Citrus Sinensis ID: 002872

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870--
MKKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
cccEEEEEEHHHHHHHHHHHHHHccccccccccccccccEEEEEccccccccEEEccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEcccccEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccEEEEEHHHHHHcccHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHccccEEEEEcccccEEEEEEccccEEEEEEccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEcccccccccEEEEEccEEcccccccccEEEEEEEccccEEEEEEccEEEEEEccccccccccEEEEEEccccEEcccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEccccEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccEEEEccccccccccEEEcccccccccEEEEEEcccccEEEEEEEcccccccEEEEEEEccccccccccEEEEEcccccccccccEEEEcccccEEEccccccccccEEEEEEEcc
ccHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHccHHHHcccccHHHHHHHHHHHHccccccccccccccccccEccHHcEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHcccHHHHcHHHHcccccccccccccccEEEEHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccEEccccccEEEccccccccccccccEEEEEccccccEEEEEEEEccEEEcccccEEEEEEEcccccccccEEEEEEEcccccccEEEEEEEcccHcccccEEEEEccEEEcccccccEEEEEEEcccccEEEEEEcccEEEEEccccccccccEEEEEEccEEEEEcccccccccccccccccccccccccccccEEEccccccccEEEEccccccccEEEccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEEccccccccEEEEEEccccccEEEEEcccccccEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEccccccEccccHHccccccEEEEEEccc
mkkwmcsiGFFKFLLTFLLIVSAAQAKECtnaypelashTFRSNLLSSKNESYIKQIHshndhltpsddsawlslmprkiLREEEQDELFSWAMLYRKIknpgqfkvpersgeflkevslhdvrlgsdsmHWRAQQTNLEYLLMLDVDKLVWNFRktarlpapgepyggweepscelrghfVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEigsgylsafpteQFDRLEalipvwapyyTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLahlfdkpcfLGLLAlqaddisgfhsnthipivigsqmryevtgDQLHKTISMFFMDIVnsshtyatggtsvgefwsdpkrlasnldsnteescTTYNMLKVSRHLFRWTKEIAYADYYErsltngvlgiqrgtepgvmiyllplapgsskersyhhwgtpsdsfwccygtgiesfsklgdsiyfeeegkypgVYIIQYISSrldwksgqivvnqkvdpvvswdpylrVTLTfsskgsglttslnlriptwtssngakatlngqdlplpspgnflsvtktwssddkltiqlpltlrteaiqddrpeyaSIQAILYgpyvlaghsigdwditesatslsdwitpipasynsqLITFTQeygntkfvltnsnqsitmekfpksgtdAALHATFRLILndssgsefsslndfigksvmlepfdspgmlviqhetddelvvtdsfiaqgsSVFHLVAGldggdrtvslesetykGCFVYTAVnlqssestklgcisesteagfnNAASFVIEkglseyhpisfvakganrnFLLApllslrdesytvyfdfqs
MKKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTArlpapgepygGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLAsnldsnteescTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKvdpvvswdpYLRVTLtfsskgsglttslNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPllslrdesyTVYFDFQS
MKKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
***WMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFR****************************AWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSD**************SCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGS**ERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWT********************NFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITM*******TDAALHATFRLILNDS***EFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDF**
*****CSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYR*****************LKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDS****************MLEPFDSPGMLVIQHETD****************FHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
MKKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP*********HWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
*KKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQ*K****SGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKWMCSIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query872
224053368858 predicted protein [Populus trichocarpa] 0.974 0.990 0.710 0.0
225435510864 PREDICTED: uncharacterized protein LOC10 0.973 0.982 0.697 0.0
224075776858 predicted protein [Populus trichocarpa] 0.966 0.982 0.702 0.0
359478753874 PREDICTED: uncharacterized protein LOC10 0.969 0.966 0.686 0.0
449448754868 PREDICTED: uncharacterized protein LOC10 0.961 0.965 0.666 0.0
356541181854 PREDICTED: uncharacterized protein LOC10 0.970 0.990 0.657 0.0
356541912854 PREDICTED: uncharacterized protein LOC10 0.967 0.988 0.660 0.0
15239944861 uncharacterized protein [Arabidopsis tha 0.978 0.990 0.632 0.0
297807309860 hypothetical protein ARALYDRAFT_350453 [ 0.971 0.984 0.629 0.0
356557388841 PREDICTED: uncharacterized protein LOC10 0.955 0.990 0.640 0.0
>gi|224053368|ref|XP_002297785.1| predicted protein [Populus trichocarpa] gi|222845043|gb|EEE82590.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1283 bits (3321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/861 (71%), Positives = 723/861 (83%), Gaps = 11/861 (1%)

Query: 14  LLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWL 73
           L+   ++     +KECTN   +L+SHTFR  LLSS+NE++ +++ +H  HLTP+DDSAW 
Sbjct: 7   LVVLSMLCGFGTSKECTNTPTQLSSHTFRYALLSSENETWKEEMFAHY-HLTPTDDSAWA 65

Query: 74  SLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWR 133
           +L+PRKILREE++   +SWAM+YR +K+P      + SG FLKEVSLH+VRL   S+HW+
Sbjct: 66  NLLPRKILREEDE---YSWAMMYRNLKSP-----LKSSGNFLKEVSLHNVRLDPSSIHWQ 117

Query: 134 AQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMW 193
           AQQTNLEYLLMLDVD LVW+FRKTA L  PG  YGGWE P+CELRGHFVGHYLSASA MW
Sbjct: 118 AQQTNLEYLLMLDVDSLVWSFRKTAGLSTPGTAYGGWEAPNCELRGHFVGHYLSASAQMW 177

Query: 194 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILA 253
           ASTHN+ L+++MSAVVSALS+CQ+++GSGYLSAFP+E FDR EA+ PVWAPYYTIHKILA
Sbjct: 178 ASTHNDILEKQMSAVVSALSSCQEKMGSGYLSAFPSELFDRFEAIKPVWAPYYTIHKILA 237

Query: 254 GLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLF 313
           GLLDQYT+ADNA+AL+M  WMV+YFYNRV+NVI  +S+ERH+Q+LNEE GGMNDVLYKLF
Sbjct: 238 GLLDQYTFADNAQALKMVKWMVDYFYNRVRNVITNFSVERHYQSLNEETGGMNDVLYKLF 297

Query: 314 CITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKT 373
            IT DPKHL+LAHLFDKPCFLGLLA+QA+DISGFH+NTHIPIVIG+QMRYE+TGD L+K 
Sbjct: 298 SITGDPKHLVLAHLFDKPCFLGLLAVQAEDISGFHANTHIPIVIGAQMRYEITGDPLYKD 357

Query: 374 ISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWT 433
           I  FFMDIVNSSH+YATGGTSV EFWSDPKRLAS L +  EESCTTYNMLKVSRHLFRWT
Sbjct: 358 IGTFFMDIVNSSHSYATGGTSVSEFWSDPKRLASTLQTENEESCTTYNMLKVSRHLFRWT 417

Query: 434 KEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYG 493
           KE+AYADYYER+LTNGVLGIQRGTEPGVMIY+LP  PGSSK +SYH WGT  D+FWCCYG
Sbjct: 418 KEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQHPGSSKGKSYHGWGTLYDTFWCCYG 477

Query: 494 TGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVT 553
           TGIESFSKLGDSIYFEEEG+ PG+YIIQYISS LDWKSGQI++NQKVDPVVS DPYLRVT
Sbjct: 478 TGIESFSKLGDSIYFEEEGEAPGLYIIQYISSSLDWKSGQIMINQKVDPVVSSDPYLRVT 537

Query: 554 LTFS-SKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTI 612
            TFS +KGS   ++LNLRIP WT  +GA AT+N Q L +P+PG+FLSV + WSS DKL++
Sbjct: 538 FTFSPNKGSSQASTLNLRIPVWTHLDGATATINSQSLAIPAPGSFLSVNRKWSSGDKLSL 597

Query: 613 QLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITE-SATSLSDWITPIPASY 671
           QLP++LRTEAIQDDR +YASIQAILYGPY+LAGH+ GDW++   SA SLSD ITPIPASY
Sbjct: 598 QLPISLRTEAIQDDRHQYASIQAILYGPYLLAGHTSGDWNLKAGSAGSLSDSITPIPASY 657

Query: 672 NSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLND 731
           N QL++F+Q+ GN+ FVLTNSNQSITME+ PKSGTDA L ATFR++ NDSS SE   +ND
Sbjct: 658 NEQLVSFSQDSGNSTFVLTNSNQSITMEEHPKSGTDACLQATFRIVFNDSSSSEVLGIND 717

Query: 732 FIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESET 791
            I KSVMLEPFD PGML++Q   D  L VT+S    GSS+FH+V GLDG D TVSLES +
Sbjct: 718 VIDKSVMLEPFDLPGMLLVQQGKDSSLAVTNSAADDGSSIFHVVLGLDGKDGTVSLESGS 777

Query: 792 YKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNF 851
            +GC++Y+ VN +S +S KL C   S++ GFN  ASFV+ KGLSEYHPISFVA+G  RNF
Sbjct: 778 QEGCYIYSGVNYKSGQSMKLSCKLGSSDPGFNQGASFVMNKGLSEYHPISFVAEGDKRNF 837

Query: 852 LLAPLLSLRDESYTVYFDFQS 872
           LLAPL SLRDE YT+YF+ Q+
Sbjct: 838 LLAPLHSLRDEFYTIYFNIQA 858

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435510|ref|XP_002285548.1| PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075776|ref|XP_002304762.1| predicted protein [Populus trichocarpa] gi|222842194|gb|EEE79741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478753|ref|XP_002283032.2| PREDICTED: uncharacterized protein LOC100250068 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448754|ref|XP_004142130.1| PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541181|ref|XP_003539059.1| PREDICTED: uncharacterized protein LOC100781521 [Glycine max] Back     alignment and taxonomy information
>gi|356541912|ref|XP_003539416.1| PREDICTED: uncharacterized protein LOC100783150 [Glycine max] Back     alignment and taxonomy information
>gi|15239944|ref|NP_196799.1| uncharacterized protein [Arabidopsis thaliana] gi|7630051|emb|CAB88259.1| putative protein [Arabidopsis thaliana] gi|26451123|dbj|BAC42665.1| unknown protein [Arabidopsis thaliana] gi|332004451|gb|AED91834.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807309|ref|XP_002871538.1| hypothetical protein ARALYDRAFT_350453 [Arabidopsis lyrata subsp. lyrata] gi|297317375|gb|EFH47797.1| hypothetical protein ARALYDRAFT_350453 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356557388|ref|XP_003546998.1| PREDICTED: uncharacterized protein LOC100815634 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query872
TAIR|locus:2182280861 AT5G12950 [Arabidopsis thalian 0.975 0.988 0.636 2.5e-303
TAIR|locus:2182295865 AT5G12960 [Arabidopsis thalian 0.971 0.979 0.633 9e-299
UNIPROTKB|Q2KGY9633 MGCH7_ch7g196 "Putative unchar 0.582 0.802 0.340 2.5e-72
TAIR|locus:2182280 AT5G12950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2911 (1029.8 bits), Expect = 2.5e-303, P = 2.5e-303
 Identities = 553/869 (63%), Positives = 677/869 (77%)

Query:     7 SIGFFKFLLTFLLIVSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTP 66
             +I    +  +F+L+   + AKECTN   +L+SHTFRS LL SKNE+   ++ SH  HLTP
Sbjct:     8 TIALLLYTSSFVLV---SVAKECTNTPTQLSSHTFRSELLQSKNETLKTELFSHY-HLTP 63

Query:    67 SDDSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLG 126
             +DDSAW SL+PRK+L+EE  DE F+W MLYRK      FK    SG FLK+VSLHDVRL 
Sbjct:    64 ADDSAWSSLLPRKMLKEEA-DE-FAWTMLYRK------FKDSNSSGNFLKDVSLHDVRLD 115

Query:   127 SDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYL 186
              DS HWRAQQTNLEYLLMLDVD L W+FRK A L APG+ YGGWE P  ELRGHFVGHYL
Sbjct:   116 PDSFHWRAQQTNLEYLLMLDVDGLAWSFRKEAGLDAPGDYYGGWERPDSELRGHFVGHYL 175

Query:   187 SASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY 246
             SA+A MWASTHN++LKEKMSA+VSALS CQ++ G+GYLSAFP+  FDR EA+ PVWAPYY
Sbjct:   176 SATAYMWASTHNDTLKEKMSALVSALSECQQKSGTGYLSAFPSSFFDRFEAITPVWAPYY 235

Query:   247 TIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMN 306
             TIHKILAGL+DQY  A N++AL+M T M +YFY RV+NVI+KYS+ERHWQ+LNEE GGMN
Sbjct:   236 TIHKILAGLVDQYKLAGNSQALKMATGMADYFYGRVRNVIRKYSVERHWQSLNEETGGMN 295

Query:   307 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVT 366
             DVLY+L+ IT D K+L+LAHLFDKPCFLG+LA+QADDISGFH+NTHIPIV+GSQ RYE+T
Sbjct:   296 DVLYQLYSITGDSKYLLLAHLFDKPCFLGVLAIQADDISGFHANTHIPIVVGSQQRYEIT 355

Query:   367 GDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVS 426
             GD LHK ISMFFMDI N+SH+YATGGTSV EFW DPKR+A+ L +  EESCTTYNMLKVS
Sbjct:   356 GDLLHKEISMFFMDIFNASHSYATGGTSVSEFWQDPKRMATALQTENEESCTTYNMLKVS 415

Query:   427 RHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSD 486
             R+LFRWTKE++YADYYER+LTNGVLGIQRGT+PG+MIY+LPL  G SK  +YH WGTP D
Sbjct:   416 RNLFRWTKEVSYADYYERALTNGVLGIQRGTQPGLMIYMLPLGKGVSKAVTYHGWGTPYD 475

Query:   487 SFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSW 546
             SFWCCYGTGIESFSKLGDSIYF+E+G  P +Y+ QYISS LDWKS  + ++QKV+PVVSW
Sbjct:   476 SFWCCYGTGIESFSKLGDSIYFQEDGATPALYVTQYISSSLDWKSAGLSISQKVNPVVSW 535

Query:   547 DPYLRVTLTFSSKGSGLT--TSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTW 604
             DPY+RVT T SS   G+   ++LNLRIP WT+S GAK +LNG+ L +P+ GNFLS+ + W
Sbjct:   536 DPYMRVTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVSLNGRPLNVPTSGNFLSIKQKW 595

Query:   605 SSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWI 664
              S D++T++LP+++RTEAI+DDRPEYAS+QAILYGPY+LAGH+  DW IT  A     WI
Sbjct:   596 KSGDQVTMELPMSIRTEAIKDDRPEYASLQAILYGPYLLAGHTSRDWSITTQAKP-GKWI 654

Query:   665 TPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGS 724
             TPIP + NS L+T +Q+ GN  +V +NSNQ+ITM   P+ GT  A+ ATFRL+  D+S  
Sbjct:   655 TPIPETQNSYLVTLSQQSGNVSYVFSNSNQTITMRVSPEPGTQDAVAATFRLV-TDNSKP 713

Query:   725 EFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIA-QGSSVFHLVAGLDGGDR 783
               S     IG+ VMLEPFD PGM+V Q  TD  L V  S  + +G+S F LV+GLDG   
Sbjct:   714 RISGPEGLIGRLVMLEPFDFPGMIVKQ-ATDSSLTVQASSPSDKGASSFRLVSGLDGKLG 772

Query:   784 TVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFV 843
             +VSL  E+ KGCFVY+   L+     +L C S++T+  F  AASF ++ G+ +Y+P+SFV
Sbjct:   773 SVSLRLESKKGCFVYSDQTLKQGTKLRLECGSDATDEKFKEAASFSLKTGMHQYNPMSFV 832

Query:   844 AKGANRNFLLAPLLSLRDESYTVYFDFQS 872
               G  RNF+L+PL SLRDE+Y VYF  Q+
Sbjct:   833 MSGTQRNFVLSPLFSLRDETYNVYFSVQT 861
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2182295 AT5G12960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KGY9 MGCH7_ch7g196 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I0347
hypothetical protein (858 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.1041.1
hypothetical protein (662 aa)
  •     0.455
estExt_fgenesh4_pm.C_LG_VI0086
hypothetical protein (670 aa)
  •     0.449
estExt_fgenesh4_pg.C_LG_X0561
alpha-galactosidase (EC-3.2.1.22) (649 aa)
  •     0.408
gw1.VIII.287.1
annotation not avaliable (630 aa)
  •     0.403
gw1.X.5154.1
annotation not avaliable (619 aa)
  •     0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query872
pfam07944511 pfam07944, DUF1680, Putative glycosyl hydrolase of 1e-165
COG3533589 COG3533, COG3533, Uncharacterized protein conserve 2e-67
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function (DUF1680) Back     alignment and domain information 
 Score =  491 bits (1265), Expect = e-165
 Identities = 196/531 (36%), Positives = 277/531 (52%), Gaps = 28/531 (5%)

Query: 122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEE--PSCELRG 179
           DVRL +DS     QQTN EYLL LD D+L+  FR  A LP     YGGWE+  P    RG
Sbjct: 1   DVRL-TDSFWGDRQQTNREYLLPLDPDRLLHTFRLEAGLPNKAIAYGGWEDEFPGFPFRG 59

Query: 180 HFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALI 239
           H +G +LSA A M AST +  L++++  +V  L+  Q+  G GYL  +P   FDR EA  
Sbjct: 60  HDLGKWLSAVAYMLASTPDPELEKRLDRLVDELAEAQQ--GDGYLGTYPESNFDRNEAGN 117

Query: 240 PVWAP---YYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ 296
             WAP    Y + K++AGL+  Y      +AL + T + ++ Y+ V +V+    +++H  
Sbjct: 118 GRWAPNHELYNLGKLIAGLVAYYQATGKRQALDVATRLADWLYD-VTSVLGDEQMQKHLY 176

Query: 297 TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIV 356
               E GG+N+ L +L+ +T D ++L LA  F     L  LA   D + G H NT I   
Sbjct: 177 P---EHGGINEALVELYELTGDKRYLDLAKRFIHNRGLDPLAYGQDHLPGRHQNTAIGHA 233

Query: 357 I-GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG-EFWSDPKRLASNLDSNTE 414
           + G+   YE TGD      + FF + V + H Y TGG     E +  P  L +       
Sbjct: 234 VRGAADLYEETGDDALLKAAEFFWNNVVTRHMYVTGGNGSRHEHFGPPYDLPN--RLAYC 291

Query: 415 ESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSK 474
           E+C +YNMLK++R +  WT +  YADYYER+L N +L  Q   + G+  Y  PL  G  +
Sbjct: 292 ETCASYNMLKLTRRMLEWTPDAKYADYYERALYNHILAGQSP-DGGMFFYFNPLESGPKR 350

Query: 475 ERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQI 534
            R    + TP DS WCC G G E+ +K GD IY   +    G+Y+  YI S  DWK    
Sbjct: 351 LR--WGYSTPWDSCWCCPGNGAETHAKFGDYIYTHSD---DGLYVNLYIPSTADWKLKGG 405

Query: 535 VVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQ-DLPLPS 593
            V  + +    WD   +V LT  +      T L LRIP W +  GA  T+NG+  +  P 
Sbjct: 406 EVTLRQETNYPWDG--QVRLTVKTAKPAEFT-LYLRIPGWAA--GATLTVNGKPVVVQPK 460

Query: 594 PGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 644
              +LS+T+ W   D++ + LP+ +R EA     P+ A+  A+L GP VL 
Sbjct: 461 SDGYLSITREWKKGDRVELTLPMPVRLEAANPLVPDDANKVAVLRGPLVLC 511

The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One members of this family is annotated as a possible arabinosidase, but no references were found to back this. These proteins are related to a large family of glycosyl hydrolases. Length = 511
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 872
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 100.0
COG3533589 Uncharacterized protein conserved in bacteria [Fun 100.0
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 99.68
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 99.34
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.74
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.13
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 97.8
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 97.73
COG1331667 Highly conserved protein containing a thioredoxin 97.62
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 97.6
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.47
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.4
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.36
COG1331667 Highly conserved protein containing a thioredoxin 97.11
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.66
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.59
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 96.47
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 96.47
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 96.36
COG3533589 Uncharacterized protein conserved in bacteria [Fun 96.13
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 95.94
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 95.4
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 95.2
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 95.05
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 94.8
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 94.77
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 94.72
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 94.39
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 93.97
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 93.9
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 93.78
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 91.61
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 91.6
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 91.46
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 89.74
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 89.29
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 88.9
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 88.59
KOG2787403 consensus Lanthionine synthetase C-like protein 1 86.18
KOG2429622 consensus Glycosyl hydrolase, family 47 [Carbohydr 81.42
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.7e-110  Score=974.93  Aligned_cols=499  Identities=37%  Similarity=0.644  Sum_probs=456.9

Q ss_pred             CeEecCCCchHHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCCC--CCCcCcccchhhHHHHHHHHHHHhcCCh
Q 002872          122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWE--EPSCELRGHFVGHYLSASALMWASTHNE  199 (872)
Q Consensus       122 ~VrL~~~~~~~~~~~~~~~yLl~ld~drlL~nFR~~AGl~~~g~~ygGWE--~~~~~l~Gh~~GhyLsA~A~~~a~t~D~  199 (872)
                      +|||++ ++|+++|+++++|++.+++|||+++||.+|||+.++.++||||  +++..++||++||||||+|++|+.++|+
T Consensus         1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~   79 (520)
T PF07944_consen    1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP   79 (520)
T ss_pred             CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence            699995 7999999999999999999999999999999999999999999  8899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccc----cchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002872          200 SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEALRMTTWMV  275 (872)
Q Consensus       200 ~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~p----yy~~HkI~aGLld~y~~tG~~~aL~va~~~a  275 (872)
                      +|++|++++|+.|++||+  +||||+++++..   ..+.+..|+|    +|++|||++||+|+|++|||+++|+|++|++
T Consensus        80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a  154 (520)
T PF07944_consen   80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA  154 (520)
T ss_pred             HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            999999999999999999  999999998753   2245678999    9999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccch--hhccCCCCCCCcccCCc
Q 002872          276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGFHSNTHI  353 (872)
Q Consensus       276 d~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~--l~~~~D~l~g~Hanthi  353 (872)
                      ||+.++....    ..+..+.++.+|+|||+++|+|||++|||++||+||++|++..++++  +..+.|.+++.|+|+++
T Consensus       155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~  230 (520)
T PF07944_consen  155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI  230 (520)
T ss_pred             HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence            9996554432    22233344567999999999999999999999999999999988888  88889999999999999


Q ss_pred             chhh-------HHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCC---CCCCCCcccccCCCCCcccccchHHHH
Q 002872          354 PIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESCTTYNML  423 (872)
Q Consensus       354 P~~~-------G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~---E~f~~p~~L~~~l~~~~~ETCas~nml  423 (872)
                      |.++       |++++|++|||+.|++++++||+.|+++|||+|||+|++   |+|++++++++  ...++|||++||||
T Consensus       231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~  308 (520)
T PF07944_consen  231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM  308 (520)
T ss_pred             eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence            9888       999999999999999999999999999999999999998   99999999987  45569999999999


Q ss_pred             HHHHHHhcccCCchhHHHHHHHHhhhhcccCCCCCCCcEEEeccCCCCCCCcccccCCCCCCCCccccCCCCCCcccccc
Q 002872          424 KVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLG  503 (872)
Q Consensus       424 kl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~~t~~~~F~CC~gtg~e~~akl~  503 (872)
                      |++++||++|||++|+|+|||++||++||+|++ |+++++|+|||+++..+... ..+++++++||||+||++|+++||+
T Consensus       309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~  386 (520)
T PF07944_consen  309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP  386 (520)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence            999999999999999999999999999999997 99999999999987755321 3567788999999999999999999


Q ss_pred             cceEEeecCCCCcEEEEEeeCcEEEEeeCc--eEEEEEECCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcE
Q 002872          504 DSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAK  581 (872)
Q Consensus       504 ~~IY~~~~~~~~~LyVnLYipStl~~~~~g--v~v~q~t~~~yp~d~~~~VtltV~~~~~~~~ftL~LRIP~Wa~~~~~~  581 (872)
                      ++||++++   ++||||||+||+++|+.+|  |+|+|+|+  |||++  +|+|+|++. ++.+|+|+||||+||+  +++
T Consensus       387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~  456 (520)
T PF07944_consen  387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--GAT  456 (520)
T ss_pred             hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--CcE
Confidence            99999985   6999999999999999988  77788777  89998  899999765 5889999999999998  799


Q ss_pred             EEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeee
Q 002872          582 ATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA  644 (872)
Q Consensus       582 v~VNG~~-~~~~~~ggY~~I~R~Wk~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA  644 (872)
                      |+|||++ .....++||++|+|+|++||+|+|+|||++|++++++..+...+++||+|||||||
T Consensus       457 i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a  520 (520)
T PF07944_consen  457 IRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA  520 (520)
T ss_pred             EEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence            9999999 55567999999999999999999999999999999666666688999999999998

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query872
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 1e-08
 Identities = 89/689 (12%), Positives = 182/689 (26%), Gaps = 236/689 (34%)

Query: 55  KQIHSHND---HLTPS---D-DSAWLSLMPRKILREEEQDELFSWAMLYRKIKNPGQ--- 104
           +  + + D       +   + D   +  MP+ IL +EE D +          K+      
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-------MSKDAVSGTL 65

Query: 105 --FKVPERSGE-----FLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLD-VDKLVWN--- 153
             F       E     F++EV   + +     +    +Q ++   + ++  D+L +N   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQ 124

Query: 154 -FRK--TARLPAPGEPYGGWEEPSCELR-GHFVGHY---------LSASALMWASTHNES 200
            F K   +RL    +PY    +   ELR    V            ++          +  
Sbjct: 125 VFAKYNVSRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-----LSYK 175

Query: 201 LKEKMSAVVS--ALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQ 258
           ++ KM   +    L  C            P    + L+ L       Y I        D 
Sbjct: 176 VQCKMDFKIFWLNLKNCNS----------PETVLEMLQKL------LYQIDPNWTSRSDH 219

Query: 259 -YTYADNAEAL--RMTTWMVEYFYNR-------VQNVIKKYSIERHWQTLNEEAGGMNDV 308
                    ++   +   +    Y         VQN        + W   N         
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSC------ 266

Query: 309 LYKLFCITQD-----------PKHLMLAHL---FDKPCFLGLLAL-----------QADD 343
             K+   T+              H+ L H            LL             +   
Sbjct: 267 --KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 344 ISGFHSNTHIPIVIGSQMR--------YE-VTGDQLHKTISMF----------------- 377
            +    +     +I   +R        ++ V  D+L   I                    
Sbjct: 325 TNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 378 -FMDIVN-SSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE 435
            F    +  +   +         W D      +           Y++++      +  KE
Sbjct: 380 VFPPSAHIPTILLSL-------IWFDVI---KSDVMVVVNKLHKYSLVE------KQPKE 423

Query: 436 IAYADYYERSLTNGVLGIQRGTEPGV---MI--YLLPLAPGSSKERSYHHWG---TPSDS 487
              +      L    L ++   E  +   ++  Y +P        +++          D 
Sbjct: 424 STIS-IPSIYL---ELKVKLENEYALHRSIVDHYNIP--------KTFDSDDLIPPYLDQ 471

Query: 488 FWCCYGTGIESFSKLGDSIY-------FEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKV 540
           ++  +         +G   +        E    +  V++         +      + QK+
Sbjct: 472 YFYSH---------IG---HHLKNIEHPERMTLFRMVFL------DFRF------LEQKI 507

Query: 541 DPVVSWDPYLRVTLTFSSKGSGLTTSLNLRI-PTWTSSNGAKATLNGQDLPLPSPGNFLS 599
                       +  +++ GS L T   L+    +   N  K       +      +FL 
Sbjct: 508 ---------RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-----LDFLP 553

Query: 600 V--TKTWSSDDKLTIQLPLTLRTEAIQDD 626
                   S     +++ L    EAI ++
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query872
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 99.83
1wd3_A482 Alpha-L-arabinofuranosidase B; beta-sandwich, beta 99.81
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 99.68
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 99.31
1wd3_A482 Alpha-L-arabinofuranosidase B; beta-sandwich, beta 99.21
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 99.13
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 98.7
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.69
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.56
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.52
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.45
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 98.37
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 98.34
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 98.16
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.12
1nc5_A373 Hypothetical protein YTER; structural genomics, he 98.09
3k11_A445 Putative glycosyl hydrolase; structural genomics, 98.07
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.94
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.85
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.8
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.71
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.67
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.62
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.39
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.15
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 96.19
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 96.05
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.63
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 95.36
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 95.31
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 94.02
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 93.81
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 92.66
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 92.16
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 92.03
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 91.79
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 91.56
1g87_A614 Endocellulase 9G; endoglucanase, cellulose binding 91.38
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 91.28
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 90.9
1tf4_A605 T. fusca endo/EXO-cellulase E4 catalytic domain an 90.83
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 90.31
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 90.25
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 89.97
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 87.98
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 85.15
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 82.32
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 81.91
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
Probab=99.83  E-value=8.7e-21  Score=186.72  Aligned_cols=112  Identities=21%  Similarity=0.327  Sum_probs=100.8

Q ss_pred             CcccccCCCCCCCceEEeecCCceEEEecCCCCCCCceEEEeeccCCCC-CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002872          734 GKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGD-RTVSLESETYKGCFVYTAVNLQSSESTKLG  812 (872)
Q Consensus       734 g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~-g~vsles~~~pg~~~~~~~~~~~g~~~~l~  812 (872)
                      ++.|+|+++++|++||||++..+  ++++++...+|++|++||||++.+ |+|||||+++||+|||+.     |..|+|+
T Consensus         8 ~~~vsl~S~n~p~~ylRh~~~~~--~~~~~~~~~~datF~vvpGLa~~~~g~VSfES~n~Pg~yLRh~-----~~~l~L~   80 (157)
T 3kmv_A            8 ITKAKFQSYNYPNMYIRHANFDA--RIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHS-----NYDLSLE   80 (157)
T ss_dssp             --CBEEEESSSTTCEEEEETTEE--EEESSCSSGGGGCEEEEECSSCCSTTEEEEEESSSTTEEEEEE-----TTEEEEE
T ss_pred             CccEEEEecCCCCcEEEEeCCeE--EEccCCCCccCceEEEeCCcCCCCCCEEEEEECCCCCcEEEEe-----CCEEEEe
Confidence            45789999999999999997765  667777778999999999998865 899999999999999996     8999999


Q ss_pred             eecCCCccccccccceecccCCCccCCccEEEecCCCcchhc
Q 002872          813 CISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLA  854 (872)
Q Consensus       813 ~~~~~~~~~f~~~asF~~~~gl~~y~piSf~a~g~~~~~ll~  854 (872)
                      +  .++++.|+++|+|..++||++..++||++...++.||..
T Consensus        81 ~--~~~s~~f~~dATF~~~~GLa~~~~vSfeS~n~Pg~yLrh  120 (157)
T 3kmv_A           81 K--NDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRH  120 (157)
T ss_dssp             E--CCSCHHHHHTTCEEEEECSSCTTSEEEEESSSTTEEEEE
T ss_pred             c--cCCCCCccCCceEEEccCccCCCcEEEEEEcCCCeEEEE
Confidence            6  578889999999999999999999999999999999976
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A* Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A* Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query872
d1wd3a2162 Alpha-L-arabinofuranosidase B (AbfB), C-terminal d 99.64
d1wd3a2162 Alpha-L-arabinofuranosidase B (AbfB), C-terminal d 99.33
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 98.48
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.81
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.73
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.34
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.29
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 96.98
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 96.04
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 96.04
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 95.96
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 95.93
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 95.82
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 95.78
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 94.91
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 94.9
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 94.52
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 94.5
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 94.2
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 92.55
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 92.38
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 92.13
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 91.87
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 90.65
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 89.54
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 80.71
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain {Aspergillus kawachii [TaxId: 40384]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: AbfB domain
family: AbfB domain
domain: Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain
species: Aspergillus kawachii [TaxId: 40384]

Probab=99.64  E-value=1.6e-16  Score=154.40  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             ccCCCCccc--ccCCCCCCCceEEeecCCceEEEecCCC---CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEeecc
Q 002872          729 LNDFIGKSV--MLEPFDSPGMLVIQHETDDELVVTDSFI---AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNL  803 (872)
Q Consensus       729 p~~~~g~~v--~l~p~~~p~~~v~~~~~~~~l~v~~~~~---~~~~s~f~~vpgl~g~~g~vsles~~~pg~~~~~~~~~  803 (872)
                      |+-..|+.+  +++..+.|++||||++....|.+....+   -..|++|+|||||++ +|+|||||+++||.||||.   
T Consensus         5 ~~l~~G~~~slr~~s~~y~~rylrH~~~~~~l~~v~~~s~~~~k~dasf~v~~Gl~~-~~~vSfES~n~Pg~yLRH~---   80 (162)
T d1wd3a2           5 PSFTSGEVVSLRVTTPGYTTRYIAHTDTTVNTQVVDDDSSTTLKEEASWTVVTGLAN-SQCFSFESVDTPGSYIRHY---   80 (162)
T ss_dssp             SCCCTTCEEEEEECSTTCTTEEEEEETTEEEEEECCTTSCHHHHHHTCEEEEECSSC-TTSEEEEESSSTTEEEEEE---
T ss_pred             CccccCceEEEEEeCCCCCceEEEEcCCcEEEEeccCCcchhhcccceEEEccCcCC-CCeEEEEEcCCCCcEEEEE---
Confidence            334456644  6689999999999997777665432222   246899999999998 7999999999999999996   


Q ss_pred             CCCCcEEEEeecCCCccccccccceecccCCCccCCccEEEecCCCcchhcc
Q 002872          804 QSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP  855 (872)
Q Consensus       804 ~~g~~~~l~~~~~~~~~~f~~~asF~~~~gl~~y~piSf~a~g~~~~~ll~p  855 (872)
                        +..|+|. + +++++.|.++|||..++|| ....+||+...-+..||.+=
T Consensus        81 --n~~l~L~-~-~d~s~~F~~DATF~~~~gl-~~~g~SfeS~n~p~~YlRH~  127 (162)
T d1wd3a2          81 --NFELLLN-A-NDGTKQFHEDATFCPQAAL-NGEGTSLRSWSYPTRYFRHY  127 (162)
T ss_dssp             --TTEEEEE-E-CCCCHHHHHHTCEEEEECT-TSSSEEEEESSSTTCEEEEE
T ss_pred             --CCEEEEe-c-CCCccccccCceEEEeeCc-CCCceEEEEecCCCceEEee
Confidence              7899999 5 5888999999999999999 55789999999998888543
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain {Aspergillus kawachii [TaxId: 40384]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure