Citrus Sinensis ID: 002882

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-

MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNDSSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVDYDDDEDDEDYRPPPRKQSETLEEDEGTMDSLRLKRKSASSKEKEPELVKKQRLSKNPKSRDSVFAALCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQEDSSNSINSSNNSSSDEEIHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT

ccccccccccccccccEEEEEEccccccEEcccEEEEEEEEcccccEEEEEEEccccccEEEEEccccccHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccccccccccccHHHHcccccccEEEEEcccHHHHHHHHHHEEccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccEEEEEEEccccccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccccHHHcccEEEEEEcccccccEEEEccccccHHHHHHHHHHHHcccccccccHcccccccccccccccccHccHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHEHHcccccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHEHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccc

mgaqeksqananpmqrVKVYrlnddgkwddqgtghvtvdsMERSEELCLFVIDEEDNETILLhrispddiyrkqedtiiswrdpeystelalsfqeptgcsyiwdNICNvqrnlnfnslnSETFHSMnselrelppielstlPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIillnspqifeKIFGDELMMDIIGsleydpdvphvqhhRNFLkehvvfkeaipirdplvlskIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFArlrspttleESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVItascpqegiaqsassggrvestkpeILSNICELLCFCvlhhpyrikcNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQClessgtnnnvnsvdprkrndeRALEKEEedyfndssdeedtasashtqrtqaqpvlsngvaasysslsprsgglvdydddeddedyrppprkqsetleedegtmDSLRLKRksasskekepelvkkqrlsknpksrDSVFAALCSTLSqavlpskknassmqltphtddrskgvgeqedssnsinssnnsssdeeihrdkeptasrscsdcmhggsdnrqlsgedcalippksspemavngt

mgaqeksqananpmqrVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILlhrispddiyrkQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANlnsiihgnNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAqsassggrvesTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLEssgtnnnvnsvdprkrndERALEKEeedyfndssdeEDTASAShtqrtqaqpvlsngvaasysslsprsgglvdydddeddedyrppprkqsetleedegtmdslrlkrksasskekepelvkkqrlsknpksrDSVFAALCSTLSQavlpskknassmqltphtddrskgvgeqedssnsinssnnsssdeeiHRDKEPTASRSCSDCMHGgsdnrqlsgedcalippksspemavngt

MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCnfllnnvvdkvlllTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNdssdeedtasasHTQRTQAQPVLSNGVAASYSSLSPRSGGLVdydddeddedyRPPPRKQSETLEEDEGTMDslrlkrksasskekePELVKKQRLSKNPKSRDSVFAALCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQEDssnsinssnnsssDEEIHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT

******************VYRL*****W*****GHVTV*****SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFH*****LRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP*******************EILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCL*******************************************************************************************************************************************AALC**************************************************************************************************

******************VYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNV*******************ELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTT**ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP*************VESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKY*****************************************************************************************************************************************************************************************************************************************************

***********NPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG*************TKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDER*****************************AQPVLSNGVAASYSSLSPRSGGLVDY************************************************************SVFAALCSTLSQAVLP****************************************************************NRQLSGEDCALIPPK**********

*************MQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLN*ETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQ******ASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLE*******************************************************************************************************************************************************************************************************************************CA**P************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		871	2.2.26 [Sep-21-2011]
Q5SP90		818	Serine/threonine-protein	yes	no	0.737	0.784	0.378	1e-124
Q4S6U8		818	Serine/threonine-protein	N/A	no	0.748	0.797	0.368	1e-120
Q6INN7		822	Serine/threonine-protein	N/A	no	0.735	0.779	0.375	1e-118
Q6P2K6		820	Serine/threonine-protein	yes	no	0.750	0.797	0.362	1e-118
Q6IN85		833	Serine/threonine-protein	yes	no	0.750	0.785	0.355	1e-116
Q801Q7		820	Serine/threonine-protein	N/A	no	0.768	0.815	0.351	1e-116
Q7ZX60		820	Serine/threonine-protein	N/A	no	0.768	0.815	0.352	1e-116
Q922R5		820	Serine/threonine-protein	no	no	0.761	0.808	0.351	1e-116
Q6DFT3		820	Serine/threonine-protein	no	no	0.768	0.815	0.353	1e-115
Q5MIZ7		849	Serine/threonine-protein	no	no	0.761	0.780	0.340	1e-108

>sp\|Q5SP90\|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1	Back alignment and function desciption

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/684 (37%), Positives = 406/684 (59%), Gaps = 42/684 (6%)

Query: 15  QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ 74
           +RVKVY LN+D +WDD+GTGHV+   +ER + + L V  E D   +L  +I+P+  Y+KQ
Sbjct: 6   RRVKVYTLNEDRQWDDRGTGHVSSAYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQ 65

Query: 75  EDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQ--------RNLNFNSLNSETFHS 126
           +DT+I W + E + +LALSFQE  GC  IW+ IC VQ             +    E F  
Sbjct: 66  QDTLIVWSEAE-NYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQELIDESEEERFDD 124

Query: 127 MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 184
           M+S   ELPP ELS L  + + V  S +   +R  +L L   ++ + RKL++LFR+CEDL
Sbjct: 125 MSSPGLELPPCELSRLEEVAELVA-SSLPSPLRREKLALALENEGYIRKLLELFRVCEDL 183

Query: 185 ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 244
           EN +GLH ++ IIKGI LLN   +FE +F +E +MD+IG LE+DP +P  + HR FL   
Sbjct: 184 ENREGLHHLYDIIKGIFLLNRTALFEVMFSEECIMDVIGCLEFDPSLPQPRRHREFLTTT 243

Query: 245 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVL--ARVLDEATVANLNSIIHGNNAYVVSL 302
             FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct: 244 ARFKEVIPISDPELRQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query: 303 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362
           L+DD  F+ ELFA+L    T ++ +  LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct: 304 LQDDEKFLTELFAQLTDEATDDDKRHELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query: 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 417
             +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct: 364 QALEVILGMDDVQVRGAATDIFSYLVEYNPSMVREFVMQESQQNDDDILLINLIIEHMIC 423

Query: 418 DFGEDM--HCQFLEILRSLLDS----YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 471
           D   ++    Q + +LR+L+D      T +  ++   +  FY+  +  L   + A+  +E
Sbjct: 424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLSFFYKHCMHVLSAPLLANTTEE 483

Query: 472 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRRE 530
             ++        +    ++L+ I ELL FCV HH Y IK N+++N +++ +VL+LT  + 
Sbjct: 484 KPSKD-------DFQTCQLLALIVELLTFCVEHHTYHIK-NYIINKDILRRVLVLTASQH 535

Query: 531 KYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590
            +L + A+RF+R I+   DE    + ++N L +P+V AF+ NG+RYNL+NSA++E+FEY+
Sbjct: 536 AFLALCALRFMRKIIGLKDEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYV 595

Query: 591 RKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSV-----DPR 645
           R E++KSL  +I++++W  L + +Y+ +    K++YEQ  E    N  ++S+     + R
Sbjct: 596 RVEDVKSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQQRERQD-NPKLDSMRSILRNHR 654

Query: 646 KRNDERALEKEEEDYFNDSSDEED 669
            R D R LE EEE +FN  +DEED
Sbjct: 655 FRRDARTLEDEEEMWFN--TDEED 676

Regulatory subunit of serine/threonine-protein phosphatase 4.
Danio rerio (taxid: 7955)

>sp\|Q4S6U8\|PP4R3_TETNG Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1 PE=3 SV=1	Back alignment and function description

>sp\|Q6INN7\|PP4R3_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis GN=smek1 PE=2 SV=1	Back alignment and function description

>sp\|Q6P2K6\|P4R3A_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus GN=Smek1 PE=1 SV=1	Back alignment and function description

>sp\|Q6IN85\|P4R3A_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=SMEK1 PE=1 SV=1	Back alignment and function description

>sp\|Q801Q7\|P4R3B_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-B OS=Xenopus laevis GN=smek2-b PE=2 SV=1	Back alignment and function description

>sp\|Q7ZX60\|P4R3A_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-A OS=Xenopus laevis GN=smek2-a PE=2 SV=1	Back alignment and function description

>sp\|Q922R5\|P4R3B_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Mus musculus GN=Smek2 PE=2 SV=2	Back alignment and function description

>sp\|Q6DFT3\|PP4R3_XENTR Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2 SV=1	Back alignment and function description

>sp\|Q5MIZ7\|P4R3B_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Homo sapiens GN=SMEK2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		871
255556336		884	conserved hypothetical protein [Ricinus	0.996	0.981	0.816	0.0
224108663		861	predicted protein [Populus trichocarpa]	0.979	0.990	0.805	0.0
225431916		885	PREDICTED: serine/threonine-protein phos	0.998	0.983	0.800	0.0
224101583		878	predicted protein [Populus trichocarpa]	0.993	0.985	0.798	0.0
356521791		880	PREDICTED: serine/threonine-protein phos	0.996	0.986	0.764	0.0
356564712		881	PREDICTED: serine/threonine-protein phos	0.996	0.985	0.760	0.0
356521793		897	PREDICTED: serine/threonine-protein phos	0.996	0.967	0.75	0.0
356556026		869	PREDICTED: serine/threonine-protein phos	0.987	0.989	0.747	0.0
449432910		888	PREDICTED: serine/threonine-protein phos	0.997	0.978	0.727	0.0
356532525		867	PREDICTED: serine/threonine-protein phos	0.983	0.988	0.744	0.0

>gi\|255556336\|ref\|XP_002519202.1\| conserved hypothetical protein [Ricinus communis] gi\|223541517\|gb\|EEF43066.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1432 bits (3707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/887 (81%), Positives = 794/887 (89%), Gaps = 19/887 (2%)

Query: 1   MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI 60
           MGAQ+KSQA +NPMQRVKVYRLN+DGKWDDQGTGHVTVD +ERSEEL L+VIDEEDNET+
Sbjct: 1   MGAQDKSQATSNPMQRVKVYRLNEDGKWDDQGTGHVTVDYLERSEELGLYVIDEEDNETL 60

Query: 61  LLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNLNFNSLN 120
           LLHRI PDDIYRKQEDTIISWRDPE+STELALSFQE TGCSYIWD+ICNVQR+L F++LN
Sbjct: 61  LLHRIIPDDIYRKQEDTIISWRDPEFSTELALSFQETTGCSYIWDHICNVQRSLQFSTLN 120

Query: 121 SETFHSMNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRI 180
           +ETFHSMNSELRELP +ELSTLPLILKTV+ESGIADQMRLTELILNDQ+FFRKLMDLFRI
Sbjct: 121 NETFHSMNSELRELPAVELSTLPLILKTVSESGIADQMRLTELILNDQNFFRKLMDLFRI 180

Query: 181 CEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNF 240
           CEDL+N DGLHMIFKI++GII LNSPQIFEKIFGDEL+MDIIGSLEYDP++ H+QHHRNF
Sbjct: 181 CEDLDNTDGLHMIFKIVRGIIFLNSPQIFEKIFGDELIMDIIGSLEYDPEIAHIQHHRNF 240

Query: 241 LKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVV 300
           LKEHVVFKEAIPI+DP+VLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNA VV
Sbjct: 241 LKEHVVFKEAIPIKDPVVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAVVV 300

Query: 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEG 360
           SLLKDDSTFIQELFARLRSPTT  ESKKNLV+FLHEFC LSKSLQMVQQLRLFRDL+NEG
Sbjct: 301 SLLKDDSTFIQELFARLRSPTTSAESKKNLVYFLHEFCSLSKSLQMVQQLRLFRDLVNEG 360

Query: 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG 420
           IFDI+T+ALQ QDKKL+LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG
Sbjct: 361 IFDIITEALQDQDKKLILTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG 420

Query: 421 EDMHCQFLEILRSLLDSYTLSG--AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA- 477
           EDMHCQFLEILRSLLDSYTLSG  AQRD+IIEIFYEKHLGQLIDVITASCP E I QS+ 
Sbjct: 421 EDMHCQFLEILRSLLDSYTLSGAHAQRDSIIEIFYEKHLGQLIDVITASCPVESIVQSSD 480

Query: 478 -SSGG--RVE---STKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREK 531
            SSG   RVE   S KPEILSNICELLCFCVLHHPYRIKCNFLLNN++DKVL+LTRRREK
Sbjct: 481 RSSGSNRRVENQNSVKPEILSNICELLCFCVLHHPYRIKCNFLLNNIIDKVLMLTRRREK 540

Query: 532 YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591
           YLVVAAVRFVRTILSRHDEHL NHFVK+NLLKPIVDAFV NGNRYNLL+SA+LELFE+IR
Sbjct: 541 YLVVAAVRFVRTILSRHDEHLTNHFVKHNLLKPIVDAFVGNGNRYNLLHSAILELFEHIR 600

Query: 592 KENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDER 651
           KENLK L+KYIVDSFWN+LV FE+LAS+ +FKVKYEQCLE+  T  +  ++DPR+RNDER
Sbjct: 601 KENLKVLIKYIVDSFWNELVKFEHLASIQAFKVKYEQCLENCVTKISGGTLDPRRRNDER 660

Query: 652 ALEKEEEDYFNDSSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVDYDDDED 711
           ALEKEEE+YFN+ SDEEDTASA H +R Q +  +SNGVAASY SLS RSGGLVDY DDED
Sbjct: 661 ALEKEEEEYFNEDSDEEDTASALHAKRVQPESSISNGVAASYPSLSSRSGGLVDYADDED 720

Query: 712 DEDYRPPPRKQSETLEEDEGTMDSLRLKRKSASSKEKEPELVKKQRLSKNPKSRDSVFAA 771
           DEDYRPPP+KQSE+LEEDEGTM+SL+LKRK   SK+KE E  KKQRL K+ KSR+SVFAA
Sbjct: 721 DEDYRPPPKKQSESLEEDEGTMESLKLKRK-LPSKDKESEAAKKQRLGKHSKSRESVFAA 779

Query: 772 LCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQED-------SSNSINSSNNSSSDEE 824
           LCSTLSQAVLPSKK A S+ +     D +KG+ E          S +  +SSNN    EE
Sbjct: 780 LCSTLSQAVLPSKKTAGSVHIISSPADGNKGLCEDSHQPKEPAISRSCCDSSNNLR--EE 837

Query: 825 IHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT 871
            HR+KEP ASRSCSDC+H  S+N QLSGED  LIPPKSSPEM VNG+
Sbjct: 838 NHREKEPAASRSCSDCLHSTSENGQLSGEDGPLIPPKSSPEMTVNGS 884

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224108663\|ref\|XP_002314928.1\| predicted protein [Populus trichocarpa] gi\|222863968\|gb\|EEF01099.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225431916\|ref\|XP_002276905.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224101583\|ref\|XP_002312340.1\| predicted protein [Populus trichocarpa] gi\|222852160\|gb\|EEE89707.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521791\|ref\|XP_003529534.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356564712\|ref\|XP_003550593.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356521793\|ref\|XP_003529535.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356556026\|ref\|XP_003546328.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449432910\|ref\|XP_004134241.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356532525\|ref\|XP_003534822.1\| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		871
UNIPROTKB\|F6R1L1		820	SMEK1 "Uncharacterized protein	0.734	0.780	0.369	3e-112
MGI\|MGI:1915984		820	Smek1 "SMEK homolog 1, suppres	0.734	0.780	0.367	3e-112
UNIPROTKB\|F1SD90		820	SMEK1 "Uncharacterized protein	0.734	0.780	0.367	3.8e-112
UNIPROTKB\|F1NPW9		844	SMEK1 "Uncharacterized protein	0.734	0.758	0.367	2.1e-111
UNIPROTKB\|G3V5Z3		706	SMEK1 "Uncharacterized protein	0.734	0.906	0.367	2.9e-110
UNIPROTKB\|Q6IN85		833	SMEK1 "Serine/threonine-protei	0.443	0.463	0.41	4.9e-110
MGI\|MGI:2144474		820	Smek2 "SMEK homolog 2, suppres	0.515	0.547	0.356	8e-110
UNIPROTKB\|Q5MIZ7		849	SMEK2 "Serine/threonine-protei	0.515	0.528	0.356	1.3e-107
UNIPROTKB\|E1BFZ3		767	SMEK2 "Uncharacterized protein	0.515	0.585	0.354	2.5e-100
FB\|FBgn0024555		980	flfl "falafel" [Drosophila mel	0.727	0.646	0.342	3.2e-100

UNIPROTKB\|F6R1L1 SMEK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

 Score = 1090 (388.8 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
 Identities = 249/674 (36%), Positives = 388/674 (57%)

Query:    15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ 74
             +RVKVY LN+D +WDD+GTGHV+   +ER + + L V  E D   +L  +I+P+  Y+KQ
Sbjct:     6 RRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQ 65

Query:    75 EDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQR---NLNF-----NSLNSETFHS 126
             +DT+I W + E + +LALSFQE  GC  IW+ IC VQ    +++      +    E F  
Sbjct:    66 QDTLIVWSEAE-NYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFDD 124

Query:   127 MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 184
             M+S   ELP  ELS L  I + V  S +   +R  +L L   ++ + +KL++LF +CEDL
Sbjct:   125 MSSPGLELPSCELSRLEEIAELVASS-LPSPLRREKLALALENEGYIKKLLELFHVCEDL 183

Query:   185 ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 244
             ENI+GLH +++IIKGI LLN   +FE +F +E +MD+IG LEYDP +   + HR FL + 
Sbjct:   184 ENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKT 243

Query:   245 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLAR--VLDEATVANLNSIIHGNNAYVVSL 302
               FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct:   244 AKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query:   303 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362
             L++D  F+ +LFA+L    T EE ++ LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct:   304 LQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query:   363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 417
               +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct:   364 PALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEHMIC 423

Query:   418 DFGEDMH--CQFLEILRSLLDSYT-LSGAQRDTIIEI--FYEKHLGQLIDVITASCPQEG 472
             D   ++    Q + +LR+L+D    L+ A +    E   F+ KH    + V+TA      
Sbjct:   424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHC---MHVLTAPLLANT 480

Query:   473 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCXXXXXXXXXXXXXXTRRREKY 532
                  S     +    ++L+ + ELL FCV HH Y IK                  +  +
Sbjct:   481 TEDKPSKD---DFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAF 537

Query:   533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592
             L + A+RF R I+   DE    + +K+ L +P+V AF+ NG+RYNL+NSA++E+FE+IR 
Sbjct:   538 LALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRV 597

Query:   593 ENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTN--NNVNSV--DPRKRN 648
             E++KSL  ++V+++W  L + +Y+ +    K+++EQ  E       +++ S+  + R R 
Sbjct:   598 EDIKSLTAHVVENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRR 657

Query:   649 DERALEKEEEDYFN 662
             D R LE EEE +FN
Sbjct:   658 DARTLEDEEEMWFN 671

GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA

GO:0030289 "protein phosphatase 4 complex" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI\|MGI:1915984 Smek1 "SMEK homolog 1, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SD90 SMEK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NPW9 SMEK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V5Z3 SMEK1 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6IN85 SMEK1 "Serine/threonine-protein phosphatase 4 regulatory subunit 3A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2144474 Smek2 "SMEK homolog 2, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5MIZ7 SMEK2 "Serine/threonine-protein phosphatase 4 regulatory subunit 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BFZ3 SMEK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

FB\|FBgn0024555 flfl "falafel" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_X0555	hypothetical protein (862 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		871
pfam04802		193	pfam04802, SMK-1, Component of IIS longevity pathw	9e-92

>gnl\|CDD\|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1	Back alignment and domain information

 Score =  287 bits (736), Expect = 9e-92
 Identities = 97/193 (50%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 165 LNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGS 224
           L ++D+  KL+ LF +CEDLEN+D LH++  I+K +ILLN  QI E I  DE +M ++G 
Sbjct: 1   LENEDYIPKLIPLFHMCEDLENLDDLHLLCNIVKTLILLNDSQILEIILSDENIMGVVGC 60

Query: 225 LEYDPDVPHVQ-HHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEA 283
           LEYDP+ P  + +HR FL ++  FKE IPI++P +  KIHQTYR+ YLKDVVL RVLD+ 
Sbjct: 61  LEYDPEFPQPKANHRQFLTQNAKFKEVIPIKNPELRQKIHQTYRLQYLKDVVLPRVLDDN 120

Query: 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS 343
           T + LNS I  N   +V+LL+DD  F++ELFA L   +T +E +++LV FLHEFC ++KS
Sbjct: 121 TFSTLNSFIFFNQVEIVTLLQDDEKFLEELFALLTDSSTSDERRRDLVLFLHEFCNIAKS 180

Query: 344 LQMVQQLRLFRDL 356
           LQ   +   F+ L
Sbjct: 181 LQPQSRSTFFKTL 193

SMK-1 is a component of the IIs longevity pathway which regulates aging in C.elegans. Specifically, SMK-1 influences DAF-16-dependant regulation of the aging process by regulating the transcriptional specificity of DAF-16 activity. SMK-1 plays a role in longevity by modulating the transcriptional specificity of DAF-16. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		871
KOG2175		458	consensus Protein predicted to be involved in carb	100.0
PF04802		193	SMK-1: Component of IIS longevity pathway SMK-1; I	100.0
cd00835		122	RanBD Ran-binding domain. Ran-binding domain; This	98.44
PF00638		122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	98.12
cd00837		104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	97.5
smart00160		130	RanBD Ran-binding domain. Domain of apporximately	97.49
PF00568		111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	97.46
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.06
KOG2175		458	consensus Protein predicted to be involved in carb	95.26
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	95.05
smart00461		106	WH1 WASP homology region 1. Region of the Wiskott-	94.94
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	92.93
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	91.79
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	91.35
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	90.93
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	90.81
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	90.67
cd01207		111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	90.59
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	88.82
PTZ00429		746	beta-adaptin; Provisional	86.06
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	85.75
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	85.19
PF06058		122	DCP1: Dcp1-like decapping family; InterPro: IPR010	83.41
cd01205		105	WASP WASP-type EVH1 domain. WASP-type EVH1 domain.	81.76
PF05804		708	KAP: Kinesin-associated protein (KAP)	81.43

>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.9e-93  Score=788.30  Aligned_cols=442  Identities=44%  Similarity=0.739  Sum_probs=419.8

Q ss_pred             ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 002882          153 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP  232 (871)
Q Consensus       153 s~~~r~rla~~Il~~~~YI~kLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe~p  232 (871)
                      ++..|+.++.+| ++++||++|+++|+.|||++++++||++|+|+|+|+++|...|+|.|++|++||+|+|||||||++|
T Consensus         5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~   83 (458)
T KOG2175|consen    5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP   83 (458)
T ss_pred             cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence            345566666544 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcc--cccchhhHHhHHHHHHHhHHHHHHHhhCCHHHH
Q 002882          233 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI  310 (871)
Q Consensus       233 ~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLp--R~LDD~t~s~LnSlI~fNq~eIV~~Lq~d~~FL  310 (871)
                      ++++||+||...++|||||||.||.++.|||||||+|||||||||  +++||++++++||+||||+++||++||+|..|+
T Consensus        84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l  163 (458)
T KOG2175|consen   84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL  163 (458)
T ss_pred             ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence            988899999999999999999999999999999999999999999  899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882          311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ  390 (871)
Q Consensus       311 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~  390 (871)
                      .+||+++++++++.++|++++.|+||||.++|+||++.|.+||++|++.|||+++++++.++|.++|.++|||+..++++
T Consensus       164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~  243 (458)
T KOG2175|consen  164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM  243 (458)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCc-----chHHHHHHHHhccCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 002882          391 DPNLLRSYVVRQEGI-----PLLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI  461 (871)
Q Consensus       391 dP~lvR~~i~~qe~~-----~Ll~~Li~~ll~d~d~gl--k~Ql~eaLk~LLDp~~m~~~--e~d~fL~~FY~~~~~~L~  461 (871)
                      +|+|+|++.+.++..     .++++++++|+++.++.+  .+|++.++++||||++|.++  ++.+|+++||++|++.+.
T Consensus       244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~  323 (458)
T KOG2175|consen  244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS  323 (458)
T ss_pred             CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence            999999999987654     489999999999888755  59999999999999999885  899999999999999998


Q ss_pred             HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHH
Q 002882          462 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV  541 (871)
Q Consensus       462 ~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~  541 (871)
                      +|.......              .++++.+..+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus       324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~  389 (458)
T KOG2175|consen  324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL  389 (458)
T ss_pred             Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence            888654211              146788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHHhHhhcc
Q 002882          542 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV  611 (871)
Q Consensus       542 R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~eNik~Li~hlve~y~~~l~  611 (871)
                      |.++.++|++|+||++++  |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.+.
T Consensus       390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~  457 (458)
T KOG2175|consen  390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA  457 (458)
T ss_pred             hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence            999999999999999999  99999999999999999999999999999999999999999999998865

>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function	Back alignment and domain information

>cd00835 RanBD Ran-binding domain	Back alignment and domain information

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm	Back alignment and domain information

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain	Back alignment and domain information

>smart00160 RanBD Ran-binding domain	Back alignment and domain information

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00461 WH1 WASP homology region 1	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping	Back alignment and domain information

>cd01205 WASP WASP-type EVH1 domain	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		871
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1ddw_A		120	GLGF-domain protein homer; pleckstrin homology dom	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 77.6 bits (190), Expect = 1e-14
 Identities = 101/656 (15%), Positives = 191/656 (29%), Gaps = 184/656 (28%)

Query: 93  SFQEPTGCSYIWDNICNVQRNLNFNSLNSETFHSMNSELRELPPIELSTLPL--ILKTVT 150
           +F +   C  + D   ++        L+ E        +         TL L   L +  
Sbjct: 28  AFVDNFDCKDVQDMPKSI--------LSKEEI----DHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 151 ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENID-GLHMIFKIIKGIILLNSPQIF 209
           E  +  Q  + E++  +  F   LM   +     E     +     I +   L N  Q+F
Sbjct: 76  EEMV--QKFVEEVLRINYKF---LMSPIKT----EQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 210 EKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVG 269
            K                   V  +Q +   L++ +   E  P     VL  I      G
Sbjct: 127 AKYN-----------------VSRLQPYLK-LRQAL--LELRP--AKNVL--ID-----G 157

Query: 270 YL---KDVVLARVL-DEATVANLNSIIH----GNNAYVVSLLKDDSTFIQELFARLRSP- 320
            L   K  V   V         ++  I      N     ++L+     +Q+L  ++    
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNW 213

Query: 321 TTLEESKKNLVHFLHEFCGLSKSLQMVQQ----LRLFRDLMNEGI---FDI--------- 364
           T+  +   N+   +H      + L   +     L +  ++ N      F++         
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 365 ---VTDALQSQ--------DKKLVLT---GTDILILFLNQDPNLLRSYVVRQEGIPLLGL 410
              VTD L +            + LT      +L+ +L+  P  L   V+     P    
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNP---- 327

Query: 411 LVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQ 470
               +I +   D    +        D  T       TIIE         L          
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-------TIIESSLN----VLEPAEYRKMFD 376

Query: 471 E-GIAQSASSGGRVESTK-PEILSNICELLCFCVL-HHPYRIKCNFLLNNVVDKVLLLTR 527
              +           S   P IL          ++     +     ++N +    L+  +
Sbjct: 377 RLSVFP--------PSAHIPTIL--------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 528 RREKYLVVAAV--RFVRTILSRHDEH--LINH------FVKNNLLKPIVDAFVANGNRYN 577
            +E  + + ++       + + +  H  +++H      F  ++L+ P +D +  +   ++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 578 LLNSAVLELFEYIRK-----------------------------ENLKSLVKYIVDSFWN 608
           L N    E     R                              + LK    YI D   N
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---N 537

Query: 609 QLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNDS 664
                  + ++  F  K E+ L  S   + +            AL  E+E  F ++
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLL----------RIALMAEDEAIFEEA 583

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Length = 120	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		871
1rrp_B		134	Nuclear pore complex protein NUP358; complex (smal	98.77
1xke_A		130	RAN-binding protein 2; beta barrel, pleckstrin-hom	97.89
3n7c_A		130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	97.85
2ec1_A		125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	97.81
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.8
1k5d_B		201	RAN-specific GTPase-activating protein; ranbp1, ra	97.79
4hat_B		140	RAN-specific GTPase-activating protein 1; heat rep	97.68
3m1i_B		191	RAN-specific GTPase-activating protein 1; heat rep	97.66
2crf_A		150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	97.57
2y8g_A		138	Ranbp3-B, RAN-binding protein 3; protein transport	97.52
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.51
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.44
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.3
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.28
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.27
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.16
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.16
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.11
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.11
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.92
1qc6_A		130	EVH1 domain from ENA/VAsp-like protein; AN incompl	96.84
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.57
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	96.54
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.52
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.51
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.4
1evh_A		112	WH1 domain, protein (MENA EVH1 domain); molecular	96.27
1ddw_A		120	GLGF-domain protein homer; pleckstrin homology dom	96.26
1egx_A		115	VAsp, vasodilator-stimulated phosphoprotein; EVH1,	96.17
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.98
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.75
1i2h_A		168	PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology	95.69
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.67
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.42
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	95.18
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	95.01
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.59
2jp2_A		126	Spred-2, sprouty-related, EVH1 domain-containing p	94.38
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	94.04
1xod_A		118	Spred1; sprouty, EVH1, peptide-binding, signaling	93.69
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.69
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	93.63
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	93.38
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	92.94
2ifs_A		169	N-WAsp, wiskott-aldrich syndrome protien ineractin	92.68
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	92.61
1mke_A		152	WIP - N-WAsp, fusion protein consisting of wiskott	92.6
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	92.58
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.33
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.3
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	91.71
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	91.36
1qgr_A		876	Protein (importin beta subunit); transport recepto	91.31
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	91.3
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	91.02
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	90.57
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	90.31
1qgr_A		876	Protein (importin beta subunit); transport recepto	90.03
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	89.23
3nmz_A		458	APC variant protein; protein-protein complex, arma	88.56
3grl_A		651	General vesicular transport factor P115; vesicle t	88.3
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	86.88
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	85.78
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	84.62
3nmz_A		458	APC variant protein; protein-protein complex, arma	83.67
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	82.97
3grl_A		651	General vesicular transport factor P115; vesicle t	81.26

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3	Back alignment and structure

Probab=98.77  E-value=1.8e-08  Score=97.11  Aligned_cols=98  Identities=22%  Similarity=0.401  Sum_probs=84.3

Q ss_pred             CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccc--cCeEEEecCC-----C-
Q 002882           15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ--EDTIISWRDP-----E-   85 (871)
Q Consensus        15 rRVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQ--qeTLIvWte~-----~-   85 (871)
                      .|+|||.++ ++++|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|+.+  .+..++|+-.     + 
T Consensus        27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~  106 (134)
T 1rrp_B           27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP  106 (134)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred             EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence            699999996 467999999999998766666789999999999999999999999999986  4689999732     1 


Q ss_pred             ccccccccccCccchhHHHHHHHHHhh
Q 002882           86 YSTELALSFQEPTGCSYIWDNICNVQR  112 (871)
Q Consensus        86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~  112 (871)
                      ....+||.|..++.|+++|+.|.+.|.
T Consensus       107 k~~~~~irfk~~e~A~~f~~~~~e~~~  133 (134)
T 1rrp_B          107 KPEQLAIRFKTPEEAALFKCKFEEAQS  133 (134)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence            125799999999999999999999874

PyMOL of 1rrp

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3	Back alignment and structure

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A	Back alignment and structure

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*	Back alignment and structure

>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*	Back alignment and structure

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3	Back alignment and structure

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A	Back alignment and structure

>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*	Back alignment and structure

>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		871
d1mkea1		114	b.55.1.4 (A:31-144) Actin regulatory protein WASP	2e-20
d1xkea1		118	b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H	2e-08
d1egxa_		115	b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei	5e-07
d2crfa1		137	b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H	0.001
d1evha_		111	b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId	0.003
d1i2ha_		145	b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxI	0.004

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114	Back information, alignment and structure


class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 13/112 (11%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 1   MGAQEKSQANANPMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI 60
           +G +  + ++A     V++Y  + +  W  + +G   +          L + D +D + +
Sbjct: 6   LGKKCVTMSSA----VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLL 61

Query: 61  LLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQR 112
               +  + +Y        ++       ++AL+F            + ++  
Sbjct: 62  WEQELYNNFVYNSPRGYFHTFAGDT--CQVALNFANEEEAKKFRKAVTDLLG 111

PyMOL of d1mkea1

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115	Back information, alignment and structure

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137	Back information, alignment and structure

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111	Back information, alignment and structure

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		871
d1mkea1		114	Actin regulatory protein WASP {Rat (Rattus norvegi	99.67
d1xkea1		118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	98.83
d1egxa_		115	Vasodilator-stimulated phosphoprotein (VASP) {Huma	98.41
d1rrpb_		134	Nuclear pore complex protein Nup358 {Human (Homo s	97.89
d1evha_		111	Enabled {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d2crfa1		137	Ran binding protein 3 {Human (Homo sapiens) [TaxId	97.77
d1k5db_		146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	97.65
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.53
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.42
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.4
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.29
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.04
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.85
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.52
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	93.21
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.53
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.02
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.32
d1i2ha_		145	Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	89.22
d1xoda1		114	Sprouty-related, EVH1 domain-containing protein 1,	88.25
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	87.04
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	85.81
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	85.28
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	80.61

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=5.4e-17  Score=150.25  Aligned_cols=98  Identities=11%  Similarity=0.234  Sum_probs=90.7

Q ss_pred             CeeEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccccc
Q 002882           15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSF   94 (871)
Q Consensus        15 rRVKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSF   94 (871)
                      -.||||.+++++.|.++|||+++..+.....+.+|.|.++.++..|+++.|.++..|++|++|+++|.+.+  ..+||||
T Consensus        16 avv~lY~~~~~~~W~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~Fh~~~~~~--~~~GL~F   93 (114)
T d1mkea1          16 AVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDT--CQVALNF   93 (114)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECSS--SEEEEEE
T ss_pred             EEEEEEEECCCCeEEECCceEEEEEEECCCCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeEEEEEcCC--ceEEEee
Confidence            37999999878899999999999998777788999999999999999999999999999999999996653  6899999


Q ss_pred             cCccchhHHHHHHHHHhhcc
Q 002882           95 QEPTGCSYIWDNICNVQRNL  114 (871)
Q Consensus        95 Qe~~GC~~IW~~I~~VQ~~~  114 (871)
                      |++++|..+|+.|+++|++.
T Consensus        94 ~~~~eA~~f~~~i~~~~~~~  113 (114)
T d1mkea1          94 ANEEEAKKFRKAVTDLLGRR  113 (114)
T ss_dssp             SSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999864

PyMOL of d1mkea1

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure