEKMV 386 (398)
T ss_dssp HHHHT-TEECEEECTTTSC--------------------------G--------GGCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHC-CcEEEeeCCCCCC--------------------------C--------CCceEEEEEeCCCCHHHHHHHHHHHH
Confidence 55555 9999987544210 0 02489999999999999999999998
Q ss_pred Hhc
Q 002866 851 KFL 853 (872)
Q Consensus 851 ~Fl 853 (872)
+++
T Consensus 387 ~~l 389 (398)
T 3a2b_A 387 KVF 389 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=84.62 E-value=4.3 Score=42.54 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=67.9
Q ss_pred chhhHHHHHHHHHHHHHHHhc-ccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChH-HHHHHHHHcCCe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQ-LRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPE-VVQKLAEKEGIS 779 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~-LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~-~VqkLAdr~~Is 779 (872)
+..+..+.+.+.++|...|.+ ++. ++++.|. -|..+.+++-+. | ++.. ++++|++++||.
T Consensus 288 ~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~ 349 (391)
T 3dzz_A 288 LRELKQVLRDNFAYAREFLAKEVPE-----------VKVLDSN----ASYLAWVDISAL-G--MNAEDFCKYLREKTGLI 349 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTT-----------SEECCCC----BSSEEEEECGGG-C--SCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-----------cEEeccC----ceEEEEEehhhc-C--CCHHHHHHHHHHhCCEE
Confidence 677788888899999999988 543 5667653 233344555431 1 3444 455565799999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
++.|..+... +-+.||+|++ ++.||+.++++-+.+++.
T Consensus 350 v~~g~~~~~~-----------------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 350 ISAGNGYRGN-----------------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp CEESGGGCTT-----------------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred EeCchhhCCC-----------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 9998655310 0248999999 799999999999988653
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.30 E-value=1.9 Score=51.70 Aligned_cols=118 Identities=7% Similarity=-0.063 Sum_probs=83.7
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCcc-------------------------
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYE------------------------- 747 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~------------------------- 747 (872)
+++++..-|...+-.|+..++.++...|.++..--. ....-++++|||.....
T Consensus 434 A~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (755)
T 2vyc_A 434 AVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFT--ADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWV 511 (755)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTB
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccccc--ccccceeeccCchhccccccccccccccccchhccchhhhhc
Confidence 455666665566788999999999999998853000 00124689999864211
Q ss_pred --------------cc------ceEEEEecc--CCCC----ccChHHHHHHHHHcCCeEeecccccccccCCcccCCCCC
Q 002866 748 --------------RG------AAVAFNVRD--KERG----LINPEVVQKLAEKEGISLGIGFLSHIRILDSPRQQGGSS 801 (872)
Q Consensus 748 --------------RG------~~VAFNv~d--~~G~----~v~p~~VqkLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~ 801 (872)
.| ..|+||+-+ .+|+ =|++..|.+..+++||-++..
T Consensus 512 ~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~------------------ 573 (755)
T 2vyc_A 512 MHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT------------------ 573 (755)
T ss_dssp CCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE------------------
T ss_pred cCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec------------------
Confidence 23 478999963 5663 378889988888777654320
Q ss_pred cCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhc
Q 002866 802 SLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFL 853 (872)
Q Consensus 802 ~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fl 853 (872)
+...||+++++.+|.+|+.+|++.+.+|.
T Consensus 574 -----------------------~~~~v~~~~~~g~t~~~~~~l~~al~~~~ 602 (755)
T 2vyc_A 574 -----------------------TDFQIMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_dssp -----------------------CSSEEEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred -----------------------CCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 13489999999999999999999999874
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=84.20 E-value=3.3 Score=43.94 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=68.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChH-HHHHHHHHcCCe
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPE-VVQKLAEKEGIS 779 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~-~VqkLAdr~~Is 779 (872)
++..+..+.+.+.++|...|.++- | | +++++| ..|..+.|++-+ | ++.. ++++|.++.||.
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~~~-~------~---~~~~~~----~~~~~~~~~~~~--~--~~~~~l~~~l~~~~gi~ 361 (407)
T 2zc0_A 300 HLEGALLGYKEKRDIMLKALENHL-P------N---AEFTKP----IAGMFVMFFLPE--G--ADGISFANELMEREGVV 361 (407)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHC-T------T---SCBCCC----SBSSEEEEECST--T--CCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C------C---CEEecC----CCcEEEEEEcCC--C--CCHHHHHHHHHHhCCeE
Confidence 466778888888888888887631 1 1 344444 246677787743 1 3444 555666666999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
++.|..+... . . +-+.||+|++.. |.||++++++-+.+.++
T Consensus 362 v~~g~~~~~~----~---------------------~--------~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 362 VVPGKPFYTD----E---------------------S--------GKNAIRLNFSRP-SKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp CBCSGGGCSS----S---------------------C--------CTTEEEEECSSS-CTTHHHHHHHHHHHHHH
T ss_pred EECchhccCC----C---------------------C--------CCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 9988655310 0 0 023899999988 89999999999988653
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.76 E-value=2.8 Score=44.83 Aligned_cols=119 Identities=10% Similarity=-0.068 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccCh-HHHHHHHHHcCCe
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINP-EVVQKLAEKEGIS 779 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p-~~VqkLAdr~~Is 779 (872)
++..+..+.+.+.++|...|.++. +++++| ..|..+.|++-+..+ ++. .++++|++++||.
T Consensus 284 ~~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~----~~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~ 345 (411)
T 2o0r_A 284 WVAALRNSLRARRDRLAAGLTEIG------------FAVHDS----YGTYFLCADPRPLGY--DDSTEFCAALPEKVGVA 345 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------------CEECCC----CBSSEEEEECGGGTC--CCHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC------------CEecCC----CeeEEEEEecCCCCC--CCHHHHHHHHHHhCCEE
Confidence 356678888889999999998762 456665 235578888865311 233 4566678889999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcCccccc
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLNPAFVR 859 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld~~f~~ 859 (872)
++.|..+... .. ..... +. ..+-+.||+|++. +.||+.++++-+.++++. .-.
T Consensus 346 v~~g~~f~~~---~~--~~~~~-~~------------------~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~-~~~ 398 (411)
T 2o0r_A 346 AIPMSAFCDP---AA--GQASQ-QA------------------DVWNHLVRFTFCK--RDDTLDEAIRRLSVLAER-PAT 398 (411)
T ss_dssp CEEGGGGSCC---C-----------------------------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC-----
T ss_pred EcChhhhCCC---cc--ccccc-cc------------------cCCCCeEEEEecC--CHHHHHHHHHHHHHHHhc-cCc
Confidence 9988554210 00 00000 00 0013479999974 899999999999997754 333
Q ss_pred cCCCC
Q 002866 860 EGALP 864 (872)
Q Consensus 860 ~~~~~ 864 (872)
+-+|+
T Consensus 399 ~~~~~ 403 (411)
T 2o0r_A 399 GVPRG 403 (411)
T ss_dssp -----
T ss_pred CCCcc
Confidence 33554
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=82.43 E-value=4.2 Score=42.94 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChH-HHHHHHHHcCCe
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPE-VVQKLAEKEGIS 779 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~-~VqkLAdr~~Is 779 (872)
++..+..+.+.+.++|...|.++. ++++.|. .|..+.+.+-+. + .++.. ++++|++++||.
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~~----~g~~~~~~~~~~-~-~~~~~~~~~~l~~~~gi~ 348 (386)
T 1u08_A 287 HYLALPDFYRQKRDILVNALNESR------------LEILPCE----GTYFLLVDYSAV-S-TLDDVEFCQWLTQEHGVA 348 (386)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTSSS------------CEECCCC----BSSEEEEECTTT-C-CSCHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------------CeecCCC----ceEEEEEecCCC-C-CCCHHHHHHHHHHhCCEE
Confidence 366788888999999998888752 4566652 366788887542 1 13444 456677889999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
++.|..+... . . +-+.||+|++ ++.||+.++++-+.+|
T Consensus 349 v~~g~~f~~~----~-------------------~----------~~~~iRis~~--~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 349 AIPLSVFCAD----P-------------------F----------PHKLIRLCFA--KKESTLLAAAERLRQL 386 (386)
T ss_dssp CEEGGGGCSS----C-------------------C----------CSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred EeCchHhCCC----C-------------------C----------CCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence 9987433110 0 0 0248999998 4899999998887654
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=82.13 E-value=5 Score=43.24 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=68.0
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEE-EEeccCCCCccChHHHHHHHHHcCCeE
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVA-FNVRDKERGLINPEVVQKLAEKEGISL 780 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VA-FNv~d~~G~~v~p~~VqkLAdr~~IsL 780 (872)
+..+..+.+.+.++|...|.++ |. ++++.|. |..+. +++.+. | .-...++++|+++.||.+
T Consensus 322 ~~~~~~~~~~~~~~l~~~L~~~--~~---------i~~~~~~-----~~~~~~v~~~~~-~-~~~~~l~~~l~~~~gi~v 383 (421)
T 3l8a_A 322 LEELKTVIEGNIKLVIKELEAK--TK---------IKVMEPE-----GTYLVWLDFSAY-A-IAQPQLSEKLQNEAKVVL 383 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CS---------CEEECCS-----BSSEEEEECGGG-T-CCTTHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CC---------ceEeCCC-----eeEEEEEecccc-C-CCHHHHHHHHHHhCCEEE
Confidence 5677788888899999999877 31 5666653 44555 666431 1 113356677778889999
Q ss_pred eecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 781 GIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 781 r~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
+.|..+... +-++||+|++ ++.||+.++++-+.+.++
T Consensus 384 ~~g~~f~~~-----------------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 384 NDGAHFGKE-----------------------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEGGGGCGG-----------------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ECchhhCCC-----------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 998655210 0238999999 689999999999888653
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=82.00 E-value=1.3 Score=46.06 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=69.5
Q ss_pred chhhhhhhhcchhhHHHH--HHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHH
Q 002866 692 RHLDHINMLGLNKTTCRL--RFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVV 769 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~--r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~V 769 (872)
.++++++. .+..|. +.+.++|.+.|.++ . +++++|.. .+|+++.|++- +...+
T Consensus 259 ~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~-----------~~~~~~~~--~~~~~~~~~~~-------~~~~~ 313 (371)
T 2e7j_A 259 ASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-G-----------IKQLGDNP--HNHDLMFFHAE-------VLYEI 313 (371)
T ss_dssp HHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-T-----------CEEESSSS--CCSSEEEEECH-------HHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-C-----------cEEecCCC--ccCceEEEECC-------CHHHH
Confidence 35555554 677888 88999999999887 2 57777642 26889999874 23444
Q ss_pred HHHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEE-Eecccc-CCHHHHHHHHH
Q 002866 770 QKLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVT-ASLGFL-TNFEDVYKLWA 847 (872)
Q Consensus 770 qkLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVr-ASLG~l-SnFEDVyrl~~ 847 (872)
.+.+.++||.++. ....+. . .|.. -+.|| +|++.. ++.||+.++++
T Consensus 314 ~~~l~~~gi~~~~---~~~~~~--~-------------------~g~~--------~~~iRii~~~~~~~~~~~i~~~~~ 361 (371)
T 2e7j_A 314 SKKAKGGRFFLYR---ELKSRK--I-------------------HGIK--------PGLTRYFKLSTYGLSDEEVDYVLN 361 (371)
T ss_dssp HHHSSSGGGHHHH---HHHHTT--E-------------------ECSC--------TTCCSEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHCCEEEEe---cccccc--c-------------------cCCC--------CCceEEEEeeccCCCHHHHHHHHH
Confidence 4444467777654 110000 0 0000 13789 999998 99999999999
Q ss_pred HHHHhc
Q 002866 848 FVAKFL 853 (872)
Q Consensus 848 Fva~Fl 853 (872)
.+.+++
T Consensus 362 ~l~~~~ 367 (371)
T 2e7j_A 362 AFKEII 367 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=3.5 Score=44.36 Aligned_cols=97 Identities=6% Similarity=-0.119 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCC---------ccccceEEEEeccCCCCccChHHHHHH
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIK---------YERGAAVAFNVRDKERGLINPEVVQKL 772 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~---------~~RG~~VAFNv~d~~G~~v~p~~VqkL 772 (872)
+..+..+.+...++|+..|.++.. +++++|... ...|..+-+++-+ ...+.++
T Consensus 280 ~~~~~~~~~~~~~~l~~~L~~~~~-----------~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-------~~~~~~~ 341 (391)
T 3bwn_A 280 FKYGREMMKNRWEKLREVVKESDA-----------FTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-------ETDLVSE 341 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSS-----------EECCCCCCEEETTTTEEECCCCSEEEEEESS-------SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-----------cccccCCccccccccccCCCcceEEEecCCc-------HHHHHHH
Confidence 455677788888888989987631 566655422 1334456667643 2467888
Q ss_pred HHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 773 AEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 773 Adr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
+.++||.++.|..+.. + -+.||+|++ ++.|++.++++-+.++
T Consensus 342 l~~~gV~v~pg~~fg~--------------------------~----------~~~iRis~~--~~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 342 LRRHKVMSRAGERCGS--------------------------D----------KKHVRVSML--SREDVFNVFLERLANM 383 (391)
T ss_dssp HHHTTEECEEGGGGTC--------------------------C----------TTEEEEESC--SCHHHHHHHHHHHHSC
T ss_pred HHHCCEEEccCCCCCC--------------------------C----------CCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 8899999999865520 0 137999999 4899999999999887
Q ss_pred cC
Q 002866 853 LN 854 (872)
Q Consensus 853 ld 854 (872)
+.
T Consensus 384 ~~ 385 (391)
T 3bwn_A 384 KL 385 (391)
T ss_dssp C-
T ss_pred HH
Confidence 64
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=81.81 E-value=7.6 Score=41.85 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=72.4
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeC-CCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCe
Q 002866 701 GLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYG-PKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGIS 779 (872)
Q Consensus 701 Gl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYG-p~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~Is 779 (872)
++..+..|.+.+.++|...|.++.. +++++ |.....-..++.|++-+.. .-++...+.+.+.++||.
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g-----------~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~L~~~gI~ 325 (424)
T 2po3_A 258 AFPEVIDRNRRNHAAYREHLADLPG-----------VLVADHDRHGLNNHQYVIVEIDEAT-TGIHRDLVMEVLKAEGVH 325 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCTT-----------EEECCGGGGSCCCCCCEEEEECHHH-HSSCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC-----------ccccCCCCCCccccEEEEEEECCcc-chhhHHHHHHHHHHCCCc
Confidence 4667888999999999999887643 67776 3211111357777774200 014566777777889999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccc--eeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIR--VEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~--~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
++..+.........+.. .. . .+.+ ...+ -.+||.++....|.||+.++++.|.+++.
T Consensus 326 v~~~~~~~~~~~~~~~~------~g-~-------~~~~----~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 326 TRAYFSPGCHELEPYRG------QP-H-------APLP----HTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp CBCTTCSCGGGSTTTTT------SC-C-------CCCH----HHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred eecccCCccccchhhhh------cC-C-------CCCh----hHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 98733211100000000 00 0 0000 0000 12477777799999999999999998653
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=0.61 Score=51.52 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=51.5
Q ss_pred cccceEEEEeccCCCCccChHHHHHHHHHcC---CeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCc
Q 002866 747 ERGAAVAFNVRDKERGLINPEVVQKLAEKEG---ISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGF 823 (872)
Q Consensus 747 ~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~---IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 823 (872)
..|++|+|++.+ .+++..++++.+..+ |.++.|..|.....-.+... .++ +. ....|..
T Consensus 326 ~~g~i~sf~l~g----~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~-s~~-~~------~~~~g~~------ 387 (415)
T 2fq6_A 326 GSSGLFSFVLKK----KLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHI-AAI-RP------QGEIDFS------ 387 (415)
T ss_dssp CCCSEEEEEESS----CCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHH-HTT-CT------TCCCCCC------
T ss_pred CCceEEEEEECC----CCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCcc-ccc-cc------hhhcCCC------
Confidence 369999999964 124677888888665 66677855432110000000 000 00 0001211
Q ss_pred cceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 824 IRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 824 ~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
-+.||+|+|+.++.++|..|.+.+.+
T Consensus 388 --~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 388 --GTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp --SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred --CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 26999999999999999999998875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=81.36 E-value=8.7 Score=41.12 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEee-
Q 002866 704 KTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLGI- 782 (872)
Q Consensus 704 ~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr~- 782 (872)
.+..|.+.|.+.|...|..+.. .++++.| ..|..+.+.+-+. +...+.+++.++||.++.
T Consensus 314 ~~~~~~~~l~~~l~~~l~~~~~----------~~~~~~p----~~g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~ 374 (423)
T 3ez1_A 314 IIAPKFRAVDEVLRAELGEGGE----------YATWTLP----KGGYFISLDTAEP-----VADRVVKLAEAAGVSLTPA 374 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS----------SEEECCC----SBSSCEEEEESSS-----CHHHHHHHHHHTTEECCCT
T ss_pred HHHHHHHHHHHHHHHhcCcCCC----------ceEEeCC----CccEEEEEECCCC-----cHHHHHHHHHHCCcEEecC
Confidence 3445555666666655555441 1566665 3566777777542 567888888999999998
Q ss_pred cccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 783 GFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 783 G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
|.++... . .. .-+.||+|++.+ +.||+.++++-+.+++.
T Consensus 375 g~~~~~~----------~------------~~----------~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 413 (423)
T 3ez1_A 375 GATYPAG----------Q------------DP----------HNRNLRLAPTRP-PVEEVRTAMQVVAACIR 413 (423)
T ss_dssp TTTSSTT----------C------------CS----------SSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred cccccCC----------C------------CC----------CCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence 5444210 0 00 124899999988 99999999998888654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=81.34 E-value=6.6 Score=42.31 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=68.8
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHhccc-CCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHH
Q 002866 692 RHLDHINMLGLNKTTCRLRFLINWLVTSLLQLR-FSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQ 770 (872)
Q Consensus 692 ~gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~Lr-Hp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~Vq 770 (872)
..|++++. ..+..|++.+.++|...|.+|. +| .+..+- .+|.++.|.+.+ .++...+.
T Consensus 322 aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~---------~~~~~~-----~~g~~~~~~~~~----~~~~~~l~ 380 (429)
T 1s0a_A 322 ASLAILES---GDWQQQVADIEVQLREQLAPARDAE---------MVADVR-----VLGAIGVVETTH----PVNMAALQ 380 (429)
T ss_dssp HHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGGCT---------TEEEEE-----EETTEEEEEESS----CBCHHHHH
T ss_pred HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhcCC---------CEEEEE-----EeeEEEEEEECC----cccHHHHH
Confidence 34555544 3467888899999999999884 32 132221 247788888754 14555555
Q ss_pred HHHHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHH
Q 002866 771 KLAEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVA 850 (872)
Q Consensus 771 kLAdr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva 850 (872)
+.+.++||.++.+ -+.||+|+++..+.||++++++-+.
T Consensus 381 ~~l~~~Gi~v~~~------------------------------------------~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 381 KFFVEQGVWIRPF------------------------------------------GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp HHHHHTTEECCCB------------------------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCEEecc------------------------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5555678776420 0279999999999999999999999
Q ss_pred HhcC
Q 002866 851 KFLN 854 (872)
Q Consensus 851 ~Fld 854 (872)
++++
T Consensus 419 ~~~~ 422 (429)
T 1s0a_A 419 RAVQ 422 (429)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=80.86 E-value=5 Score=43.48 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCeEe
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGISLG 781 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~IsLr 781 (872)
+..+..+++.+.++|.+.|.++. +++++| ..|..+.+.+-+ .=...++++|+++.||.++
T Consensus 343 ~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~----~~~~~~~~~~~~----~~~~~~~~~l~~~~gI~v~ 402 (449)
T 3qgu_A 343 MNAMIKFYKENAQILKTTFTEMG------------FSVYGG----DDAPYIWVGFPG----KPSWDVFAEILERCNIVTT 402 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT------------CCEEES----SSSSEEEEECTT----SCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC------------CeeeCC----CCeeEEEEECCC----CCHHHHHHHHHHHCCEEEe
Confidence 45667788888889999998862 345554 347777777752 1124567788888899999
Q ss_pred ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHhcC
Q 002866 782 IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKFLN 854 (872)
Q Consensus 782 ~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~Fld 854 (872)
.|..+.+. +-+.||+|+ ..+.||+.++++-+.+++.
T Consensus 403 pg~~f~~~-----------------------------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 403 PGSGYGPA-----------------------------------GEGFVRASA--FGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp EGGGGCGG-----------------------------------GTTEEEEEC--CSCHHHHHHHHHHHHHHHC
T ss_pred cchHhCCC-----------------------------------CCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 98655320 023899995 4599999999999988654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=80.53 E-value=5.8 Score=42.05 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=75.4
Q ss_pred hcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHHHHcCCe
Q 002866 700 LGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLAEKEGIS 779 (872)
Q Consensus 700 lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLAdr~~Is 779 (872)
-++..+..|.+.+.++|...|.++. ++++.|. ..+..+.+.+.+. -++...+.+++.++||.
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~ 347 (425)
T 3ecd_A 286 DDFKTYIDRVLANAQALGDVLKAGG------------VDLVTGG---TDNHLLLVDLRPK---GLKGAQVEQALERAGIT 347 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT------------CEEGGGS---CSSSEEEEECGGG---TCCHHHHHHHHHHTTEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhCC------------CeeccCC---CCceEEEEEeCCC---CCCHHHHHHHHHHcCCE
Confidence 3566788899999999999998743 3555442 3567788777541 25678888888999999
Q ss_pred EeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCC----HHHHHHHHHHHHHhcCc
Q 002866 780 LGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTN----FEDVYKLWAFVAKFLNP 855 (872)
Q Consensus 780 Lr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSn----FEDVyrl~~Fva~Fld~ 855 (872)
++.+.... .. . . ......+|++++.+++ .||+.++.+.+.+.++.
T Consensus 348 v~~~~~p~------------~~--~-~----------------~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 348 CNKNGIPF------------DP--E-K----------------PTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp CEECCCTT------------CS--S-C----------------TTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecccccCC------------CC--C-C----------------CCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 98765210 00 0 0 0012479999999887 99999999999987654
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=5.7 Score=42.07 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccC---------hHHHHHH
Q 002866 702 LNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLIN---------PEVVQKL 772 (872)
Q Consensus 702 l~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~---------p~~VqkL 772 (872)
+..+..+.+.+.++|...|.++. ++++.| ..|..+.+++.+.. ..++ ..+++++
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~g------------~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 361 (410)
T 3e2y_A 299 FNSLPKELEVKRDRMVRLLNSVG------------LKPIVP----DGGYFIIADVSSLG-ADLSDMNSDEPYDYKFVKWM 361 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------------CEEEBC----SBSSEEEEECGGGC-CCCTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC------------CeecCC----CccEEEEEEchhhh-cccccccccccCHHHHHHHH
Confidence 44567778888888888888762 455655 34556666665421 1122 2778889
Q ss_pred HHHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHHh
Q 002866 773 AEKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAKF 852 (872)
Q Consensus 773 Adr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~F 852 (872)
++++||.+..|..|... .. ...+-+.||+|++. +.||+.++++-+.+|
T Consensus 362 l~~~gv~v~~g~~f~~~---~~---------------------------~~~~~~~iRis~~~--~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 362 TKHKKLTAIPVSAFCDS---KS---------------------------KPHFEKLVRFCFIK--KDSTLDAAEEIFRAW 409 (410)
T ss_dssp HHHHSEECEEGGGGSCT---TT---------------------------HHHHTTEEEEECCC--CHHHHHHHHHHHHTC
T ss_pred HHHcCEEEeCchhhCCC---CC---------------------------CCCCCCEEEEEEcC--CHHHHHHHHHHHHhc
Confidence 99999999998766320 00 00013489999887 999999999988765
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.17 E-value=3.2 Score=45.86 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=68.4
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHH
Q 002866 693 HLDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKL 772 (872)
Q Consensus 693 gLdh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkL 772 (872)
++++++..|...+..|.+.|.++|... . ++++++.. +..+.|++.+ ++...+.+.
T Consensus 257 a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g-----------~~~~~~~~----~~~l~i~~~~-----~~~~~l~~~ 311 (446)
T 2x3l_A 257 AAQFYKTYDSTLFFAKRAQLIECLENK-----G-----------FEMLQVDD----PLKLLIKYEG-----FTGHDIQNW 311 (446)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH-----T-----------CEEEECSS----TTEEEEECTT-----SCHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHc-----C-----------CEECcCCC----CeEEEEEeCC-----cCHHHHHHH
Confidence 577888888887888999999988866 1 45666531 2247887753 456666665
Q ss_pred HHHcCCeEe-ecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 773 AEKEGISLG-IGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 773 Adr~~IsLr-~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
+.++||.++ .| ...||+++++.+|.+|+ +|++.+.+
T Consensus 312 L~~~GI~v~~~g------------------------------------------~~~iRi~~~~~~t~e~i-~l~~aL~~ 348 (446)
T 2x3l_A 312 FMNAHIYLELAD------------------------------------------DYQALAILPLWHHDDTY-LFDSLLRK 348 (446)
T ss_dssp HHHTTEEESEEC------------------------------------------SSCEEEECCCCCTTCCC-CHHHHHHH
T ss_pred HHHCCCEEEecC------------------------------------------CCEEEEEeecCCCHHHH-HHHHHHHH
Confidence 555588875 21 12689999999999999 99999998
Q ss_pred hcC
Q 002866 852 FLN 854 (872)
Q Consensus 852 Fld 854 (872)
++.
T Consensus 349 ~~~ 351 (446)
T 2x3l_A 349 IED 351 (446)
T ss_dssp HHT
T ss_pred HHH
Confidence 754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 872 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.97 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.95 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.94 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.94 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.94 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.88 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.87 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.85 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.83 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.79 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.72 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.52 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.51 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.41 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.41 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.4 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.35 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.07 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 98.9 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 98.89 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 98.86 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.86 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 98.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.84 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 98.81 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.8 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.79 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.78 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.71 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.71 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.65 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.64 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 98.61 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.6 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 98.59 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.59 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.58 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 98.56 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.54 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.52 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.48 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 98.43 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 98.43 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.41 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.39 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.39 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.38 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.38 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.35 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 98.33 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.3 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.3 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.25 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.23 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.2 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.19 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 98.14 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.12 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.11 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.1 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.08 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.97 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.91 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 97.9 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 97.88 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 97.86 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 97.68 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 97.66 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 97.65 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 97.59 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 96.77 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 96.51 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 95.98 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 95.82 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 94.87 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 93.93 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 92.4 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 92.06 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 88.95 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 84.63 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 80.38 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-49 Score=429.34 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=192.9
Q ss_pred hHHHHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHH
Q 002866 135 KIDQLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVE 199 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~i 199 (872)
+++++|+ +||.|+. +|||||||+||+|+.|++++.+ +..+ .|+||++ .+.+
T Consensus 3 d~~~vR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~--------~~~~-----~~~n~~~~~~~~~~~~~~~~ 68 (405)
T d1jf9a_ 3 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE--------FYRH-----GYAAVHRGIHTLSAQATEKM 68 (405)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHH--------HHHH-----TCCCCSSCSSHHHHHHHHHH
T ss_pred CHHHHHH-hChhcccCcCCCCeEEEeCccccCCCHHHHHHHHH--------HHHh-----ccCCCccchhHHHHHHHHHH
Confidence 7999998 7999964 5999999999999999998543 2222 4667642 2678
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh---CCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES---YPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes---lpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+++|+.||++||+.+.+ .|+||+|+|+|+++++.+ ..+.+|++||+....+|+++.+|+.++++.|++|+++|++.
T Consensus 69 e~~R~~ia~~l~~~~~~-~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~ 147 (405)
T d1jf9a_ 69 ENVRKRASLFINARSAE-ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP 147 (405)
T ss_dssp HHHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT
T ss_pred HHHHHHHHHHcCCCCcc-cccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC
Confidence 99999999999986432 699999999999999987 56789999876632223446789999999999999999986
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
++.++.+.++.++. ++|+||+++|++|.||.++|++ +...||++|++++|||+|++|+ +++|+.+++|
T Consensus 148 -~g~~~~~~~~~~i~--------~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~--~~id~~~~~~ 216 (405)
T d1jf9a_ 148 -DGTLQLETLPTLFD--------EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDVQALDC 216 (405)
T ss_dssp -TSCBCGGGHHHHCC--------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTC
T ss_pred -CCcCCHHHHHHhcc--------CCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccc--cccchhhcCC
Confidence 68899998887664 4699999999999999999997 4567899999999999999998 7999999999
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
||+++|+||||| |.|+|+||++++.+..+.|.
T Consensus 217 D~~~~s~hK~~G--p~G~g~l~v~~~~~~~~~~~ 248 (405)
T d1jf9a_ 217 DFYVFSGHKLYG--PTGIGILYVKEALLQEMPPW 248 (405)
T ss_dssp SEEEEEGGGTTS--CSSCEEEEECHHHHTTCCCS
T ss_pred ceeecccccccc--CCCceeeeechhhhcccCcc
Confidence 999999999987 89999999999988877764
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=3.2e-47 Score=415.34 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=188.3
Q ss_pred HHHHHhhcccCCCC------ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHH
Q 002866 136 IDQLRANEYLHLSP------KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEH 200 (872)
Q Consensus 136 ID~lR~~EFP~L~~------~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ie 200 (872)
...+|+ +||.|+. +|||||+++||+|+.|++++.+ +..+ .|+||++ .+.++
T Consensus 4 ~a~iR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~--------~~~~-----~~~n~~s~~~~~~~~~~~~~e 69 (408)
T d1t3ia_ 4 AATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMH--------YYEN-----DNANVHRGAHQLSVRATDAYE 69 (408)
T ss_dssp HHHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHH--------HHHH-----TCCCC--CCSHHHHHHHHHHH
T ss_pred HHHHHH-hCcccccccCCCCeEEeeCccccCCCHHHHHHHHH--------HHHh-----cCCCCCchhhHHHHHHHHHHH
Confidence 446886 7999965 5999999999999999998543 2221 4677753 26889
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhH-HHHHHHHHHcCcEEEEEeccC
Q 002866 201 DIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSV-NWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 201 eARerIA~lLgA~~dEY~VVFTsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSV-l~~~~~AkrkGaeV~~Vpvd~ 276 (872)
++|+.||++||+++.+ .|+||+|+|+|+|+++.++ ++++|++|+++. .+|+++ .+|...+++.|++|+.+|.+.
T Consensus 70 ~aR~~ia~llga~~~~-~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~-~e~~s~~~~~~~~~~~~g~~v~~~~~~~ 147 (408)
T d1t3ia_ 70 AVRNKVAKFINARSPR-EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTV-MEHHSNLVPWQMVAAKTGAVLKFVQLDE 147 (408)
T ss_dssp HHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET-TCCGGGTHHHHHHHHHHCCEEEEECBCT
T ss_pred HHHHHHHHHhCCCCcc-cEEeecchHHHHHHHHhhccccccCCCCEEEeec-ccchhhhhhhhhhhhccCceEeeeeccc
Confidence 9999999999998544 5999999999999999874 678999988763 345555 567778899999999999876
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
.+.++.+.++.++. ++|+||+++|++|+||+++|+++| ..+|++|++++|||+|++|+ +++|+.+++|
T Consensus 148 -~~~~~~~~l~~~~~--------~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~--~~id~~~~~~ 216 (408)
T d1t3ia_ 148 -QESFDLEHFKTLLS--------EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDVQLIDC 216 (408)
T ss_dssp -TSSBCHHHHHHHCC--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTC
T ss_pred -cccccHHHhhhccC--------CCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccc--ccccccccCC
Confidence 56788888877664 369999999999999999999865 56899999999999999998 8999999999
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
||+++|+|||+| |.|+|+||++++.+..++|.
T Consensus 217 D~~~~s~hK~~g--p~G~g~l~v~~~~~~~~~p~ 248 (408)
T d1t3ia_ 217 DWLVASGHKMCA--PTGIGFLYGKEEILEAMPPF 248 (408)
T ss_dssp SEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCC
T ss_pred ceEEeccccccC--CCCccccccchhhhhcCCce
Confidence 999999999987 88999999999988777664
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=1.3e-40 Score=355.01 Aligned_cols=227 Identities=14% Similarity=0.173 Sum_probs=182.3
Q ss_pred cccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcC---CCchHHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 143 EYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYG---GAEKGTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 143 EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~yg---NpsS~~~ieeARerIA~lLgA~~dEY~V 219 (872)
|||.|++.+|||||++||.|..|++++.+. +..+..+ ..+. +......++++|+.+|+++|+++++ |
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~--i 70 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAM----YGYLQEN----GPFSIAANQHIQQLIAQLRQALAETFNVDPNT--I 70 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHH----HHHHHHH----CSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG--E
T ss_pred CCCCCCCCEEeeCCcccCCCHHHHHHHHHH----HHHhhcC----CCccchhhHHHHHHHHHHHHHHHHHhCCCccc--E
Confidence 699999999999999999999999986431 1222222 1111 1122367889999999999998874 9
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHH-HHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 220 VFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVN-WMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 220 VFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl-~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
+||+|+|+|+++++.++.+++|++|++.. .+|.++. .|...+++.|+++..+|.+... ..++..+.+.. ..
T Consensus 71 ~~~~g~t~a~~~~~~~l~~~~g~~i~~~~-~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~---~~~~~~~~l~~----~i 142 (381)
T d1elua_ 71 TITDNVTTGCDIVLWGLDWHQGDEILLTD-CEHPGIIAIVQAIAARFGITYRFFPVAATL---NQGDAAAVLAN----HL 142 (381)
T ss_dssp EEESSHHHHHHHHHHHSCCCTTCEEEEET-TCCHHHHHHHHHHHHHHCCEEEEECCGGGS---SSSCHHHHHHT----TC
T ss_pred EEECChHHHhhhcchhhhhcCCceEEEec-cccceeeecccccccccccccccccccccc---ccchHHHHHHh----hh
Confidence 99999999999999999999999988764 4677664 5666778889999999876432 22233333432 23
Q ss_pred CCCceEEEEeCccCcccchhcHHHH-HHHHH----CCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCce
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQ----NHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGF 373 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are----~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGv 373 (872)
+++|++|++++++|.||+++|+++| +.||+ .++.+++|++|++|+ .++|+.++++||+++|+|||+++ |.|+
T Consensus 143 ~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~--~~~~~~~~~~D~~~~s~~K~~~~-p~G~ 219 (381)
T d1elua_ 143 GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVDYYAFTGHKWFAG-PAGV 219 (381)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCSEEEEESSSTTCC-CTTC
T ss_pred cccccccccccccccccccchhhHHHHHHhhccccccccccccccccccc--ccccccccccccccccccccccc-cchh
Confidence 5689999999999999999999865 56776 479999999999997 79999999999999999999998 9999
Q ss_pred EEEEEeCCCcccccCCC
Q 002866 374 GCLLIKKSVMGSLQNQS 390 (872)
Q Consensus 374 G~LyVRk~~i~~L~P~~ 390 (872)
|+||++++....+.|..
T Consensus 220 g~l~~~~~~~~~~~p~~ 236 (381)
T d1elua_ 220 GGLYIHGDCLGEINPTY 236 (381)
T ss_dssp EEEEECTTTGGGCCCCS
T ss_pred hHHHhhHHHHHhcCccc
Confidence 99999999999998864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.5e-38 Score=335.32 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=176.3
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
.|||||+|++|+|+.|++++.+ ++ . ..|+||++ .+.++++|++||+++||++++ |+|
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~-------~~-~-----~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~--i~~ 66 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIV-------FY-R-----EKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE--IFF 66 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHH-------HH-H-----TCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG--EEE
T ss_pred EEEEECcccccCCHHHHHHHHH-------HH-H-----HcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCc--EEE
Confidence 5999999999999999998532 12 2 25788863 357889999999999999875 999
Q ss_pred eCCHHHHHHHHHhhC---CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCC
Q 002866 222 TVSRGSAFKLLAESY---PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKK 298 (872)
Q Consensus 222 TsnATeALnLVaesl---pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~ 298 (872)
|+|+|+|+++++.++ .+.+|+.+++.. .+|.++..+.+.++++|++|+++|++. ++.++.++++++|..
T Consensus 67 ~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~~g~~v~~vp~~~-~~~id~~~l~~~i~~------ 138 (376)
T d1eg5a_ 67 TSCATESINWILKTVAETFEKRKRTIITTP-IEHKAVLETMKYLSMKGFKVKYVPVDS-RGVVKLEELEKLVDE------ 138 (376)
T ss_dssp ESCHHHHHHHHHHHHHHHTTTTCCEEEECT-TSCHHHHHHHHHHHHTTCEEEECCBCT-TSCBCHHHHHHHCCT------
T ss_pred ECCHHHHHHhhhhcccccccccCccccccc-ccchhhHHHHHHHHhcCCEEEEEcCCC-CCeECHHHHHHhcCC------
Confidence 999999999998753 456677777764 456777777788888999999999986 689999999988853
Q ss_pred CCCceEEEEeCccCcccchhcHHHHHH-H--HHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEE
Q 002866 299 DSAAGLFVFPVQSRVTGAKYSYQWMAL-A--QQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGC 375 (872)
Q Consensus 299 ~~~T~LVa~p~vSNvTG~i~PLe~I~~-A--re~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~ 375 (872)
+|+||+++|++|.||.++|++.+.. + +..++.++||++|++|+ +++|+.+++|||+++|+|||+| |.|+|+
T Consensus 139 --~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~--~~~d~~~~~~D~~~~s~~K~~g--p~G~~~ 212 (376)
T d1eg5a_ 139 --DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PKGVGI 212 (376)
T ss_dssp --TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CTTCEE
T ss_pred --CceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccc--ccccccccCccceecccceeec--CCCcee
Confidence 6999999999999999999986643 3 56699999999999997 8999999999999999999987 899999
Q ss_pred EEEeCCCcccccCC
Q 002866 376 LLIKKSVMGSLQNQ 389 (872)
Q Consensus 376 LyVRk~~i~~L~P~ 389 (872)
||++++. .++|.
T Consensus 213 l~~~~~~--~~~p~ 224 (376)
T d1eg5a_ 213 TYIRKGV--PIRPL 224 (376)
T ss_dssp EEECTTS--CCCCS
T ss_pred EEeccCc--ccCCc
Confidence 9999874 35543
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=3.6e-38 Score=337.37 Aligned_cols=222 Identities=12% Similarity=0.123 Sum_probs=168.4
Q ss_pred HHHHHhhcccCCCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch--------HHHHHHHHHHHH
Q 002866 136 IDQLRANEYLHLSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK--------GTVEHDIKTRIM 207 (872)
Q Consensus 136 ID~lR~~EFP~L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS--------~~~ieeARerIA 207 (872)
+..+|+ +||.+++.||||||+++|+|+.|++++.+ +..+ .++|+.. .+.++++|++||
T Consensus 15 l~~~R~-~F~~~~~~iYLd~as~g~~p~~v~~a~~~--------~l~~-----~~~~~~~~~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 15 LAPLRQ-QFALPEGVIYLDGNSLGARPVAALARAQA--------VIAE-----EWGNGLIRSWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp TGGGGG-GBCCCTTCEECCTTTSCCCBTTHHHHHHH--------HHHT-----CCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred HHHHHh-cCCCCCCCEEcCCcccccCCHHHHHHHHH--------HHHH-----HhcccCcccccchhHHHHHHHHHHHHH
Confidence 455675 69998889999999999999999998643 2111 2344331 257889999999
Q ss_pred HhcCCCCCCCcEEEeCCHHHHHHHHHhhC-----CCCCCCeEEEecccCchhHHHHHHH-HHHcCcEEEEEeccCCCCcc
Q 002866 208 DHLNIPENEYGLVFTVSRGSAFKLLAESY-----PFHTNKKLLTMFDYESQSVNWMAQS-AKEKGAKVYSAWFKWPTLKL 281 (872)
Q Consensus 208 ~lLgA~~dEY~VVFTsnATeALnLVaesl-----pf~~Gd~ILT~~DhEHnSVl~~~~~-AkrkGaeV~~Vpvd~p~g~I 281 (872)
+++||++++ |+||+|+|+++++++.++ .+.+++.+++....++.+...+.+. ++.....+. . .+.+
T Consensus 81 ~llga~~~e--i~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 152 (404)
T d1qz9a_ 81 TLIGARDGE--VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT-----L-RLVD 152 (404)
T ss_dssp TTTTCCTTS--EEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE-----E-EEES
T ss_pred HHhCCCCCc--EEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeecee-----c-cccc
Confidence 999999986 999999999999877643 2356776554432223344444433 332222222 2 2445
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEE
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIIT 360 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~ 360 (872)
+.++++++|. ++|+||+++|++|+||+++|+++| +.||++|+.++||++|++|+ +++|+..+++||+++
T Consensus 153 ~~~~~~~~i~--------~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~--~~~~~~~~~~d~~~~ 222 (404)
T d1qz9a_ 153 SPEELPQAID--------QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA--VPVDLHQAGADYAIG 222 (404)
T ss_dssp SGGGHHHHCS--------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEEE
T ss_pred cchhHHHhcC--------CCceEEEEecccccccceecHHHHhccccccccceeEEeeccccc--cccccccccceEEEE
Confidence 6677777664 469999999999999999999855 67899999999999999998 799999999999999
Q ss_pred cccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 361 SFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 361 S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
|+|||++++|.|.|++|+++..++.+.+.
T Consensus 223 s~~K~~~~~~g~~g~~~~~~~~~~~~~~~ 251 (404)
T d1qz9a_ 223 CTYKYLNGGPGSQAFVWVSPQLCDLVPQP 251 (404)
T ss_dssp CSSSTTCCCTTCCCEEEECTTTTTTSCCS
T ss_pred echhhcccCCceEEEEEechhhhhhCCcc
Confidence 99999765366789999999988777654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-37 Score=327.29 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=182.8
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCch---------HHHHHHHHHHHHHhcCCCCCCCcEE
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEK---------GTVEHDIKTRIMDHLNIPENEYGLV 220 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS---------~~~ieeARerIA~lLgA~~dEY~VV 220 (872)
.|||||+|+||+|+.|++++.+ + +.....||||++ .+.++++|++||+++|+++++ |+
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~--~---------~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~--I~ 69 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQ--F---------MTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE--IV 69 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHT--T---------TSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EE
T ss_pred eEEeeCccccCCCHHHHHHHHH--H---------HHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCc--EE
Confidence 6899999999999999998654 1 112346788863 357899999999999999874 99
Q ss_pred EeCCHHHHHHHHHhhCC---CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccC
Q 002866 221 FTVSRGSAFKLLAESYP---FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 221 FTsnATeALnLVaeslp---f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~ 297 (872)
||+|+|+|++.++.++. +++|++||+. +.+|.++..+.+.++..|++|+.+|.+. .+.++.++++++|.
T Consensus 70 ~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~-~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~~~~~i~------ 141 (391)
T d1p3wa_ 70 FTSGATESDNLAIKGAANFYQKKGKHIITS-KTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMR------ 141 (391)
T ss_dssp EESSHHHHHHHHHHHHHHHHGGGCCEEEEE-TTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCC------
T ss_pred EECCHHHHHHHHHhhhhhhhcCCCCEEEEe-ccccchHHHHHHHHHHcCCEEEEeCCCC-CCeEcHHHHHHhCC------
Confidence 99999999999998753 5789998877 4567788777777888999999999985 57889999988875
Q ss_pred CCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCL 376 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~L 376 (872)
++|+||++++++|.||+++|+++ .+.||++|+++++|++|++|. .++|+..+++||+++|+|||+| |.|+|++
T Consensus 142 --~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~--~~~d~~~~~~D~~~~s~~k~~g--~~g~g~~ 215 (391)
T d1p3wa_ 142 --DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKGIGAL 215 (391)
T ss_dssp --TTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTT--BCCCTTTSCCSEEEEESTTTTS--CSSCEEE
T ss_pred --CCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCC--ccccchhccccccccccccccC--CCceEEE
Confidence 36999999999999999999985 467799999999999999997 7999999999999999999988 7899999
Q ss_pred EEeCCCcccccCC
Q 002866 377 LIKKSVMGSLQNQ 389 (872)
Q Consensus 377 yVRk~~i~~L~P~ 389 (872)
|++++.+..+.|.
T Consensus 216 ~~~~~~~~~~~~~ 228 (391)
T d1p3wa_ 216 YVRRKPRVRIEAQ 228 (391)
T ss_dssp EECBTTBCCCCCS
T ss_pred EEecchhcccCCc
Confidence 9999987766654
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.7e-29 Score=266.22 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=163.7
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
+|=..|-+++++.|++++.. ... .+-.+...++++++|+.++++||++. +|.|+||.|+|+|++.
T Consensus 21 ~l~~pGP~~~~~~Vl~am~~-----------~~i---~HRs~~f~~i~~ea~~~l~~llg~~~-~~~ii~~gsgT~a~~~ 85 (388)
T d1h0ca_ 21 LLLGPGPSNLPPRIMAAGGL-----------QMI---GSMSKDMYQIMDEIKEGIQYVFQTRN-PLTLVISGSGHCALEA 85 (388)
T ss_dssp EECSSSCCCCCHHHHHHHTC-----------CCC---CTTSHHHHHHHHHHHHHHHHHHTCCC-SEEEEESSCHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhCc-----------CCC---CCCCHHHHHHHHHHHHHHHHHhCCCC-CcEEEEcCcHHHHHHH
Confidence 44345566788899887422 111 12233345889999999999999974 5789999999999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++ +.+|+++++... +|.+.. +...++..+..+..++.++ ...++.+++++.+... ++++|+++|++
T Consensus 86 ~i~~l-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~v~~~~~~ 154 (388)
T d1h0ca_ 86 ALVNV-LEPGDSFLVGAN-GIWGQR-AVDIGERIGARVHPMTKDP-GGHYTLQEVEEGLAQH-------KPVLLFLTHGE 154 (388)
T ss_dssp HHHHH-CCSSCCEEECBS-SHHHHH-HHHHHHHHC--CBCCBCCT-TCCCCHHHHHHHHHHH-------CCSEEEEESEE
T ss_pred HHHHh-hccCCceeeecc-cceeee-eccccccccccccccccCC-ccccchHHHHHHhccC-------CcceEEEeeee
Confidence 99988 457888766533 445443 4455677788888888776 3567888887777642 58999999999
Q ss_pred CcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 312 RVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 312 NvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|.||+++|++ +...||++|+.++|||+|++|+ +++|+..+++||+++|+|||+++ |.|+|++|+++..++.+.+
T Consensus 155 n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~--~~~d~~~~~~D~~~~s~~K~~~g-p~g~~~~~~~~~~~~~~~~ 229 (388)
T d1h0ca_ 155 SSTGVLQPLDGFGELCHRYKCLLLVDSVASLGG--TPLYMDRQGIDILYSGSQKALNA-PPGTSLISFSDKAKKKMYS 229 (388)
T ss_dssp TTTTEECCCTTHHHHHHTTTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CTTCEEEEECHHHHHHHTT
T ss_pred eccccccCHHHHHHHhhcccccceecccccccc--ccccccccccceecccccccccC-CCceEEEeecHHHHHhhhh
Confidence 9999999997 5677899999999999999998 79999999999999999999998 9999999999988776654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6e-27 Score=249.00 Aligned_cols=207 Identities=14% Similarity=0.066 Sum_probs=156.8
Q ss_pred CCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCC--CCCCcEEEeCCHHHHHHHHHh
Q 002866 157 GFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIP--ENEYGLVFTVSRGSAFKLLAE 234 (872)
Q Consensus 157 Atgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~--~dEY~VVFTsnATeALnLVae 234 (872)
|=+++|+.|++|+... . ..+..+...+.+.++++.+.+++++. .+...|+||+|+|+|++.++.
T Consensus 10 GP~~v~~~V~~Am~~~-----------~---~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~ 75 (382)
T d2bkwa1 10 GPIILSGAVQKALDVP-----------S---LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFAS 75 (382)
T ss_dssp SSCCCCHHHHHTTSCC-----------C---CCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHhCcc-----------c---CCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 3456788888874220 0 01123344566777888887887752 122359999999999999999
Q ss_pred hC--CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccC
Q 002866 235 SY--PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSR 312 (872)
Q Consensus 235 sl--pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSN 312 (872)
++ +|++|+++++.. ++|.+.. +...+++.|..+..+........++.+.+++++.. .++++++++|+++
T Consensus 76 ~l~~~~~~gd~vlv~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~ 146 (382)
T d2bkwa1 76 NFILSKAPNKNVLVVS-TGTFSDR-FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-------NSYGAVTVTHVDT 146 (382)
T ss_dssp HHSCTTCSCCEEEEEC-SSHHHHH-HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-------SCCSEEEEESEET
T ss_pred HHHHhcCCCCceEEEE-echhhhh-hhhhccccccccccccccCCCCccchhHHHHHhhh-------ccchheeeeeccc
Confidence 86 678899987763 3444443 34456778888887765444456778888877754 2588999999999
Q ss_pred cccchhcHHHHH-HH--HHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 313 VTGAKYSYQWMA-LA--QQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 313 vTG~i~PLe~I~-~A--re~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
.||+++|++.+. .+ +.+++.++|||+|++|+ +|+|+..+++||+++|+|||+++ |.|+|+||++++.++.+.+.
T Consensus 147 ~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~--~pid~~~~giD~~~~s~~K~l~g-P~G~g~l~vs~~~~~~~~~~ 223 (382)
T d2bkwa1 147 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIGA-PAGLSISLCSSRFMDYALND 223 (382)
T ss_dssp TTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CSCEEEEEECHHHHHHHTCH
T ss_pred cccccccchhhhhhccccccceeeeeeccccccc--ccccccccCeeEEeecccccCcC-CCchhhhhccHHHHhhhhhc
Confidence 999999998654 33 45679999999999998 79999999999999999999977 99999999999998877654
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=7.3e-26 Score=237.46 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
.+.++++|+++++++|+++++..|+||.|+|+|+++++.++.++.+..+++...+. ..... ..++..+..+..+...
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~ 108 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAY-GARMV--EMAGLMGIAHHAYDCG 108 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHH-HHHHH--HHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhh-hhhHH--HHhhhhhccccccccc
Confidence 36789999999999999887656899999999999999999876666666654433 22222 2233445555555544
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFR 354 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~ 354 (872)
.. .....+........ .+++++++++|++|.||.++|++. ...||++|+.++|||+|++|. +++|+.+++
T Consensus 109 ~~-~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~--~~~d~~~~~ 179 (361)
T d1m32a_ 109 EV-ARPDVQAIDAILNA------DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALH 179 (361)
T ss_dssp TT-SCCCHHHHHHHHHH------CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTT
T ss_pred cc-CCccchhhHHHHHh------ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCc--ccccccccc
Confidence 32 22233322222221 346999999999999999999985 567899999999999999997 799999999
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCcccccCC
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQNQ 389 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P~ 389 (872)
+||+++|+|||+++ |.|+|+||++++.+..++|.
T Consensus 180 ~D~~~~s~~K~l~g-p~G~g~l~~~~~~~~~~~~~ 213 (361)
T d1m32a_ 180 IDYLISSANKCIQG-VPGFAFVIAREQKLAACKGH 213 (361)
T ss_dssp CSEEEEESSSTTCC-CSSEEEEEEEHHHHTTCTTC
T ss_pred cceEEeeecccccC-CCCceEEEechhhhhhhccc
Confidence 99999999999988 89999999999988777664
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.94 E-value=2e-25 Score=235.01 Aligned_cols=210 Identities=11% Similarity=0.018 Sum_probs=163.2
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAF 229 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeAL 229 (872)
..||...|-+++|+.|++++.. ... .+-.++..++++++|+.++++||++. +|.|+||.|+|+|+
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~-----------~~~---~hr~~ef~~i~~~~r~~l~~ll~~~~-~~~i~~~g~gT~~~ 82 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNV-----------SPV---GHLDPAFLALMDEIQSLLRYVWQTEN-PLTIAVSGTGTAAM 82 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSS-----------CCC---CTTSHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhCc-----------CCC---CCCCHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHHHH
Confidence 5689999999999999987532 111 12234456899999999999999964 57899999999999
Q ss_pred HHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeC
Q 002866 230 KLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPV 309 (872)
Q Consensus 230 nLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~ 309 (872)
+.++.++. .+|++++.... .|.+. ++...++..+..+..+..... .....+........ .++.+|++++
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~v~~~~ 151 (377)
T d1vjoa_ 83 EATIANAV-EPGDVVLIGVA-GYFGN-RLVDMAGRYGADVRTISKPWG-EVFSLEELRTALET-------HRPAILALVH 151 (377)
T ss_dssp HHHHHHHC-CTTCEEEEEES-SHHHH-HHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHH-------HCCSEEEEES
T ss_pred HHHHHhcc-ccccccceeee-chhhh-hhhhhhhhhcccccccccCCC-Ccccchhhhhhhhc-------Ccceeeeeee
Confidence 99998874 56777654322 33433 344456677777777776653 33455555544433 2589999999
Q ss_pred ccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 310 QSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 310 vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++|.||+++|++ +...+|++|+.++|||+|++|. +++|+..+++||+++|+|||+++ |.|+|++++++..++...+
T Consensus 152 ~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~--~~~~~~~~~~d~~~~s~~K~~~g-p~g~~~~~~~~~~~~~~~~ 228 (377)
T d1vjoa_ 152 AETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQKGLGC-SPGASPFTMSSRAIEKLQR 228 (377)
T ss_dssp EETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCS-CSSCEEEEECHHHHHHHHT
T ss_pred eeccceeeechhhhhhhhhhccceEEEecchhhhh--hhhcccccccceeeecccccccC-CCEEEEecchhhHHhhhhc
Confidence 999999999997 5678899999999999999997 79999999999999999999888 8999999999987765554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.94 E-value=4.1e-25 Score=234.36 Aligned_cols=208 Identities=12% Similarity=0.044 Sum_probs=161.1
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
+|=..|=+.+++.|++|+.+. .. .+-.+...++++++|+.|+++||++. .+.|+||.|+|.|++.
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~-----------~~---~hr~~ef~~i~~~~r~~L~~ll~~~~-~~~i~~~gsgT~a~ea 83 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNT-----------VL---SNFHAELFRTMDEVKDGLRYIFQTEN-RATMCVSGSAHAGMEA 83 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSC-----------CC---CTTCHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhCcC-----------CC---CCCCHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHHHHHH
Confidence 555566667889999875321 00 12234456899999999999999963 3357778899999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++. .+|+++++... .|.+. .+...+++.|..+..++..+. ...+.++++..+... ++++++++|++
T Consensus 84 ~~~~l~-~~~~~vl~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~v~~~~~~ 152 (388)
T d2ch1a1 84 MLSNLL-EEGDRVLIAVN-GIWAE-RAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELH-------QPKCLFLTHGD 152 (388)
T ss_dssp HHHHHC-CTTCEEEEEES-SHHHH-HHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHH-------CCSEEEEESEE
T ss_pred HHHHhc-ccccccccccc-ccccc-cchhhhhhhcccccccccccc-cccchhhhhhhhccC-------Ccceeeeeecc
Confidence 999984 56777765533 33444 344556778888888888764 456667676665432 58999999999
Q ss_pred CcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 312 RVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 312 NvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|.||.++|++ +...+|++|+.++||++|++|. .++|+.++++||+++|.|||+++ |.|+|++|+++..++.+.+
T Consensus 153 t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~--~pid~~~~~~d~~~~s~~K~~~g-p~G~g~~~~~~~~~~~~~~ 227 (388)
T d2ch1a1 153 SSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-PPGITPISISPKALDVIRN 227 (388)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-CSSCEEEEECHHHHHHHHT
T ss_pred cccccccchhhhcchhccccceeeeeeeecccc--cccchhccCceEEEEccccccCC-CCeEEEEeccHHHHHhhhc
Confidence 9999999998 4567899999999999999998 79999999999999999999998 9999999999988766654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.88 E-value=5.7e-23 Score=215.24 Aligned_cols=206 Identities=11% Similarity=-0.047 Sum_probs=145.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcC----cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHAL----YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~----ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
+||..++|-+++|++|++++.++ .. .+. +.. ... +-.+...++++++|+.|++|||+++ +|.|+|++|+
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~-~~---~~~-~~~-~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~-~~~i~~~~gt 75 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKE-LL---NFN-DTQ-MSVMELSHRSQSYEEVHEQAQNLLRELLQIPN-DYQILFLQGG 75 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHT-SS---SST-TSS-SCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHH-HH---hhc-ccC-ccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-CCEEEEeCCc
Confidence 68988899999999999986432 00 000 000 000 1122235789999999999999964 6789999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
|++.+.++-...+..++.+++...++ . ...|...+++.|..+......+.. ....+++ .. .++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~v~~~~~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~--------~~~~~ 140 (360)
T d1w23a_ 76 ASLQFTMLPMNLLTKGTIGNYVLTGS-W-SEKALKEAKLLGETHIAASTKANS-YQSIPDF----SE--------FQLNE 140 (360)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEECSH-H-HHHHHHHHHTTSEEEEEEECGGGT-SCSCCCG----GG--------CCCCT
T ss_pred HHHHHHHHHhhhcccCcccceeeccc-h-hhhhHHHHHHhhhcceeecccccc-ccchhhh----hh--------ccccc
Confidence 99998888776666777776664433 3 334555677778777776654421 1222222 11 23445
Q ss_pred EEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 306 VFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
.++|++|.||++.|++. ...||++|+.++|||+|++|+ +++|++++++||++++.||+++ .|.|+++.++..
T Consensus 141 ~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~--~~id~~~~~vd~~~~~~~k~~~---~~~~~~~~~~~~ 213 (360)
T d1w23a_ 141 NDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILS--RPLKVNQFGMIYAGAQKNLGPS---GVTVVIVKKDLL 213 (360)
T ss_dssp TEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTS--SCCCGGGCSEEEEETTTTTSCT---TCEEEEEEHHHH
T ss_pred ccceeEecCCccccceeeeeccccceeeEEeeccccccc--cccccccccceEEeeccccccC---CcceeeEechhh
Confidence 57799999999999974 567899999999999999998 7999999999999999999754 367777765543
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=1.2e-21 Score=204.54 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW- 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~- 276 (872)
+.+.+++++|+++|++ .++||+|+|+|+.+++.++ .++||+||+. +.+|.++.. .++..|+++..+|++.
T Consensus 48 l~~~~~~~~A~~~g~e----~~~~t~g~t~a~~~~~~al-~~~gd~Vi~~-~~~h~s~~~---~~~~~g~~v~~v~~~~~ 118 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMD-ENCHYSSYV---AAERAGLNIALVPKTDY 118 (364)
T ss_dssp HHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEE-TTCCHHHHH---HHHHTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHhCcC----EEEEECcHHHHHHHHHHHH-hCCCcEEEee-cccccccch---HHHhccceEEEeeeccc
Confidence 5677899999999984 3899999999999999988 4789998876 456776653 3456899999999853
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+++.++.++++++|...+ +..++.||++++.+|+||.++|++ +++.|+++|+++++|+||++|+ +++++..+++
T Consensus 119 ~~~~i~~~~l~~~i~~~~---k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~--~~~~~~~~g~ 193 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETK---KRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGA 193 (364)
T ss_dssp TTCCCCHHHHHHHHHHHT---TTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTC
T ss_pred cccccCHHHHHhhhhhhc---ccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhh--hhhccccccc
Confidence 356789999999997653 234688999999999999999997 5678899999999999999997 7899999999
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
|++++|+||+||+ |.|+|+|+++++.++.+.
T Consensus 194 D~~~~S~~K~~~~-~g~~g~l~~~~~~~~~~~ 224 (364)
T d2e7ja1 194 DFIVGSGHKSMAA-SGPIGVMGMKEEWAEIVL 224 (364)
T ss_dssp SEEEEEHHHHSSC-CSSCEEEEECTTTTTTTT
T ss_pred ceeeeccccccCC-CCCEEEEEECHHHHHHHH
Confidence 9999999999997 778999999998776553
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1e-21 Score=203.51 Aligned_cols=207 Identities=11% Similarity=-0.070 Sum_probs=142.0
Q ss_pred cCCCCCCcHHHHHHhhhcccccHHHHHHhhccC-cCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHH
Q 002866 155 YCGFGLFSYIQTLHYWESSTFSLSEITANLSNH-ALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLA 233 (872)
Q Consensus 155 yAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~-~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVa 233 (872)
+.|-+.+|++|++++.+. + +.+....+.-+ ..+-.++..++++++|+.|+++||++. +|.|+||+|+|++.+.++
T Consensus 6 ~pGP~~~p~~Vl~a~~~~--~-~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~-~~~v~~~~gs~t~~~~a~ 81 (360)
T d1bjna_ 6 SSGPAMLPAEVLKQAQQE--L-RDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-NYKVLFCHGGGRGQFAAV 81 (360)
T ss_dssp CSSSCCCCHHHHHHHHHT--S-SSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHH--H-hhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCchHHHHhhh
Confidence 455566899999986541 0 00000000000 001123345789999999999999964 568999999999988877
Q ss_pred hhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCc
Q 002866 234 ESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRV 313 (872)
Q Consensus 234 eslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNv 313 (872)
-..-+.+++.+++. ++. ....+|...+++.|+.+......+. ...+..+++..+ ..+++++++.+.+|.
T Consensus 82 ~~~~~~~~~~v~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~v~v~~~~~~ 150 (360)
T d1bjna_ 82 PLNILGDKTTADYV-DAG-YWAASAIKEAKKYCTPNVFDAKVTV-DGLRAVKPMREW--------QLSDNAAYMHYCPNE 150 (360)
T ss_dssp HHHHCTTCCEEEEE-ESS-HHHHHHHHHHTTTSEEEEEECEEEE-TTEEEECCGGGC--------CCCSSCSCEEECSEE
T ss_pred hhccccccccccee-ccc-chhhhhHHHHhhcCccceeeccccC-CCcchhhhhhhh--------ccCCceeEEEecccc
Confidence 65544556665554 333 4456677778888888777665542 333333333222 346889999999999
Q ss_pred ccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 314 TGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 314 TG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
||+.+|+..+ .++.+++.|++|++|+++. +++|. .++|++++|+||++|. |.|.|++++.+..
T Consensus 151 t~~~~~~~~i-~~~~~~~~v~vDa~~~~~~--~~vd~--~~~dv~~~ss~k~~~~-~~~~~~~~~~~~~ 213 (360)
T d1bjna_ 151 TIDGIAIDET-PDFGADVVVAADFSSTILS--RPIDV--SRYGVIYAGAQKNIGP-AGLTIVIVREDLL 213 (360)
T ss_dssp TTTTEECCCC-CCCCTTCCEEEECTTTTTS--SCCCG--GGCSEEEEETTTTTSS-TTCEEEEEEGGGC
T ss_pred cccCccccce-ecccccceeeeeeeccccc--eeeee--ccceeEEEEccccccc-CCCceeEeeehhh
Confidence 9999998643 2477889999999999986 56655 5689999999999998 7788888876654
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5.5e-19 Score=195.95 Aligned_cols=209 Identities=12% Similarity=-0.045 Sum_probs=148.6
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCC---CcEEEeCCHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENE---YGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dE---Y~VVFTsnAT 226 (872)
..+|....+|.+++.+.+.+.+ .+..|+.+.. .-|.+.++..++.+.+|+++|++... ..=+||+|+|
T Consensus 55 ~~n~asf~~t~~~~~~~~l~~~-------~~~~N~~~~~--~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgS 125 (450)
T d1pmma_ 55 RQNLATFCQTWDDENVHKLMDL-------SINKNWIDKE--EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS 125 (450)
T ss_dssp GGBCSCCSCCCCCHHHHHHHHH-------TTTCBTTCTT--TSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHH
T ss_pred cccccccccCCCCHHHHHHHHH-------HHhcCCCCcc--cCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchH
Confidence 3444444566777766554322 1222221111 12555678889999999999996432 1258999999
Q ss_pred HHHHHHHhhCCC----------CCCC-eEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhc
Q 002866 227 SAFKLLAESYPF----------HTNK-KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKR 295 (872)
Q Consensus 227 eALnLVaeslpf----------~~Gd-~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~r 295 (872)
+|+.+.+.+..+ ...+ .++++.. .|. .|.++|+..|++++.||++..+++++.++|+++|..
T Consensus 126 eA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~-~H~---s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~--- 198 (450)
T d1pmma_ 126 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQI---CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE--- 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESS-CCH---HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT---
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecc-cHH---HHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh---
Confidence 998876554321 1122 2444433 355 455677888999999999876799999999988853
Q ss_pred cCCCCCceEEEEeCccCcccchhcHHHHH-------HHHHCCcEEEeeccccCCCCCccC-------CCCCCCCcEEEEc
Q 002866 296 RKKDSAAGLFVFPVQSRVTGAKYSYQWMA-------LAQQNHWHVLLDAGSLGPKDMDSL-------GLSLFRPDFIITS 361 (872)
Q Consensus 296 r~~~~~T~LVa~p~vSNvTG~i~PLe~I~-------~Are~G~~VLVDAAQ~aG~~mipL-------DLs~l~~DFlv~S 361 (872)
+|.+|+.++.++.||.+-|++.|. .++++|+++|||||+.++. .++ +....++|++++|
T Consensus 199 -----~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~--~p~~~~~~~~~~~~~~aDSi~~s 271 (450)
T d1pmma_ 199 -----NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL--APFVAPDIVWDFRLPRVKSISAS 271 (450)
T ss_dssp -----TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT--HHHHCTTCCCSTTSTTEEEEEEE
T ss_pred -----CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccce--eeeechhhhhhhcccceeEeecC
Confidence 589999999999999999997432 2577899999999987764 333 3334579999999
Q ss_pred ccccCCCCCCceEEEEEeCCC
Q 002866 362 FYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 362 ~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+|||++. |.|+|+|++|+..
T Consensus 272 ~HK~~~~-p~g~g~l~~r~~~ 291 (450)
T d1pmma_ 272 GHKFGLA-PLGCGWVIWRDEE 291 (450)
T ss_dssp TTTTTCC-CSSCEEEEESSGG
T ss_pred hhhccCC-CCCeeEEEecChh
Confidence 9999888 9999999999753
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.79 E-value=2e-19 Score=189.54 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=137.0
Q ss_pred cCCCCCCcHHHHHHhhhcccccHHHHHHhhccCc---------CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCH
Q 002866 155 YCGFGLFSYIQTLHYWESSTFSLSEITANLSNHA---------LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSR 225 (872)
Q Consensus 155 yAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~---------~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnA 225 (872)
..|-+++|+.|++++.+ .+.++. .+-.+...++++++|+.|+++||++. +|.|+|++|+
T Consensus 8 ~pGP~~vp~~V~eam~~-----------~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~-~~~i~~~~gs 75 (361)
T d2c0ra1 8 NAGPAALPLEVLERAQA-----------EFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT-GYKVLFIQGG 75 (361)
T ss_dssp CSSSCCCCHHHHHHHHH-----------TSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCS-SEEEEEESSH
T ss_pred CCCCcCCCHHHHHHHHH-----------HHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCC
Confidence 35566789999998643 111100 01122335799999999999999974 6889999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEE
Q 002866 226 GSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLF 305 (872)
Q Consensus 226 TeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LV 305 (872)
+++.+-++-...+.+++.++.. .+. .....|.+.+++.|.++..++.++. ..++.+++++.+.. .
T Consensus 76 ~t~~~ea~~~~l~~~~~~~l~~-~~g-~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~---------~--- 140 (361)
T d2c0ra1 76 ASTQFAMIPMNFLKEGQTANYV-MTG-SWASKALKEAKLIGDTHVAASSEAS-NYMTLPKLQEIQLQ---------D--- 140 (361)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEE-ECS-HHHHHHHHHHHHHSCEEEEEECGGG-TTCSCCCGGGCCCC---------T---
T ss_pred chHHHHHHHhccccCCCceEEE-eec-hhhhhhhhhhhhcCceeeeeccccc-cccchhhhhhhccc---------C---
Confidence 9887766655556677776554 333 3456778889999999999998874 45666666543321 1
Q ss_pred EEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 306 VFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 306 a~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+.+++|+||...|+.. ...++++|+.|+|||+|++|+ +++|+.++++|| ++++|.+|. | |.+++++...
T Consensus 141 ~~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~--~~id~~~~di~~--~s~~k~~~~-~-~~~~~~~~~~ 211 (361)
T d2c0ra1 141 NAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILS--RPFDLNQFGLVY--AGAQKNLGP-S-GVTVVIVRED 211 (361)
T ss_dssp TEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTS--SCCCGGGCSEEE--EETTTTTCC-S-SCEEEEEEGG
T ss_pred cceEEEEecccceecceEEEeeccCCceEEEEeeccccc--cccccccceeEE--Eeccccccc-c-cCcEEEEEhH
Confidence 14577899999999974 456799999999999999998 799998876665 567888885 4 4444444443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=4.9e-17 Score=174.02 Aligned_cols=203 Identities=14% Similarity=0.050 Sum_probs=153.9
Q ss_pred ecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHH
Q 002866 152 CLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKL 231 (872)
Q Consensus 152 YLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnL 231 (872)
||=..|=+++|+.|++++.+ ... .+-.+...++++++|+.+.++|+++.+ .++||.++|.|++.
T Consensus 2 ~L~~PGP~~v~~~V~~am~~-----------~~~---~hr~~~f~~i~~~~~~~l~~ll~~~~~--~i~~~gsgT~a~e~ 65 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALAR-----------PQL---HHRTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEA 65 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHS-----------CCC---CTTSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHhcC-----------CCC---CCCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEeCchHHHHHH
Confidence 45455656788999887432 110 112233457899999999999998754 58899999999999
Q ss_pred HHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCcc
Q 002866 232 LAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQS 311 (872)
Q Consensus 232 Vaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vS 311 (872)
++.++ +.+|+++++.. ..+-+- .|.+.+++.|.++..+...+.. .++.+++ ...++++|+++|..
T Consensus 66 ~~~nl-~~~g~~vlv~~-~G~f~~-~~~~~a~~~~~~~~~~~~~~g~-~~~~~~~-----------~~~~~~~v~~~h~e 130 (348)
T d1iuga_ 66 LVKNL-FAPGERVLVPV-YGKFSE-RFYEIALEAGLVVERLDYPYGD-TPRPEDV-----------AKEGYAGLLLVHSE 130 (348)
T ss_dssp HHHHH-CCTTCEEEEEE-CSHHHH-HHHHHHHHTTCEEEEEECCTTC-CCCTTTS-----------CCSSCSEEEEESEE
T ss_pred HHHhc-ccccccceeec-chHHHH-HHHHHHHhcCcccccccccCCC-ccccccc-----------cccCCCeeEEEecc
Confidence 99886 46788865442 222222 4567789999999999887742 2332221 23467899999999
Q ss_pred CcccchhcHHHHH-HHHHC--CcEEEeeccccCCCCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 312 RVTGAKYSYQWMA-LAQQN--HWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 312 NvTG~i~PLe~I~-~Are~--G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+.||+++|++.+. .++++ ...+++||+|+.|. .++|+..+++|+++++.||++++ |.|+|+++++++.++.++|
T Consensus 131 TstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~--~~i~~d~~~iD~~~~~sqK~l~g-ppG~~~v~~s~~~le~~~~ 207 (348)
T d1iuga_ 131 TSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGFVALSPRALERLKP 207 (348)
T ss_dssp TTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEEEEECHHHHHTCCC
T ss_pred hhhhhhccHHHHHHHHHhhhccceeechhhhcccc--cccccccccCCEEEeccccceec-CCceeeeeechHHHhhhcc
Confidence 9999999998654 55655 57899999999997 69999999999999999999977 8999999999998887765
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.52 E-value=1.8e-14 Score=157.15 Aligned_cols=180 Identities=10% Similarity=-0.063 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+.++++++|+++|++ ..+|+.|+|++.|+++-..-.++||+||+.. .+|.|+......+...+..+..++++.
T Consensus 66 ~~i~eae~~~A~~~ga~----~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~-~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD----KTYFVLGGSSNANNTVTSALVSNGDLVLFDR-NNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp THHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHHHCCTTCEEEEET-TCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCchHHHHHHHHHHhcCCCCeEEecc-cchHHHHHHHHHHhcCCceeeeccccc
Confidence 46788999999999994 3788888887777654433358999998874 478888642222333455555555553
Q ss_pred CCC-------ccCHHHHHHHHhhh-hccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 277 PTL-------KLCSTDLRKQISSK-KRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 277 p~g-------~Id~edLe~~I~~~-~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
... .++.+.+++.+... .+.....++.++++.+++|..|.+.|++ +++.||++|+++++|+||.++. ..
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~--~~ 218 (462)
T d1c4ka2 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE--QF 218 (462)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG--GS
T ss_pred ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccc--cc
Confidence 211 22333333322210 0112345788999999999999999998 5577899999999999998775 22
Q ss_pred CCC-------------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 348 LGL-------------SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 348 LDL-------------s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
.+. ...++|++++|+||++|+ |.|.+++.++...+.
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~-~~~g~ll~~~~~~~~ 267 (462)
T d1c4ka2 219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIK 267 (462)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGT
T ss_pred cCcCCcchhhccccccccCCccEEEEecCccccc-ccceEEEEecccccc
Confidence 221 123569999999999997 777777777765543
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=2e-12 Score=143.86 Aligned_cols=230 Identities=11% Similarity=-0.004 Sum_probs=150.7
Q ss_pred hHHHHHhhcccCCCC---ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC
Q 002866 135 KIDQLRANEYLHLSP---KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 135 ~ID~lR~~EFP~L~~---~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg 211 (872)
-++.+++.-.|.... .-|+.|--+++.+..++-.+.. ..+..++ ...-..|.+..+..++=+-++++||
T Consensus 56 ~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~------~~~n~n~--~~~~~sp~~t~iE~~v~~wl~~l~g 127 (476)
T d1js3a_ 56 ILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC------GAIGCIG--FSWAASPACTELETVMMDWLGKMLQ 127 (476)
T ss_dssp HHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH------HHHCCCC--SSGGGCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHH------Hhhcccc--cchhhhhhHHHHHHHHHHHHHHHhC
Confidence 455555433344322 4577776666666655543211 0111111 1112344445677778889999999
Q ss_pred CCCC-------CCcEEEeCCHHHHHHHHHhh-----CC--------CCCC----CeEEEecccCchhHHHHHHHHHHcCc
Q 002866 212 IPEN-------EYGLVFTVSRGSAFKLLAES-----YP--------FHTN----KKLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 212 A~~d-------EY~VVFTsnATeALnLVaes-----lp--------f~~G----d~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
.+.. +-.-+||+|+|+|+-+.... ++ +..+ +-++...+.-|.|+. +.+.-.|+
T Consensus 128 ~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~---ka~~~lGl 204 (476)
T d1js3a_ 128 LPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE---RAGLIGGV 204 (476)
T ss_dssp CCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH---HHHHHHTC
T ss_pred CCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHH---HHHHhcCc
Confidence 8642 22468999999986543321 11 1111 123444455677664 34455699
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
.+..+|++. +++++.++|+++|.+.++ ....+-+|+.++.++.||.+-||+.| ..|+++++++|||||..+.. .
T Consensus 205 ~~~~v~~d~-~~~md~~~L~~~i~~~~~--~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~--~ 279 (476)
T d1js3a_ 205 KLKAIPSDG-KFAMRASALQEALERDKA--AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSA--F 279 (476)
T ss_dssp EEEEECCCT-TSCCCHHHHHHHHHHHHH--TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGG--G
T ss_pred eEEEeccCC-CCCcCHHHHHHHHHHHHh--cCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhh--h
Confidence 999999986 689999999999976532 22345788999999999999999855 57899999999999965543 1
Q ss_pred cCC-CC----C-CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 347 SLG-LS----L-FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 347 pLD-Ls----~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
..+ .. . -.+|.+++++|||++. |.++|++++|+.
T Consensus 280 ~~~~~~~~~~gi~~aDSit~d~HK~l~~-P~~~g~~l~r~~ 319 (476)
T d1js3a_ 280 ICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRR 319 (476)
T ss_dssp GSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCH
T ss_pred hhcchhhhhcCCcccceeeecCcccccc-CCcceeecccch
Confidence 221 11 1 2589999999999988 999999999874
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.41 E-value=7.3e-13 Score=139.09 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..+++..+++|+++|++ .+++|+|+|+|+.+++.++.+++||+|+++ .+.|.++... ....|+++++++++.
T Consensus 31 ~~v~~~E~~la~~~g~~----~ai~~~sgt~Al~~al~al~~~~gdeVi~~-~~~~~~~~~a---i~~~g~~pv~~d~~~ 102 (376)
T d1mdoa_ 31 PKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITP-SMTWVSTLNM---IVLLGANPVMVDVDR 102 (376)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEE-SSSCHHHHHH---HHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHhCCCCCCEEEEe-cccccccccc---hhccccceeeecccc
Confidence 45677889999999984 278899999999999999989999998876 3445555432 345799999999998
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRP 355 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l~~ 355 (872)
+++.+++++|+++|.+ +|++|+++| +.|...|++ +...|+++|+.|+.||||+.|.......+..+++
T Consensus 103 ~~~~~d~~~l~~~i~~--------~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~ 171 (376)
T d1mdoa_ 103 DTLMVTPEHIEAAITP--------QTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGT 171 (376)
T ss_dssp TTCCBCHHHHHHHCCT--------TEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSE
T ss_pred cccCCCHHHHHHhcCC--------CCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccC
Confidence 7888999999988863 588887765 689999997 5568899999999999999884111223344555
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+++|..+|+++. +.| |+++.+..
T Consensus 172 ~~~Sf~~~K~l~~-g~G-G~i~t~~~ 195 (376)
T d1mdoa_ 172 AIFSFHAIKNITC-AEG-GIVVTDNP 195 (376)
T ss_dssp EEEECCTTSSSCS-SSC-EEEEESCH
T ss_pred ccccCCCcCCCCC-CCC-CEEEEech
Confidence 5566666798875 333 66666654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.41 E-value=4.7e-13 Score=144.46 Aligned_cols=172 Identities=8% Similarity=-0.008 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEeCCHHHH-HHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec--
Q 002866 199 EHDIKTRIMDHLNIPENEYGLVFTVSRGSA-FKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF-- 274 (872)
Q Consensus 199 ieeARerIA~lLgA~~dEY~VVFTsnATeA-LnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv-- 274 (872)
..+.-..+++++|.+.. ..++.++|.+ +.++..++. ..+++.||++. ..|.++.. .+.-.|++...++.
T Consensus 115 ~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~-~~H~s~~k---~~~~~g~~~~~v~~~~ 187 (434)
T d2z67a1 115 TNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPY-ASHKSPIK---AVSFVGMNMRLVETVL 187 (434)
T ss_dssp HHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHH---HHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEec-cCCHHHHH---HHHHhCCcceEEEeec
Confidence 34444567888998643 5566555554 334433332 22567777663 35676653 34456888777753
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCC---ccCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDM---DSLGL 350 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~m---ipLDL 350 (872)
+..++.+|.++|+++|.++.. ..++.+|++++.++.+|.+.|++. .+.||++|+++++|+|+.++... .+...
T Consensus 188 ~~~~~~~d~~~l~~~i~~~~~---~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~ 264 (434)
T d2z67a1 188 DGDRVYVPVEDIENAIKKEIE---LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA 264 (434)
T ss_dssp ETTEEECCHHHHHHHHHHHHH---TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHhhhh---cCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc
Confidence 233567999999999976431 225778999999999999999974 56789999999999998654200 11122
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 351 SLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 351 s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
...++|++++|+||+|+. |.|.|++++++.
T Consensus 265 ~~~~~D~~~~s~hK~l~~-~~g~~~~~~~~~ 294 (434)
T d2z67a1 265 FKYRVDAVVSSSDKNLLT-PIGGGLVYSTDA 294 (434)
T ss_dssp HTSCCSEEEEEHHHHHCC-CSSCEEEEESCH
T ss_pred ccCCcceEEEcCcccccc-CCCccccccCcH
Confidence 456899999999999888 899999987753
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=2.5e-13 Score=146.63 Aligned_cols=174 Identities=8% Similarity=-0.043 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhh-C-CCC-CCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAES-Y-PFH-TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaes-l-pf~-~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
+..++-+.+++++|.+... ..+||+++|++..+++.. . .+. +++.||++ ...|.++.. .+.-.|++.+.|+.
T Consensus 95 le~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~-~~~H~s~~~---a~~~~g~~~~~v~~ 169 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFK---SMVTAGFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHH---HHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEc-CcccHHHHH---HHHHcCCeeEEEEe
Confidence 4445667789999997643 688999999765543322 2 122 35567665 345776653 34556888777752
Q ss_pred --cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCC----Ccc
Q 002866 275 --KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD----MDS 347 (872)
Q Consensus 275 --d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~----mip 347 (872)
+..++.+|.++|+++|.... ..++.+|++++.++.+|.+.|++ +.+.|+++|+++++|+|+.++.. ..+
T Consensus 170 ~~~~~~~~id~~~l~~~i~~~~----~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~ 245 (445)
T d3bc8a1 170 VLEGDELRTDLKAVEAKIQELG----PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ 245 (445)
T ss_dssp EEETTEEECCHHHHHHHHHHHC----GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred eccCcccccCHHHHHHHHHhcc----ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccch
Confidence 23468899999999997642 23588999999999999999997 45678999999999999876520 012
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+...-++|++++|+||+|+. |.|.|++++++.
T Consensus 246 ~~~~~~~vd~~~~s~hK~~~~-p~g~~~l~~~~~ 278 (445)
T d3bc8a1 246 QGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFNE 278 (445)
T ss_dssp HHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESCH
T ss_pred hccCcCCcceEEecCcccccc-CCCCceeeeCCh
Confidence 223334699999999999888 999999998864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=6.2e-11 Score=118.30 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=103.9
Q ss_pred CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC
Q 002866 158 FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP 237 (872)
Q Consensus 158 tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp 237 (872)
+++.++.|++|+.+. .......|++ ...++++|+++|+++|++. .|+||+|+|+|++++.....
T Consensus 12 ~~g~~P~v~~A~~~a----------~~~~~~~~~~---~~~~~~l~~~la~~~g~~~---~v~f~~sGt~An~~a~~~~~ 75 (345)
T d1v72a1 12 IAGASPEVAQALVKH----------SSGQAGPYGT---DELTAQVKRKFCEIFERDV---EVFLVPTGTAANALCLSAMT 75 (345)
T ss_dssp GCCCCHHHHHHHHHT----------TSSCCCSTTC---SHHHHHHHHHHHHHHTSCC---EEEEESCHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHH----------hccCccccCC---CHHHHHHHHHHHHHHCCCc---EEEECCchHHHHHHHHHHHH
Confidence 445577898885431 1111122332 2567899999999999853 59999999999998887653
Q ss_pred CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch
Q 002866 238 FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK 317 (872)
Q Consensus 238 f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i 317 (872)
..++.+++... .|.++..........|..+..++..+ .+.++.+.+++.+.........+.+ .++.....+..|..
T Consensus 76 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (345)
T d1v72a1 76 -PPWGNIYCHPA-SHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQP-ACVSITQATEVGSI 151 (345)
T ss_dssp -CTTEEEEECTT-SHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEE-EEEEEESSCTTSCC
T ss_pred -hcCCccccccc-cceeeechhhHHHhcCcccccccccc-cccccHHHhhhhhcccccccccccc-eeeeeecccccccc
Confidence 45556554432 34444333334455677777766554 5678999999888754321122223 34444455556666
Q ss_pred hcHHH----HHHHHHCCcEEEeeccccC
Q 002866 318 YSYQW----MALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 318 ~PLe~----I~~Are~G~~VLVDAAQ~a 341 (872)
.++++ ...++++|+.+++|++|..
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~D~~~~~ 179 (345)
T d1v72a1 152 YTLDEIEAIGDVCKSSSLGLHMDGSRFA 179 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred ccchhhhhHHHHHHhcCceeeecccccc
Confidence 66543 3457999999999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=5.1e-10 Score=117.40 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=129.2
Q ss_pred CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCC
Q 002866 160 LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFH 239 (872)
Q Consensus 160 p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~ 239 (872)
|.|+.+++++.+ .+.....|+.+.. ..+.|+.||++++++++ +|+||+|+|+|+++++..+. .
T Consensus 38 ~~p~~i~~al~~-----------~l~~~~~Y~~~~G---~~elr~aiA~~~~~~~~--~Iiit~G~~~al~~~~~~l~-~ 100 (368)
T d1v2da_ 38 PPPPFLLEAVRR-----------ALGRQDQYAPPAG---LPALREALAEEFAVEPE--SVVVTSGATEALYVLLQSLV-G 100 (368)
T ss_dssp CCCHHHHHHHHH-----------HTTTSCSCCCTTC---CHHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHHC-C
T ss_pred CCCHHHHHHHHH-----------HhhcccCCCCCcC---CHHHHHHHHhhcccCCc--ceeeccchHHHHHHHhhccc-c
Confidence 456777776432 2222234554431 34789999999999887 59999999999999999874 5
Q ss_pred CCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC--CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccch
Q 002866 240 TNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW--PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAK 317 (872)
Q Consensus 240 ~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~--p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i 317 (872)
+|+.|++..- .+.... ..++..|.+++.++++. ....++.+++++++. +.+++++++..+|.||+.
T Consensus 101 ~~d~v~~~~p-~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~~~~p~NPtG~~ 168 (368)
T d1v2da_ 101 PGDEVVVLEP-FFDVYL---PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT--------PRTRALLLNTPMNPTGLV 168 (368)
T ss_dssp TTCEEEEEES-CCTTHH---HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC--------TTEEEEEEESSCTTTCCC
T ss_pred ccccccccCC-cchhhh---hHHHhcCCccceeccccccccccCCHHHHHHhhc--------cCceEEEEcCCCCccccc
Confidence 7888775432 223333 23455688888777642 234578888877664 358899999999999999
Q ss_pred hcHH----HHHHHHHCCcEEEeeccccCCCCCccCCC-----CCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 318 YSYQ----WMALAQQNHWHVLLDAGSLGPKDMDSLGL-----SLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 318 ~PLe----~I~~Are~G~~VLVDAAQ~aG~~mipLDL-----s~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
++.+ +++.|+++++.++.|.+...... .-.. .......++.++-|.+|.+---+|.++..++.++.+
T Consensus 169 ~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~ 244 (368)
T d1v2da_ 169 FGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRL 244 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeeeechhhhhhcc--cccccccccccccccceeecccccccccccccccccccccccchh
Confidence 9964 34567999999999998643221 1111 112244566677776664112377777666665443
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=4.3e-08 Score=102.21 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=107.7
Q ss_pred HHHHHHHh----cCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-
Q 002866 202 IKTRIMDH----LNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW- 276 (872)
Q Consensus 202 ARerIA~l----LgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~- 276 (872)
.|++||++ +|.+.+..+|++|+|+++|+..++.++ .++||+|++.. -.+... ...++..|.++..++.+.
T Consensus 40 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~-P~y~~~---~~~~~~~g~~~~~v~~~~~ 114 (361)
T d1d2fa_ 40 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-SETGEGVVIHT-PAYDAF---YKAIEGNQRTVMPVALEKQ 114 (361)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-SCTTCEEEEEE-SCCHHH---HHHHHHTTCEEEEEECEEC
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc-ccccccccccc-ccccch---hHHHHhhcceEEeeccccc
Confidence 55555554 364332226999999999999999998 47899987652 123333 344556788888877643
Q ss_pred -CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccCCC--CCccCC
Q 002866 277 -PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLGPK--DMDSLG 349 (872)
Q Consensus 277 -p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~aG~--~mipLD 349 (872)
++..++.++++..+.. +++++++++..+|.||..++.+ ++..|+++|+++++|.+...-. +..+.-
T Consensus 115 ~~~~~~d~~~~~~~~~~-------~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~ 187 (361)
T d1d2fa_ 115 ADGWFCDMGKLEAVLAK-------PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP 187 (361)
T ss_dssp SSSEECCHHHHHHHHTS-------TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC
T ss_pred ccccccccccchhhccc-------CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccc
Confidence 2334788888888753 3689999999999999999963 4567899999999998843210 001122
Q ss_pred CCCCC--CcEEEEcccccCCCCCCceEEEEE
Q 002866 350 LSLFR--PDFIITSFYRVFGFDPTGFGCLLI 378 (872)
Q Consensus 350 Ls~l~--~DFlv~S~HK~fG~~PtGvG~LyV 378 (872)
+.... --.+..|+=|.||.+-.++|.+++
T Consensus 188 ~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~ 218 (361)
T d1d2fa_ 188 WSNVARGDWALLTSGSKSFNIPALTGAYGII 218 (361)
T ss_dssp GGGTCCSSEEEEECSHHHHTCGGGCCEEEEE
T ss_pred cccccccccccccccccccccccccceeeec
Confidence 22222 235666777766631123455444
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=98.89 E-value=1e-08 Score=109.07 Aligned_cols=217 Identities=15% Similarity=0.107 Sum_probs=136.0
Q ss_pred hhHHHHHhhcccCCCCceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc--
Q 002866 134 DKIDQLRANEYLHLSPKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL-- 210 (872)
Q Consensus 134 ~~ID~lR~~EFP~L~~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL-- 210 (872)
+...++|++- .+.|-|--|--. +.|+.+++++.+ .+... ...|+.+.. ..+.|+.||+++
T Consensus 20 ~~a~~~~~~g----~~vi~l~~G~p~~~~p~~v~~a~~~-------~~~~~---~~~Y~~~~G---~~~lR~aia~~~~~ 82 (388)
T d1j32a_ 20 AKAKAMKAEG----IDVCSFSAGEPDFNTPKHIVEAAKA-------ALEQG---KTRYGPAAG---EPRLREAIAQKLQR 82 (388)
T ss_dssp HHHHHHHTTT----CCCEECCCSSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CCeEECCCCCCCCCCCHHHHHHHHH-------HHhcC---CCCCCCCCC---CHHHHHHHHHHHHH
Confidence 3455555431 135555433222 346777777432 12111 124654431 235666776654
Q ss_pred --C--CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHH
Q 002866 211 --N--IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTD 285 (872)
Q Consensus 211 --g--A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~ed 285 (872)
| ++++ +|++|+|+++|+.+++.++ ..+||.|++..- .+. .....++..|+++..++.+.. +..++.++
T Consensus 83 ~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vlv~~P-~y~---~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~ 155 (388)
T d1j32a_ 83 DNGLCYGAD--NILVTNGGKQSIFNLMLAM-IEPGDEVIIPAP-FWV---SYPEMVKLAEGTPVILPTTVETQFKVSPEQ 155 (388)
T ss_dssp HHCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEESS-CCT---HHHHHHHHTTCEEEEECCCGGGTTCCCHHH
T ss_pred hcccCCCCc--eEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCC-CcH---HHHHHHHHhcCeEEEEecccccccCCCHHH
Confidence 4 4554 5999999999999999987 478999887532 112 223444557888888876432 23578899
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc-CCCC-CccCCCCCC-----C
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL-GPKD-MDSLGLSLF-----R 354 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~-aG~~-mipLDLs~l-----~ 354 (872)
|++.+. ++++++.++.-+|.||..++.+. +..|+++++++++|-+-. ...+ .....+... .
T Consensus 156 l~~~~~--------~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~ 227 (388)
T d1j32a_ 156 IRQAIT--------PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE 227 (388)
T ss_dssp HHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH
T ss_pred HHHhCC--------CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccccc
Confidence 987764 35889999999999999999863 356789999999999842 1110 011112111 2
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEEeCCCcc
Q 002866 355 PDFIITSFYRVFGFDPTG--FGCLLIKKSVMG 384 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtG--vG~LyVRk~~i~ 384 (872)
-.+++.|+-|.||. .| +|.++..+..++
T Consensus 228 ~~i~~~S~SK~~~~--~GlRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 228 RSVVCSGFAKTYAM--TGWRVGFLAGPVPLVK 257 (388)
T ss_dssp TEEEEEESTTTTTC--TTTCCEEEECCHHHHH
T ss_pred ceeEecCChhhhhc--chhHeEEEEECHHHHH
Confidence 35889999999985 26 798877665544
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=6.1e-09 Score=109.61 Aligned_cols=210 Identities=13% Similarity=0.092 Sum_probs=136.1
Q ss_pred CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEE
Q 002866 149 PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVF 221 (872)
Q Consensus 149 ~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVF 221 (872)
+.|-|-.|--. +.|+.+++++.+ .+... ...|+.+. -..+.|+.||++++ ..+ +..|++
T Consensus 26 dvi~l~~g~p~~~~p~~v~~~~~~-------a~~~~---~~~Y~~~~---G~~~lr~aia~~~~~~~~~~~~~-~~~i~~ 91 (388)
T d1gdea_ 26 DVISLGIGEPDFDTPQHIKEYAKE-------ALDKG---LTHYGPNI---GLLELREAIAEKLKKQNGIEADP-KTEIMV 91 (388)
T ss_dssp TCEECCCCSCCSCCCHHHHHHHHH-------HHHTT---CCSCCCTT---CCHHHHHHHHHHHHHHHCCCCCT-TTSEEE
T ss_pred CeEECCCCCCCCCCCHHHHHHHHH-------HHhcC---ccCCCCCc---CCHHHHHHHHHHHHhhccccCCC-hheeee
Confidence 46666544433 356677776432 12111 12354332 12467888888763 222 236999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+++|+.++...+- .+||.|++..- .+... ...++..|+++..+|.+.. +..++.++|++.+..
T Consensus 92 t~G~~~~l~~~~~~l~-~~gd~vlv~~P-~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------- 158 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFL-KDGEEVLIPTP-AFVSY---APAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-------- 158 (388)
T ss_dssp ESSTTHHHHHHHTTTC-CTTCEEEEEES-CCTTH---HHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT--------
T ss_pred ccCcchHHHHHHHHhc-CCCCEEEECCC-CcHHH---HHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc--------
Confidence 9999999999998874 78999876532 22223 3445667999999998543 236889998877642
Q ss_pred CceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc--C--CCCCcc-CCCCC-CCCcEEEEcccccCCCCC
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL--G--PKDMDS-LGLSL-FRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~--a--G~~mip-LDLs~-l~~DFlv~S~HK~fG~~P 370 (872)
+++++.++.-+|.||..++.+. ++.|++++++|+.|-+-. . +....+ ..+.. .+-.+++.|+-|.||. |
T Consensus 159 ~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~ 237 (388)
T d1gdea_ 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM-T 237 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC-G
T ss_pred CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC-c
Confidence 5889999999999999999753 456799999999999842 1 110001 11111 1235889999999884 3
Q ss_pred -CceEEEEEeCCCcccc
Q 002866 371 -TGFGCLLIKKSVMGSL 386 (872)
Q Consensus 371 -tGvG~LyVRk~~i~~L 386 (872)
--+|.++..++.+..+
T Consensus 238 GlR~G~ii~~~~~~~~~ 254 (388)
T d1gdea_ 238 GWRLGFVAAPSWIIERM 254 (388)
T ss_dssp GGCCEEEECCHHHHHHH
T ss_pred cccEEEEEeeccchhhh
Confidence 2388888777665444
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.86 E-value=3.3e-08 Score=103.89 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.--+.+++++|.. .+++|+|+|.|+.++..++.+++||+|+++. +-+.++.. .....|++++.+.++.
T Consensus 21 ~~~~~fE~~~~~~~~~~----~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~-~t~~a~~~---~~~~~g~~pv~~Di~~ 92 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASS-FTFIASVA---PICYLKAKPVFIDCDE 92 (374)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCGGGTH---HHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCC-cchHhhHH---HHhhccceeEeccccc
Confidence 45667788999999985 2899999999999999999999999987653 33343322 2344699999999985
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCC--
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLF-- 353 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l-- 353 (872)
.. .....+....... .+++|+.+.+.|. .|...+++ +++.|+++|+.|+-||||+.|. ..+=...
T Consensus 93 ~~-~~~~~~~~~~~~~-----~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~---~~~~~~~G~ 160 (374)
T d1o69a_ 93 TY-NIDVDLLKLAIKE-----CEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGS---FYKNKALGT 160 (374)
T ss_dssp TS-SBCHHHHHHHHHH-----CSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTS
T ss_pred cc-ccccccccccchh-----ccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcc---eECCeecCC
Confidence 32 2333333333322 2346777777654 79999997 5678899999999999999885 2222111
Q ss_pred CCcEEEEccc--ccCCCCCCceEEEEEeC
Q 002866 354 RPDFIITSFY--RVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 354 ~~DFlv~S~H--K~fG~~PtGvG~LyVRk 380 (872)
--|+-++||| |.++. -|-|+++.+.
T Consensus 161 ~gd~~~fSf~~~K~l~t--geGG~i~tnn 187 (374)
T d1o69a_ 161 FGEFGVYSYNGNKIITT--SGGGMLIGKN 187 (374)
T ss_dssp SSSEEEEECCTTSSSCC--SSCEEEEESC
T ss_pred CCceEEEeccCcccccc--ccceeehhhh
Confidence 2499999998 65553 1335555443
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.84 E-value=1.8e-09 Score=114.61 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-cCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFD-YESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~D-hEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
..++.|+..++.++..+.+ .++.|+|+++|+..++.++ .+++.++...+ ..|.++.... +-.|+++. +.+
T Consensus 51 ~~~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al--~~~~~vi~~~~~~~~~~~~~~~---~l~g~~~v--~~~- 121 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSC---KIVNAKYF--ESD- 121 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHH---HHTTCEEE--EES-
T ss_pred hHHHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHh--CCCCEEEEecCCCcchhHHHHH---HhcCCeEE--CCC-
Confidence 4567888889999987665 6899999999998888775 46676554333 4577765443 34577653 322
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCc-ccchhcHH-HHHHHHHCCcEEEeeccccCCCC--CccCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRV-TGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKD--MDSLGLSL 352 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNv-TG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~--mipLDLs~ 352 (872)
+.++|+++|. ++|+++.+.+.+|. ++.+.+++ ++..|+++|+++++|.++..+.- ...-....
T Consensus 122 -----d~e~l~~~i~--------~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~ 188 (366)
T d2aeua1 122 -----KVGEILNKID--------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK 188 (366)
T ss_dssp -----CHHHHHTTCC--------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH
T ss_pred -----CHHHHHHhcC--------CCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhh
Confidence 5677766554 46999999887775 55788897 56788999999999999754310 00111124
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
.++|++++|+||.+|+ | ++|+++.++++++.+..
T Consensus 189 ~~~di~~~S~sK~~~g-~-~~G~i~~~~~~i~~~~~ 222 (366)
T d2aeua1 189 LGADLVVTSTDKLMEG-P-RGGLLAGKKELVDKIYI 222 (366)
T ss_dssp HTCSEEEEETTSSSSS-C-SCEEEEEEHHHHHHHHH
T ss_pred cCceEEEecccccccc-c-ceeEEEecHHHHHHHHH
Confidence 5799999999999986 4 68999999998877653
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.84 E-value=2.1e-08 Score=97.69 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...+++|++||+++|++++ .|+||+|+|+|+++++..+. .+++.++.... .|.+..............+...+..
T Consensus 35 ~~~~~lr~~ia~~~g~~~~--~v~~tsggtean~~a~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 109 (340)
T d1svva_ 35 SHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLAL-RPWEAVIATQL-GHISTHETGAIEATGHKVVTAPCPD- 109 (340)
T ss_dssp HHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHHC-CTTEEEEEETT-SHHHHSSTTHHHHTTCCEEEECCTT-
T ss_pred HHHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHHh-hhccccccccc-cceeeeecccccccceeeeeccccc-
Confidence 4668899999999999876 49999999999999888764 45666554432 2333322222222223333332222
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCCCCccCCCCC
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPKDMDSLGLSL 352 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~~mipLDLs~ 352 (872)
.....+....+..... .....+.++.+....|.+|.+.+.+. +..++++|..+++|+++..+. ...+...
T Consensus 110 --~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~--~~~~~~~ 183 (340)
T d1svva_ 110 --GKLRVADIESALHENR--SEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA--LSSPVND 183 (340)
T ss_dssp --SCCCHHHHHHHHHHSC--STTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH--HTSTTCC
T ss_pred --ccccchhHHHHhhhhh--cccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeee--ecccccc
Confidence 2334444444443221 12223445555555556666666542 356688999999999986543 3333333
Q ss_pred C-------CCcEEEEcccccCC
Q 002866 353 F-------RPDFIITSFYRVFG 367 (872)
Q Consensus 353 l-------~~DFlv~S~HK~fG 367 (872)
. ..+....+++|..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~ 205 (340)
T d1svva_ 184 LTLADIARLTDMFYIGATKAGG 205 (340)
T ss_dssp CCHHHHHHHCSEEEEECTTTTC
T ss_pred cccccccccceeeecCCccccc
Confidence 2 24555556666444
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=1.5e-08 Score=107.15 Aligned_cols=206 Identities=12% Similarity=0.111 Sum_probs=133.2
Q ss_pred ceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc------CCCCCCCcEEEe
Q 002866 150 KVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL------NIPENEYGLVFT 222 (872)
Q Consensus 150 ~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL------gA~~dEY~VVFT 222 (872)
.|-|.-|--. +.|+.+++++.+ .+... ...|+.+.. ..+.|+.|++++ +++++ +|++|
T Consensus 33 vi~l~~g~p~~~~p~~i~~a~~~-------~~~~~---~~~Y~~~~G---~~~lR~~ia~~~~~~~~~~~~~~--~i~it 97 (382)
T d1b5pa_ 33 LVALTAGEPDFDTPEHVKEAARR-------ALAQG---KTKYAPPAG---IPELREALAEKFRRENGLSVTPE--ETIVT 97 (382)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHH-------HHHTT---CCSCCCTTC---CHHHHHHHHHHHHHTTCCCCCGG--GEEEE
T ss_pred eEECCCCCCCCCCCHHHHHHHHH-------HHhcC---CcCCCCCCC---CHHHHHHHHhhhhhhcccccccc--cceec
Confidence 5556544433 356777776432 12221 123544321 235777777766 45555 59999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCC
Q 002866 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 223 snATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~ 301 (872)
+|+++|+.+++.++ .++||.|++..-. +. .....++..|+++..+|.+.. +..++.+++++.+. ++
T Consensus 98 ~G~~~al~~~~~~l-~~~gd~vl~~~P~-y~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~ 164 (382)
T d1b5pa_ 98 VGGSQALFNLFQAI-LDPGDEVIVLSPY-WV---SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT--------PR 164 (382)
T ss_dssp SHHHHHHHHHHHHH-CCTTCEEEEEESC-CT---HHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC--------TT
T ss_pred CCHHHHHHHHHHHh-CCCCCEEEECCCC-cH---HHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC--------CC
Confidence 99999999999987 4789998765321 12 223456678999999886432 23567777766553 36
Q ss_pred ceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc----CCCCCccCCCCCCCCcEEEEcccccCCCCCCc-
Q 002866 302 AGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL----GPKDMDSLGLSLFRPDFIITSFYRVFGFDPTG- 372 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~----aG~~mipLDLs~l~~DFlv~S~HK~fG~~PtG- 372 (872)
++++.++.-+|.||..++-+. +..|++++++++.|-+-. -+....++.+. ..--+++.|+=|.|+. | |
T Consensus 165 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~-~-Gl 241 (382)
T d1b5pa_ 165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVA-PEHTLTVNGAAKAFAM-T-GW 241 (382)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTC-TTTEEEEEESTTTTTC-G-GG
T ss_pred CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcC-CCCEEEEecchhhccC-c-Hh
Confidence 888889888999999999863 456799999999998842 12211111111 1234788899999985 3 6
Q ss_pred -eEEEEEeCCCcccc
Q 002866 373 -FGCLLIKKSVMGSL 386 (872)
Q Consensus 373 -vG~LyVRk~~i~~L 386 (872)
+|.++..++.++.+
T Consensus 242 R~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 242 RIGYACGPKEVIKAM 256 (382)
T ss_dssp CCEEEECCHHHHHHH
T ss_pred heEEEEECHHHHHHH
Confidence 89888776655443
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.80 E-value=1.4e-08 Score=108.37 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
.+.+.-+++|+++|+.. +++|+|+|.|+.+++.++.+++||+|+++. +-+.++. ..+...|+++..++++..
T Consensus 35 ~v~~fE~~~a~~~g~~~----~v~~~SGt~Al~lal~~l~~~~gdeVi~p~-~t~~a~~---~ai~~~g~~p~~~d~~~~ 106 (384)
T d1b9ha_ 35 EVNSFEREFAAHHGAAH----ALAVTNGTHALELALQVMGVGPGTEVIVPA-FTFISSS---QAAQRLGAVTVPVDVDAA 106 (384)
T ss_dssp HHHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHTTCCTTCEEEEES-SSCTHHH---HHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHcCCCCCCEEEEec-ccccccc---cccccccccccccccccc
Confidence 35566789999999962 789999999999999999899999988763 2334443 234567999999999877
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccCCCCCC--C
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSLGLSLF--R 354 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l--~ 354 (872)
+..++++++++.+.. +|+.|.+. +..|...+++. ...|+++++.++.|+||+.|. .++=... -
T Consensus 107 ~~~~d~~~~~~~i~~--------~tk~i~~~---~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga---~~~g~~~g~~ 172 (384)
T d1b9ha_ 107 TYNLDPEAVAAAVTP--------RTKVIMPV---HMAGLMADMDALAKISADTGVPLLQDAAHAHGA---RWQGKRVGEL 172 (384)
T ss_dssp TCCBCHHHHHHHCCT--------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC---EETTEEGGGS
T ss_pred ccccchhhhcccccc--------cccccccc---cccccccccccchhhhhhhhhhhhhhhceeccc---ccCCEecCcc
Confidence 888999999887753 58887654 56888899974 567899999999999998885 2321111 2
Q ss_pred CcEEEEcc--cccCCCCCCceEEEEEeC
Q 002866 355 PDFIITSF--YRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 355 ~DFlv~S~--HK~fG~~PtGvG~LyVRk 380 (872)
-|+.++|| .|.++. . +-|+++.+.
T Consensus 173 g~~~~~Sf~~~K~i~~-g-~GG~i~t~~ 198 (384)
T d1b9ha_ 173 DSIATFSFQNGKLMTA-G-EGGAVVFPD 198 (384)
T ss_dssp SSCEEEECCTTSSSCS-S-SCEEEEECT
T ss_pred cccceecccccccccc-c-ccchhhhhh
Confidence 35655555 676653 1 234444444
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=8e-09 Score=108.10 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCe-EEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKK-LLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT 278 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~-ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~ 278 (872)
.+.|++||+++|++++ .|++|+|+++|+.+++..+. .+||. |++. +.... .....++..|+++..++.+. +
T Consensus 59 ~~Lr~~ia~~~gv~pe--~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~-~P~y~---~~~~~~~~~g~~v~~~~~~~-~ 130 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAFC-EPGKDAILYC-PPTYG---MYSVSAETIGVECRTVPTLD-N 130 (354)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHHC-CTTTCEEEEC-SSSCT---HHHHHHHHHTCEEEECCCCT-T
T ss_pred HHHHHHHHHHhCCChH--HeeeccCchHHHHHHHHHhh-cccccccccc-ccccc---cchhhhhccCceeecccccc-c
Confidence 3789999999999987 59999999999999999884 67885 6654 21112 23344566799999888764 5
Q ss_pred CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH---HHHHHCCcEEEe-ecc-ccCCCCCccCCCCCC
Q 002866 279 LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM---ALAQQNHWHVLL-DAG-SLGPKDMDSLGLSLF 353 (872)
Q Consensus 279 g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I---~~Are~G~~VLV-DAA-Q~aG~~mipLDLs~l 353 (872)
..++.++++..+ .+++++.++.-+|.||..++-+.+ ..+.+.+..+++ |+. .+.+....+.-....
T Consensus 131 ~~~d~~~l~~~~---------~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~ 201 (354)
T d1fg7a_ 131 WQLDLQGISDKL---------DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEY 201 (354)
T ss_dssp SCCCHHHHHTSC---------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTC
T ss_pred cccchhhhhhcc---------cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccc
Confidence 678888776433 258999999999999999997533 333344555555 444 233211111122334
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 354 RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.--+++.|+-|.||.+--.+|.++..++.++.+.
T Consensus 202 ~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~ 235 (354)
T d1fg7a_ 202 PHLAILRTLSKAFALAGLRCGFTLANEEVINLLM 235 (354)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHH
T ss_pred ccceEEeCCccccCCCccccccccccchhhhhhh
Confidence 4457778999999841234888888777766553
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.78 E-value=3.5e-08 Score=106.21 Aligned_cols=173 Identities=11% Similarity=0.117 Sum_probs=116.9
Q ss_pred HHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 201 DIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 201 eARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+.|+.||++++ ++++ .|++|+|+|+|+.+++.++- .+||.|++..- .+....... ....|++++.+
T Consensus 87 ~LR~aiA~~l~~~~~~~~~~~~e--~Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P-~y~~~~~~~--~~~~g~~~v~v 160 (428)
T d1iaya_ 87 EFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCLA-DPGDAFLVPSP-YYPAFNRDL--RWRTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHHC-CTTCEEEEESS-CCTTHHHHT--TTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCChh--hEEEcCCHHHHHHHHHHHhC-CCCCEEEEccC-CchHHHHHH--HHhcCCeEEEe
Confidence 68899988863 3455 59999999999999999874 78999887632 233333222 22358999999
Q ss_pred eccCC-CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC----CC
Q 002866 273 WFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG----PK 343 (872)
Q Consensus 273 pvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a----G~ 343 (872)
+.+.. +..++.+++..++.... ...++++++.++.-+|.||..++.+ +++.|++++++|++|.+... +.
T Consensus 161 ~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 238 (428)
T d1iaya_ 161 HCESSNNFKITSKAVKEAYENAQ--KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHH--HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred ecccccccccccccccchhhhhh--ccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc
Confidence 87643 34678888877654322 2356789999999999999999975 34668999999999999542 11
Q ss_pred CCccC----C-----CCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 344 DMDSL----G-----LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 344 ~mipL----D-----Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
...++ + .....--+++.|+-|.|+.+---+|+++..+.
T Consensus 239 ~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~ 285 (428)
T d1iaya_ 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND 285 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred cccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc
Confidence 00000 0 11112237888999988741123888776443
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.71 E-value=3.8e-08 Score=104.13 Aligned_cols=176 Identities=7% Similarity=0.116 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcC------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEe
Q 002866 200 HDIKTRIMDHLN------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAW 273 (872)
Q Consensus 200 eeARerIA~lLg------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vp 273 (872)
.+.|+.||++++ ++++ .|++|+|+++|+.++..++. ++|+.|++..- .+. .....++..|+++..++
T Consensus 74 ~~lR~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~l~-~~gd~v~~~~P-~y~---~~~~~~~~~g~~~~~v~ 146 (403)
T d1wsta1 74 TPLRLALARWMEKRYDIPMSKV--EIMTVAGSQQALDLIGRVFL-NPGDPIVVEAP-TYL---AAIQAFKYYDPEFISIP 146 (403)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTC--EEEEESSHHHHHHHHHHHHC-CTTCEEEEEES-CCH---HHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCChH--HeeecccchHHHHHHHHHHh-hcCCccccCCC-cch---hhhHHHhhccccceeEe
Confidence 367888888753 5555 59999999999999999874 68999876521 122 33344566799999999
Q ss_pred ccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc----CCCCC
Q 002866 274 FKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL----GPKDM 345 (872)
Q Consensus 274 vd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~----aG~~m 345 (872)
.+... .+...+........ ......+.++.++..+|.||..++.+ ++..|+++++++++|-+-. -+...
T Consensus 147 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~ 223 (403)
T d1wsta1 147 LDDKG--MRVDLLEEKLEELR-KQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPT 223 (403)
T ss_dssp EETTE--ECHHHHHHHHHHHH-HTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred ecccC--Cccccccccchhhh-hccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCC
Confidence 87532 22333322221111 11234577888999999999999986 3456799999999998742 12110
Q ss_pred ccC-CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 346 DSL-GLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 346 ipL-DLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.++ .+...+.-.++.|+.|+|++ --.+|.++..+..+..+
T Consensus 224 ~~~~~~~~~~~~i~~~S~SK~~~~-G~RiG~~i~~~~~i~~~ 264 (403)
T d1wsta1 224 PPIKHFDDYGRVIYLGTFSKILAP-GFRIGWVAAHPHLIRKM 264 (403)
T ss_dssp CCGGGGCSSSCEEEEEESTTTTCG-GGCCEEEEECHHHHHHH
T ss_pred CcccccCCCCcEEEEccccceecC-cccccccccchHHHHHH
Confidence 111 12344567899999999863 35688888877665443
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.71 E-value=3.9e-08 Score=106.95 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=117.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. +...++||++-|+.. .+.++++-.|+..+..++ .++||+||+..+.-+....-+....++.|++
T Consensus 55 R~~nPT~----~~LE~~la~LEg~~~----a~~~~SGmaAi~~~l~~l-~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~ 125 (392)
T d1gc0a_ 55 RISNPTL----NLLEARMASLEGGEA----GLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVK 125 (392)
T ss_dssp --CCHHH----HHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCE
T ss_pred CCCChHH----HHHHHHHHHHhCCcc----eeehhhHHHHHHHHHHhh-ccCCCeeecccccchhhhhhhhhhhccCCcc
Confidence 3577753 456678999998742 455788888888888776 3789999887653345454555667888999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.+++.. +.++++++|. ++|+||-+-..+|.+..+.||+ +++.||++|+.++||.+-+-|...-|
T Consensus 126 ~~~~d~~------d~~~~~~ai~--------~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~P 191 (392)
T d1gc0a_ 126 LRHVDMA------DLQALEAAMT--------PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP 191 (392)
T ss_dssp EEEECTT------CHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG
T ss_pred cccCCcc------CHHHHHHhCC--------CCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccCh
Confidence 9987643 5678877775 3699999999999999999998 56788999999999999665531125
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
++ +++|+++-|.-|++++
T Consensus 192 l~---~GaDivihS~TKyi~G 209 (392)
T d1gc0a_ 192 LE---LGADLVVHSATKYLSG 209 (392)
T ss_dssp GG---GTCSEEEEETTTTTTC
T ss_pred HH---hCCCEEEEecceeecC
Confidence 54 5999999999999875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.65 E-value=4.9e-08 Score=105.17 Aligned_cols=175 Identities=12% Similarity=0.136 Sum_probs=118.0
Q ss_pred HHHHHHHHhcC--------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 201 DIKTRIMDHLN--------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 201 eARerIA~lLg--------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
+.|++||++++ ++++ +|++|+|+|+|+.+++..+ ..+||.|++..- .+....... ....|++++.+
T Consensus 88 ~LR~aiA~~l~~~~~~~~~~~pe--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P-~y~~~~~~~--~~~~g~~~v~v 161 (431)
T d1m7ya_ 88 AFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTP-YYPGFDRDL--KWRTGVEIVPI 161 (431)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTHHHHT--TTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCC-CchhHHHHH--HHhcCceeccc
Confidence 68888888764 4454 6999999999999999988 478999886532 122232222 12358999888
Q ss_pred eccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccccC-CCC-C
Q 002866 273 WFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSLG-PKD-M 345 (872)
Q Consensus 273 pvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~a-G~~-m 345 (872)
+++..+ ..++.+.+++.+.... ....+++++.++.-+|.||..++.+ +++.|++++++|++|.+... -.+ .
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 239 (431)
T d1m7ya_ 162 HCTSSNGFQITETALEEAYQEAE--KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 239 (431)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHH--HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred cccchhcccccHHHhhhhhhhhh--hccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC
Confidence 876432 4578888988876532 2345789999999999999999975 34667899999999987431 000 0
Q ss_pred ccCCCCC----C---------CCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 346 DSLGLSL----F---------RPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 346 ipLDLs~----l---------~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
-.+++.. . .-=+++.|+-|.||.+-.-+|+++..++.+
T Consensus 240 ~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i 290 (431)
T d1m7ya_ 240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV 290 (431)
T ss_dssp CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH
T ss_pred CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhh
Confidence 0111100 0 112678899999985112378888766543
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.64 E-value=1.9e-07 Score=102.59 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=127.9
Q ss_pred ceeccc---CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHH
Q 002866 150 KVCLDY---CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDy---AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnAT 226 (872)
.||.|. ..|++++..+..+++ .. ...|+.. ..+.+..+++|+++|.. .++||+++|
T Consensus 42 ~v~iDl~sDs~t~am~~~~~aa~~-------------~G-Dd~Y~~d---pt~~~lE~~~a~l~G~e----~al~~~SGt 100 (456)
T d1c7ga_ 42 DIYIDLLTDSGTNAMSDKQWAGMM-------------IG-DEAYAGS---ENFYHLEKTVKELFGFK----HIVPTHQGR 100 (456)
T ss_dssp GCSEECSCSSSCCCEEHHHHHHTT-------------SC-CCCSSSC---HHHHHHHHHHHHHHCCS----EEEEESSHH
T ss_pred ceeeEcccCCCcccchHHHHHHHh-------------cc-chhccCC---chHHHHHHHHHHHhCCC----eEEECCCHH
Confidence 667775 556666765544321 11 1345532 23456778999999984 279999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc---------CCCCccCHHHHHHHHhhhhccC
Q 002866 227 SAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK---------WPTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 227 eALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd---------~p~g~Id~edLe~~I~~~~rr~ 297 (872)
.|+.++...+ .++|++|+... |-+..... ....|+....+..+ ...+.++.++|+++|....+
T Consensus 101 ~An~~a~~~l-~~~Gd~Vi~~~-~f~~~~~~----i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~-- 172 (456)
T d1c7ga_ 101 GAENLLSQLA-IKPGQYVAGNM-YFTTTRFH----QEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA-- 172 (456)
T ss_dssp HHHHHHHHHH-CCTTEEEEESS-CCHHHHHH----HHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--
T ss_pred HHHHHHHHHh-cCCCCeEecCc-chHHHHHH----HHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCC--
Confidence 9999988887 47898887653 22222221 23357776554332 12356899999999986421
Q ss_pred CCCCceEEEEeCccCcc-cchhcHHH---H-HHHHHCCcEEEeeccccCCCC-------C--ccCCCCC------CCCcE
Q 002866 298 KDSAAGLFVFPVQSRVT-GAKYSYQW---M-ALAQQNHWHVLLDAGSLGPKD-------M--DSLGLSL------FRPDF 357 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvT-G~i~PLe~---I-~~Are~G~~VLVDAAQ~aG~~-------m--ipLDLs~------l~~DF 357 (872)
..+.++++...+|.. |+.+|++. | +.|+++|+.+++|+|++++.. . -..++.. -.+|.
T Consensus 173 --~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~ 250 (456)
T d1c7ga_ 173 --ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADG 250 (456)
T ss_dssp --GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSE
T ss_pred --ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccccccc
Confidence 246788888888865 56666653 3 567999999999999875310 0 0111111 13799
Q ss_pred EEEcccccCCCCCCceEEEEEeCC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+++|+||.++. |.| |+++.++.
T Consensus 251 ~s~s~~K~~~~-~~G-G~i~~~~~ 272 (456)
T d1c7ga_ 251 CTMSGKKDCLV-NIG-GFLCMNDE 272 (456)
T ss_dssp EEEETTTTTCC-SSC-EEEEESCH
T ss_pred EEEeccccccc-cce-eEEEcCCH
Confidence 99999999887 544 66665553
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=4.4e-08 Score=104.55 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=117.8
Q ss_pred HHHHHHHHHhc----C---CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEE
Q 002866 200 HDIKTRIMDHL----N---IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSA 272 (872)
Q Consensus 200 eeARerIA~lL----g---A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~V 272 (872)
.+.|+.||+++ | ++++ .|++|+|+++|+.+++..+- .+||.|++..- .+. .....++..|+++..+
T Consensus 83 ~~LR~aia~~~~~~~g~~~~~~~--~I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P-~y~---~~~~~~~~~g~~~~~~ 155 (420)
T d1vp4a_ 83 PVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLFL-DDESYCVLDDP-AYL---GAINAFRQYLANFVVV 155 (420)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHHC-CTTCEEEEEES-CCH---HHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCHH--HeEeccchhhhHHHHHHhhh-ccccccccccc-ccc---chhHHHHHHhhhcccc
Confidence 35777777765 3 4454 69999999999999999873 68999887532 122 3344566789999999
Q ss_pred eccCCCCccCHHHHHHHHhhhhcc-CCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-C---CC
Q 002866 273 WFKWPTLKLCSTDLRKQISSKKRR-KKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-G---PK 343 (872)
Q Consensus 273 pvd~p~g~Id~edLe~~I~~~~rr-~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-a---G~ 343 (872)
|.+.. .++.+.+...+....+. .....+.++.++.-+|.||+.++.+ ++..|+++++++++|.+-. . +.
T Consensus 156 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~ 233 (420)
T d1vp4a_ 156 PLEDD--GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE 233 (420)
T ss_dssp EEETT--EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC
T ss_pred ccccc--ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc
Confidence 98753 46777776655432211 1223467888899999999999985 3466799999999999832 1 11
Q ss_pred CCcc-CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 344 DMDS-LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 344 ~mip-LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
...+ ......+.-.+..|+-|+++. --.+|.++..++.++.+
T Consensus 234 ~~~~~~~~~~~~~~i~~~s~sk~~~~-G~RiG~~~~~~~~i~~l 276 (420)
T d1vp4a_ 234 TVDPIFKIGGPERVVLLNTFSKVLAP-GLRIGMVAGSKEFIRKI 276 (420)
T ss_dssp CCCCHHHHHCTTTEEEEEESTTTTCG-GGCEEEEECCHHHHHHH
T ss_pred ccccccccccccceeEEecccccccc-ccccccccccchhhhhh
Confidence 0000 111123445677788887663 24588888777665544
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.60 E-value=3.5e-07 Score=99.49 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=116.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. ...-++||.+-|+.. -+.++++..|+..+..++ .++||+||+..+.-......+...+++.|++
T Consensus 59 R~~nPT~----~~LE~~la~LEgg~~----a~~~sSGmaAi~~~l~~l-l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~ 129 (397)
T d1y4ia1 59 RLGNPTT----DALEKKLAVLERGEA----GLATASGISAITTTLLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGIN 129 (397)
T ss_dssp TTSCHHH----HHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCE
T ss_pred CCCCHHH----HHHHHHHHHHhCCcc----ceeehHHHHHHHHHHhhc-cCCCCeeeeecccccccchhhhcccCCCceE
Confidence 3467753 456678888888742 455678888888877666 3789999887553333334444567888999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.++... +.+.++++|. ++|+||-+-..+|.+..+.||+ +++.||++|+.++||.+-+.|...-|
T Consensus 130 ~~~vd~~------d~~~~~~~i~--------~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~P 195 (397)
T d1y4ia1 130 VRFVDAG------KPEEIRAAMR--------PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP 195 (397)
T ss_dssp EEEECTT------SHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG
T ss_pred eeccCCC------CHHHHHHhcC--------CCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcc
Confidence 9987642 4678887774 3699999999999999999998 56788999999999999666642234
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
+ ++++|.++-|.-|++|+
T Consensus 196 l---~~GaDivihS~TKyi~G 213 (397)
T d1y4ia1 196 L---QLGADIVVHSVTKYING 213 (397)
T ss_dssp G---GGTCSEEEEETTTTTTC
T ss_pred h---hcCCCEEEEehhhhcCC
Confidence 4 45899999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=3.8e-07 Score=94.63 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=130.1
Q ss_pred CceecccCC-CCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC---CCCCCcEEEeCC
Q 002866 149 PKVCLDYCG-FGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI---PENEYGLVFTVS 224 (872)
Q Consensus 149 ~~IYLDyAA-tgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA---~~dEY~VVFTsn 224 (872)
+.|||+-+- --|+|..+++++.+ .+.... ...|.++. ..+.|++||++++. +++ +|++|+|
T Consensus 20 d~~~l~~~enp~~~p~~i~~~~~~-------~~~~~~--~~~yp~~g----~~~Lr~aia~~~~~~~v~~d--~I~it~G 84 (334)
T d2f8ja1 20 DKTYLALNENPFPFPEDLVDEVFR-------RLNSDA--LRIYYDSP----DEELIEKILSYLDTDFLSKN--NVSVGNG 84 (334)
T ss_dssp CSEECSSCCCSSCCCHHHHHHHHH-------HCCTTG--GGSCCCSS----CHHHHHHHHHHHTCSSCCGG--GEEEEEH
T ss_pred CceEEECCCCCCCCCHHHHHHHHH-------Hhhcch--hcCCCCCC----cHHHHHHHHHHhcccCCCcc--eEEecCc
Confidence 389998663 23566777776533 111110 11232222 24799999999874 454 5999999
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 225 RGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 225 ATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
+++|+.+++.. +|++++.. ++.......++..|+++..+|++.+ +.... ....++++
T Consensus 85 ~~~~l~~l~~~-----~d~v~i~~----P~y~~~~~~~~~~g~~~v~v~~~~~-~~~~~-------------~~~~~~~~ 141 (334)
T d2f8ja1 85 ADEIIYVMMLM-----FDRSVFFP----PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPE-------------VNVGEGDV 141 (334)
T ss_dssp HHHHHHHHHHH-----SSEEEECS----SCCHHHHHHHHHHTCCEEECCCCTT-SCCCC-------------CCCCTTEE
T ss_pred chhHHHHHhhh-----cccccccc----ccccccccchhccCCcccccccccc-ccccc-------------cccccceE
Confidence 99999998865 47877642 1222334455667999999998753 32210 12246889
Q ss_pred EEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCC-CCCccCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCC
Q 002866 305 FVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGP-KDMDSLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSV 382 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG-~~mipLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~ 382 (872)
+.++.-+|.||..++.+.+..++++++++++|-+..-. ...........+.-+++.|+-|.||. | -.+|.++..+.+
T Consensus 142 l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~~~~~~~~ 220 (334)
T d2f8ja1 142 VFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSL-AAQRVGYVVASEKF 220 (334)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSC-TTTCEEEEEECHHH
T ss_pred EEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccccCceEEEEecCccccch-hhhhhhhcccchHH
Confidence 99999999999999998888888889999998763221 10011112223344788999999885 3 358999887776
Q ss_pred ccccc
Q 002866 383 MGSLQ 387 (872)
Q Consensus 383 i~~L~ 387 (872)
+..+.
T Consensus 221 i~~l~ 225 (334)
T d2f8ja1 221 IDAYN 225 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.59 E-value=1.6e-07 Score=99.86 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=114.6
Q ss_pred HHHHHHHHHhcC------------CCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCc
Q 002866 200 HDIKTRIMDHLN------------IPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGA 267 (872)
Q Consensus 200 eeARerIA~lLg------------A~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGa 267 (872)
.+.|+.||++++ ++++ +|++|+|+++|+.+++.++ .++||.|++..-. +. .....++..|+
T Consensus 75 ~~LReaia~~~~~~~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~~Gd~Vlv~~P~-y~---~~~~~~~~~G~ 147 (412)
T d1bw0a_ 75 PEAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPG-FP---HYETVCKAYGI 147 (412)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESC-CT---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcccccCCCCCCC--eEEEecccccchhhhhhhh-hccccceeeeecc-ch---hhhhhhhccCc
Confidence 368888888762 4554 5999999999999999987 4789998765311 12 23345667899
Q ss_pred EEEEEeccCCC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-C
Q 002866 268 KVYSAWFKWPT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-G 341 (872)
Q Consensus 268 eV~~Vpvd~p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-a 341 (872)
+++.+|.+..+ ...+.+++++.+. ++++++.++.-+|.||+.++.+ ++..|++++++|+.|.+-. .
T Consensus 148 ~~~~v~~~~~~~~~~~~~~l~~~~~--------~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~ 219 (412)
T d1bw0a_ 148 GMHFYNCRPENDWEADLDEIRRLKD--------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGM 219 (412)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC
T ss_pred cccccccccccccchhhHHHHhhhh--------ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHh
Confidence 99999986432 3456777766543 3689999999999999999986 3456789999999998832 1
Q ss_pred ---CCCCc-----cCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCc
Q 002866 342 ---PKDMD-----SLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVM 383 (872)
Q Consensus 342 ---G~~mi-----pLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i 383 (872)
+.... ..++.....=++..|+-|.||.+---+|.+++.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 220 VFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp BCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred ccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 11000 1111112223566788898874223378888776543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.6e-06 Score=91.71 Aligned_cols=168 Identities=14% Similarity=0.070 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
...++..+.+|+++|.. .+++++++++|...++..+. .+++.|++.. ..|.++.. -++..++++...+.
T Consensus 90 ~~~~~lE~~lA~~~g~e----~al~~~SG~~An~~~i~~l~-~~~d~i~~d~-~~h~s~~~---G~~~~~a~~~~~~~-- 158 (401)
T d1fc4a_ 90 DSHKELEQKLAAFLGME----DAILYSSCFDANGGLFETLL-GAEDAIISDA-LNHASIID---GVRLCKAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHTTHHHHC-CTTCEEEEET-TCCHHHHH---HHHTSCSEEEEECT--
T ss_pred HHHHHHHHHHHHhhcCC----ceEEecchhhhhHHHHHHhc-CCCcEEEeCC-cchHHHHc---cccccCceEEEEcC--
Confidence 56778899999999984 38899999999888887764 5677777664 45666643 34456777776542
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH-HHHHHCCcEEEeeccccCCCCCcc--------
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM-ALAQQNHWHVLLDAGSLGPKDMDS-------- 347 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I-~~Are~G~~VLVDAAQ~aG~~mip-------- 347 (872)
.+.+++++++...+. ....+.++++..+.++.|.+.|+.++ .+++++|+.+++|.+|..|. +-
T Consensus 159 ----~d~~~le~~~~~~~~--~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~--~g~~G~G~~~ 230 (401)
T d1fc4a_ 159 ----NDMQELEARLKEARE--AGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF--VGENGRGSHE 230 (401)
T ss_dssp ----TCHHHHHHHHHHHHH--TTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTT--SSTTSCCHHH
T ss_pred ----CChHHHHHHHHHhhh--cccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhcccc--ccCCCCccch
Confidence 367788777654322 23467899999999999999999865 57799999999999998764 11
Q ss_pred -CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 348 -LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 348 -LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+++. -.+|++++++.|-||+ + +-|++..+++.++.+
T Consensus 231 ~~~~~-~~~dii~~tl~Ka~gg-~-~Gg~v~g~~~~~~~l 267 (401)
T d1fc4a_ 231 YCDVM-GRVDIITGTLGKALGG-A-SGGYTAARKEVVEWL 267 (401)
T ss_dssp HTTCT-TCCSEEEEESSSTTCS-S-SCEEEEECHHHHHHH
T ss_pred hccCC-CCCeEEEeeccccccc-C-CcccccCCHHHHHHH
Confidence 2221 2589999999999875 3 245555555554433
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=98.56 E-value=8.2e-07 Score=92.27 Aligned_cols=165 Identities=8% Similarity=0.120 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC
Q 002866 200 HDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL 279 (872)
Q Consensus 200 eeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g 279 (872)
.+.|+.||+++|++++ .|++|+|+++++.++...+. +++.++....+ ... .......|+++..+|++..++
T Consensus 60 ~~Lr~aia~~~~v~~~--~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~--~~~---~~~~~~~~~~~~~v~~~~~~~ 130 (355)
T d1lc5a_ 60 FHLHQALARHHQVPAS--WILAGNGETESIFTVASGLK--PRRAMIVTPGF--AEY---GRALAQSGCEIRRWSLREADG 130 (355)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHHC--CSEEEEEESCC--THH---HHHHHHTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHhCCCHH--HEEecccHHHHHHHHHhhhc--cccccccCCcc--cee---ccccccccccceeeeeeccCC
Confidence 4789999999999876 59999999999998887653 33334433222 222 223344688999999865443
Q ss_pred ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc--CCCCCccCC-CCC
Q 002866 280 KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL--GPKDMDSLG-LSL 352 (872)
Q Consensus 280 ~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~--aG~~mipLD-Ls~ 352 (872)
....+.+.+.+ .++++++.++.-+|.||..++.+ +++.|+++++++++|-+.. ++....... ...
T Consensus 131 ~~~~~~~~~~~--------~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~ 202 (355)
T d1lc5a_ 131 WQLTDAILEAL--------TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD 202 (355)
T ss_dssp TCCCTTHHHHC--------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT
T ss_pred ccceeeeeecc--------ccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccc
Confidence 33333344333 34688999988899999999975 3456789999999998853 322100111 122
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 353 FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 353 l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.+-.+++.|+-|.||.+-.-+|.++...+
T Consensus 203 ~~~~i~~~S~SK~~~l~GlR~G~~i~~~~ 231 (355)
T d1lc5a_ 203 NPHIWVLRSLTKFYAIPGLRLGYLVNSDD 231 (355)
T ss_dssp CTTEEEEEESTTTTTCTTTCCEEEECCCH
T ss_pred cccceeecccccccccccccccceeccch
Confidence 23458999999999852223788876554
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.54 E-value=6.7e-07 Score=95.02 Aligned_cols=202 Identities=16% Similarity=0.116 Sum_probs=127.5
Q ss_pred ceecccCCC----CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc----CCCCCCCcEEE
Q 002866 150 KVCLDYCGF----GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL----NIPENEYGLVF 221 (872)
Q Consensus 150 ~IYLDyAAt----gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL----gA~~dEY~VVF 221 (872)
.|.|.-|-- -+.|+.+++++.+ .+ .. ....|+.+.. ..+.|+.||+++ |.+.+...|++
T Consensus 32 vi~l~~G~P~~~df~~p~~i~~a~~~-------a~-~~--~~~~Y~~~~G---~~~LR~aia~~~~~~~g~~~~~~~i~i 98 (395)
T d1xi9a_ 32 VIRLNIGDPVKFDFQPPEHMKEAYCK-------AI-KE--GHNYYGDSEG---LPELRKAIVEREKRKNGVDITPDDVRV 98 (395)
T ss_dssp CEECCCCCGGGTTCCCCHHHHHHHHH-------HH-HT--TCCSCCCTTC---CHHHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred eEECCCCCCCCCCCCCCHHHHHHHHH-------HH-hc--CCCCCCCCCC---CHHHHHHHHHhhhhccccccccccccc
Confidence 677765421 1356677776432 12 11 1123554431 235677776665 44333336999
Q ss_pred eCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCCC
Q 002866 222 TVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDS 300 (872)
Q Consensus 222 TsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~ 300 (872)
|+|+++++.++...+. .+|+.|++..- +.......++..|++++.++... .+..++.+++.+.+. +
T Consensus 99 ~~G~~~~~~~~~~~~~-~~Gd~vlv~~P----~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~--------~ 165 (395)
T d1xi9a_ 99 TAAVTEALQLIFGALL-DPGDEILVPGP----SYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT--------D 165 (395)
T ss_dssp ESHHHHHHHHHHHHHC-CTTCEEEEEES----CCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC--------T
T ss_pred ccccchhhhhhhhhhc-CCCCEEEEcCC----ccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc--------c
Confidence 9999999999998874 68999876521 22233445667899998887543 234578888877664 2
Q ss_pred CceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccC----CCCCccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLG----PKDMDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~a----G~~mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+++++.++.-+|.||+.++.+. +..|++++++++.|.+-.- +....+..+....-=+++.|+-|.|+. | |
T Consensus 166 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~-~-G 243 (395)
T d1xi9a_ 166 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFA-T-G 243 (395)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCC-G-G
T ss_pred cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhccc-c-h
Confidence 5889999999999999999863 4567899999999998421 110011111111112677789998884 2 6
Q ss_pred --eEEEEEe
Q 002866 373 --FGCLLIK 379 (872)
Q Consensus 373 --vG~LyVR 379 (872)
+|.+++.
T Consensus 244 lRvG~~~~~ 252 (395)
T d1xi9a_ 244 WRLGYMYFV 252 (395)
T ss_dssp GCCEEEEEE
T ss_pred hhcEeeEec
Confidence 6776643
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.7e-06 Score=92.51 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+...++-++||+++|.+ ..+++++++.|...++..+. ++++.|+... ..|.++.. -++..+++++..+-
T Consensus 83 ~~~~~lE~~LA~~~g~e----~al~~~SG~~an~~~i~al~-~~~d~v~~d~-~~h~si~~---g~~~~~~~~~~~~h-- 151 (383)
T d1bs0a_ 83 VVHQALEEELAEWLGYS----RALLFISGFAANQAVIAAMM-AKEDRIAADR-LSHASLLE---AASLSPSQLRRFAH-- 151 (383)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHHC-CTTCEEEEET-TCCHHHHH---HHHTSSSEEEEECT--
T ss_pred hHHHHHHHHHHHhcCCC----ceEEecccchhhHHHHHhhc-CCCceEEeec-cccHHHhh---ccccCCCcceEecc--
Confidence 56778889999999974 37788888999888888875 5777777664 45666643 34456777765542
Q ss_pred CCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCccC------C
Q 002866 277 PTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDSL------G 349 (872)
Q Consensus 277 p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mipL------D 349 (872)
.+.+++++.+... .+++.+|++..+.+++|.+.|+++ +++++++|+.++||-||..|. +.- +
T Consensus 152 ----nd~~~le~~l~~~-----~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv--~G~~g~G~~~ 220 (383)
T d1bs0a_ 152 ----NDVTHLARLLASP-----CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV--IGEQGRGSCW 220 (383)
T ss_dssp ----TCHHHHHHHHHSC-----CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SSGGGCCHHH
T ss_pred ----hHHHHHHHHhccc-----CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeee--cCCcccchHH
Confidence 3688998888642 346789999999999999999985 577899999999999998773 211 2
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.-...+|++++++=|-||. ..|++.......+.|+
T Consensus 221 ~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~ 255 (383)
T d1bs0a_ 221 LQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLL 255 (383)
T ss_dssp HTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHH
T ss_pred HcCCccccccccccccccc---cccccccchhHHHHHH
Confidence 2235678888888898885 3445555555555554
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=6e-07 Score=94.47 Aligned_cols=148 Identities=14% Similarity=0.016 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCC--eEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNK--KLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd--~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
..+++--+++++++|+.. +|+|+|+|.|+.+++.++..+.|+ +|+++. +...++.. .....|++++.+++
T Consensus 31 ~~v~~fE~~~~~~~g~k~----ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~-~t~~a~~~---ai~~~G~~pv~vDi 102 (371)
T d2fnua1 31 KRSLLFEEALCEFLGVKH----ALVFNSATSALLTLYRNFSEFSADRNEIITTP-ISFVATAN---MLLESGYTPVFAGI 102 (371)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHSSCCCTTSCEEEECS-SSCTHHHH---HHHHTTCEEEECCB
T ss_pred HHHHHHHHHHHHHHCcCe----EEEEecHHHHHHHHHHHhcccCCCCCeeeccc-ccccccce---eeeccCcccccccc
Confidence 356667788999999952 789999999999999998776655 677653 33344432 23457999999999
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCC--
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLS-- 351 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs-- 351 (872)
+..+ .++.+++++++ +++|+.|.++| ..|...+++ +...|+++|+.++-||||+.|. ..+=.
T Consensus 103 ~~~~-~~~~~~~~~~~--------~~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga---~~~~~~~ 167 (371)
T d2fnua1 103 KNDG-NIDELALEKLI--------NERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGS---EYQNKKV 167 (371)
T ss_dssp CTTS-SBCGGGSGGGC--------CTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC---EETTEET
T ss_pred cccc-cccchhhhhhc--------cchhhcccccc---ccccccccccccccccccchhhccchhhccCc---eeccccC
Confidence 8754 45556554433 45688887775 679999997 4567899999999999999985 22211
Q ss_pred CCCCcEEEEcc--cccCC
Q 002866 352 LFRPDFIITSF--YRVFG 367 (872)
Q Consensus 352 ~l~~DFlv~S~--HK~fG 367 (872)
-..-|+.++|| .|.+.
T Consensus 168 G~~g~~~~~Sf~~~K~l~ 185 (371)
T d2fnua1 168 GGFALASVFSFHAIKPIT 185 (371)
T ss_dssp TSSSSEEEEECCTTSSSC
T ss_pred Cccccccccccccccccc
Confidence 12346666666 45544
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=98.43 E-value=1.1e-06 Score=93.05 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=129.1
Q ss_pred hhHHHHHhhcccCCC-CceecccCCCC-CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhc-
Q 002866 134 DKIDQLRANEYLHLS-PKVCLDYCGFG-LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHL- 210 (872)
Q Consensus 134 ~~ID~lR~~EFP~L~-~~IYLDyAAtg-p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lL- 210 (872)
.++|.+.. +.+... +.+-|--|-.- |.|+.+++++.+ .+... ...|..+. .+.|+.||+++
T Consensus 17 ~k~~~~~~-~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~-------~~~~~---~~~Y~~g~-----~~Lr~aia~~~~ 80 (394)
T d1c7na_ 17 LKWDLMYS-QNPEVGNEVVPLSVADMEFKNPPELIEGLKK-------YLDET---VLGYTGPT-----EEYKKTVKKWMK 80 (394)
T ss_dssp HHHHHHHH-HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHH-------HHHHC---CCSSBCCC-----HHHHHHHHHHHH
T ss_pred HHHHHHHH-HhHhcCCCeEEccCCCCCCCCCHHHHHHHHH-------HHhCC---CcCCCCCC-----HHHHHHHHHHHH
Confidence 35666664 344432 24555222111 457888887533 22221 12243222 25677777776
Q ss_pred ---CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC--CccCHHH
Q 002866 211 ---NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT--LKLCSTD 285 (872)
Q Consensus 211 ---gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~--g~Id~ed 285 (872)
|.+.+..+|+.|+|+++|+.+++.++ .++|+.+++..- .+. ......+..|.+...++....+ ..++.+.
T Consensus 81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~-~~pgd~vi~~~p-~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~ 155 (394)
T d1c7na_ 81 DRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITP-VYY---PFFMAIKNQERKIIECELLEKDGYYTIDFQK 155 (394)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEECSS-CCT---HHHHHHHTTTCEEEECCCEEETTEEECCHHH
T ss_pred HhcCCCCCCcceEeeccchhhhhhhhccc-cccccccccccC-ccc---chhhHHhhhhhcccccccccccccccchhhh
Confidence 54333336999999999999999887 478999887532 122 2233445567777666543222 2356677
Q ss_pred HHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc--C--CCCCcc--C-CCCCCC
Q 002866 286 LRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL--G--PKDMDS--L-GLSLFR 354 (872)
Q Consensus 286 Le~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~--a--G~~mip--L-DLs~l~ 354 (872)
++.++. +++|+++.++.-+|.||++++.+. +..|++++++|+.|-+-. + +....+ . ......
T Consensus 156 ~~~~~~-------~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T d1c7na_ 156 LEKLSK-------DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLAD 228 (394)
T ss_dssp HHHHHT-------CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT
T ss_pred hhhhhc-------cccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhccccc
Confidence 766654 236899999999999999999863 456789999999998732 1 110000 0 001123
Q ss_pred CcEEEEcccccCCCCCCceEEEEEe
Q 002866 355 PDFIITSFYRVFGFDPTGFGCLLIK 379 (872)
Q Consensus 355 ~DFlv~S~HK~fG~~PtGvG~LyVR 379 (872)
.-+++.|+=|.||.+...+|.+++.
T Consensus 229 ~~i~~~s~SK~~~~~G~R~g~~~~~ 253 (394)
T d1c7na_ 229 KTITFTAPSKTFNIAGMGMSNIIIK 253 (394)
T ss_dssp TEEEEECSHHHHTCGGGCCEEEECC
T ss_pred ceeeccccccccccccccccccccc
Confidence 4577788999887422234445443
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=1.1e-06 Score=92.14 Aligned_cols=166 Identities=13% Similarity=0.117 Sum_probs=105.9
Q ss_pred HHHHHHHHHhc----CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 200 HDIKTRIMDHL----NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 200 eeARerIA~lL----gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
.+.|+.||+++ |++-+..+|++|+|+++++.++...+. .+|+.|++..-. .. .....++..|+.+..++.+
T Consensus 67 ~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~-~~gd~V~i~~P~-y~---~~~~~~~~~g~~~~~~~~~ 141 (389)
T d2gb3a1 67 WELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVLEPF-YA---NYNAFAKIAGVKLIPVTRR 141 (389)
T ss_dssp HHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESC-CT---HHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc-cCCCeEEEeCCC-Cc---cccccccccCccccccccc
Confidence 35677777665 543222369999999999999998874 688988765321 12 2233456678999988887
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-CCCC--CccC
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-GPKD--MDSL 348 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-aG~~--mipL 348 (872)
........+.+... ..++++++.++.-+|.||+.++.+ +++.|++++++++.|-+-. ...+ +.+.
T Consensus 142 ~~~~~~~~~~~~~~--------~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~ 213 (389)
T d2gb3a1 142 MEEGFAIPQNLESF--------INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA 213 (389)
T ss_dssp GGGTSCCCTTGGGG--------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG
T ss_pred cccccchhhhhhhh--------cccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccc
Confidence 64444443333222 234689999999999999999975 3467799999999998732 2111 0001
Q ss_pred CCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC
Q 002866 349 GLSLFRPDFIITSFYRVFGFDPTG--FGCLLIKK 380 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~~PtG--vG~LyVRk 380 (872)
-.....-.+++.|+-|.++. | | +|.++..+
T Consensus 214 ~~~~~~~~~v~~s~sK~~~~-~-GlRiG~~~~~~ 245 (389)
T d2gb3a1 214 LSIESDKVVVIDSVSKKFSA-C-GARVGCLITRN 245 (389)
T ss_dssp GGSCCTTEEEEEESTTTTTC-G-GGCCEEEECSC
T ss_pred cccccccccccccccccccC-c-ccceeeeeccc
Confidence 01112345667777777664 2 4 56655433
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=1.8e-06 Score=93.25 Aligned_cols=152 Identities=12% Similarity=0.103 Sum_probs=110.8
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGa 267 (872)
.++||.. +..-++||.+=|+. +.++|.+ +-.|+..+... .++|++||...+. +..... +.....+.|+
T Consensus 45 R~~nPt~----~~le~~la~LE~~~---~a~~fsS-GMaAisall~l--l~~Gd~vv~~~~~-Yg~t~~l~~~~~~~~gi 113 (380)
T d1ibja_ 45 RSGNPTR----DALESLLAKLDKAD---RAFCFTS-GMAALSAVTHL--IKNGEEIVAGDDV-YGGSDRLLSQVVPRSGV 113 (380)
T ss_dssp TTCCHHH----HHHHHHHHHHHTCS---EEEEESS-HHHHHHHHHTT--SCTTCEEEEESSC-CHHHHHHHHHTSGGGTC
T ss_pred CCCChHH----HHHHHHHHHHcCCc---eEEehhh-HHHHHHHHHHh--hCCCCEEEEEecc-cccccchhhhhhccccc
Confidence 4577763 45667889998874 2455544 45778766542 4689999877543 334433 3455667899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCc
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mi 346 (872)
++.++... +.++++++|. ++|++|-+-..+|.+..+.||+. .+.||++|+.++||.+-+.|...-
T Consensus 114 ~~~~~d~~------~~~~~~~ai~--------~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~ 179 (380)
T d1ibja_ 114 VVKRVNTT------KLDEVAAAIG--------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 179 (380)
T ss_dssp EEEEECTT------SHHHHHHHCC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCC
T ss_pred cccccCcc------hHHHHHHHhc--------cCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccccc
Confidence 99887542 4577776664 36999999999999999999985 567899999999999966564223
Q ss_pred cCCCCCCCCcEEEEcccccCCC
Q 002866 347 SLGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~ 368 (872)
|+ ++++|+++-|.-|++++
T Consensus 180 Pl---~~GaDiVvhS~TKyi~G 198 (380)
T d1ibja_ 180 PL---ELGADIVMHSATKFIAG 198 (380)
T ss_dssp GG---GTTCSEEEEETTTTTTC
T ss_pred cc---ccCCCEEEecccceecc
Confidence 44 46899999999999886
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.6e-07 Score=96.18 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=113.4
Q ss_pred HHHHHHHHhc----CCCCC-CCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 201 DIKTRIMDHL----NIPEN-EYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 201 eARerIA~lL----gA~~d-EY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
+.|+.||+++ |.+-+ +..|++|+|+++||.+++..+ ..+|+.+++..- ..+.. ...+...|++++.++.+
T Consensus 68 ~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-~~~g~~vlv~~p-~~~~y---~~~~~~~g~~~v~~~~~ 142 (418)
T d1w7la_ 68 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEP-FFDCY---EPMTMMAGGRPVFVSLK 142 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEES-CCTTH---HHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh-ccCCceeecccc-ccchh---HHHHHHcCCEeeccccc
Confidence 4666666664 65532 126999999999999999987 478999876522 12222 23455678888877754
Q ss_pred CC-----------CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecccc
Q 002866 276 WP-----------TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSL 340 (872)
Q Consensus 276 ~p-----------~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~ 340 (872)
.. +..++..++... ..++++++.++.-+|.||..++.+. ++.|++++++++.|.+-.
T Consensus 143 ~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~ 214 (418)
T d1w7la_ 143 PGPIQNGELGSSSNWQLDPMELAGK--------FTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ 214 (418)
T ss_dssp ECC---CCSEEGGGEECCHHHHHHH--------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cccccccccccccCcccchhhhhcc--------ccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 21 122344434332 2346899999999999999999863 456789999999999842
Q ss_pred -C---CCCCcc-CCCCCC-CCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 341 -G---PKDMDS-LGLSLF-RPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 341 -a---G~~mip-LDLs~l-~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
. +....+ ..+... .--+++.|+-|.|+.+-..+|.++..++.+..+.
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~ 267 (418)
T d1w7la_ 215 WMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR 267 (418)
T ss_dssp TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHH
T ss_pred HhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhc
Confidence 1 110011 122222 2358899999988752256899988776665543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=3.4e-06 Score=91.10 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=115.4
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. +...++||++=|+. ..+.++++-.|+..+..++ .++|++|+...+.-.....-+...+++.|++
T Consensus 46 R~~nPt~----~~le~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~ 116 (384)
T d1cs1a_ 46 RRGNPTR----DVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR 116 (384)
T ss_dssp TTCCHHH----HHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred CCCCHHH----HHHHHHHHHHhCCC----ceEEecChHHHHHHHHhhc-ccccceecccccccchhhhhhhhhhcccccc
Confidence 4577763 46677899998873 2556677777888777766 3789999887543223344455666777888
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCcc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDS 347 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mip 347 (872)
+.++.. .+.++++.++.. +|++|-+-..+|.+..+.||+ +.+.||++|+.++||.+-+.|...-|
T Consensus 117 ~~~~d~------~d~~~~~~~~~~--------~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~P 182 (384)
T d1cs1a_ 117 VLFVDQ------GDEQALRAALAE--------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP 182 (384)
T ss_dssp EEEECT------TCHHHHHHHHHT--------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG
T ss_pred cccccC------CCHHHHHhhccc--------cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccc
Confidence 887643 256788877764 699999999999999999998 55688999999999999766642224
Q ss_pred CCCCCCCCcEEEEcccccCCC
Q 002866 348 LGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 348 LDLs~l~~DFlv~S~HK~fG~ 368 (872)
+ ++++|+++-|.=|++++
T Consensus 183 l---~~GaDiVvhS~TKyi~G 200 (384)
T d1cs1a_ 183 L---ALGADLVLHSCTKYLNG 200 (384)
T ss_dssp G---GGTCSEEEEETTTTTTC
T ss_pred c---ccCCCEEEEcccccccc
Confidence 3 46999999999999885
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=1.4e-06 Score=86.46 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC
Q 002866 198 VEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP 277 (872)
Q Consensus 198 ~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p 277 (872)
...+.+++||+++|.+ .++||+|+|+|+.+++..+. +.|+.+++.... |.+.......+...+..+..++.+
T Consensus 35 ~~~~le~~lA~~~G~~----~~~~~~sGt~A~~~al~a~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 106 (343)
T d1m6sa_ 35 TINELERLAAETFGKE----AALFVPSGTMGNQVSIMAHT-QRGDEVILEADS-HIFWYEVGAMAVLSGVMPHPVPGK-- 106 (343)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHHC-CTTCEEEEETTC-HHHHSSTTHHHHHTCCEEEEECEE--
T ss_pred HHHHHHHHHHHHHCCC----eEEEeCCHHHHHHHHHHHHh-ccCCceeccccc-cceeeecccccccccceeeccccc--
Confidence 4568899999999974 38999999999888887764 568887755432 333322223344456677666654
Q ss_pred CCccCHHHHHHHHhhhhccCCCCCceEE-EEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccC
Q 002866 278 TLKLCSTDLRKQISSKKRRKKDSAAGLF-VFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 278 ~g~Id~edLe~~I~~~~rr~~~~~T~LV-a~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~a 341 (872)
.+..+.+.++..|....+ ..+++.++ .....++..|.++|++.+ ..++++|+.+++|+++..
T Consensus 107 ~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~ 173 (343)
T d1m6sa_ 107 NGAMDPDDVRKAIRPRNI--HFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIF 173 (343)
T ss_dssp TTEECHHHHHHHSCCSCT--TSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHH
T ss_pred cCccCHHHHHHhhhhhhc--ccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccc
Confidence 456788888888865321 22345544 444566777788787633 345899999999999764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=1.8e-05 Score=86.69 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHH-HHHHHHHcCcEEEEEec
Q 002866 196 GTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNW-MAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 196 ~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~-~~~~AkrkGaeV~~Vpv 274 (872)
.+.+.+..+.|+++.|.+.-. .-.-.++|..+.-+.-....+..+.+++... -|+.... ....|+-.|++|+.++.
T Consensus 107 Lq~l~e~q~~l~eltGmd~~n--~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~-~~p~~~~v~~t~a~~~g~~vv~v~~ 183 (437)
T d1wyua1 107 LQATFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQG-VHPEYRAVLRAYLEAVGAKLLTLPL 183 (437)
T ss_dssp HHHHHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETT-SCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCccc--cCchHHHHHHHHHHHHHHhhhcccccccccc-cChHHhhhhhhhcccceeeEEeeec
Confidence 378889999999999985321 2223566665443332222334455655432 3444433 34567778999999988
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccCCCCCC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSLGLSLF 353 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipLDLs~l 353 (872)
+.. ..+..+ + +.++.-|.++.- |..|.+.+++ ++..+|+.|..+++|+...+-. .--.-.++
T Consensus 184 ~~~--~~~~~~----~--------~~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~--~l~~Pg~~ 246 (437)
T d1wyua1 184 EGG--RTPLPE----V--------GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLG--VLKPPGAY 246 (437)
T ss_dssp BTT--BCCCCC----C--------CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGG--TBCCHHHH
T ss_pred ccc--cchhhh----h--------ccceeEEEEccc-cccccccchHHHHHHhhhccceEEeeechhhhh--cccccccc
Confidence 642 222221 1 234655555544 7789999997 4567899999988887743211 12234567
Q ss_pred CCcEEEEcccccCCCCCC-----ceEEEEEeCCCcccccC
Q 002866 354 RPDFIITSFYRVFGFDPT-----GFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 354 ~~DFlv~S~HK~fG~~Pt-----GvG~LyVRk~~i~~L~P 388 (872)
++|+++++ ||-||. |. |.|++.+++.....+.+
T Consensus 247 GaDi~~g~-~q~fg~-p~g~GGP~~G~~a~~~~l~r~lPg 284 (437)
T d1wyua1 247 GADIAVGD-GQSLGL-PMGFGGPHFGFLATKKAFVRQLPG 284 (437)
T ss_dssp TCSEEEEE-CTTTTC-CCGGGCSCCEEEEECGGGGGGCCS
T ss_pred ccceEeec-cceecc-ccCCCcCccccccccchhhccccc
Confidence 99999999 544444 44 45889888887666643
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.35 E-value=6.4e-07 Score=96.76 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=111.2
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC------CCCCCeEEEecccCchhHHHHHHHH
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP------FHTNKKLLTMFDYESQSVNWMAQSA 262 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp------f~~Gd~ILT~~DhEHnSVl~~~~~A 262 (872)
.|+.. ..+.+.++++++++|.+ .++||+++|+|..+++..+. ...+..++.. ..++.+.... .
T Consensus 70 ~y~~~---~~~~~le~~~a~l~g~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~-~~h~~t~~~~---~ 138 (465)
T d1ax4a_ 70 AYAGS---RNYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAH---V 138 (465)
T ss_dssp CSSSC---HHHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHHHHH---H
T ss_pred hhccC---hHHHHHHHHHHHHHCCC----EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEec-cchhhhhHHH---H
Confidence 46543 23567888999999984 49999999999887766541 1112234433 2334444333 2
Q ss_pred HHcCcEEEEEec---------cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCccc-chhcHHH---H-HHHHH
Q 002866 263 KEKGAKVYSAWF---------KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTG-AKYSYQW---M-ALAQQ 328 (872)
Q Consensus 263 krkGaeV~~Vpv---------d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG-~i~PLe~---I-~~Are 328 (872)
...|.....++. +...+.++.++|+++|.... ...+.++.++..+|..| ..+|.+. | +.|++
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~ 214 (465)
T d1ax4a_ 139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG----ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 214 (465)
T ss_dssp HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC----GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc----cccccceeeccccccCceecCCHHHHHHHHHHHHH
Confidence 345777765532 22246789999999997532 12466777777777654 4455543 3 46799
Q ss_pred CCcEEEeeccccCCCC-------CccCCCCC--------CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 329 NHWHVLLDAGSLGPKD-------MDSLGLSL--------FRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 329 ~G~~VLVDAAQ~aG~~-------mipLDLs~--------l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
+|+.+++|+|+..+.- ....+.+. ..+|.+++|+||.+++ | +.|++++++.
T Consensus 215 ~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~-~-~~g~l~~~~~ 280 (465)
T d1ax4a_ 215 HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL-N-IGGLVAIRDN 280 (465)
T ss_dssp HTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCC-S-SCEEEEESSC
T ss_pred cCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccc-c-cceeEeecch
Confidence 9999999999874310 00011110 1269999999998775 4 5688888765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=98.33 E-value=2.1e-06 Score=91.53 Aligned_cols=172 Identities=10% Similarity=0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHhc----CC--CCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 201 DIKTRIMDHL----NI--PENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 201 eARerIA~lL----gA--~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
+.|+.||+++ |. ++.+ +|++|+|+++|+.+++..+- .+|+.|++..- .+.... ..+...|++++.+++
T Consensus 70 ~lReaiA~~~~~~~g~~~~p~~-~I~it~G~~~al~~~~~~l~-~~gd~vlv~~P-~y~~~~---~~~~~~g~~~~~v~~ 143 (418)
T d2r5ea1 70 RLVQALSKLYSQLVDRTINPMT-EVLVTVGAYEALYATIQGHV-DEGDEVIIIEP-FFDCYE---PMVKAAGGIPRFIPL 143 (418)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTT-SEEEESHHHHHHHHHHHHHC-CTTCEEEEEES-CCTTHH---HHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCccc-eEEEcCCCchhhhhhhhhcc-ccccceecccc-ccchhh---HHHHHcCCeEEEEEe
Confidence 5677777765 54 3322 59999999999999999874 78999876532 123333 344557999999988
Q ss_pred cCCCC---------ccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccC
Q 002866 275 KWPTL---------KLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 275 d~p~g---------~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~a 341 (872)
+.... .++.+++.... ..+++++.++.-+|.||..++-+. +..|++++++++.|.+-..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~ 215 (418)
T d2r5ea1 144 KPNKTGGTISSADWVLDNNELEALF--------NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH 215 (418)
T ss_dssp EESCCSSCEEGGGEECCHHHHHHHC--------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred cccccccchhhhhhhhhHHHHhhhh--------hccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhh
Confidence 64322 23444444332 346899999999999999999863 4567999999999998532
Q ss_pred ----CCCCcc-CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 342 ----PKDMDS-LGLSL-FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 342 ----G~~mip-LDLs~-l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
+..+.+ ..+.. ...-.++.|+=|.|+.+---+|.++..+..++.+
T Consensus 216 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~ 266 (418)
T d2r5ea1 216 MVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNL 266 (418)
T ss_dssp CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHH
T ss_pred hccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhh
Confidence 110001 11111 1223677799999885123488888777665544
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.2e-06 Score=90.33 Aligned_cols=174 Identities=9% Similarity=0.086 Sum_probs=116.3
Q ss_pred HHHHHHHHHhc----CCCCC-CCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEec
Q 002866 200 HDIKTRIMDHL----NIPEN-EYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWF 274 (872)
Q Consensus 200 eeARerIA~lL----gA~~d-EY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpv 274 (872)
.+.|+.||+++ |.+.+ +-.|+.|+|+++|+.+++..+- .+|+.|++..-. .... ...+...|+.+..++.
T Consensus 66 ~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~-y~~~---~~~~~~~g~~~~~~~~ 140 (382)
T d1u08a_ 66 QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPS-YDSY---APAIALSGGIVKRMAL 140 (382)
T ss_dssp HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESC-CTTH---HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEeccc-ccch---hhhhhhccccceeccc
Confidence 36777777765 55432 2259999999999999998874 688988765321 1222 2344567888888888
Q ss_pred cCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHH----HHHHHCCcEEEeeccccCCC-C-CccC
Q 002866 275 KWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWM----ALAQQNHWHVLLDAGSLGPK-D-MDSL 348 (872)
Q Consensus 275 d~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I----~~Are~G~~VLVDAAQ~aG~-~-mipL 348 (872)
+.....++.++++..+. ++++++.++.-+|.||++++.+.+ ..+.++++.++.|..-..-. . ..+.
T Consensus 141 ~~~~~~~d~~~l~~~~~--------~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~ 212 (382)
T d1u08a_ 141 QPPHFRVDWQEFAALLS--------ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA 212 (382)
T ss_dssp CTTTCCCCHHHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCC
T ss_pred ccccccCCHHHHhhhhc--------cCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccc
Confidence 87667778888876554 358899999999999999998643 44578899998887732211 0 0011
Q ss_pred CCCC----CCCcEEEEcccccCCCCCCceEEEEEeCCCcccc
Q 002866 349 GLSL----FRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 349 DLs~----l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L 386 (872)
.... ..--.+..|+=|.++.+-..+|.++..+..+..+
T Consensus 213 ~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~ 254 (382)
T d1u08a_ 213 SVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEI 254 (382)
T ss_dssp CGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHH
T ss_pred cccccccccCcEEEEeeccccccCCcccchhhhccchhHHHH
Confidence 1111 1123789999998886224588887766655433
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.30 E-value=7.4e-06 Score=88.87 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=113.4
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 190 YGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 190 ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
.+||.. +..-++||++-|+. ..+.++++..|+..+..++ .++||+||...+.-.....-+....++.|+++
T Consensus 64 ~~nPt~----~~LE~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~ 134 (398)
T d1qgna_ 64 YGNPTT----VVLEEKISALEGAE----STLLMASGMCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITA 134 (398)
T ss_dssp GCCHHH----HHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred CCChHH----HHHHHHHHHHhCCc----eEEEecCcchHHHHHHhhc-ccccccccccccccchhhhhhccccccccccc
Confidence 467753 45667899998873 2667788888888877776 47899998876533344444456677789999
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeeccccCCCCCccC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSLGPKDMDSL 348 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~aG~~mipL 348 (872)
.++... +.++..+.+.. ++|++|-+-..+|.+..+.||+ +.++||++|+.++||.+=+.|...-|+
T Consensus 135 ~~~~~~------~~~~~~~~~~~-------~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl 201 (398)
T d1qgna_ 135 TVIDPA------DVGALELALNQ-------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKAL 201 (398)
T ss_dssp EEECSS------CHHHHHHHHHH-------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTT
T ss_pred cccccc------chhhhhhhhcc-------ccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCch
Confidence 887532 23444443322 3699999999999999999998 556789999999999996555321233
Q ss_pred CCCCCCCcEEEEcccccCCC
Q 002866 349 GLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 349 DLs~l~~DFlv~S~HK~fG~ 368 (872)
++++|+++-|.=|++|+
T Consensus 202 ---~~GaDiVihS~TKy~~G 218 (398)
T d1qgna_ 202 ---ALGADLVLHSATKFLGG 218 (398)
T ss_dssp ---TTTCSEEEECTTTTTTC
T ss_pred ---hhCCCEEEEechhhcCc
Confidence 46999999999999886
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.25 E-value=5.9e-06 Score=91.23 Aligned_cols=207 Identities=10% Similarity=0.031 Sum_probs=130.8
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHH-HhhccCcCcCCC-chHHHHHHHHHHHHHhcCCCCCC-CcEEEeCCHHHHHHHH
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEIT-ANLSNHALYGGA-EKGTVEHDIKTRIMDHLNIPENE-YGLVFTVSRGSAFKLL 232 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~-~nL~~~~~ygNp-sS~~~ieeARerIA~lLgA~~dE-Y~VVFTsnATeALnLV 232 (872)
++-...|+.|+++.-- .|. ..+. .... .-.|++- ...++..-+.+++.++||++++. |.-|=.-+++.|...|
T Consensus 38 aSEN~~S~~v~~algS--~l~-nkYaeG~pg-~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av 113 (470)
T d1rv3a_ 38 ASENFASRAVLEALGS--CLN-NKYSLGYPG-QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAV 113 (470)
T ss_dssp TTCCCCCHHHHHHHTS--GGG-TCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHH
T ss_pred cCCCcCCHHHHHHhcc--hhc-ccccCCCCC-ccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHH
Confidence 4556788899887421 110 0000 0000 0123322 22356667899999999997543 2333346778888878
Q ss_pred HhhCCCCCCCeEEEec-cc-CchhHHH----HHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEE
Q 002866 233 AESYPFHTNKKLLTMF-DY-ESQSVNW----MAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFV 306 (872)
Q Consensus 233 aeslpf~~Gd~ILT~~-Dh-EHnSVl~----~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa 306 (872)
..++ .++||.|+... ++ -|-+--. ....+..+..++...+++..++.||.+++++..... +.+|+.
T Consensus 114 ~~al-l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~-------kPklIi 185 (470)
T d1rv3a_ 114 YTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-------HPKLII 185 (470)
T ss_dssp HHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-------CCSEEE
T ss_pred HHHh-cCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhh-------CcceEe
Confidence 7777 48999988642 21 1111100 000012234678888999888999999999988764 467888
Q ss_pred EeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCC-----CCCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 307 FPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGP-----KDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 307 ~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG-----~~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
+..-+ .=..+|++.++ .|.+.|+++++|++|.+| .-..|| . .+|++++|.||.|.+ |.| |+++.++
T Consensus 186 ~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl--~--~aDvvt~tTHKtlrG-Prg-GiI~~~~ 257 (470)
T d1rv3a_ 186 AGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF--E--HCHVVTTTTHKTLRG-CRA-GMIFYRR 257 (470)
T ss_dssp ECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG--G--TCSEEEEESSGGGCC-CSC-EEEEEEC
T ss_pred echhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh--h--eeeeeeeehhhhccC-Ccc-eEEEEcc
Confidence 76543 23456787654 679999999999998643 211244 2 469999999999988 887 7877777
Q ss_pred CC
Q 002866 381 SV 382 (872)
Q Consensus 381 ~~ 382 (872)
+.
T Consensus 258 ~~ 259 (470)
T d1rv3a_ 258 GV 259 (470)
T ss_dssp SB
T ss_pred cc
Confidence 64
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=1.6e-06 Score=93.98 Aligned_cols=177 Identities=13% Similarity=0.124 Sum_probs=111.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC--------CCCCCeEEEecccCchhHHHHHH
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP--------FHTNKKLLTMFDYESQSVNWMAQ 260 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp--------f~~Gd~ILT~~DhEHnSVl~~~~ 260 (872)
.|++.. .+.+..+++++++|.+ .++||+++|+|+.+++..+. ...+.-++....| |... ..
T Consensus 69 ~Y~~~~---~~~~le~~~a~l~G~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~-~~~~---~~ 137 (467)
T d2v1pa1 69 AFSGSR---SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYF-FDTT---QG 137 (467)
T ss_dssp CSSSCH---HHHHHHHHHHHHTCCS----EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSC-CHHH---HH
T ss_pred hhcCCc---hHHHHHHHHHHHHCCC----EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccc-cccc---HH
Confidence 466532 2456778999999984 37899999999887766542 1122223333222 2212 12
Q ss_pred HHHHcCcEEEEEeccCC---------CCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcc-cchhcHHH---H-HHH
Q 002866 261 SAKEKGAKVYSAWFKWP---------TLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVT-GAKYSYQW---M-ALA 326 (872)
Q Consensus 261 ~AkrkGaeV~~Vpvd~p---------~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvT-G~i~PLe~---I-~~A 326 (872)
.+...|+++..++.+.. .+.++.++|++.|.... ...+.++++...+|.. |..+|++. | +.|
T Consensus 138 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia 213 (467)
T d2v1pa1 138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG----PNNVPYIVATITSNSAGGQPVSLANLKAMYSIA 213 (467)
T ss_dssp HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC----GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred HHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcC----ccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence 23446899888765421 35688999999997642 1246788888877765 55556543 3 567
Q ss_pred HHCCcEEEeeccccCCCC---------CccCCCC------CCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 327 QQNHWHVLLDAGSLGPKD---------MDSLGLS------LFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 327 re~G~~VLVDAAQ~aG~~---------mipLDLs------~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
+++|+++++|+|++++.. .....+. -..+|.+++|.||.+++ |. -|++..++..
T Consensus 214 ~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~-~~-gg~i~~~~~~ 282 (467)
T d2v1pa1 214 KKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-PM-GGLLCMKDDS 282 (467)
T ss_dssp HHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-SS-CEEEEECSGG
T ss_pred HHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCC-CC-ceeEEecchh
Confidence 999999999999865320 0000110 12479999999998886 43 4556655544
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=8.7e-06 Score=88.90 Aligned_cols=155 Identities=10% Similarity=0.006 Sum_probs=107.6
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. +..-++||.+=|+. +.++| +++-.|+..+..++ .++||+||+..+.-+....-+...+++.|++
T Consensus 54 R~~nPT~----~~LE~~la~LE~~~---~a~~~-~SGmaAi~~~~~~l-~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~ 124 (421)
T d2ctza1 54 RIMNPTV----DVLEKRLAALEGGK---AALAT-ASGHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp TTBCHHH----HHHHHHHHHHHTCS---EEEEE-SSHHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred CCCCHHH----HHHHHHHHHHhCCC---eEEEe-cChHHHHHHHHHhh-cccccceeecCCcCCchhHHHHHHHhhcccc
Confidence 3567753 45566888888874 24555 55556666665555 3689999987653333333344567889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHHHHCCcEEEeecccc-CCCCCc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALAQQNHWHVLLDAGSL-GPKDMD 346 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~Are~G~~VLVDAAQ~-aG~~mi 346 (872)
+.++.... ..+..+..+ .++|+||-+-..+|.+..++||+ +.+.||++|+.++||-+=+ .|...-
T Consensus 125 ~~~~d~~~-----~~~~~~~~~--------~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~ 191 (421)
T d2ctza1 125 VRFTSREE-----RPEEFLALT--------DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLR 191 (421)
T ss_dssp EEECCTTC-----CHHHHHHHC--------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCC
T ss_pred ceeccccc-----Ccchhcccc--------CCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecc
Confidence 98764321 223333333 24799999999999999999998 5567899999999999854 343112
Q ss_pred cCCCCCCCCcEEEEcccccCCC
Q 002866 347 SLGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~ 368 (872)
|+ ++++|+++-|.-|++|+
T Consensus 192 Pl---~~GaDiVvhS~TKyl~G 210 (421)
T d2ctza1 192 PL---AWGAALVTHSLTKWVGG 210 (421)
T ss_dssp GG---GGTCSEEEEETTTTTTC
T ss_pred cc---ccCCcEEEEechhhccC
Confidence 44 35999999999999886
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=98.19 E-value=5.4e-06 Score=89.75 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=119.6
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. +..-++|+++=|+.. .+.++++-.|+..+..++ .++|++|+.....-............+.|++
T Consensus 55 R~~nPT~----~~le~~la~LEg~~~----a~~~sSGmaAi~~~~l~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~ 125 (394)
T d1e5ea_ 55 RLGNPTV----SNLEGKIAFLEKTEA----CVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQ 125 (394)
T ss_dssp TTCCHHH----HHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred CCCCHHH----HHHHHHHHHHhCCcc----eeeeccchHHHHHHHHhh-cccccccccccceeehhhHhHHHHhhcccee
Confidence 3467753 456678888888742 455566778888776666 3789998876543222233445667889999
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHH-HHCCcEEEeeccccCCCCCc
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALA-QQNHWHVLLDAGSLGPKDMD 346 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~A-re~G~~VLVDAAQ~aG~~mi 346 (872)
+.+++.. +.++++++|. ++|++|-+-..+|.+..+.|++ +++.+ +++|+.++||-+=+.|...-
T Consensus 126 ~~~~d~~------d~~~~~~~i~--------~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~ 191 (394)
T d1e5ea_ 126 VDFINTA------IPGEVKKHMK--------PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN 191 (394)
T ss_dssp EEEECTT------STTHHHHHCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC
T ss_pred eeccCCC------CHHHHHHhhc--------ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCC
Confidence 9988653 3467777664 3699999999999999999998 56656 46789999999865554222
Q ss_pred cCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCcc
Q 002866 347 SLGLSLFRPDFIITSFYRVFGFDP-TGFGCLLIKKSVMG 384 (872)
Q Consensus 347 pLDLs~l~~DFlv~S~HK~fG~~P-tGvG~LyVRk~~i~ 384 (872)
|+ ++++|.++-|.=|++++.= .=.|++.++++...
T Consensus 192 Pl---~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~ 227 (394)
T d1e5ea_ 192 PV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQ 227 (394)
T ss_dssp GG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred ch---hcCCCEEEechhhhcCCCcccccccccchhhHHH
Confidence 44 5699999999999987520 11566776666543
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=1.7e-05 Score=82.60 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=108.6
Q ss_pred HHHHHHHHhc----CCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC
Q 002866 201 DIKTRIMDHL----NIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW 276 (872)
Q Consensus 201 eARerIA~lL----gA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~ 276 (872)
+.|+.|++++ |...+...|++|+|+++|+.+++..+- .+|+.|++..-. .... ...+...|..+..++.+.
T Consensus 69 ~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vlv~~P~-y~~~---~~~~~~~~~~~~~~~~~~ 143 (375)
T d1o4sa_ 69 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFSPV-WVSY---IPQIILAGGTVNVVETFM 143 (375)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESC-CTTH---HHHHHHTTCEEEEEECCG
T ss_pred HHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh-CCCCEEEEccCc-cccc---hhhhhccccccccccccc
Confidence 4555666554 444334479999999999999999884 689998765321 1112 223445677887777654
Q ss_pred CC-CccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccccCCC-CCccCC-
Q 002866 277 PT-LKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGSLGPK-DMDSLG- 349 (872)
Q Consensus 277 p~-g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ~aG~-~mipLD- 349 (872)
.+ ..++.+.++... ..+++++.++.-+|.||+.++.+. +..|++++++++.|.+..--. +..+..
T Consensus 144 ~~~~~~~~~~~~~~~--------~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~ 215 (375)
T d1o4sa_ 144 SKNFQPSLEEVEGLL--------VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSI 215 (375)
T ss_dssp GGTTCCCHHHHHHTC--------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCH
T ss_pred cccccchhHHHHHhh--------ccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccccc
Confidence 32 233444443322 346889999999999999999863 456799999999998732211 000111
Q ss_pred ---CCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 350 ---LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 350 ---Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
....+-=+++.|+=|.||.+=--+|.++..+..+.
T Consensus 216 ~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~ 253 (375)
T d1o4sa_ 216 LDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVAT 253 (375)
T ss_dssp HHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred ccccCCCCCEEEEeechhhccCCccccccccccccchh
Confidence 12234558889999988841134777776655443
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.12 E-value=6.4e-06 Score=87.17 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCCcc
Q 002866 202 IKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKL 281 (872)
Q Consensus 202 ARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~I 281 (872)
.-++||.+-|+. + .+.++++..|+..+..++ .++||+||+..+.-.....-+...+++.|+++.+++..
T Consensus 3 LE~~la~Leg~~---~-a~~~sSGMaAi~~~l~~l-l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~------ 71 (331)
T d1pffa_ 3 LEGKIAKLEHAE---A-CAATASGMGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA------ 71 (331)
T ss_dssp HHHHHHHHHTCS---E-EEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------
T ss_pred HHHHHHHHhCCC---e-EEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc------
Confidence 346889998873 2 455578888887766665 47899998775522333444456678899999987643
Q ss_pred CHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH-HHHHH-HHCCcEEEeeccccCCCCCccCCCCCCCCcEEE
Q 002866 282 CSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ-WMALA-QQNHWHVLLDAGSLGPKDMDSLGLSLFRPDFII 359 (872)
Q Consensus 282 d~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe-~I~~A-re~G~~VLVDAAQ~aG~~mipLDLs~l~~DFlv 359 (872)
+.+.+++++. ++|++|.+-..+|.+..+.+++ +++.+ |++|+.++||-+-+.|. -++.-++++|+++
T Consensus 72 d~~~~~~~i~--------~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~---~~~pl~~GaDiVv 140 (331)
T d1pffa_ 72 VPGNIEKHLK--------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI---LTNPLDLGVDIVV 140 (331)
T ss_dssp STTHHHHTCC--------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH---HCCGGGGTCSEEE
T ss_pred chhhHhhhcc--------cccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccc---cccccccCCCEEE
Confidence 3466666553 4699999999999999999997 56664 67899999998855442 2233346899999
Q ss_pred EcccccCCC
Q 002866 360 TSFYRVFGF 368 (872)
Q Consensus 360 ~S~HK~fG~ 368 (872)
-|.=|++++
T Consensus 141 ~S~TKy~~G 149 (331)
T d1pffa_ 141 HSATKYING 149 (331)
T ss_dssp EETTTTTSS
T ss_pred ecchhhcCC
Confidence 999999875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=8.8e-06 Score=88.01 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=110.4
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHH-HHHHHHcCc
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWM-AQSAKEKGA 267 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~-~~~AkrkGa 267 (872)
.++||.. +..-++||++=|+. ..+.++++-.|+..+..++ .++|++||+.... +.....+ .+.+.+.|+
T Consensus 54 R~~nPt~----~~le~~la~LEg~~----~a~~~~SGMaAi~~~l~~l-~~~Gd~iv~~~~~-Yg~T~~l~~~~l~~~Gi 123 (391)
T d1cl1a_ 54 RRGTLTH----FSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTA-YEPSQDFCSKILSKLGV 123 (391)
T ss_dssp TTCCHHH----HHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTS-CHHHHHHHHHTGGGGTC
T ss_pred CCCChhH----HHHHHHHHHHhCCc----cEEEeccccceeeehhhcc-cCCCCeEEEeccc-ccchhhhhhhccccccc
Confidence 3467753 45667888888873 2566778888887776665 4789999877542 3444443 445678899
Q ss_pred EEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHH--CCcEEEeeccccCCCC
Q 002866 268 KVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQ--NHWHVLLDAGSLGPKD 344 (872)
Q Consensus 268 eV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are--~G~~VLVDAAQ~aG~~ 344 (872)
++..+... +.+++++++ .++|++|-+-..+|.+..+.|++. .+.|++ +|+.++||-+=+.|.
T Consensus 124 ~~~~~d~~------d~~~~~~~i--------~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~- 188 (391)
T d1cl1a_ 124 TTSWFDPL------IGADIVKHL--------QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGV- 188 (391)
T ss_dssp EEEEECTT------CGGGGGGTC--------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTT-
T ss_pred ccccccCc------ccccccccc--------ccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchh-
Confidence 99987543 345555444 347999999999999999999985 455654 599999999976664
Q ss_pred CccCCCCCCCCcEEEEcccccCCC
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~ 368 (872)
-++.-++++|.++-|.=|++++
T Consensus 189 --~~~Pl~~GaDivvhS~TKy~~G 210 (391)
T d1cl1a_ 189 --LFKALDFGIDVSIQAATKYLVG 210 (391)
T ss_dssp --SSCGGGGTCSEEEEETTTTTTC
T ss_pred --hhcccccccceEEeecchhccc
Confidence 2333346999999999999886
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.10 E-value=6e-06 Score=89.64 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=130.4
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHH-hhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHH
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITA-NLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLA 233 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~-nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVa 233 (872)
++-...|+.|+++... .|. ..+.. .+. .-.|++-. ..++..-+.+++.++||+. |.-|=--+++.|...|.
T Consensus 30 aSEN~~S~~v~~a~~S--~l~-nkyaeG~pg-~ryy~G~~~id~iE~la~~ra~~lF~a~---~anVqp~SGs~An~av~ 102 (405)
T d1kl1a_ 30 ASENFVSRAVMEAQGS--VLT-NKYAEGYPG-RRYYGGCEYVDIVEELARERAKQLFGAE---HANVQPHSGAQANMAVY 102 (405)
T ss_dssp TTCCCCCHHHHHHHTS--GGG-GCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHCCS---EEECCCSSHHHHHHHHH
T ss_pred ccCCcCCHHHHHHhcC--ccc-CcCcCCCCC-ccccCCchhHHHHHHHHHHHHHHHhCCC---cceeeccCchHHHHHHH
Confidence 5556678888887421 221 00000 000 01233222 2355566899999999994 33344567788888888
Q ss_pred hhCCCCCCCeEEEec-c---cC-chhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEe
Q 002866 234 ESYPFHTNKKLLTMF-D---YE-SQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFP 308 (872)
Q Consensus 234 eslpf~~Gd~ILT~~-D---hE-HnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p 308 (872)
.++ .++||.|+... + |- |..... ..-+..++...+++..++.||.+++++++... +.+|+.+.
T Consensus 103 ~al-l~pGD~im~l~l~~GGHlshg~~~~----~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-------kPklIi~G 170 (405)
T d1kl1a_ 103 FTV-LEHGDTVLGMNLSHGGHLTHGSPVN----FSGVQYNFVAYGVDPETHVIDYDDVREKARLH-------RPKLIVAA 170 (405)
T ss_dssp HHH-CCTTCEEEEECGGGTCCGGGTCTTS----HHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-------CCSEEEEC
T ss_pred HHh-cCCCCEEEEeecccccccccCcccc----ccceEEEEEEeccchhcccccHHHHHHHHHhh-------CcceEEec
Confidence 887 58999988542 1 21 222111 11234778888998888899999999988764 46788876
Q ss_pred CccCcccchhcHHHHH-HHHHCCcEEEeeccccCCC---CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCcc
Q 002866 309 VQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 309 ~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~ 384 (872)
.-+ .-..+|++.++ .|++.|++++.|++|.+|. ...|=.+. .+|++++|.||.|.+ |.| |+++.+++..+
T Consensus 171 ~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrG-Prg-g~I~~~~~~~~ 244 (405)
T d1kl1a_ 171 ASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRG-PRG-GMILCQEQFAK 244 (405)
T ss_dssp CSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCC-CSC-EEEEECHHHHH
T ss_pred ccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh--hhhheeccccccccC-CCC-ceEEecchhHH
Confidence 543 34456777665 5799999999999986431 01222232 489999999999988 875 45555655544
Q ss_pred cc
Q 002866 385 SL 386 (872)
Q Consensus 385 ~L 386 (872)
.+
T Consensus 245 ~i 246 (405)
T d1kl1a_ 245 QI 246 (405)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.08 E-value=1.4e-05 Score=86.25 Aligned_cols=168 Identities=12% Similarity=0.057 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-CCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEecc
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFK 275 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd 275 (872)
...++.-++||+|+|.+. .++.+++..|...++..+. .++++-|+.. .+.|.++.. -++..+++++..+-
T Consensus 90 ~~h~~LE~~lA~~~g~e~----all~~sG~~An~~~i~~l~~~~~~d~i~~D-~~~Hasi~~---g~~ls~a~~~~f~H- 160 (396)
T d2bwna1 90 AYHRRLEAEIAGLHQKEA----ALVFSSAYNANDATLSTLRVLFPGLIIYSD-SLNHASMIE---GIKRNAGPKRIFRH- 160 (396)
T ss_dssp HHHHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHHHHHSTTCEEEEE-TTCCHHHHH---HHHHSCCCEEEECT-
T ss_pred hHHHHHHHHHHHHhCCCc----eeeeecchHHHHHHHHHHhcccCCCceeeh-hhhhhccch---hhhccccCceEeec-
Confidence 566789999999999852 4444555555555555553 2455655544 456776643 34456777776542
Q ss_pred CCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHHHCCcEEEeeccccCCCCCcc-------
Q 002866 276 WPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQQNHWHVLLDAGSLGPKDMDS------- 347 (872)
Q Consensus 276 ~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Are~G~~VLVDAAQ~aG~~mip------- 347 (872)
-+.+++++++... ...++++|++..+-++.|.+.|+.+ +.+++++|+.++||-||+.|. +-+
T Consensus 161 -----nd~~~l~~l~~~~----~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv-~G~~G~G~~~ 230 (396)
T d2bwna1 161 -----NDVAHLRELIAAD----DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGM-YGPRGAGVAE 230 (396)
T ss_dssp -----TCHHHHHHHHHHS----CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SSTTSCCHHH
T ss_pred -----chHHHhhhHHhhh----cccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeee-eccccccchh
Confidence 2567787777542 2235789999999999999999974 667899999999999998874 111
Q ss_pred -CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 348 -LGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 348 -LDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
+++. ..+|++++|+=|-||. .-|++..++..++.|.
T Consensus 231 ~~~~~-~~~di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~ 267 (396)
T d2bwna1 231 RDGLM-HRIDIFNGTLAKAYGV---FGGYIAASARMVDAVR 267 (396)
T ss_dssp HHTCG-GGCSEEEEESSSTTCS---CCEEEEECHHHHHHHH
T ss_pred hcCCc-eeeeeeeecccccccc---cccccchhHHHHHHHH
Confidence 1232 3579999999999995 2345555666666554
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.6e-05 Score=86.62 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=125.7
Q ss_pred CCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCc-hHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHh
Q 002866 156 CGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAE-KGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAE 234 (872)
Q Consensus 156 AAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNps-S~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVae 234 (872)
++-...|+.|+++..- .|. ..+..-....-.|++-. ..++..-+.++..++|||.. .-|=.-+++.|.-.|..
T Consensus 33 aSEN~~S~~v~~a~~S--~l~-nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~---anVqp~SGs~AN~av~~ 106 (416)
T d1dfoa_ 33 ASENYTSPRVMQAQGS--QLT-NKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY---ANVQPHSGSQANFAVYT 106 (416)
T ss_dssp TTCCCCCHHHHHHHTS--GGG-GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHH
T ss_pred cCcccCCHHHHHHhcC--ccc-CcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCc---ceeecccCccHHHHHHH
Confidence 5556688888887421 221 00000000001233332 23455668899999999953 33445777888888887
Q ss_pred hCCCCCCCeEEEec-cc-CchhHHHHHHHHHHcCcEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccC
Q 002866 235 SYPFHTNKKLLTMF-DY-ESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSR 312 (872)
Q Consensus 235 slpf~~Gd~ILT~~-Dh-EHnSVl~~~~~AkrkGaeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSN 312 (872)
++ .++||.|++.. +| .|-+-..... +..+..++...+++. ++.||.+++++..... +.+|+.+..-
T Consensus 107 Al-l~pGD~Il~l~l~~GGHlshg~~~~-~~g~~~~~~~y~~d~-~~~IDyd~l~~~a~~~-------kPklIi~G~S-- 174 (416)
T d1dfoa_ 107 AL-LEPGDTVLGMNLAHGGHLTHGSPVN-FSGKLYNIVPYGIDA-TGHIDYADLEKQAKEH-------KPKMIIGGFS-- 174 (416)
T ss_dssp HH-CCTTCEEEEECTTTTCCGGGTCTTS-HHHHHSEEEEECBCS-SSSBCHHHHHHHHHHH-------CCSEEEEECS--
T ss_pred Hh-cCCCCeeeecccccccccccccccc-ccCceEEEEecccCC-ccCccHHHHHHHHHHh-------ccceEEeccc--
Confidence 77 58999998653 21 1211100111 122346777778875 6789999999988764 4678887743
Q ss_pred cccchhcHHHHH-HHHHCCcEEEeeccccCCC---CCccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 002866 313 VTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKK 380 (872)
Q Consensus 313 vTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~mipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk 380 (872)
.....+|++.++ .|.+.|+++++|++|.+|. ...+=.+. .+|++++|.||.|.+ |.| |+++.|+
T Consensus 175 ~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrG-Prg-giI~~~~ 242 (416)
T d1dfoa_ 175 AYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAG-PRG-GLILAKG 242 (416)
T ss_dssp SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCC-CSC-EEEEESS
T ss_pred ccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccC-CCc-eEEEecc
Confidence 356788888665 6799999999999996431 01222232 379999999999988 764 4444443
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.91 E-value=3.5e-05 Score=84.77 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcE-EEeCCHHHHHHHHHhhCCCCCCCeEEEec-cc-CchhHHHHHH----HHHHcCcEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGL-VFTVSRGSAFKLLAESYPFHTNKKLLTMF-DY-ESQSVNWMAQ----SAKEKGAKV 269 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~V-VFTsnATeALnLVaeslpf~~Gd~ILT~~-Dh-EHnSVl~~~~----~AkrkGaeV 269 (872)
++..-+++++.++|||+..++.| |=.-+++.|.-.|..++ .++||.|+... ++ -|-+-..+.. ...-+-.++
T Consensus 73 ~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al-l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~ 151 (463)
T d2a7va1 73 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFES 151 (463)
T ss_dssp HHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-CCSCEECCC-----------------------------
T ss_pred HHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH-cCCCceEEeeccCcCcccccccccccccccceeeEeee
Confidence 56667899999999998765433 22356777777777777 58999986431 11 1111111100 011112334
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHH-HHHHCCcEEEeeccccCCC---CC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMA-LAQQNHWHVLLDAGSLGPK---DM 345 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~-~Are~G~~VLVDAAQ~aG~---~m 345 (872)
....++..++.||.++++++.... +.+|+.+..-+ .=..+|++.++ .|++.|+++++|++|.+|. ..
T Consensus 152 ~~Y~~d~~~~~IDyd~~~~~a~~~-------kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~ 222 (463)
T d2a7va1 152 MPYKLNPKTGLIDYNQLALTARLF-------RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV 222 (463)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHH-------CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTS
T ss_pred eeeeccCCCCcCcHHHHHHHHhhc-------CCceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhh
Confidence 444556667889999999988764 46788876533 23466787664 6699999999999986432 01
Q ss_pred ccCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 002866 346 DSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSV 382 (872)
Q Consensus 346 ipLDLs~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~ 382 (872)
.+=.+. .+|++++|.||.|.+ |.| |+++.+++.
T Consensus 223 ~~sP~~--~aDvvt~tTHKTlrG-Prg-GiIl~~~~~ 255 (463)
T d2a7va1 223 IPSPFK--HADIVTTTTHKTLRG-ARS-GLIFYRKGV 255 (463)
T ss_dssp SCCGGG--TCSEEEEESSGGGCS-CSC-EEEEEECSE
T ss_pred hcChhh--hhhhhhchhhhhhcC-CCc-eEEEEcccc
Confidence 222222 479999999999888 874 666667653
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=97.90 E-value=3.3e-05 Score=81.87 Aligned_cols=216 Identities=13% Similarity=-0.037 Sum_probs=125.8
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVFTs 223 (872)
-+|.|-.+..|..+.|.++.. .+..+-.....|+.+. -..+.|++|++++.- .++...++.|+
T Consensus 38 G~~~d~~g~~~~~~~V~~a~~--------~~~~~~~~~~~Y~p~~---G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~ 106 (412)
T d1ajsa_ 38 GAYRTDDCQPWVLPVVRKVEQ--------RIANNSSLNHEYLPIL---GLAEFRTCASRLALGDDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCCCCTTSCCCCCHHHHHHHH--------HHHTCTTCCCCCCCTT---CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCcCCCCCCCCcHHHHHHHH--------HHHhCCCcCCCCCCCC---CCHHHHHHHHHHHhccCCcccccccceeeccc
Confidence 368888888888887776531 1221111001243221 234688888887632 23443567788
Q ss_pred CHHHHHHHHHhhC------CCCCCCeEEEecccCchhHHHHHHHHHHcCcEE-EEEecc-CCCCccCHHHHHHHHhhhhc
Q 002866 224 SRGSAFKLLAESY------PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV-YSAWFK-WPTLKLCSTDLRKQISSKKR 295 (872)
Q Consensus 224 nATeALnLVaesl------pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV-~~Vpvd-~p~g~Id~edLe~~I~~~~r 295 (872)
+.|.++......+ -..+||.|++..- .........+..|++. .+.+.. .....++.+.+++.+..
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P----~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~--- 179 (412)
T d1ajsa_ 107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSP----TWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN--- 179 (412)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEES----CCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH---
T ss_pred chhhHHHHHHHHHHHHhhhcCCCCCEEEEeCC----cchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHh---
Confidence 8887766654432 1468999887532 1112223344567764 343432 22234677777666653
Q ss_pred cCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecccc-CCCCCcc-------CCCCCCCCcEEEEccc
Q 002866 296 RKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGSL-GPKDMDS-------LGLSLFRPDFIITSFY 363 (872)
Q Consensus 296 r~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ~-aG~~mip-------LDLs~l~~DFlv~S~H 363 (872)
..++++++.++--+|.||..++-+ ++..|++++++++.|-+-. ...+-.. .........+++.|+-
T Consensus 180 --~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 257 (412)
T d1ajsa_ 180 --APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFS 257 (412)
T ss_dssp --SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECT
T ss_pred --ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccc
Confidence 235689999999999999999975 3466799999999998832 2110000 0011123456777777
Q ss_pred ccCCCCCCceEEEEEeCCCccc
Q 002866 364 RVFGFDPTGFGCLLIKKSVMGS 385 (872)
Q Consensus 364 K~fG~~PtGvG~LyVRk~~i~~ 385 (872)
|-|+.+=-.+|.+++....+..
T Consensus 258 k~~~~~G~R~G~~~~~~~~~~~ 279 (412)
T d1ajsa_ 258 KNFGLYNERVGNLTVVAKEPDS 279 (412)
T ss_dssp TTSCCGGGCEEEEEEECSSHHH
T ss_pred ccccCCCCCccccccchhHHHH
Confidence 7766411237888877765543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=3.3e-05 Score=83.50 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=108.0
Q ss_pred CcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcE
Q 002866 189 LYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAK 268 (872)
Q Consensus 189 ~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGae 268 (872)
.++||.. +..-++|+.+-|+. +.++|.+| -.|+..+... +.+|++|++..+.-.....-+...+.+.|++
T Consensus 51 R~gnPT~----~~lE~~la~LE~~~---~a~~~sSG-maAi~~~l~~--l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~ 120 (393)
T d1n8pa_ 51 RSQNPNR----ENLERAVAALENAQ---YGLAFSSG-SATTATILQS--LPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120 (393)
T ss_dssp TTCCHHH----HHHHHHHHHHTTCS---EEEEESCH-HHHHHHHHHT--SCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred CCCChHH----HHHHHHHHHHhCCc---eEEEecCc-hhHHHhhhhc--ccCCCeeeeeeeecccchhhhhhhhhcccce
Confidence 4577753 45667889898873 34655555 5677666543 4678998876553334444555667778998
Q ss_pred EEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHH-HHHHH----HCCcEEEeeccccCCC
Q 002866 269 VYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQW-MALAQ----QNHWHVLLDAGSLGPK 343 (872)
Q Consensus 269 V~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~-I~~Ar----e~G~~VLVDAAQ~aG~ 343 (872)
+.++.. +.+++++++. ++|++|-+-..+|.+..+.||+. ++.|| ++|+.++||-+=+.|.
T Consensus 121 ~~~~~~-------~~~~~~~~i~--------~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~ 185 (393)
T d1n8pa_ 121 TSFTND-------LLNDLPQLIK--------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp CEEESS-------HHHHHHHHSC--------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred eEEeec-------chHHHHHHhh--------hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcc
Confidence 887641 2456766664 46999999999999999999985 45666 6899999999955443
Q ss_pred CCccCCCCCCCCcEEEEcccccCCC
Q 002866 344 DMDSLGLSLFRPDFIITSFYRVFGF 368 (872)
Q Consensus 344 ~mipLDLs~l~~DFlv~S~HK~fG~ 368 (872)
..-|+ ++++|.++-|.=|++++
T Consensus 186 ~~~Pl---~~GADiVvhS~TKyi~G 207 (393)
T d1n8pa_ 186 ISNPL---NFGADIVVHSATKYING 207 (393)
T ss_dssp HCCGG---GGTCSEEEEETTTTTTC
T ss_pred cCCch---hhCCCEEEEccccccCC
Confidence 11244 46999999999999886
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=97.86 E-value=6.4e-05 Score=79.32 Aligned_cols=211 Identities=10% Similarity=-0.042 Sum_probs=123.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVFTs 223 (872)
-+|.|-.+..|+.+.|.++.. .+...-.. ..|+.+. -+.+.|+.|++++.- +++ .|+-|.
T Consensus 36 G~~~d~~~~~~~~~~V~~a~~--------~~~~~~~~-~~Y~~~~---G~~~lr~aia~~~~~~~~~~~~~~--~i~~~~ 101 (401)
T d7aata_ 36 GAYRDDNGKPYVLNCVRKAEA--------MIAAKKMD-KEYLPIA---GLADFTRASAELALGENSEAFKSG--RYVTVQ 101 (401)
T ss_dssp CSCCCTTSCCCCCHHHHHHHH--------HHHHTTCC-CCCCCTT---CCHHHHHHHHHHHHCTTCHHHHTT--CEEEEE
T ss_pred CCCcCCCCCCCCCHHHHHHHH--------HHhhCCCC-CCCCCCC---CCHHHHHHHHHHHhccCCcccCcC--ceEEec
Confidence 368888888888888877632 12222111 1343321 123688888887632 233 354443
Q ss_pred --CHHH---HHHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccC
Q 002866 224 --SRGS---AFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRK 297 (872)
Q Consensus 224 --nATe---ALnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~ 297 (872)
+++. ++.+++..+ ..+||.|++..-. .... ...++..|++++.+|+.. .+...+.+.+.+.+..
T Consensus 102 ~~~~~g~~~~~~~~~~~l-~~pGd~Vlv~~P~-y~~y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (401)
T d7aata_ 102 GISGTGSLRVGANFLQRF-FKFSRDVYLPKPS-WGNH---TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK----- 171 (401)
T ss_dssp EEHHHHHHHHHHHHHHHH-CTTCCEEEEEESC-CTTH---HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-----
T ss_pred cchHHHHHHHHHHhhHhh-cCCCceEEEecCC-Ccch---hhHHHHcCCeEEEEeccccccccccHHHHHHHHhc-----
Confidence 3333 444555554 4789998765321 1122 234566899999999743 2345677777777753
Q ss_pred CCCCceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeecc-ccCCCCCccCC------CCCCCC-cEEEEccccc
Q 002866 298 KDSAAGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAG-SLGPKDMDSLG------LSLFRP-DFIITSFYRV 365 (872)
Q Consensus 298 ~~~~T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAA-Q~aG~~mipLD------Ls~l~~-DFlv~S~HK~ 365 (872)
..++++++.++.-+|.||..++.+. +..|++++++++.|-+ +....+-.+.+ ...... -+++.|+-|-
T Consensus 172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 251 (401)
T d7aata_ 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN 251 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence 2457899999999999999999863 4567999999999998 32221100000 011112 2455677776
Q ss_pred CCCCCCceEEEEEeCCCcc
Q 002866 366 FGFDPTGFGCLLIKKSVMG 384 (872)
Q Consensus 366 fG~~PtGvG~LyVRk~~i~ 384 (872)
|+.+=.-+|++++....++
T Consensus 252 ~~~~G~RiG~~~~~~~~~~ 270 (401)
T d7aata_ 252 MGLYGERAGAFTVICRDAE 270 (401)
T ss_dssp SCCGGGCEEEEEEECSSHH
T ss_pred ceeeccccceeecchHHHH
Confidence 6631123677776665543
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.00016 Score=75.83 Aligned_cols=215 Identities=13% Similarity=0.051 Sum_probs=129.3
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC------CCCCCCcEEEeC
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN------IPENEYGLVFTV 223 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg------A~~dEY~VVFTs 223 (872)
-+|.|..+..|.++.|.++..+ +..+-..+ .|+... -+.+.|+.||+++. +.++...++-|.
T Consensus 34 G~~~d~~g~~p~~~~V~~A~~~--------~~~~~~~~-~Y~p~~---G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T d2q7wa1 34 GVYKDETGKTPVLTSVKKAEQY--------LLENETTK-NYLGID---GIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHH--------HHHHCCCC-CCCCTT---CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCccCCCCCCCCCHHHHHHHHH--------HhhCCCCC-CCCCCc---CCHHHHHHHHHHHHhhcCCcccccceeeeccc
Confidence 3688888888888888877432 22221111 243221 23468888888763 123332344567
Q ss_pred CHHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCCC-ccCHHHHHHHHhhhhccCCCCC
Q 002866 224 SRGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTL-KLCSTDLRKQISSKKRRKKDSA 301 (872)
Q Consensus 224 nATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~g-~Id~edLe~~I~~~~rr~~~~~ 301 (872)
+++.++.+....+ .+.+|+.|++..- +.......++..|++++.+|.....+ ..+..++.+.+.. ...+
T Consensus 102 ~~~~~~~l~~~~l~~~~~gd~Vlvp~P----~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 172 (396)
T d2q7wa1 102 GGTGALRVAADFLAKNTSVKRVWVSNP----SWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNE-----AQAG 172 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEES----CCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-----CCTT
T ss_pred hHHHHHHHHHHHHhhcccceEEEEecC----CCccchHHHHHcCCeeEecccccccccccccchHHHHHHH-----hccC
Confidence 7777766655443 2467899876521 12223344566899999998765432 2355555555543 3456
Q ss_pred ceEEEEeCccCcccchhcHHH----HHHHHHCCcEEEeeccc-cCCCCCc-c-----CCCCCCCCcEEEEcccccCCCCC
Q 002866 302 AGLFVFPVQSRVTGAKYSYQW----MALAQQNHWHVLLDAGS-LGPKDMD-S-----LGLSLFRPDFIITSFYRVFGFDP 370 (872)
Q Consensus 302 T~LVa~p~vSNvTG~i~PLe~----I~~Are~G~~VLVDAAQ-~aG~~mi-p-----LDLs~l~~DFlv~S~HK~fG~~P 370 (872)
+.++.++--+|.||..++.+. +..|++++++++.|-+- ....+.- + .........++..|+-|.|+.+=
T Consensus 173 ~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 252 (396)
T d2q7wa1 173 DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN 252 (396)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG
T ss_pred cEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccC
Confidence 889999999999999999862 46679999999999983 2221100 0 00011234466677888776411
Q ss_pred CceEEEEEeCCCccc
Q 002866 371 TGFGCLLIKKSVMGS 385 (872)
Q Consensus 371 tGvG~LyVRk~~i~~ 385 (872)
..+|.+++....++.
T Consensus 253 ~R~G~~~~~~~~~~~ 267 (396)
T d2q7wa1 253 ERVGACTLVAADSET 267 (396)
T ss_dssp GCCEEEEEECSSHHH
T ss_pred CCccccccchhHHHH
Confidence 238888887766543
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=97.66 E-value=0.00028 Score=74.81 Aligned_cols=216 Identities=15% Similarity=0.055 Sum_probs=125.6
Q ss_pred eecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCC------CCCCCcEEEeCC
Q 002866 151 VCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNI------PENEYGLVFTVS 224 (872)
Q Consensus 151 IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA------~~dEY~VVFTsn 224 (872)
+|.|-.+-.+.++.|.++.. .+..+......|+.. .-..+.|+.|++++.- .++...++-|.+
T Consensus 38 ~~~d~~g~~~~~~~V~~A~~--------~l~~~~~~~~~Y~p~---~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~ 106 (412)
T d1yaaa_ 38 AYRDDNGKPWVLPSVKAAEK--------LIHNDSSYNHEYLGI---TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHH--------HHHTCTTCCCCCCCT---TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCcCCCCCCCCcHHHHHHHH--------HHHhCcccCCCCCCC---CCCHHHHHHHHHHHhcccCccccccceeEEeccc
Confidence 57777777777777877621 122211111124322 1234678888887532 122111222344
Q ss_pred HHHHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccC-CCCccCHHHHHHHHhhhhccCCCCCc
Q 002866 225 RGSAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKW-PTLKLCSTDLRKQISSKKRRKKDSAA 302 (872)
Q Consensus 225 ATeALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~-p~g~Id~edLe~~I~~~~rr~~~~~T 302 (872)
++.++.+.+..+ ...+||.|++..-. .... ...++..|+++..+|... ....++.+.+...+... +.++
T Consensus 107 ~~~~~~~~~~~~~~~~~gd~Vlip~P~-~~~y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 177 (412)
T d1yaaa_ 107 GTGALHISAKFFSKFFPDKLVYLSKPT-WANH---MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA-----PEGS 177 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESC-CTTH---HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS-----CTTC
T ss_pred chhHHHHHHHHHhccCCCCEEeccccc-Cchh---HHHHHHcCCceecccccccccccccchhhhcccccC-----CCce
Confidence 555544443222 23579998865321 1212 233466799999998743 23456777777777642 3468
Q ss_pred eEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeeccc-cCCCCCc---cC-------CCCCCCCcEEEEcccccCC
Q 002866 303 GLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAGS-LGPKDMD---SL-------GLSLFRPDFIITSFYRVFG 367 (872)
Q Consensus 303 ~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAAQ-~aG~~mi---pL-------DLs~l~~DFlv~S~HK~fG 367 (872)
.++.++.-+|.||+.++-+ ++..|++++++++.|-+- ....+-. +. .......-+++.|+=|-|+
T Consensus 178 ~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 257 (412)
T d1yaaa_ 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc
Confidence 8999999999999999975 345679999999999983 2221000 00 0011223377889999887
Q ss_pred CCCCceEEEEEeCCCcccc
Q 002866 368 FDPTGFGCLLIKKSVMGSL 386 (872)
Q Consensus 368 ~~PtGvG~LyVRk~~i~~L 386 (872)
.+-.-+|++++..+.+..+
T Consensus 258 ~~G~RiG~~~~~~~~~~~~ 276 (412)
T d1yaaa_ 258 MYGERVGCFHLALTKQAQN 276 (412)
T ss_dssp CGGGCEEEEEEECCSCTTH
T ss_pred cCcCceEEEEEchhhhhhH
Confidence 4223489999988776543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=97.65 E-value=0.00019 Score=75.01 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=123.7
Q ss_pred ceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC---CCCCCCcEEEeCCHH
Q 002866 150 KVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN---IPENEYGLVFTVSRG 226 (872)
Q Consensus 150 ~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg---A~~dEY~VVFTsnAT 226 (872)
-+|.|..+..+.++.|.++.. .+..+...+ .|+.... +.+.|+.|++++- .....-..+.|.+++
T Consensus 34 G~~~d~~g~~~~~~~V~~A~~--------~~~~~~~~~-~Y~p~~G---~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~ 101 (394)
T d2ay1a_ 34 GVYKDATGHTPIMRAVHAAEQ--------RMLETETTK-TYAGLSG---EPEFQKAMGELILGDGLKSETTATLATVGGT 101 (394)
T ss_dssp CSCCCTTSCCCCCHHHHHHHH--------HHHHHCCCC-CCCCSSC---CHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred CCccCCCCCCCCCHHHHHHHH--------HHhhCCCCC-CCCCCCC---CHHHHHHHHHHHhccccccccccceeccCch
Confidence 368888888888888888743 233322111 3544321 2357777777652 211111356666666
Q ss_pred HHHHHHHhhC-CCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCC-CCccCHHHHHHHHhhhhccCCCCCceE
Q 002866 227 SAFKLLAESY-PFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWP-TLKLCSTDLRKQISSKKRRKKDSAAGL 304 (872)
Q Consensus 227 eALnLVaesl-pf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p-~g~Id~edLe~~I~~~~rr~~~~~T~L 304 (872)
.+..+.+..+ ...+|+.|++..- ... .....++..|++++.+|.... ....+.+++.+.+.. ...++.+
T Consensus 102 ~~~~l~~~~~~~~~~gd~V~~p~p-~~~---~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 172 (394)
T d2ay1a_ 102 GALRQALELARMANPDLRVFVSDP-TWP---NHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA-----AKKGDMV 172 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEES-CCH---HHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT-----CCTTCEE
T ss_pred HHHHHHHHHhhhcCCceEEEEecc-ccc---chHHHHHHcCCEEEEecccchhcccccchhHHHHHhh-----cccCcEE
Confidence 6644433321 1367888876521 112 223345567899998887432 233456666665543 2346889
Q ss_pred EEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc-ccCCCCCc---c---CCCCCCCCcEEEEcccccCCCCCCce
Q 002866 305 FVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG-SLGPKDMD---S---LGLSLFRPDFIITSFYRVFGFDPTGF 373 (872)
Q Consensus 305 Va~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA-Q~aG~~mi---p---LDLs~l~~DFlv~S~HK~fG~~PtGv 373 (872)
+.++--+|.||+.++.+ ++..|++++++++.|-+ +....+.. + +......--.+..|+-|.|+.+=..+
T Consensus 173 ~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~ 252 (394)
T d2ay1a_ 173 LLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT 252 (394)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc
Confidence 99999999999999985 34667999999999988 33322100 0 00001112344556777665312358
Q ss_pred EEEEEeCCCccc
Q 002866 374 GCLLIKKSVMGS 385 (872)
Q Consensus 374 G~LyVRk~~i~~ 385 (872)
|.+.+.......
T Consensus 253 G~~~~~~~~~~~ 264 (394)
T d2ay1a_ 253 GCLLALCADAAT 264 (394)
T ss_dssp EEEEEECSSHHH
T ss_pred cchhhchhHHHH
Confidence 888887776543
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00017 Score=75.94 Aligned_cols=181 Identities=10% Similarity=0.002 Sum_probs=112.7
Q ss_pred hHHHHHhhcccC---CCCceecccCCCCCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcC
Q 002866 135 KIDQLRANEYLH---LSPKVCLDYCGFGLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLN 211 (872)
Q Consensus 135 ~ID~lR~~EFP~---L~~~IYLDyAAtgp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLg 211 (872)
.++..+++..|. |.--+|.|..+..|.++.|.+|.. .+.........|+.. .-+-+.|+.||+++.
T Consensus 16 ~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~--------~l~~~~~~~~~Y~p~---~G~~~lR~aia~~~~ 84 (397)
T d3tata_ 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEA--------RLNAQPHGASLYLPM---EGLNCYRHAIAPLLF 84 (397)
T ss_dssp HHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHH--------HHTTSCCSSBCCCCT---TCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHH--------HHHhCcccCCCCCCc---ccCHHHHHHHHHHHh
Confidence 456666665553 222468888888888888877631 121111111123321 123368999999875
Q ss_pred CC------CCCCcEEEeCCHHHH----HHHHHhhCCCCCCCeEEEecccCchhHHHHHHHHHHcCcEEEEEeccCCC-Cc
Q 002866 212 IP------ENEYGLVFTVSRGSA----FKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPT-LK 280 (872)
Q Consensus 212 A~------~dEY~VVFTsnATeA----LnLVaeslpf~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV~~Vpvd~p~-g~ 280 (872)
-. ++ .|+-|.+++.+ +.+++..+ +.+||.|++..- +.......++..|+++..+|++..+ ..
T Consensus 85 ~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~~~-~~pgd~Vlv~~P----~y~~y~~~~~~~G~~~~~v~~~~~~~~~ 157 (397)
T d3tata_ 85 GADHPVLKQQ--RVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDP----TWENHVAIFAGAGFEVSTYPWYDEATNG 157 (397)
T ss_dssp CSSCHHHHTT--CEEECCBSHHHHHHHHHHHHHHH-HCSSCCCEECSS----CCTTHHHHHHTTTCCCEECCCCCTTTSS
T ss_pred hccCCcCCcC--cEEEecCchhHHHHHHHHHHhhh-cCCCCcceeccc----CccccHHHHHHcCCEEEEEecchhhccc
Confidence 32 22 35555555543 44444433 468999876521 1212233456679999999986543 34
Q ss_pred cCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHH----HHHHHHHCCcEEEeecc
Q 002866 281 LCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQ----WMALAQQNHWHVLLDAG 338 (872)
Q Consensus 281 Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe----~I~~Are~G~~VLVDAA 338 (872)
++.+.+.+.+.. ..++++++.++.-+|.||+.++.+ ++..|+++++.++.|-+
T Consensus 158 ~~~~~~~~~~~~-----~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 214 (397)
T d3tata_ 158 VRFNDLLATLKT-----LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA 214 (397)
T ss_dssp CCHHHHHHHHTT-----CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBS
T ss_pred cchHHHHHHhhh-----cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehh
Confidence 566666666543 235688999999999999999986 34677999999999988
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=96.77 E-value=0.00095 Score=72.18 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeCCHHHHHHHHHhhCC-------CCCCCeEEEecccCchhHHHHHHHHHHcCcEE
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFTVSRGSAFKLLAESYP-------FHTNKKLLTMFDYESQSVNWMAQSAKEKGAKV 269 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFTsnATeALnLVaeslp-------f~~Gd~ILT~~DhEHnSVl~~~~~AkrkGaeV 269 (872)
++.+.+|+.-...=|+..++..||+|.|+|++|++++.++. ..+|++||+..-+ ...... .++-.|.+.
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~-y~~Y~~---~~~~~~~~~ 179 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF-YPVFRE---QTKYFDKKG 179 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSC-CHHHHH---HHHHSCBTT
T ss_pred HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCc-cccHHH---HHHHcCCCC
Confidence 44444443322223565566679999999999999998872 4678898875321 122222 223334333
Q ss_pred EEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchhcHHHHHHHHHCCcEEEeeccccCCCCCccCC
Q 002866 270 YSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLG 349 (872)
Q Consensus 270 ~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PLe~I~~Are~G~~VLVDAAQ~aG~~mipLD 349 (872)
..++ +|.+.+++.+ +++++++.++.-+|.||.+. .+..+++.++.|-+=..++- .++
T Consensus 180 ~~~~-------~D~~~~~~~~--------~~~~~ii~l~sPnNPtG~l~------~~v~~~~~~I~DEaY~~~~f-~~~- 236 (425)
T d2hoxa1 180 YVWA-------GNAANYVNVS--------NPEQYIEMVTSPNNPEGLLR------HAVIKGCKSIYDMVYYWPHY-TPI- 236 (425)
T ss_dssp EEEE-------EEGGGGTTCS--------CGGGEEEEEESSCTTTCCCC------CCSSTTCEEEEECTTCSTTT-SCC-
T ss_pred CccC-------CCHHHHHhhC--------CCCceEEEEECCCCCCcchh------hhhhhCCEEEEeccccCccc-cch-
Confidence 3232 2344443322 34689999999999999863 23346889999998555431 233
Q ss_pred CCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 002866 350 LSLFRPDFIITSFYRVFGFDPTGFGCLLIKKS 381 (872)
Q Consensus 350 Ls~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~ 381 (872)
.....-+.++.|+=|.||.+=.-+|.++++++
T Consensus 237 ~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~ 268 (425)
T d2hoxa1 237 KYKADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (425)
T ss_dssp CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred hhhcCCeEEEEeCHHhccCcchheeeEEeCCH
Confidence 23356789999999999952122788777664
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=96.51 E-value=0.02 Score=61.08 Aligned_cols=211 Identities=11% Similarity=0.058 Sum_probs=116.0
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++.-|||..+. +--.+.+++++.+ .+.+...+..+. .....+.+.+.+++.-. ..+.|
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~-----------~~~~~~~~~~~~--~~~~~la~~~~~~~~~~---~~v~f 113 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKV-----------AMEKGTSFGAPC--ALENVLAEMVNDAVPSI---EMVRF 113 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHH-----------HHTTCSCCSSCC--HHHHHHHHHHHHHSTTC---SEEEE
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHH-----------HHHhcCccccch--hHHHHHHHHHHhhCCcc---ccccc
Confidence 34789997554 2235677776432 221112222232 22234455666665432 25889
Q ss_pred eCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHH----HHHHHcC------------cEEEEEeccCCCCccCHH
Q 002866 222 TVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMA----QSAKEKG------------AKVYSAWFKWPTLKLCST 284 (872)
Q Consensus 222 TsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~----~~AkrkG------------aeV~~Vpvd~p~g~Id~e 284 (872)
+.++|+|+..+..- ..+....+|++....-|....... ....+.+ ......+ . -+.+
T Consensus 114 ~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~----~~~~ 187 (427)
T d2gsaa_ 114 VNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP--Y----NDLE 187 (427)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC--T----TCHH
T ss_pred cCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC--c----chHH
Confidence 99999997765542 112233456654332232211100 0001111 1122222 1 2678
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccCCCC--CccCCCCCCCCcE
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLGPKD--MDSLGLSLFRPDF 357 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~aG~~--mipLDLs~l~~DF 357 (872)
.+++++... ..+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.+-.. +.-.+.-.+.||+
T Consensus 188 ~le~~~~~~-----~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi 262 (427)
T d2gsaa_ 188 AVKALFAEN-----PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDL 262 (427)
T ss_dssp HHHHHHTTS-----TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSE
T ss_pred HHHHHHHhC-----CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHH
Confidence 888888642 224566777667777899988 6654 467999999999999964210 0111112347999
Q ss_pred EEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 358 IITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 358 lv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
++++-----|+ | +|++.+++++++.+.+
T Consensus 263 ~~~gK~lggG~-p--~~a~~~~~~i~~~~~~ 290 (427)
T d2gsaa_ 263 TTLGKIIGGGL-P--VGAYGGKREIMQLVAP 290 (427)
T ss_dssp EEECGGGGTTS-C--CEEEEECHHHHTTBTT
T ss_pred HhhhhccCCCc-c--eeeeeehHHHHHHhcc
Confidence 99987333455 4 4667788888777665
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.066 Score=56.65 Aligned_cols=211 Identities=10% Similarity=0.049 Sum_probs=115.2
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+. +--.+.+++|+.+ .+.........-.......+-+.++++.+.+ .|.|
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~-----------q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~ 103 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKS-----------QVDKLTLTSRAFYNNVLGEYEEYITKLFNYH----KVLP 103 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHH-----------HHTTCCCCCTTEEESSHHHHHHHHHHHHTCS----EEEE
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHH-----------HHhhCCCcccccccchHHHHHHhhhhccccc----cccc
Confidence 44789996543 3355677777533 1211111111111123445556778887653 5999
Q ss_pred eCCHHHHHHHHHhh---C-----CCCCC-CeEEEecccCchhHHHHH----HHHHHcCc-----EEEEEeccCCCCccCH
Q 002866 222 TVSRGSAFKLLAES---Y-----PFHTN-KKLLTMFDYESQSVNWMA----QSAKEKGA-----KVYSAWFKWPTLKLCS 283 (872)
Q Consensus 222 TsnATeALnLVaes---l-----pf~~G-d~ILT~~DhEHnSVl~~~----~~AkrkGa-----eV~~Vpvd~p~g~Id~ 283 (872)
+.++|+|......- + ....+ ..+++....-|....... ....+.+. .+..+|.+ +.
T Consensus 104 ~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~------d~ 177 (404)
T d2byla1 104 MNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DL 177 (404)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT------CH
T ss_pred ccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc------CH
Confidence 99999986654332 1 11222 345554443343222111 11122221 23444432 56
Q ss_pred HHHHHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCC
Q 002866 284 TDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRP 355 (872)
Q Consensus 284 edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~ 355 (872)
+++++.+.. .+...|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.+ |.. +.-.+.-.+.|
T Consensus 178 ~~l~~~l~~-------~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~P 250 (404)
T d2byla1 178 PALERALQD-------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 250 (404)
T ss_dssp HHHHHHHTS-------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHhcCC-------CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCC
Confidence 788887753 24666777666667898887 5544 567999999999999863 221 11122223468
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 356 DFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 356 DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
|.++++ |-+|+.=.=+|++++++++.+.+.+
T Consensus 251 Di~~~g--K~l~gG~~p~~av~~~~~i~~~~~~ 281 (404)
T d2byla1 251 DIVLLG--KALSGGLYPVSAVLCDDDIMLTIKP 281 (404)
T ss_dssp SEEEEC--GGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred CEEEEC--chhhCCCccceeeeechhhhhccCC
Confidence 988654 6433200117999999988776654
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=95.82 E-value=0.075 Score=55.99 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=57.5
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeecccc-CCC--CCccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSL-GPK--DMDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~-aG~--~mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+...|.+--+....|.+.| ++.+ +.|+++|+.+++|=+|. .|. .+.-...-...||.++++ |-+|+.=.=
T Consensus 186 ~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p 263 (404)
T d1z7da1 186 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYP 263 (404)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSC
T ss_pred CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCCC
Confidence 5677777667778899888 6654 56799999999999985 221 011222234579999765 654420011
Q ss_pred eEEEEEeCCCcccccC
Q 002866 373 FGCLLIKKSVMGSLQN 388 (872)
Q Consensus 373 vG~LyVRk~~i~~L~P 388 (872)
+|++.+++++.+.+++
T Consensus 264 ~~~v~~~~~i~~~~~~ 279 (404)
T d1z7da1 264 ISAVLANDDIMLVIKP 279 (404)
T ss_dssp CEEEEECHHHHTTCCT
T ss_pred cccccchHHHHccCCC
Confidence 7899999988776654
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=94.87 E-value=0.051 Score=57.21 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=86.1
Q ss_pred CcEEEeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHH----HHHcC-----cEEEEEeccCCCCccCHHHH
Q 002866 217 YGLVFTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQS----AKEKG-----AKVYSAWFKWPTLKLCSTDL 286 (872)
Q Consensus 217 Y~VVFTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~----AkrkG-----aeV~~Vpvd~p~g~Id~edL 286 (872)
..|.||.++|+|+...+.. ..+.....|++....-|......... ..+.+ ..+..+|.+ +.+.|
T Consensus 97 ~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~------d~~~l 170 (387)
T d1vefa1 97 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN------DVEAL 170 (387)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT------CHHHH
T ss_pred eeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC------CHHHH
Confidence 3699999999997765442 22223345665433223332221110 11111 234445532 45677
Q ss_pred HHHHhhhhccCCCCCceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEE
Q 002866 287 RKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFI 358 (872)
Q Consensus 287 e~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFl 358 (872)
++.+.. +..-|.+--+....|.+.| ++.+ +.|+++|+.+++|=+|.+ |.. +.....-.+.||++
T Consensus 171 ~~~~~~--------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~ 242 (387)
T d1vefa1 171 KRAVDE--------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL 242 (387)
T ss_dssp HHHCCT--------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE
T ss_pred HHhcCC--------CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCcee
Confidence 766532 3556666666666788877 5545 467999999999999863 321 01111113579999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCcccccC
Q 002866 359 ITSFYRVFGFDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 359 v~S~HK~fG~~PtGvG~LyVRk~~i~~L~P 388 (872)
+++--=--|+ | +++...+++.+..+.+
T Consensus 243 ~~gK~l~gG~-~--~~~~~~~~~~~~~~~~ 269 (387)
T d1vefa1 243 TLAKALGGGV-P--LGVAVMREEVARSMPK 269 (387)
T ss_dssp EECGGGGTTS-S--CEEEEEEHHHHHTSCT
T ss_pred eecccCCCCc-c--ccccccceeeeecccc
Confidence 9872211244 3 4666777776665544
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=93.93 E-value=0.065 Score=50.69 Aligned_cols=96 Identities=5% Similarity=-0.026 Sum_probs=63.8
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHhcccCCCCCCCCCceEEEEeCCCCCccccceEEEEeccCCCCccChHHHHHHH
Q 002866 694 LDHINMLGLNKTTCRLRFLINWLVTSLLQLRFSDSDGESRAHLVHIYGPKIKYERGAAVAFNVRDKERGLINPEVVQKLA 773 (872)
Q Consensus 694 Ldh~d~lGl~~I~~R~r~L~~wLv~~L~~LrHp~~~~~ng~~LV~IYGp~~~~~RG~~VAFNv~d~~G~~v~p~~VqkLA 773 (872)
+..++.-+......+...+..++...|..+-. .+++|. ++++|.+.+ +...+++|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------------~~~~p~----~~~~v~~~~--------~~~~~~~l~ 299 (340)
T d1svva_ 244 EVLMKDNLFFELGAHSNKMAAILKAGLEACGI------------RLAWPS----ASNQLFPIL--------ENTMIAELN 299 (340)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTC------------CBSSCC----SSSEECBEE--------EHHHHHHHT
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCC------------eeecCC----CceEEEEeC--------CHHHHHHHH
Confidence 34444455666778888888999988887754 455553 456776654 456677776
Q ss_pred HHcCCeEeecccccccccCCcccCCCCCcCCCCCCCCCCCCCCcCCCCCccceeEEEEeccccCCHHHHHHHHHHHHH
Q 002866 774 EKEGISLGIGFLSHIRILDSPRQQGGSSSLDDTTLCRPMDNGRHDGKGGFIRVEVVTASLGFLTNFEDVYKLWAFVAK 851 (872)
Q Consensus 774 dr~~IsLr~G~l~~i~~~d~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~gvVrASLG~lSnFEDVyrl~~Fva~ 851 (872)
++-.+. .++. .. .+-++||.|+++.||.|||+||++.|++
T Consensus 300 ~~~~~~-------~~~~-------------------------~~------~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 300 NDFDMY-------TVEP-------------------------LK------DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp TTEECE-------EEEE-------------------------ET------TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred Hhhhhh-------cccc-------------------------cC------CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 532211 1110 00 0157999999999999999999999976
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=92.40 E-value=0.99 Score=48.71 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEe---CCHHH---HHHHHHhhCCCCCC----CeEEEecccCchhHHHHHHHHHHcC
Q 002866 197 TVEHDIKTRIMDHLNIPENEYGLVFT---VSRGS---AFKLLAESYPFHTN----KKLLTMFDYESQSVNWMAQSAKEKG 266 (872)
Q Consensus 197 ~~ieeARerIA~lLgA~~dEY~VVFT---snATe---ALnLVaeslpf~~G----d~ILT~~DhEHnSVl~~~~~AkrkG 266 (872)
+.+-+-...|+++.|.+ |+=. .++|. |+.++.. +.-+.+ ..++......|.... ......+
T Consensus 106 QalfEfQtmi~eLTGMd-----vaNaS~yDGatA~aeA~~ma~r-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 176 (471)
T d1wyub1 106 RLMWELGEYLKALTGMD-----AITLEPAAGAHGELTGILIIRA-YHEDRGEGRTRRVVLVPDSAHGSNP---ATASMAG 176 (471)
T ss_dssp HHHHHHHHHHHHHHTCS-----EEECCCSSHHHHHHHHHHHHHH-HHHHTTCTTTCCEEEEETTSCTHHH---HHHHHTT
T ss_pred HHHHHHHHHHHHHhCCC-----ccccccchHHHHHHHHHHHHHH-HhhhcccccccccccCCccccccee---eeeeccc
Confidence 67788899999999985 3211 34443 4444332 210111 122333232233222 2345567
Q ss_pred cEEEEEeccCCCCccCHHHHHHHHhhhhccCCCCCceEEEEeCccCcccchh-cHH-HHHHHHHCCcEEEeeccccCCCC
Q 002866 267 AKVYSAWFKWPTLKLCSTDLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKY-SYQ-WMALAQQNHWHVLLDAGSLGPKD 344 (872)
Q Consensus 267 aeV~~Vpvd~p~g~Id~edLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~-PLe-~I~~Are~G~~VLVDAAQ~aG~~ 344 (872)
.++..++.+. .+..+.+.+...+. ..+..+++...++ .|.+- .++ ++..+|+.|..+++|++.....-
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~a~v~v~~p~~-~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~ 246 (471)
T d1wyub1 177 YQVREIPSGP-EGEVDLEALKRELG--------PHVAALMLTNPNT-LGLFERRILEISRLCKEAGVQLYYDGANLNAIM 246 (471)
T ss_dssp CEEEEECBCT-TSSBCHHHHHHHCS--------TTEEEEEECSSCT-TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT
T ss_pred ceeecccccc-cccccchhhhhhhh--------ccccceeeccCCC-cccccchhhhhHHHHHhccccccccccchhhhh
Confidence 8888888764 46667777765443 2466666655544 55554 455 45677999999999887443210
Q ss_pred CccCCCCCCCCcEEEEcccccCCCCC-----CceEEEEEeCCCccccc
Q 002866 345 MDSLGLSLFRPDFIITSFYRVFGFDP-----TGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 345 mipLDLs~l~~DFlv~S~HK~fG~~P-----tGvG~LyVRk~~i~~L~ 387 (872)
..+.-...+.|.+++..|+.||. | .|+|++-+++.....+.
T Consensus 247 -~l~~p~~~g~div~vg~~q~~G~-P~~~GGP~~G~~a~~~~~~R~~P 292 (471)
T d1wyub1 247 -GWARPGDMGFDVVHLNLHKTFTV-PHGGGGPGSGPVGVKAHLAPYLP 292 (471)
T ss_dssp -TTCCHHHHTCSEEECCTTTTTCC-CCTTSCCCCCCEEECGGGGGGCC
T ss_pred -hccccCccccccccccccccccc-ccccccccccceeehhhhhccCC
Confidence 12233456889999999996543 3 37888888888776554
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=1 Score=47.24 Aligned_cols=220 Identities=11% Similarity=0.097 Sum_probs=109.0
Q ss_pred CCceecccCCC------CCCcHHHHHHhhhcccccHHHHHHhhccCcCcCC-Cc-hHHHHHHHHHHHHHhcCCCCCCCcE
Q 002866 148 SPKVCLDYCGF------GLFSYIQTLHYWESSTFSLSEITANLSNHALYGG-AE-KGTVEHDIKTRIMDHLNIPENEYGL 219 (872)
Q Consensus 148 ~~~IYLDyAAt------gp~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygN-ps-S~~~ieeARerIA~lLgA~~dEY~V 219 (872)
++.-|||..+. |--.+.+++++.+ .+... .+.. .. ..+...++=+++.+++.-+.. +.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~-----------q~~~~-~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~~v 104 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEA-----------QLKKL-SHTCFQVLAYEPYLELCEIMNQKVPGDFA-KKT 104 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHH-----------HTTTC-SCCCTTTEECHHHHHHHHHHHHHSSCSSC-EEE
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHH-----------HHhhc-CCcccccccCcHHHHHHHHHHhhhhhccc-cee
Confidence 45789997764 3345677776432 22111 1111 11 112333444566777643322 268
Q ss_pred EEeCCHHHHHHHHHhh-CCCCCCCeEEEecccCchhHHHHHHHHH-----HcC-----cEEEEEeccCCCCccCHH----
Q 002866 220 VFTVSRGSAFKLLAES-YPFHTNKKLLTMFDYESQSVNWMAQSAK-----EKG-----AKVYSAWFKWPTLKLCST---- 284 (872)
Q Consensus 220 VFTsnATeALnLVaes-lpf~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rkG-----aeV~~Vpvd~p~g~Id~e---- 284 (872)
.|+.++|||......- ..+....+|++....-|..........- ..+ ......+...+.......
T Consensus 105 ~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (425)
T d1sffa_ 105 LLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA 184 (425)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHH
T ss_pred eeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHH
Confidence 8999999987664332 1122334577654433554433222110 000 111222221111111111
Q ss_pred HHHHHHhhhhccCCCCCceEEEEeCccCcccchhcH-HHH----HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCc
Q 002866 285 DLRKQISSKKRRKKDSAAGLFVFPVQSRVTGAKYSY-QWM----ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPD 356 (872)
Q Consensus 285 dLe~~I~~~~rr~~~~~T~LVa~p~vSNvTG~i~PL-e~I----~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~D 356 (872)
...+.+... ........|.+--+....|.+.|- +.+ +.|+++|+.+++|=+|.+ |.. +.-.+.-.+.||
T Consensus 185 ~~~~~~~~~---~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD 261 (425)
T d1sffa_ 185 SIHRIFKND---AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD 261 (425)
T ss_dssp HHHHHHHHT---CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS
T ss_pred HHHHHHHhc---ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc
Confidence 111222111 112235556665566667876653 333 467899999999999875 421 011112235799
Q ss_pred EEEEcccccCC--CCCCceEEEEEeCCCcccccC
Q 002866 357 FIITSFYRVFG--FDPTGFGCLLIKKSVMGSLQN 388 (872)
Q Consensus 357 Flv~S~HK~fG--~~PtGvG~LyVRk~~i~~L~P 388 (872)
.++++ |-+| + | +|++.+++++.+.+.+
T Consensus 262 i~~~g--K~l~gG~-P--~~av~~~~~i~~~~~~ 290 (425)
T d1sffa_ 262 LTTFA--KSIAGGF-P--LAGVTGRAEVMDAVAP 290 (425)
T ss_dssp EEEEC--GGGGTSS-C--CEEEEEEHHHHTTSCT
T ss_pred ceecc--cccCCCc-c--eEEEEEcHHHHHhhCC
Confidence 88865 6544 4 3 7999999987765543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.95 E-value=2.5 Score=44.73 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCceEEEEeCccCcccchhcH-HH---H-HHHHHCCcEEEeeccccC
Q 002866 300 SAAGLFVFPVQSRVTGAKYSY-QW---M-ALAQQNHWHVLLDAGSLG 341 (872)
Q Consensus 300 ~~T~LVa~p~vSNvTG~i~PL-e~---I-~~Are~G~~VLVDAAQ~a 341 (872)
.....|.+--+....|.+.|= +. + +.|+++|+++++|=+|.+
T Consensus 247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 293 (461)
T d1ohwa_ 247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTG 293 (461)
T ss_dssp CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTC
T ss_pred CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccc
Confidence 457778887777777877653 33 3 457899999999999864
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=84.63 E-value=2.8 Score=43.70 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred CceEEEEeCccCcccchhc----HHHH-HHHHHCCcEEEeeccccC-CCC--CccCCCCCCCCcEEEEcccccCCCCCCc
Q 002866 301 AAGLFVFPVQSRVTGAKYS----YQWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLSLFRPDFIITSFYRVFGFDPTG 372 (872)
Q Consensus 301 ~T~LVa~p~vSNvTG~i~P----Le~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs~l~~DFlv~S~HK~fG~~PtG 372 (872)
+..-|.+--+....|.+.| ++.+ +.|+++|+++++|=+|.+ |.. +.-...-.+.||+++++===--|+ |
T Consensus 201 ~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~-p-- 277 (431)
T d1zoda1 201 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-P-- 277 (431)
T ss_dssp CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-S--
T ss_pred cccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhcccccccccc-c--
Confidence 4556666666666788776 5555 467999999999999885 431 001111235799998863222445 4
Q ss_pred eEEEEEeCCCcccc
Q 002866 373 FGCLLIKKSVMGSL 386 (872)
Q Consensus 373 vG~LyVRk~~i~~L 386 (872)
+|+.+++++....+
T Consensus 278 ~~av~~~~~~~~~~ 291 (431)
T d1zoda1 278 LAAIVTSAAIEERA 291 (431)
T ss_dssp CEEEEECHHHHHHH
T ss_pred cceeeeeecchhhh
Confidence 45566666655443
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=7.3 Score=40.65 Aligned_cols=221 Identities=10% Similarity=0.063 Sum_probs=106.9
Q ss_pred CCceecccCCC-C-----CCcHHHHHHhhhcccccHHHHHHhhccCcCcCCCchHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 002866 148 SPKVCLDYCGF-G-----LFSYIQTLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDHLNIPENEYGLVF 221 (872)
Q Consensus 148 ~~~IYLDyAAt-g-----p~p~~VieA~~e~~~F~ls~i~~nL~~~~~ygNpsS~~~ieeARerIA~lLgA~~dEY~VVF 221 (872)
++..|||..+. + --.+.+++++.+ -...+. +..++.... ....++-+++++.+..+-+ .|.|
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~--------q~~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~~~~--~v~f 108 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKS--------QIDAMS-HVMFGGITH-APAIELCRKLVAMTPQPLE--CVFL 108 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHH--------HHHHCS-CCCCSSEEC-HHHHHHHHHHHHHSCTTCC--EEEE
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHH--------HHHhcC-CcccCCccc-hHHHHHHHHHHhhhccCcc--eeee
Confidence 34789995432 2 245777777533 112221 112222111 2233444566667665433 6999
Q ss_pred eCCHHHHHHHHHh---hCCC---CCCCeEEEecccCchhHHHHHHHHH-----Hc-----CcEEEEEeccCC--CCcc--
Q 002866 222 TVSRGSAFKLLAE---SYPF---HTNKKLLTMFDYESQSVNWMAQSAK-----EK-----GAKVYSAWFKWP--TLKL-- 281 (872)
Q Consensus 222 TsnATeALnLVae---slpf---~~Gd~ILT~~DhEHnSVl~~~~~Ak-----rk-----GaeV~~Vpvd~p--~g~I-- 281 (872)
+.++++|+...+. .+.- ....+|++...--|........... .. .......|.... ....
T Consensus 109 ~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (429)
T d1s0aa_ 109 ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDE 188 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCG
T ss_pred ccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccch
Confidence 9999998765433 2210 1234577654422333322111100 00 011122221110 0111
Q ss_pred -CHHHHHHHHhhhhccCCCCCceEEEE-eCccCcccchhc-H---HHH-HHHHHCCcEEEeeccccC-CCC--CccCCCC
Q 002866 282 -CSTDLRKQISSKKRRKKDSAAGLFVF-PVQSRVTGAKYS-Y---QWM-ALAQQNHWHVLLDAGSLG-PKD--MDSLGLS 351 (872)
Q Consensus 282 -d~edLe~~I~~~~rr~~~~~T~LVa~-p~vSNvTG~i~P-L---e~I-~~Are~G~~VLVDAAQ~a-G~~--mipLDLs 351 (872)
+.+++++.+... ......|.+ |.+.+.-|.+.| - +.+ +.|+++|+.+++|=+|.+ |.. +.-...-
T Consensus 189 ~~~~~~~~~~~~~-----~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~ 263 (429)
T d1s0aa_ 189 RDMVGFARLMAAH-----RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263 (429)
T ss_dssp GGGHHHHHHHHHH-----TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hhhhhhhhhhhhc-----CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccc
Confidence 334454444432 123444444 455576676554 2 333 456899999999999873 221 1112222
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCCccccc
Q 002866 352 LFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLQ 387 (872)
Q Consensus 352 ~l~~DFlv~S~HK~fG~~PtGvG~LyVRk~~i~~L~ 387 (872)
.+.||+++++--=.-|+-| +|++.+++++.+.+.
T Consensus 264 ~v~PDi~~~gK~l~gG~~p--~~av~~~~~i~~~~~ 297 (429)
T d1s0aa_ 264 EIAPDILCLGKALTGGTMT--LSATLTTREVAETIS 297 (429)
T ss_dssp TCCCSEEEECGGGGTSSSC--CEEEEECHHHHHHHH
T ss_pred eeccccccccccccccccc--ccchhhHHHHHhccC
Confidence 3579999886322233213 788888988776554
|