Citrus Sinensis ID: 002884
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 870 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SD39 | 895 | Probable methyltransferas | yes | no | 0.978 | 0.950 | 0.558 | 0.0 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.912 | 0.957 | 0.534 | 0.0 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.682 | 0.771 | 0.636 | 0.0 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.817 | 0.923 | 0.556 | 0.0 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.579 | 0.855 | 0.550 | 1e-176 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.578 | 0.824 | 0.544 | 1e-169 | |
| Q9LN50 | 724 | Probable methyltransferas | no | no | 0.666 | 0.801 | 0.449 | 1e-160 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.591 | 0.755 | 0.476 | 1e-145 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.583 | 0.731 | 0.475 | 1e-143 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.639 | 0.848 | 0.433 | 1e-140 |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/911 (55%), Positives = 632/911 (69%), Gaps = 60/911 (6%)
Query: 1 MPLGK-RGLKRSPSSSSSTTSTTVTTIAFIALCVLGVWMLTGKTFSPPKIN--------- 50
M G+ RG KR+ S+S+ ++T+T + F+ALCV GVWML+ + PP+I
Sbjct: 1 MAFGRGRGNKRT---STSSYASTITMVIFVALCVFGVWMLSSNSVIPPQITQGSTRAAVA 57
Query: 51 -TTTSDSGFSFS--DEPETLKATEKNEHTVFEDNPGVLPIDAIQTGDPNQ---------- 97
T SD S + DEPE K E +E FEDNPG LP DA+++ D +
Sbjct: 58 ETERSDVSASSNGNDEPEPTKQ-ESDEQQAFEDNPGKLPDDAVKSEDEQRKSAKEKSETT 116
Query: 98 THYTITNDKGSGGSDKQDEGNASSAGDDDSKM--SDEQKVKKIIEE----QKKQNEVDTQ 151
+ T T + DK E G ++ + S+E ++KK+++E QK+Q + D
Sbjct: 117 SSKTQTQETQQNNDDKISEEKEKDNGKENQTVQESEEGQMKKVVKEFEKEQKQQRDEDAG 176
Query: 152 MSEDKTLIE--------------NQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNAND 197
T + N+Q D+N + + KQ+Q E +T +
Sbjct: 177 TQPKGTQGQEQGQGKEQPDVEQGNKQGQEQDSNTDVTFTDATKQEQPMETGQGETSETSK 236
Query: 198 PENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENV 257
E + E++ E+ +Q+ ++ + + ++ + ++ + ++
Sbjct: 237 NEENGQPEEQNSGNEETGQQNEEKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEE 296
Query: 258 TQETEQENTEETDGKR-AKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQAS 316
++ EN E+ + ++ K+H+ + SG PKES ES+KSW +QA+
Sbjct: 297 ESTSKDENMEQQEERKDEKKHEQGSEASGFG----------SGIPKESAESQKSWKSQAT 346
Query: 317 QSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHR 376
+S++EK+R+ ES E +DG W LCN T G D+IPCLDN +AI +LR+ H+EHR
Sbjct: 347 ESKDEKQRQTSESNTVERI--MDGNAWVLCNATAGTDYIPCLDNEEAIMKLRSRRHFEHR 404
Query: 377 ERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIIT 436
ERHCPE+ P CLVPLPEGYK I WP+SRDKIWY NVPH LAEVKGHQNWV+VTGE +T
Sbjct: 405 ERHCPEDPPTCLVPLPEGYKEAIKWPESRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLT 464
Query: 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFA 496
FPGGGTQFIHGALHYIDF+QQ++ IAWGK TRV LDVGCGVASFGG+LFERDV+ MS A
Sbjct: 465 FPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVGCGVASFGGFLFERDVIAMSLA 524
Query: 497 PKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELN 556
PKDEH+AQ+QFALER IPAISAVMG+KRL FP VFDL+HCARCRVPWH +GG LLLELN
Sbjct: 525 PKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLLLELN 584
Query: 557 RVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKP 616
R+LRPGGYFVWSATPVYQKL EDV+IW MS LT S+CWELVTI DKLN G AIY+KP
Sbjct: 585 RMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAIYQKP 644
Query: 617 TTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRP 676
TNECYEKR PP+C+N +D NAAWYVPLQAC+H+VP + ERGS+WP WP RLQ P
Sbjct: 645 ATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTP 704
Query: 677 PYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFA 736
PYWLNSSQMGIYG+PAP+DFT DY+HW++VVS YM+ +GI+WSNVRNVMDMRAVYGGFA
Sbjct: 705 PYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFA 764
Query: 737 AALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796
AALKDLQVWVMNVVN+NSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS+L
Sbjct: 765 AALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKL 824
Query: 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSA 856
+ RC LVPVMAEVDRIVRPGGKLIVRDE + + EVEN LKSLHW++ FSK QEG+LSA
Sbjct: 825 RTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWDVHLTFSKHQEGILSA 884
Query: 857 QKGNWQPDTYQ 867
QKG W+P+T Q
Sbjct: 885 QKGFWRPETSQ 895
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/858 (53%), Positives = 578/858 (67%), Gaps = 64/858 (7%)
Query: 16 SSTTSTTVTTIAFIALCVLGVWMLTGKTFSPPKINTTTSDSGFSFSDEPETLKATEKNEH 75
SS +TVT + F+ALC++G+WM+T + P + S + T A E N
Sbjct: 15 SSNYCSTVTVVVFVALCLVGIWMMTSSSVGPAQNVDEVSLDNKDGIKKQMTPPAEEGNGQ 74
Query: 76 TVFEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQDEGNASSAGDDDSKMSDEQKV 135
FED P ++T PN+ DK+ +G+AS +D+S
Sbjct: 75 K-FEDAP-------VET--PNE--------------DKKGDGDASLPKEDESS------- 103
Query: 136 KKIIEEQKKQNEVDTQMSEDKTLIENQQFFVFDNNAKSSTE--EMIKQQQLRENAGNQTL 193
K+ N+ + + + ++ F + KS TE E K EN G L
Sbjct: 104 ------SKQDNQEEKKEEK------TKEEFTPSSETKSETEGGEDQKDDSKSENGGGGDL 151
Query: 194 NANDPENHISDEDKRRSIEKHQEQHVQQKE-------ETPFHSFSDQIVPYLQPPPQQEV 246
+ SDE+ + EK + + E + F S + + +
Sbjct: 152 DEKKDLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDD 211
Query: 247 QVSDSPKSENVTQETEQENTE-ETDGKRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESL 305
+ +E+ +TE+ENTE D + +E + N SG +P G E+
Sbjct: 212 DKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSG---DLSPPGAQL-ELLNETT 267
Query: 306 ESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQ 365
S+STQA++S+NEKE +K G+G+ Y W LCN T GPD+IPCLDN +AI+
Sbjct: 268 AQNGSFSTQATESKNEKEAQK-------GSGDKLDYKWALCNTTAGPDYIPCLDNVQAIR 320
Query: 366 QLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQ 425
L +T HYEHRERHCP+ P CLVPLP+GYK PI WPKSR+KIWY NVPH LAE KGHQ
Sbjct: 321 SLPSTKHYEHRERHCPDSPPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQ 380
Query: 426 NWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYL 485
NWV+VTGE +TFPGGGTQF HGALHYIDFIQ++VP IAWGK +RV LDVGCGVASFGG+L
Sbjct: 381 NWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFL 440
Query: 486 FERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545
F+RDV+TMS APKDEH+AQ+QFALERGIPAISAVMGT RL FP VFD+VHCARCRVPWH
Sbjct: 441 FDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWH 500
Query: 546 IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKL 605
I+GGKLLLELNRVLRPGG+FVWSATPVYQK EDVEIW AMS L MCWELV+I D +
Sbjct: 501 IEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTI 560
Query: 606 NSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQW 665
N G A YRKPT+NECY+ R++ PP+C + +DPNA+W VPLQAC+H P DK +RGSQW
Sbjct: 561 NGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQW 620
Query: 666 PEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNV 725
PE WP RL++ P+WL+SSQ G+YG+ AP+DF+ DY+HW+ VV+ SY++GLGINW++VRNV
Sbjct: 621 PEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNV 680
Query: 726 MDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYD 785
MDMRAVYGGFAAAL+DL+VWVMNVV ++SPDTL IIYERGLFGIYHDWCESFSTYPRSYD
Sbjct: 681 MDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYD 740
Query: 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845
LLHADHLFS+LK RC L V+AEVDR++RP GKLIVRD+ + +VE +K++ WE+
Sbjct: 741 LLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMT 800
Query: 846 FSKDQEGVLSAQKGNWQP 863
+SK++EG+LS QK W+P
Sbjct: 801 YSKEKEGLLSVQKSIWRP 818
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/608 (63%), Positives = 473/608 (77%), Gaps = 14/608 (2%)
Query: 256 NVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQA 315
N T+E E+ E T+ K + T ++ S+ P G + KES +WSTQ
Sbjct: 166 NGTEENAGESEENTEKKSEENAGETEESTEKSKDVFPAG-DQAEITKESSTGSGAWSTQL 224
Query: 316 SQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEH 375
+SQNEK+ + W++CN T GPD+IPCLDN +AI++L +T HYEH
Sbjct: 225 VESQNEKK------------AQVSSIKWKVCNVTAGPDYIPCLDNWQAIRKLHSTKHYEH 272
Query: 376 RERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEII 435
RERHCPEE P CLV LPEGYK I WPKSR+KIWY N+PH LAEVKGHQNWV+++GE +
Sbjct: 273 RERHCPEESPRCLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMSGEYL 332
Query: 436 TFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSF 495
TFPGGGTQF +GALHYIDF+Q++ P IAWG TRV LDVGCGVASFGGYLF+RDVL +SF
Sbjct: 333 TFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFDRDVLALSF 392
Query: 496 APKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLEL 555
APKDEH+AQ+QFALERGIPA+S VMGTKRL FP +VFDL+HCARCRVPWHI+GGKLLLEL
Sbjct: 393 APKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLEL 452
Query: 556 NRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615
NR LRPGG+FVWSATPVY+K EDV IW AMS LT +MCWEL+TIK D+LN G AIY+K
Sbjct: 453 NRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAIYQK 512
Query: 616 PTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQR 675
P +N+CY +R+Q PP+C++ +D NAAW VPL+AC+H+V D ++RG+ WPE+WP R++
Sbjct: 513 PMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPERVET 572
Query: 676 PPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGF 735
P WL+ SQ G+YG+PA +DFT D++ W+ +VS SY++G+GI+WS VRNVMDMRAVYGGF
Sbjct: 573 VPQWLD-SQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGF 631
Query: 736 AAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795
AAALKDL++WVMNVV ++SPDTLPIIYERGLFGIYHDWCESFSTYPR+YDLLHADHLFS
Sbjct: 632 AAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSS 691
Query: 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLS 855
LK RC LV VMAEVDRI+RP G IVRD+ + E+E +KS+ W + SKD EG+LS
Sbjct: 692 LKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDGEGLLS 751
Query: 856 AQKGNWQP 863
QK W+P
Sbjct: 752 VQKSWWRP 759
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/751 (55%), Positives = 529/751 (70%), Gaps = 40/751 (5%)
Query: 119 ASSAG---DDDSKMSDEQKVKKIIEEQKKQNEVDTQMSEDKTLIENQQFFVFDNNAKSST 175
A SAG D +K + ++K ++ +N D + E++ EN N K+ +
Sbjct: 45 ADSAGYSSTDTAKDVSKNDLRKEEGDRDPKNFSDEKNEENEAATEN-------NQVKTDS 97
Query: 176 EEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQIV 235
E + Q+ E++G +T E +D + +E++V++ S SD+
Sbjct: 98 ENSAEGNQVNESSGEKTEAG---EERKESDDNNGDGDGEKEKNVKE-----VGSESDETT 149
Query: 236 PYLQPPPQQEVQVSDSPKSE--NVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPD 293
Q Q + ++ KSE N +E +EN ET+ K K P
Sbjct: 150 ---QKEKTQLEESTEENKSEDGNGNEEKAEENASETEESTEKSSKEVF----------PA 196
Query: 294 GRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPD 353
G + KES +WSTQ +SQNEK+ ++ D+ + Y W+ CN T GPD
Sbjct: 197 G-DQAEITKESSTGDGAWSTQLVESQNEKKAQQSSISKDQSS-----YGWKTCNVTAGPD 250
Query: 354 FIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNV 413
+IPCLDN +AI++L TT HYEHRERHCPEE P CLV LP+GYK I WPKSR+KIWY NV
Sbjct: 251 YIPCLDNWQAIKKLHTTMHYEHRERHCPEESPHCLVSLPDGYKRSIKWPKSREKIWYNNV 310
Query: 414 PHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLD 473
PH LAE+KGHQNWV+++GE +TFPGGGTQF +GALHYIDFIQQ+ P IAWG TRV LD
Sbjct: 311 PHTKLAEIKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILD 370
Query: 474 VGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFD 533
VGCGVASFGGYLFERDVL +SFAPKDEH+AQ+QFALERGIPA+ VMGTKRL FP +VFD
Sbjct: 371 VGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFD 430
Query: 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSM 593
L+HCARCRVPWHI+GGKLLLELNR LRPGG+FVWSATPVY+K ED IW AMS LT +M
Sbjct: 431 LIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAM 490
Query: 594 CWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHR 653
CW+LVTIK DKLN G AIY+KPT+N+CY KR Q PP+C++ +D NAAW VPL+AC+H+
Sbjct: 491 CWKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHK 550
Query: 654 VPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMS 713
V D ++RG+ WP WP R++ P WL+ SQ G+YG+PAP+DFT D + W+ +VS +Y++
Sbjct: 551 VTEDSSKRGAVWPNMWPERVETAPEWLD-SQEGVYGKPAPEDFTADQEKWKTIVSKAYLN 609
Query: 714 GLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDW 773
+GI+WSNVRNVMDMRAVYGGFAAALKDL++WVMNVV V++PDTLPIIYERGLFGIYHDW
Sbjct: 610 DMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDW 669
Query: 774 CESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVEN 833
CESF+TYPR+YDLLHADHLFS L+ RC LV VMAE+DRI+RP G I+RD+ + EVE
Sbjct: 670 CESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEK 729
Query: 834 FLKSLHWEILFAFSKDQEGVLSAQKGNWQPD 864
+KS+ W++ SKD EG+LS +K W+P+
Sbjct: 730 MVKSMKWKVKMTQSKDNEGLLSIEKSWWRPE 760
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/521 (55%), Positives = 362/521 (69%), Gaps = 17/521 (3%)
Query: 343 WRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWP 402
W LC D+IPCLDN AI+QL++ H EHRERHCPE P CL+PLP+ YK P+PWP
Sbjct: 80 WDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSPKCLLPLPDNYKPPVPWP 139
Query: 403 KSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKI 462
KSRD IWY NVPHP L E K QNWV+ GE + FPGGGTQF G HY++FI++A+P I
Sbjct: 140 KSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPSI 199
Query: 463 AWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT 522
WGK RV LDVGCGVASFGG L ++DV+TMSFAPKDEH+AQIQFALERGIPA +V+GT
Sbjct: 200 KWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSVIGT 259
Query: 523 KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582
++L FP N FDL+HCARCRV W DGGK LLELNRVLRPGG+F+WSATPVY+ D I
Sbjct: 260 QQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRDSRI 319
Query: 583 WNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAA 642
WN M +LT S+CW++VT +D + G IY+KPT+ CY KR+ PP+C +E N +
Sbjct: 320 WNEMVSLTKSICWKVVTKTVDS-SGIGLVIYQKPTSESCYNKRSTQDPPLCDKKE-ANGS 377
Query: 643 WYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKH 702
WYVPL C+ ++P + WPE WP RL + + + + +D +
Sbjct: 378 WYVPLAKCLSKLPSGNVQ---SWPELWPKRLVS----VKPQSISVKA----ETLKKDTEK 426
Query: 703 WRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIY 762
W VS Y+ L +NWS VRNVMDM A +GGFAAAL +L +WVMNVV V+ PDTL ++Y
Sbjct: 427 WSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVY 486
Query: 763 ERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822
+RGL G+YHDWCES +TYPR+YDLLH+ L L RC++V V+AE+DRIVRPGG L+V+
Sbjct: 487 DRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQ 546
Query: 823 DEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQP 863
D + ++E+ L SLHW ++ L +KG W+P
Sbjct: 547 DNMETIMKLESILGSLHWSTKIY----EDRFLVGRKGFWRP 583
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 284/522 (54%), Positives = 352/522 (67%), Gaps = 19/522 (3%)
Query: 343 WRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWP 402
W+ C PD+IPCLDNTKAI++L++ + EHRERHCPE P CLVPLP+ YKVP+PWP
Sbjct: 107 WKRCE---SPDYIPCLDNTKAIKKLKSKRNMEHRERHCPERSPKCLVPLPQHYKVPLPWP 163
Query: 403 KSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKI 462
+SRD IWY NVPHP L E K QNWVR +G FPGGGTQF G +HYI+FIQ+ +P +
Sbjct: 164 QSRDMIWYDNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPIL 223
Query: 463 AWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT 522
WGK RV LDVGCGVASFGG L +++V+TMSFAPKDEH+AQIQFALERGIPA AV+GT
Sbjct: 224 DWGKKVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIGT 283
Query: 523 KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582
++L FP N +D++HCARCRV WH GG+ LLELNRVLRPGG+FVWSATPVYQ +
Sbjct: 284 QKLPFPDNAYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVYQHDEGHRNV 343
Query: 583 WNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEE-DPNA 641
W M +LT SMCW++V + GF IY+KP ++ CYE R PP+C EE N+
Sbjct: 344 WKTMESLTTSMCWKVVA--RTRFTKVGFVIYQKPDSDSCYESRKNKDPPLCIEEETKKNS 401
Query: 642 AWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYK 701
+WY PL C+ ++PV +WP WP RL P L Q + + F D K
Sbjct: 402 SWYTPLLTCLPKLPVSPI---GKWPSGWPERLTETPVSLFREQR------SEESFREDSK 452
Query: 702 HWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPII 761
W V+S Y+ L INW+ + NVMDM A YGGFAAAL + +WVMNV+ V DTL I
Sbjct: 453 LWSGVMSNIYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLSTI 512
Query: 762 YERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV 821
++RGL GIYHDWCESF+TYPRSYDLLH+ LF+ L RC L+ V+ E+DRI+RPGG L V
Sbjct: 513 FDRGLIGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLAV 572
Query: 822 RDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQP 863
+D + ++ L SL W K L K +W+P
Sbjct: 573 QDTVEMLKKLNPILLSLRWSTNLYRGK----FLVGLKSSWRP 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/607 (44%), Positives = 385/607 (63%), Gaps = 27/607 (4%)
Query: 259 QETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQS 318
+E E +++++++ + +E ++ N G S+ N DG SS E +
Sbjct: 143 EEAESDDSDQSNKEDGEEGTESDGNEGESDG-NGDGSVDDSSASVDEEVEEKNEEVTVNE 201
Query: 319 QNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRER 378
++K +RK + Y+WRLCN + +++PC+DN I +L++ Y HRER
Sbjct: 202 ISKKRKRKGPVFDPKAE-----YSWRLCNTRSKHNYMPCIDNDGLIGRLQS---YRHRER 253
Query: 379 HCPEEGPVCLVPLP-EGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITF 437
CP++ +CLVPLP +GY P+ WP+S+ KI Y+NV HP LA NWV TGE ++F
Sbjct: 254 SCPKKPVMCLVPLPHDGYDPPVSWPESKSKILYKNVAHPKLAAYIKKHNWVNETGEYLSF 313
Query: 438 PGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAP 497
P T F L Y++FIQ+ VP I WGK R+ LD+GC +SF L ++DVLT+S
Sbjct: 314 PQNQTTFNGNVLQYLEFIQEMVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGL 373
Query: 498 KDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNR 557
KD+ Q ALERG P + + ++RL FP VFD +HCA C V WH GGKLLLE+NR
Sbjct: 374 KDDLVDLAQVALERGFPTFVSSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLLLEMNR 433
Query: 558 VLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPT 617
+LRP GYF+ S+ + +E AM+ LT S+CW ++ K ++ + G IY+KP
Sbjct: 434 ILRPNGYFILSSN------NDKIEDDEAMTALTASICWNILAHKTEEASEMGVRIYQKPE 487
Query: 618 TNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPP 677
+N+ YE R + PP+C++ E+P+AAWYVP++ C++ +P + G++WPE WP RL+ P
Sbjct: 488 SNDIYELRRKKNPPLCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYP 547
Query: 678 YWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAA 737
WL S + + D HW +V+ SY++GLGI+W ++RNVMDM A+YGGF A
Sbjct: 548 EWLTSKEKAM----------EDTNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGA 597
Query: 738 ALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797
+L VWVMNVV V+SPDTLP IYERGL GIYHDWCE F TYPRSYDLLHADHLFS+LK
Sbjct: 598 SLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLK 657
Query: 798 NRCKL-VPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSA 856
NRCK ++ E+DR+ RPGG ++VRD+ + +E L+SLHWEI +++D+EG+L A
Sbjct: 658 NRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCA 717
Query: 857 QKGNWQP 863
QK W+P
Sbjct: 718 QKTLWRP 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/535 (47%), Positives = 348/535 (65%), Gaps = 20/535 (3%)
Query: 312 STQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTA 371
S + +Q E E D+ + + + +C+E ++IPCLDN +AI++L +TA
Sbjct: 119 SAETLGNQTEFES-SDDDDIKSTTARVSVRKFEICSENM-TEYIPCLDNVEAIKRLNSTA 176
Query: 372 HYEHRERHCPEEGPV--CLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVR 429
E ER+CP +G C VP+P+GY+ PIPWP+SRD++W+ NVPH L E KG QNW+
Sbjct: 177 RGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIY 236
Query: 430 VTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERD 489
+ FPGGGTQFIHGA Y+D I Q +P I++G +TRV LD+GCGVASFG YL R+
Sbjct: 237 KENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMSRN 296
Query: 490 VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGG 549
VLTMS APKD H+ QIQFALERG+PA+ A T+RL +P FDLVHC+RCR+ W D G
Sbjct: 297 VLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDG 356
Query: 550 KLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAG 609
LLLE+NR+LR GGYFVW+A PVY+ E W M NLT +CW LV
Sbjct: 357 ILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVK------KEGY 410
Query: 610 FAIYRKPTTNECYEKRNQ-MTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEA 668
AI++KP N CY R ++PP+C +E+DP+ WYV L+AC+ R+ E G A
Sbjct: 411 IAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRI----EENGYGANLA 466
Query: 669 -WPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMD 727
WP RL PP L + Q+ Y + F + K+W+ ++S +Y++ L +RNV+D
Sbjct: 467 PWPARLLTPPDRLQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNALHWKQIGLRNVLD 524
Query: 728 MRAVYGGFAAALKDLQV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYD 785
MRA +GGFAAAL +L+V WV+NV+ V+ P+TLP+IY+RGL G+ HDWCE F TYPR+YD
Sbjct: 525 MRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYD 584
Query: 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW 840
LLHA LFS + RC + +M E+DRI+RPGG++ +RD + +E++ ++ W
Sbjct: 585 LLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRW 639
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/526 (47%), Positives = 338/526 (64%), Gaps = 18/526 (3%)
Query: 320 NEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERH 379
N+ E + +S+GD + + +C E+ ++IPCLDNT I++L++T E ERH
Sbjct: 155 NQTEIVEAKSDGDS-KARVRIKKFGMCPESMR-EYIPCLDNTDVIKKLKSTERGERFERH 212
Query: 380 CPEEGPV--CLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITF 437
CPE+G CLVP P+GY+ PIPWPKSRD++W+ NVPH L E KG QNW+ F
Sbjct: 213 CPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKF 272
Query: 438 PGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAP 497
PGGGTQFIHGA Y+D + + V I +GK+ RV++DVGCGVASFG YL RDV+TMS AP
Sbjct: 273 PGGGTQFIHGADQYLDQMSKMVSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAP 332
Query: 498 KDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNR 557
KD H+ QIQFALERG+PA++A T+RL +P FDL+HC+RCR+ W D G LLLE+NR
Sbjct: 333 KDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINR 392
Query: 558 VLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPT 617
+LR GGYF W+A PVY+ E W M NLT+S+CW+LV AI++KP
Sbjct: 393 MLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVK------KEGYVAIWQKPF 446
Query: 618 TNECYEKRNQMT-PPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRP 676
N+CY R T PP+C +DP+ WY L+ C+ R+P + G P WP RL P
Sbjct: 447 NNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP--EKGYGGNVP-LWPARLHTP 503
Query: 677 PYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFA 736
P L + + Y + F + K+W ++ Y+ L +RNV+DMRA +GGFA
Sbjct: 504 PDRLQTIKFDSY-IARKELFKAESKYWNEIIG-GYVRALKWKKMKLRNVLDMRAGFGGFA 561
Query: 737 AALKD--LQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS 794
AAL D L WV++VV V+ P+TLP+IY+RGL G+ HDWCE F TYPR+YD LHA LFS
Sbjct: 562 AALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLFS 621
Query: 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW 840
+ RC++ ++ E+DRI+RPGG+ +RD + E++ K++ W
Sbjct: 622 IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 262/604 (43%), Positives = 361/604 (59%), Gaps = 48/604 (7%)
Query: 240 PPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDGRNTGS 299
PPP+ +++S P V + + N N +S+++ G
Sbjct: 73 PPPRPRLKISPPPLPPTVVRT-----------------GIINENGAMSDSFE-----IGG 110
Query: 300 SPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLD 359
+S++ KS + +S +E E E I+ +LC++T D+IPCLD
Sbjct: 111 FDPDSIDELKSATGNSSV---------EEKESPEVGFQIEKL--KLCDKTK-IDYIPCLD 158
Query: 360 NTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLA 419
N + I++L T E+ ERHCP++ CL+P P+GYK PI WP+SRDKIW+ NVPH L
Sbjct: 159 NEEEIKRLNNTDRGENYERHCPKQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLV 218
Query: 420 EVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVA 479
E KG QNW+R + FPGGGTQFIHGA Y+D I Q +P I +G TRV+LD+GCGVA
Sbjct: 219 EDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVA 278
Query: 480 SFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539
SFG +L +R+ T+S APKD H+ QIQFALERG+PA+ AV T+RL +P F+++HC+R
Sbjct: 279 SFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSR 338
Query: 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVT 599
CR+ W D G LLLE+NR+LR GGYFVW+A PVY+ E W M +LT +CWEL+
Sbjct: 339 CRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIK 398
Query: 600 IKMDKLNSAGFAIYRKPTTNECYEKRNQMT-PPMCQNEEDPNAAWYVPLQACVHRVPVDK 658
A++RKP N CY R T PP+C+ ++DP+ WYV ++ C+ R+P D
Sbjct: 399 ------KEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLP-DN 451
Query: 659 AERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGIN 718
+ WP RL PP L S QM Y + + + W VV SY+
Sbjct: 452 GYGANV--STWPARLHDPPERLQSIQMDAYIS-RKEIMKAESRFWLEVVE-SYVRVFRWK 507
Query: 719 WSNVRNVMDMRAVYGGFAAALKDLQV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCES 776
+RNV+DMRA +GGFAAAL DL + WVMN+V V+ +TLP+IY+RGL G HDWCE
Sbjct: 508 EFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEP 567
Query: 777 FSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLK 836
F TYPR+YDL+HA LFS K RC + +M E+DR++RPGG + +RD S + +++ K
Sbjct: 568 FDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAK 627
Query: 837 SLHW 840
++ W
Sbjct: 628 AIGW 631
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 870 | ||||||
| 449464560 | 882 | PREDICTED: probable methyltransferase PM | 0.937 | 0.925 | 0.583 | 0.0 | |
| 224094893 | 847 | predicted protein [Populus trichocarpa] | 0.936 | 0.962 | 0.615 | 0.0 | |
| 359476854 | 938 | PREDICTED: probable methyltransferase PM | 0.982 | 0.911 | 0.572 | 0.0 | |
| 255585969 | 961 | ATP binding protein, putative [Ricinus c | 0.7 | 0.633 | 0.758 | 0.0 | |
| 297735062 | 860 | unnamed protein product [Vitis vinifera] | 0.952 | 0.963 | 0.589 | 0.0 | |
| 224134182 | 949 | predicted protein [Populus trichocarpa] | 0.7 | 0.641 | 0.728 | 0.0 | |
| 15230391 | 895 | putative methyltransferase PMT27 [Arabid | 0.978 | 0.950 | 0.558 | 0.0 | |
| 356495388 | 796 | PREDICTED: probable methyltransferase PM | 0.879 | 0.961 | 0.559 | 0.0 | |
| 357483593 | 845 | Ankyrin-like protein [Medicago truncatul | 0.887 | 0.913 | 0.534 | 0.0 | |
| 356516372 | 806 | PREDICTED: probable methyltransferase PM | 0.906 | 0.978 | 0.540 | 0.0 |
| >gi|449464560|ref|XP_004149997.1| PREDICTED: probable methyltransferase PMT27-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/895 (58%), Positives = 638/895 (71%), Gaps = 79/895 (8%)
Query: 22 TVTTIAFIALCVLGVWMLTGKTFSPPKINTTTSDSG--------------FSFSDEPETL 67
TVTT+ F+ALCVLGVWMLT + PP+ T TS S S+EP+
Sbjct: 21 TVTTVVFLALCVLGVWMLTSNSAVPPQTTTRTSSDSSTSSTSTIATTTDFVSSSEEPQLP 80
Query: 68 KATEKNEHTVFEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQDEGNASSAGDDDS 127
K+ +K FEDNPG LP+DAI++ D + I +D + + + + NA+
Sbjct: 81 KSEDKESTPAFEDNPGDLPLDAIKSDDSS----NIVSDNDAKSREDRPKDNAND------ 130
Query: 128 KMSDEQKVKKIIEEQKKQNEVDTQMSEDKTLIENQQFFVFDNNAKSSTEEMIKQQQLREN 187
++E + NE Q+SE+ T+ +NQQ A EE + +E
Sbjct: 131 -----------VQEPRDNNEA--QLSEESTMTQNQQV-----EATQKIEEKLDLGGNQEQ 172
Query: 188 AGNQTLNANDPENHI-SDEDKRRSIEKHQEQHVQQKEETPFHSFSDQIV--PYLQ----- 239
N +N+ H+ SD ++++ + + Q ++ + ++I P +
Sbjct: 173 NTNLPDQSNESTEHVESDNKQQQATDIPEISGDSQNDQPKLGTEGEKITQEPEIHNQDDD 232
Query: 240 -----------------------PPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKE 276
P ++ Q + +N + TE + +++T+ K ++E
Sbjct: 233 KAQQQTQQQQEQDSSNTNNNNEETPSLEQNQPRKRHRGKN--KSTEDQESQQTESKESQE 290
Query: 277 -HKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGN 335
K + + V ET T PKES ES+KSWSTQA+QS+NEK+RR++ES D
Sbjct: 291 VPKDSKTEIKVEETTTAGSLETSGIPKESKESKKSWSTQAAQSENEKDRRREESSSD--- 347
Query: 336 GNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGY 395
G+I GYTW++CN T GPD+IPCLDN KAI+QLRTT H+EHRERHCPEEGP CLV LPEGY
Sbjct: 348 GSIYGYTWQMCNVTAGPDYIPCLDNEKAIKQLRTTKHFEHRERHCPEEGPTCLVSLPEGY 407
Query: 396 KVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFI 455
K I WP+SRDKIWY NVPH LAEVKGHQNWV+VTGE +TFPGGGTQFIHGALHYI+F+
Sbjct: 408 KRSIEWPRSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIEFL 467
Query: 456 QQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPA 515
QQ+VP IAWGK TRV LDVGCGVASFGG+LFE+DVLTMSFAPKDEH+AQ+QFALERGIPA
Sbjct: 468 QQSVPDIAWGKRTRVILDVGCGVASFGGFLFEKDVLTMSFAPKDEHEAQVQFALERGIPA 527
Query: 516 ISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK 575
ISAVMG++RL FP VFD +HCARCRVPWH++GG LLLELNRVLRPGG+FVWSATPVYQ
Sbjct: 528 ISAVMGSQRLPFPSMVFDTIHCARCRVPWHVEGGMLLLELNRVLRPGGFFVWSATPVYQT 587
Query: 576 LGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQN 635
L EDVEIW MS LT SMCWELVTI+ DKLNS G AIYRKP +NECY++R PPMC+N
Sbjct: 588 LEEDVEIWKEMSALTKSMCWELVTIQKDKLNSVGAAIYRKPISNECYDQRKHKRPPMCKN 647
Query: 636 EEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQD 695
++DPNAAWYVPLQAC+HR PVD RGS WPE WP RLQ PPYWLNSSQMG+YG+PAPQD
Sbjct: 648 DDDPNAAWYVPLQACMHRAPVDNTVRGSSWPEQWPQRLQAPPYWLNSSQMGVYGKPAPQD 707
Query: 696 FTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP 755
F+ DY+HW+ VV+ +YM+GLGIN SN+RNVMDMR+VYGGFAAAL+DL+VWVMNVVN++SP
Sbjct: 708 FSTDYEHWKRVVNKTYMNGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVMNVVNIDSP 767
Query: 756 DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRP 815
DTLP+IYERGLFGIYHDWCESFSTYPR+YDLLHADHLFS+LK RCKL PV+AEVDRIVRP
Sbjct: 768 DTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLQPVLAEVDRIVRP 827
Query: 816 GGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQPDTYQPSS 870
GGKLIVRDE S + EVEN LKSL WE+ FSK+QEG+LSAQKG+W+PDTY SS
Sbjct: 828 GGKLIVRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGDWRPDTYAESS 882
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094893|ref|XP_002310282.1| predicted protein [Populus trichocarpa] gi|222853185|gb|EEE90732.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/859 (61%), Positives = 642/859 (74%), Gaps = 44/859 (5%)
Query: 20 STTVTTIAFIALCVLGVWMLTGKT---------FSPPKINTTT---SDSGFSFSDEPETL 67
++T+TTIAFIALC +GVWMLT + P I TTT +D+ S S+E E
Sbjct: 17 TSTLTTIAFIALCAIGVWMLTSNPQVTPQTTTHVAKPVITTTTDIAADADVSISNEVEHT 76
Query: 68 KATEKNEHTVFEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQDEGNASSAGDDDS 127
++ K + V+EDNPG LP DAI++ + + ++ + G + D G++ + D
Sbjct: 77 ESRSKKDTHVYEDNPGDLPDDAIKSDELKSNDDSDNKEESNYGKQETDGGDSKA---DQE 133
Query: 128 KMSDEQKVKKIIEEQKKQNEVDTQMSEDKTLIENQQFFVFDNNAKSSTEEMIKQQQLREN 187
S + K + EEQ+KQ E Q+SE+ + +N+Q A +++E + + +E
Sbjct: 134 SSSQDLKGQGSGEEQQKQEERQNQISEESSHTQNRQ-------ADQTSQESSQSEGSQEA 186
Query: 188 AGNQTLNANDPENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQIVPYLQPPPQQEVQ 247
+ NQ + E + S E+K ++ ++ V + +++ H D I + E Q
Sbjct: 187 SVNQ-----EQETNASQEEKTNDNQEQEQSTVSETDDSNSH---DSI-------NKNEEQ 231
Query: 248 VSDSPKSENVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESLES 307
+ + ++ E TE+ + ++ T S E+ P G N G PKES
Sbjct: 232 DHAQQQQQQQQEDVENSKTEQESQVDSNTNQETKQESSSGESAFPGGGNPGI-PKES--- 287
Query: 308 RKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQL 367
++SWSTQA++S+N+KERRK+ES+G N ++ GYTW+LCN T GPD+IPCLDN KA++QL
Sbjct: 288 KESWSTQAAESENQKERRKEESDG---NDSMYGYTWQLCNVTAGPDYIPCLDNEKALRQL 344
Query: 368 RTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNW 427
TT H+EHRERHCPE GP CLVPLP+GYK PI WP+SRDKIWY NVPHP LAEVKGHQNW
Sbjct: 345 HTTGHFEHRERHCPELGPTCLVPLPQGYKRPITWPQSRDKIWYHNVPHPKLAEVKGHQNW 404
Query: 428 VRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE 487
V+VTGE +TFPGGGTQFIHGALHYIDF+QQAVPKI WGK+TRV LDVGCGVASFGGY FE
Sbjct: 405 VKVTGEFLTFPGGGTQFIHGALHYIDFVQQAVPKIKWGKHTRVILDVGCGVASFGGYNFE 464
Query: 488 RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHID 547
RDVLTMSFAPKDEH+AQ+QFALERGIPAISAVMG++RL FP VFDL+HCARCRVPWH +
Sbjct: 465 RDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSRVFDLIHCARCRVPWHAE 524
Query: 548 GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNS 607
GGKLLLELNR+LRPGGYFVWSATPVYQKL EDVEIW AMS LTVSMCWELVTIK DKLN
Sbjct: 525 GGKLLLELNRLLRPGGYFVWSATPVYQKLQEDVEIWQAMSALTVSMCWELVTIKKDKLNG 584
Query: 608 AGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPE 667
G AIYRKPTTN CY++R + +PPMC N++D NAAWYVPLQAC+HRVP K++RG +WPE
Sbjct: 585 IGAAIYRKPTTNNCYDQRIKNSPPMCDNDDDANAAWYVPLQACMHRVPRSKSQRGGKWPE 644
Query: 668 AWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMD 727
WP RLQ PPYWL SSQMGIYG+PAPQDF DY+HW++VVS SYM GLGI+WSNVRN+MD
Sbjct: 645 DWPERLQIPPYWLKSSQMGIYGKPAPQDFEADYEHWKHVVSNSYMKGLGISWSNVRNIMD 704
Query: 728 MRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLL 787
MRAVYGGFAAALKDL+VWV NVVN +SPDTLPIIYERGLFGIYHDWCESFSTYPR+YDLL
Sbjct: 705 MRAVYGGFAAALKDLKVWVFNVVNTDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLL 764
Query: 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFS 847
HADHLFS+LK RC+L PV+AEVDRI RPGGKLIVRDE SA+ EVEN LKSLHWE+ FS
Sbjct: 765 HADHLFSKLKKRCQLAPVLAEVDRIARPGGKLIVRDESSAIEEVENLLKSLHWEVHLIFS 824
Query: 848 KDQEGVLSAQKGNWQPDTY 866
KDQEG+LSAQKG W+P TY
Sbjct: 825 KDQEGLLSAQKGEWRPQTY 843
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476854|ref|XP_002267515.2| PREDICTED: probable methyltransferase PMT27-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/944 (57%), Positives = 656/944 (69%), Gaps = 89/944 (9%)
Query: 7 GLKRSPSSSSSTTSTTVTTIAFIALCVLGVWMLTGKTF-SPPKINTTTSDSGFSFSDEPE 65
G RS S+S + ++TVTT+ F+ALCVLG+WMLT + SP T++ S FS S E
Sbjct: 4 GKARSKRSTSGSYTSTVTTVVFVALCVLGLWMLTSNSIISPQTTARTSTTSSFSASGERH 63
Query: 66 TLKATEKNEHTVFEDNPGVLPIDAIQTGDPNQTHYT-ITNDKGSGGSDKQDEGNASSAGD 124
K +++ + V+ED G LP DAI++ + T +DK K +E AG+
Sbjct: 64 LSKPSDRRDPPVYEDTEGDLPDDAIKSDETKPLQATNDEDDKSQEDKLKSEETPNVEAGE 123
Query: 125 DDSKMSD-----------EQKVKKIIEEQ-------------KKQNEVDTQMSEDKTLIE 160
++++ + E++ ++EE +KQ E +TQ SE+ L +
Sbjct: 124 ENNEKQEPEQETSGDNKNEEENATVVEENPPEIQRKESAEEEEKQKEYETQASEESALTQ 183
Query: 161 NQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNANDPE--NHISDEDKRRSIEKHQEQH 218
NQ K+S E +Q + E+ NQ ++ N E N + E ++R E +
Sbjct: 184 NQ--LAQGIAEKNSEAEETQQTKDEESNVNQGVDENKSEEKNGLEAEVEKREAESQENSQ 241
Query: 219 VQQKEETPFH-----------------------SFSDQIV-----PYLQPPPQQEVQVSD 250
Q + T + SD+ + P +Q E Q ++
Sbjct: 242 ESQNQITEEDQQQRLQQQQQQEHQQKQEQENSDTRSDETLQESSQPEIQEVTSHETQQNE 301
Query: 251 SPKSENVTQETEQENTEETDGKRAK-EHKLTNSNS----------GVSETWNPD------ 293
P+ + + +QE+++ TD K+A+ E+K T S S ET D
Sbjct: 302 EPQQSQLASQ-DQESSQTTDEKKAQIENKKTQSESNQQQRNSNEEAKQETTTQDKAPSSS 360
Query: 294 -------GRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLC 346
G ++G P ES ES+KSWSTQA QS+N+KERRKD +G I GYTW+LC
Sbjct: 361 STISFQSGESSGI-PIESKESKKSWSTQADQSENQKERRKDGP-----DGTIYGYTWQLC 414
Query: 347 NETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRD 406
NET GPD+IPCLDN KAI L HYEHRERHCPEE P CLVPLPE YK P+ WP+SRD
Sbjct: 415 NETAGPDYIPCLDNEKAIMTLHGRKHYEHRERHCPEEPPACLVPLPEMYKSPVEWPQSRD 474
Query: 407 KIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGK 466
KIWY NVPH +LAEVKGHQNWV+VTGE +TFPGGGTQFIHGA+HYIDFI++AVP IAWGK
Sbjct: 475 KIWYHNVPHTLLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGAMHYIDFIEKAVPDIAWGK 534
Query: 467 YTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ 526
TRV LDVGCGVASFGGYLFERDVLTMSFAPKDEH+AQ+QFALERGIPAISAVMG++RL
Sbjct: 535 RTRVILDVGCGVASFGGYLFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLP 594
Query: 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAM 586
FP VFD+VHCARCRVPWH++GG LLLELNRVLRPGGYFVWSATPVYQKL EDVEIW M
Sbjct: 595 FPSRVFDVVHCARCRVPWHVEGGTLLLELNRVLRPGGYFVWSATPVYQKLKEDVEIWKEM 654
Query: 587 SNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVP 646
S LT+SMCWELV+I DKLNS G AIYRKPT+N CY++R PPMC+ ++DPNAAWYVP
Sbjct: 655 SALTMSMCWELVSINRDKLNSVGAAIYRKPTSNVCYDQRKHKRPPMCKTDDDPNAAWYVP 714
Query: 647 LQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYV 706
LQAC+HR PVD AERG++WPE WP RLQ PYWLN +QMGIYGRPAP DF DY+HW+ V
Sbjct: 715 LQACMHRAPVDGAERGTRWPEEWPRRLQVSPYWLNKAQMGIYGRPAPDDFASDYEHWKRV 774
Query: 707 VSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGL 766
V+ SY++GLGI+WSNVRNVMDMRAVYGGFAAALKDL+VWV+NVVN++SPDTLPIIYERGL
Sbjct: 775 VNKSYLNGLGISWSNVRNVMDMRAVYGGFAAALKDLKVWVLNVVNIDSPDTLPIIYERGL 834
Query: 767 FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS 826
FGIYHDWCESFSTYPR+YDLLHADHLFS+LK RCK+ P+MAE+DRIVRPGGKLIVRDE S
Sbjct: 835 FGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKIAPLMAEIDRIVRPGGKLIVRDESS 894
Query: 827 AVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQPDTYQPSS 870
A+ EVEN LKSLHWE+ AFSKDQEG+LSAQK W+PD + SS
Sbjct: 895 AIGEVENLLKSLHWEVHLAFSKDQEGILSAQKSYWRPDIHVASS 938
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585969|ref|XP_002533655.1| ATP binding protein, putative [Ricinus communis] gi|223526450|gb|EEF28726.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/613 (75%), Positives = 525/613 (85%), Gaps = 4/613 (0%)
Query: 259 QETEQENTEETD-GKRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQ 317
Q+TE+E+ E + + + + T SE+ P G + PKES ES+KSWSTQA++
Sbjct: 352 QQTEKESQGENNVSSQETKEETTMEQKSTSESSFPGGGTSTEIPKESKESKKSWSTQATE 411
Query: 318 SQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRE 377
S+N+KERRK ES+G E +I GYTW LCN T GPD+IPCLDN KAI+QLRTT H+EHRE
Sbjct: 412 SENQKERRKGESDGKE---SIYGYTWHLCNVTAGPDYIPCLDNEKAIRQLRTTRHFEHRE 468
Query: 378 RHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITF 437
RHCPEEGP CLVPLP+GYK PI WP SRDKIWY NVPH LAEVKGHQNWV+VTGE +TF
Sbjct: 469 RHCPEEGPTCLVPLPDGYKRPIAWPASRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTF 528
Query: 438 PGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAP 497
PGGGTQFIHGALHYIDF+QQAVP IAWGK TRV LDVGCGVASFGGYLFE+DVLTMSFAP
Sbjct: 529 PGGGTQFIHGALHYIDFVQQAVPNIAWGKRTRVILDVGCGVASFGGYLFEKDVLTMSFAP 588
Query: 498 KDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNR 557
KDEH+AQ+QFALERGIPAISAVMG++RL FP VFD++HCARCRVPWH DGG LLLELNR
Sbjct: 589 KDEHEAQVQFALERGIPAISAVMGSQRLPFPSRVFDVLHCARCRVPWHADGGMLLLELNR 648
Query: 558 VLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPT 617
VLRPGGYFVWSATPVYQKL EDVEIW AMS LTVSMCWELVTIK DKLNS G AIYRKP+
Sbjct: 649 VLRPGGYFVWSATPVYQKLEEDVEIWQAMSALTVSMCWELVTIKKDKLNSVGAAIYRKPS 708
Query: 618 TNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPP 677
+N+CY++R + TPPMC+ ++DPNAAWYVPLQ+C+HRVPVD ERG++WPE WP RLQ PP
Sbjct: 709 SNDCYDQRKKNTPPMCKGDDDPNAAWYVPLQSCMHRVPVDDNERGARWPEDWPSRLQTPP 768
Query: 678 YWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAA 737
YWLNSSQMGIYG+PAPQDF DY HW++VV +SY+ GLGI+WSNVRNVMDMRAVYGGFAA
Sbjct: 769 YWLNSSQMGIYGKPAPQDFATDYAHWKHVVRSSYLKGLGISWSNVRNVMDMRAVYGGFAA 828
Query: 738 ALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797
ALKDL+VWV NVVN +SPDTLPII+ERGLFGIYHDWCESFSTYPR+YDLLHADHLFS+LK
Sbjct: 829 ALKDLKVWVFNVVNTDSPDTLPIIFERGLFGIYHDWCESFSTYPRTYDLLHADHLFSRLK 888
Query: 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQ 857
RCKL PV+AEVDRIVRPGGKLIVRDE S + EVEN LKSL WE+ FSKDQEG+LSAQ
Sbjct: 889 KRCKLAPVLAEVDRIVRPGGKLIVRDESSTIGEVENLLKSLRWEVHLTFSKDQEGLLSAQ 948
Query: 858 KGNWQPDTYQPSS 870
KG+W+P SS
Sbjct: 949 KGDWRPQISAASS 961
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735062|emb|CBI17424.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/892 (58%), Positives = 633/892 (70%), Gaps = 63/892 (7%)
Query: 7 GLKRSPSSSSSTTSTTVTTIAFIALCVLGVWMLTGKTF-SPPKINTTTSDSGFSFSDEPE 65
G RS S+S + ++TVTT+ F+ALCVLG+WMLT + SP T++ S FS S E
Sbjct: 4 GKARSKRSTSGSYTSTVTTVVFVALCVLGLWMLTSNSIISPQTTARTSTTSSFSASGERH 63
Query: 66 TLKATEKNEHTVFEDNPGVLPIDAIQTGDPNQTHYT-ITNDKGSGGSDKQDEGNASSAGD 124
K +++ + V+ED G LP DAI++ + T +DK K +E AG+
Sbjct: 64 LSKPSDRRDPPVYEDTEGDLPDDAIKSDETKPLQATNDEDDKSQEDKLKSEETPNVEAGE 123
Query: 125 DDSKMSD-----------EQKVKKIIEEQKKQ-------------NEVDTQMSEDKTLIE 160
++++ + E++ ++EE + E +TQ SE+ L +
Sbjct: 124 ENNEKQEPEQETSGDNKNEEENATVVEENPPEIQRKESAEEEEKQKEYETQASEESALTQ 183
Query: 161 NQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNANDPE--NHISDEDKRRSIEKHQEQH 218
NQ K+S E +Q + E+ NQ ++ N E N + E ++R EK +
Sbjct: 184 NQ--LAQGIAEKNSEAEETQQTKDEESNVNQGVDENKSEEKNGLEAEVEKREAEKSSQTT 241
Query: 219 VQQKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKEHK 278
++K + ++ Q + + N +E +QE T T K
Sbjct: 242 DEKKAQIE----------------NKKTQSESNQQQRNSNEEAKQETT--TQDKAPSSSS 283
Query: 279 LTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNI 338
+ SG S P ES ES+KSWSTQA QS+N+KERRKD +G I
Sbjct: 284 TISFQSGES----------SGIPIESKESKKSWSTQADQSENQKERRKDGP-----DGTI 328
Query: 339 DGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVP 398
GYTW+LCNET GPD+IPCLDN KAI L HYEHRERHCPEE P CLVPLPE YK P
Sbjct: 329 YGYTWQLCNETAGPDYIPCLDNEKAIMTLHGRKHYEHRERHCPEEPPACLVPLPEMYKSP 388
Query: 399 IPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQA 458
+ WP+SRDKIWY NVPH +LAEVKGHQNWV+VTGE +TFPGGGTQFIHGA+HYIDFI++A
Sbjct: 389 VEWPQSRDKIWYHNVPHTLLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGAMHYIDFIEKA 448
Query: 459 VPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISA 518
VP IAWGK TRV LDVGCGVASFGGYLFERDVLTMSFAPKDEH+AQ+QFALERGIPAISA
Sbjct: 449 VPDIAWGKRTRVILDVGCGVASFGGYLFERDVLTMSFAPKDEHEAQVQFALERGIPAISA 508
Query: 519 VMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578
VMG++RL FP VFD+VHCARCRVPWH++GG LLLELNRVLRPGGYFVWSATPVYQKL E
Sbjct: 509 VMGSQRLPFPSRVFDVVHCARCRVPWHVEGGTLLLELNRVLRPGGYFVWSATPVYQKLKE 568
Query: 579 DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEED 638
DVEIW MS LT+SMCWELV+I DKLNS G AIYRKPT+N CY++R PPMC+ ++D
Sbjct: 569 DVEIWKEMSALTMSMCWELVSINRDKLNSVGAAIYRKPTSNVCYDQRKHKRPPMCKTDDD 628
Query: 639 PNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTR 698
PNAAWYVPLQAC+HR PVD AERG++WPE WP RLQ PYWLN +QMGIYGRPAP DF
Sbjct: 629 PNAAWYVPLQACMHRAPVDGAERGTRWPEEWPRRLQVSPYWLNKAQMGIYGRPAPDDFAS 688
Query: 699 DYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTL 758
DY+HW+ VV+ SY++GLGI+WSNVRNVMDMRAVYGGFAAALKDL+VWV+NVVN++SPDTL
Sbjct: 689 DYEHWKRVVNKSYLNGLGISWSNVRNVMDMRAVYGGFAAALKDLKVWVLNVVNIDSPDTL 748
Query: 759 PIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGK 818
PIIYERGLFGIYHDWCESFSTYPR+YDLLHADHLFS+LK RCK+ P+MAE+DRIVRPGGK
Sbjct: 749 PIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKIAPLMAEIDRIVRPGGK 808
Query: 819 LIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQPDTYQPSS 870
LIVRDE SA+ EVEN LKSLHWE+ AFSKDQEG+LSAQK W+PD + SS
Sbjct: 809 LIVRDESSAIGEVENLLKSLHWEVHLAFSKDQEGILSAQKSYWRPDIHVASS 860
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134182|ref|XP_002327776.1| predicted protein [Populus trichocarpa] gi|222836861|gb|EEE75254.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/634 (72%), Positives = 528/634 (83%), Gaps = 25/634 (3%)
Query: 255 ENVTQETEQENTEETDGKR---------AKEHKLTNSNSGVSETWNPDGRNTGSS----- 300
+N +QE++ E +EE KR H+ S V N + + SS
Sbjct: 315 QNSSQESQNEVSEEDKKKRMQQQQQQQQTSHHQEAEKESQVDSNTNQETKQDSSSGESAF 374
Query: 301 --------PKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGP 352
PKES ES+KSWSTQA++S+N+KERRK+ES+G N ++ GYTW+LCN T GP
Sbjct: 375 PGSENPGIPKESKESKKSWSTQAAESENQKERRKEESDG---NDSMYGYTWQLCNVTAGP 431
Query: 353 DFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRN 412
D+IPCLDN KA++QL TT H+EHRERHCPE GP CLVP EGYK PI WP+SRDKIWY N
Sbjct: 432 DYIPCLDNEKALRQLHTTGHFEHRERHCPEVGPTCLVPPSEGYKRPITWPQSRDKIWYHN 491
Query: 413 VPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSL 472
VPH LAEVKGHQNW++VTGE +TFPGGGTQFIHGALHYIDF+QQAVPKI WGK+TRV L
Sbjct: 492 VPHTKLAEVKGHQNWIKVTGEFLTFPGGGTQFIHGALHYIDFVQQAVPKIKWGKHTRVIL 551
Query: 473 DVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVF 532
DVGCGVASFGGY+FERDVLTMSFAPKDEH+AQ+QFALERGIPAISAVMG++RL FP VF
Sbjct: 552 DVGCGVASFGGYIFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSRVF 611
Query: 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVS 592
DL+HCARCRVPWH +GGKLLLELNRVLRPGGYFVWSATPVYQKL EDVEIW AMS LT S
Sbjct: 612 DLIHCARCRVPWHAEGGKLLLELNRVLRPGGYFVWSATPVYQKLPEDVEIWQAMSALTAS 671
Query: 593 MCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVH 652
MCWELVTI+ DKLN G AIYRKPTTN CY++R + +PPMC++++D NAAWYVPLQAC+H
Sbjct: 672 MCWELVTIQNDKLNGIGAAIYRKPTTNNCYDQRKKNSPPMCKSDDDANAAWYVPLQACMH 731
Query: 653 RVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYM 712
RVPV K ERG++WPE WP RLQ PPYWLNSSQMGIYG+PAPQDF DY+HW++VVS SYM
Sbjct: 732 RVPVSKTERGAKWPEDWPQRLQTPPYWLNSSQMGIYGKPAPQDFATDYEHWKHVVSNSYM 791
Query: 713 SGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHD 772
LGI+WSNVRNVMDMRAVYGGFAAALKDL++WV NVVN +SPDTLPIIYERGLFGIYHD
Sbjct: 792 KALGISWSNVRNVMDMRAVYGGFAAALKDLKIWVFNVVNTDSPDTLPIIYERGLFGIYHD 851
Query: 773 WCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVE 832
WCESFS+YPR+YDLLHADHLFS+LK RC+L P++AEVDRIVRPGGKLIVRDE SA+ EVE
Sbjct: 852 WCESFSSYPRTYDLLHADHLFSKLKKRCQLAPLLAEVDRIVRPGGKLIVRDESSAIGEVE 911
Query: 833 NFLKSLHWEILFAFSKDQEGVLSAQKGNWQPDTY 866
N LKSLHWE+ FSKDQEG+LSAQKG+W+P TY
Sbjct: 912 NLLKSLHWEVHLTFSKDQEGLLSAQKGDWRPQTY 945
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230391|ref|NP_190676.1| putative methyltransferase PMT27 [Arabidopsis thaliana] gi|75265648|sp|Q9SD39.1|PMTR_ARATH RecName: Full=Probable methyltransferase PMT27 gi|6562259|emb|CAB62629.1| putative protein [Arabidopsis thaliana] gi|332645225|gb|AEE78746.1| putative methyltransferase PMT27 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/911 (55%), Positives = 632/911 (69%), Gaps = 60/911 (6%)
Query: 1 MPLGK-RGLKRSPSSSSSTTSTTVTTIAFIALCVLGVWMLTGKTFSPPKIN--------- 50
M G+ RG KR+ S+S+ ++T+T + F+ALCV GVWML+ + PP+I
Sbjct: 1 MAFGRGRGNKRT---STSSYASTITMVIFVALCVFGVWMLSSNSVIPPQITQGSTRAAVA 57
Query: 51 -TTTSDSGFSFS--DEPETLKATEKNEHTVFEDNPGVLPIDAIQTGDPNQ---------- 97
T SD S + DEPE K E +E FEDNPG LP DA+++ D +
Sbjct: 58 ETERSDVSASSNGNDEPEPTKQ-ESDEQQAFEDNPGKLPDDAVKSEDEQRKSAKEKSETT 116
Query: 98 THYTITNDKGSGGSDKQDEGNASSAGDDDSKM--SDEQKVKKIIEE----QKKQNEVDTQ 151
+ T T + DK E G ++ + S+E ++KK+++E QK+Q + D
Sbjct: 117 SSKTQTQETQQNNDDKISEEKEKDNGKENQTVQESEEGQMKKVVKEFEKEQKQQRDEDAG 176
Query: 152 MSEDKTLIE--------------NQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNAND 197
T + N+Q D+N + + KQ+Q E +T +
Sbjct: 177 TQPKGTQGQEQGQGKEQPDVEQGNKQGQEQDSNTDVTFTDATKQEQPMETGQGETSETSK 236
Query: 198 PENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENV 257
E + E++ E+ +Q+ ++ + + ++ + ++ + ++
Sbjct: 237 NEENGQPEEQNSGNEETGQQNEEKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEE 296
Query: 258 TQETEQENTEETDGKR-AKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQAS 316
++ EN E+ + ++ K+H+ + SG PKES ES+KSW +QA+
Sbjct: 297 ESTSKDENMEQQEERKDEKKHEQGSEASGFG----------SGIPKESAESQKSWKSQAT 346
Query: 317 QSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHR 376
+S++EK+R+ ES E +DG W LCN T G D+IPCLDN +AI +LR+ H+EHR
Sbjct: 347 ESKDEKQRQTSESNTVERI--MDGNAWVLCNATAGTDYIPCLDNEEAIMKLRSRRHFEHR 404
Query: 377 ERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIIT 436
ERHCPE+ P CLVPLPEGYK I WP+SRDKIWY NVPH LAEVKGHQNWV+VTGE +T
Sbjct: 405 ERHCPEDPPTCLVPLPEGYKEAIKWPESRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLT 464
Query: 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFA 496
FPGGGTQFIHGALHYIDF+QQ++ IAWGK TRV LDVGCGVASFGG+LFERDV+ MS A
Sbjct: 465 FPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVGCGVASFGGFLFERDVIAMSLA 524
Query: 497 PKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELN 556
PKDEH+AQ+QFALER IPAISAVMG+KRL FP VFDL+HCARCRVPWH +GG LLLELN
Sbjct: 525 PKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLLLELN 584
Query: 557 RVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKP 616
R+LRPGGYFVWSATPVYQKL EDV+IW MS LT S+CWELVTI DKLN G AIY+KP
Sbjct: 585 RMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAIYQKP 644
Query: 617 TTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRP 676
TNECYEKR PP+C+N +D NAAWYVPLQAC+H+VP + ERGS+WP WP RLQ P
Sbjct: 645 ATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTP 704
Query: 677 PYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFA 736
PYWLNSSQMGIYG+PAP+DFT DY+HW++VVS YM+ +GI+WSNVRNVMDMRAVYGGFA
Sbjct: 705 PYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFA 764
Query: 737 AALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796
AALKDLQVWVMNVVN+NSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS+L
Sbjct: 765 AALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKL 824
Query: 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSA 856
+ RC LVPVMAEVDRIVRPGGKLIVRDE + + EVEN LKSLHW++ FSK QEG+LSA
Sbjct: 825 RTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWDVHLTFSKHQEGILSA 884
Query: 857 QKGNWQPDTYQ 867
QKG W+P+T Q
Sbjct: 885 QKGFWRPETSQ 895
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495388|ref|XP_003516560.1| PREDICTED: probable methyltransferase PMT27-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/871 (55%), Positives = 599/871 (68%), Gaps = 106/871 (12%)
Query: 14 SSSSTTSTTVTTIAFIALCVLGVWMLTGKTFSPPKINT--------------TTSDSGFS 59
SSS + +T+T + FIALCV GVWMLT + PP+ + TT+D S
Sbjct: 10 SSSPSYVSTLTILVFIALCVFGVWMLTSNSVVPPQTQSDEDTSTRTAIDTSATTNDELSS 69
Query: 60 FSDEPETL-KATEK---NEHTVFEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQD 115
D ET K+ EK N V+ DNPG LP DAI+ D N +
Sbjct: 70 SEDSHETTSKSGEKEKDNPTAVYGDNPGHLPDDAIKADDNNSNN---------------- 113
Query: 116 EGNASSAGDDDSKMSDEQKVKKIIEEQKKQNEV-DTQMSEDKTLIENQQFFVFDNNAKSS 174
E QK+Q ++ D+Q+SE+ +L + Q + A S
Sbjct: 114 ------------------------EPQKQQVDISDSQLSEESSLTQKDQVTAVIHEAGSD 149
Query: 175 TEEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQI 234
++ I ++PE + E++QEQ Q T S +++
Sbjct: 150 SDVKI----------------SEPE---------KQDEENQEQQDVQSFGTRGGSKTEED 184
Query: 235 VPYLQPPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDG 294
+ + + V + K E V +T Q++++ ++S ET NP
Sbjct: 185 EANKEQLREDKGVVEVAKKYEKVPADTSQQDSDAAS---------KGTSSQEEETQNPKA 235
Query: 295 RNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDF 354
G +S+K WSTQ QSQ E +R+ ES DE ++ +TW LCN T G D+
Sbjct: 236 EKKGG------KSKKPWSTQVDQSQQENKRQTVESNSDE---KLEDHTWYLCNVTAGADY 286
Query: 355 IPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVP 414
IPCLDN KA++QLR+T HYEHRERHCPE+ P CLVP+P+GYK PI WP SRDKIWY NVP
Sbjct: 287 IPCLDNEKALKQLRSTKHYEHRERHCPEDPPTCLVPIPKGYKTPIEWPSSRDKIWYHNVP 346
Query: 415 HPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDV 474
H +LAEVKGHQNWV+V GE +TFPGGGTQFIHGALHYIDF+QQA P IAWGK TRV LDV
Sbjct: 347 HKLLAEVKGHQNWVKVAGEFLTFPGGGTQFIHGALHYIDFVQQAEPNIAWGKRTRVILDV 406
Query: 475 GCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDL 534
GCGV SFGG+LFERDV+ MSFAPKDEH+AQ+QFALERGIPAISAVMG++RL FP +VFDL
Sbjct: 407 GCGVGSFGGFLFERDVIAMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSSVFDL 466
Query: 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMC 594
VHCARCRVPWH+DGG LLLELNRVLRPGGYFVWSATPVYQKL EDVEIW M++LT S+C
Sbjct: 467 VHCARCRVPWHLDGGMLLLELNRVLRPGGYFVWSATPVYQKLEEDVEIWKEMTSLTKSIC 526
Query: 595 WELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRV 654
WELVTI D LN G A+YRKPT+NECYE+R + PP+C++++DPNAAWYVPLQAC+H+V
Sbjct: 527 WELVTINKDGLNKVGAAVYRKPTSNECYEQREKNEPPLCKDDDDPNAAWYVPLQACIHKV 586
Query: 655 PVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSG 714
PVD+AERG++WPE WP RLQ+PPYWLN SQ+GIYG+PAPQDF D + W+ VV +S
Sbjct: 587 PVDQAERGAKWPETWPRRLQKPPYWLNKSQIGIYGKPAPQDFVADNERWKNVVEE--LSN 644
Query: 715 LGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWC 774
GI+ SNVRNVMDMRAVYGGFAAAL+DL VWV NVVNV+SPDTLPII+ERGLFGIYHDWC
Sbjct: 645 AGISLSNVRNVMDMRAVYGGFAAALRDLPVWVFNVVNVDSPDTLPIIFERGLFGIYHDWC 704
Query: 775 ESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENF 834
ESF+TYPR++D+LHAD+LFS+LK+RCKLV VMAEVDRI+RPGGKLIVRDE + + EVE
Sbjct: 705 ESFNTYPRTFDILHADNLFSKLKDRCKLVAVMAEVDRIIRPGGKLIVRDESTTLGEVETL 764
Query: 835 LKSLHWEILFAFSKDQEGVLSAQKGNWQPDT 865
LKSLHWEI+ +SK QEG+L A++G W+PD+
Sbjct: 765 LKSLHWEII--YSKIQEGMLCAKRGKWRPDS 793
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483593|ref|XP_003612083.1| Ankyrin-like protein [Medicago truncatula] gi|355513418|gb|AES95041.1| Ankyrin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/902 (53%), Positives = 592/902 (65%), Gaps = 130/902 (14%)
Query: 22 TVTTIAFIALCVLGVWMLTG---------KTFSPPKINTT-----TSDS---GFSFSDEP 64
T+ T+ FIALCV GVWML KT S +I +T TSD+ FS SD+
Sbjct: 20 TLVTLGFIALCVFGVWMLNSNSSNSMFSSKTQSEEEITSTRTAIDTSDNTNNDFSTSDDS 79
Query: 65 ETLKATEKNE------------------HTVFEDNPGVLPIDAIQTGDPNQTHYTITNDK 106
+ K E V+ DNPG LP DAI++ D N + ND
Sbjct: 80 QQTKTKNTEELVQTTTVVPKIEEQKETPTAVYGDNPGHLPDDAIKSDDKN-----LNND- 133
Query: 107 GSGGSDKQDEGNASSAGDDDSKMSDEQKVKKIIEEQKKQNEV--DTQMSEDKTLIENQQF 164
Q KQ V D+Q+SE+ +L + +Q
Sbjct: 134 -----------------------------------QNKQQSVVSDSQISEESSLTQKEQV 158
Query: 165 FVF-----DNNAKSSTEEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHV 219
DN+ K S E ++Q + + N+ ++ ++ E ++ ++QEQ
Sbjct: 159 SAIHESKSDNDGKVSESEKVQQSNIESSGENKKEEQDNTKSQDVTESNDVNVAENQEQST 218
Query: 220 QQKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENVTQETEQENTEETDG-----KRA 274
Q QQ+V D+ S+N E +E E G + +
Sbjct: 219 VQ---------------------QQDVPTFDTQGSKNDEDEANKEQLREDKGEIEEQQNS 257
Query: 275 KEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEG 334
K K + + ET P G +S+K WSTQA QSQNEK+R+K GDE
Sbjct: 258 KLSKTASEKNEGEETVKPKAEKKGG------KSKKPWSTQADQSQNEKKRQK----GDES 307
Query: 335 NGN---IDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPL 391
GN + W LCN T G D+IPCLDN KAI++LR+T H+EHRERHCPEEGP CLVPL
Sbjct: 308 GGNEKKLQDNKWSLCNVTAGADYIPCLDNEKAIKKLRSTKHFEHRERHCPEEGPTCLVPL 367
Query: 392 PEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHY 451
P GYK I WP SRDK+WY NVPH LAEVKGHQNWV+V+GE +TFPGGGTQFIHGALHY
Sbjct: 368 PNGYKTSIKWPNSRDKVWYHNVPHTSLAEVKGHQNWVKVSGEFLTFPGGGTQFIHGALHY 427
Query: 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALER 511
IDF+QQA P IAWGK TRV LDVGCGV SFGGYLF+RDV+ MS APKDEH+AQ+QFALER
Sbjct: 428 IDFLQQAEPDIAWGKRTRVILDVGCGVGSFGGYLFDRDVVAMSLAPKDEHEAQVQFALER 487
Query: 512 GIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571
GIPAISAVMG++RL FP VFDL+HCARCRVPWH +GGKLLLELNRVLRPGGYF WSATP
Sbjct: 488 GIPAISAVMGSQRLPFPNGVFDLIHCARCRVPWHEEGGKLLLELNRVLRPGGYFAWSATP 547
Query: 572 VYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPP 631
VYQKL EDVEIW M++LT +MCWELVTI DKLN G AIYRKP +N+CYE+R + PP
Sbjct: 548 VYQKLEEDVEIWKEMTSLTKAMCWELVTINKDKLNHVGVAIYRKPASNDCYERREKSQPP 607
Query: 632 MCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRP 691
+C++++DPNAAWYVPLQAC+H+VPV+KA+RG++WPE WP RL + PYWLN+SQ+GIYG+P
Sbjct: 608 LCKDDDDPNAAWYVPLQACMHKVPVNKADRGAKWPEVWPKRLHKAPYWLNNSQVGIYGKP 667
Query: 692 APQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVN 751
AP+DF D + W+ V +S +G+ WSNVRN MDMRAVYGGFAAAL++L +WV N+VN
Sbjct: 668 APKDFVEDTERWKNAVDE--LSNIGVTWSNVRNAMDMRAVYGGFAAALRELPIWVFNIVN 725
Query: 752 VNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR----CKLVPVMA 807
+++PDTLPIIYERGLFGIYHDWCESFSTYPR+YDLLHAD LFS+ K R CKL PV+A
Sbjct: 726 IDAPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADKLFSKTKERYEWKCKLNPVIA 785
Query: 808 EVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQPDTYQ 867
EVDR++RPGG IVRDE S ++EVE LKSLHWEI +SK+QEG+LSA+KG W+P +
Sbjct: 786 EVDRMMRPGGMFIVRDESSIISEVETLLKSLHWEI--TYSKEQEGLLSAKKGTWRPKSVA 843
Query: 868 PS 869
S
Sbjct: 844 SS 845
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516372|ref|XP_003526869.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/869 (54%), Positives = 589/869 (67%), Gaps = 80/869 (9%)
Query: 1 MPLGKRGLKRSPSSSSSTTSTTVTTIAFIALCVLGVWMLTGKTFSPPKINTTTSDSGFSF 60
M LGK R SS+ +TVT + F+ALC++GVWM+T + P + ++
Sbjct: 1 MALGKYA--RVDGRRSSSWCSTVTVVVFVALCLVGVWMMTSSSVVPVRNGDEAQENKNQV 58
Query: 61 SDEPETLKATEKNEHTV------FEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQ 114
++ E + E FEDNPG LP DA + GD N + ++ S SDKQ
Sbjct: 59 KEQTEPTEVKEAVSEVSNSNMRQFEDNPGDLPEDATK-GDSN-----VASEDNSNLSDKQ 112
Query: 115 DEGNASSAGDDDSKMSDEQKVKKIIEEQKKQNEVDTQMSEDKTLIENQQFFVFDNNAKSS 174
+E S+E V++ ++ K ++ D + E+ + EN+ N+K S
Sbjct: 113 EE------------KSEENPVERSSDDTKSEDVEDKKTEEEGSNTENESNSDSTENSKDS 160
Query: 175 TEEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSDQI 234
E K+ SDE++++S E+ +ET +D
Sbjct: 161 DETSTKESD-------------------SDENEKKSDSDESEKQSNDTDET-----TDTK 196
Query: 235 VPYLQPPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWNPDG 294
+ E +V +S E+ +E+ ++T K +KE + + S + E
Sbjct: 197 I---------EEKVEESDNKESDENSSEKNINDDTKQKSSKEVYPSGAQSELQE------ 241
Query: 295 RNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDF 354
ES SWSTQA+QS+NEK+ + E + GY W+LCN T GPDF
Sbjct: 242 --------ESTAETGSWSTQAAQSKNEKDSQ-------ESSKQPTGYKWKLCNVTAGPDF 286
Query: 355 IPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVP 414
IPCLDN KAI+ L++T HYEHRERHCPEE P CLVP+PEGYK PI WPKSR+KIWY NVP
Sbjct: 287 IPCLDNWKAIRSLQSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNVP 346
Query: 415 HPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDV 474
H LAEVKGHQNWV+VTGE +TFPGGGTQF HGALHYIDFIQ+ VP IAWGK TRV LDV
Sbjct: 347 HTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDV 406
Query: 475 GCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDL 534
GCGVASFGG+LF+RDVL MS APKDEH+AQ+QFALERGIPAISAVMGTKRL FP VFD+
Sbjct: 407 GCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDV 466
Query: 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMC 594
VHCARCRVPWHI+GGKLLLELNRVLRPGG+FVWSATP+YQKL EDVEIW AM LT +MC
Sbjct: 467 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKALTKAMC 526
Query: 595 WELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRV 654
WE+V+I D +N G A+YRKPT+NECYE+R++ PP+C + +DPNAAW + LQAC+H+
Sbjct: 527 WEVVSISKDPVNGVGVAVYRKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACLHKA 586
Query: 655 PVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSG 714
PV ERGS+ PE WP RL + PYWL+SSQ+G+YG+PAPQDFT DY+HW+ VVS SY+ G
Sbjct: 587 PVSSKERGSKLPELWPARLIKVPYWLSSSQVGVYGKPAPQDFTADYEHWKRVVSKSYLDG 646
Query: 715 LGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWC 774
+GI WSNVRNVMDMR++YGGFAAAL+DL VWVMNVV ++SPDTLPIIYERGLFGIYHDWC
Sbjct: 647 MGIKWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIYERGLFGIYHDWC 706
Query: 775 ESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENF 834
ESFSTYPR+YDLLHADHLFS+LK RC L V+AE DRI+RP GKLIVRD + E+E+
Sbjct: 707 ESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIIEELESM 766
Query: 835 LKSLHWEILFAFSKDQEGVLSAQKGNWQP 863
+S+ W++ +SKD+EG+L +K W+P
Sbjct: 767 ARSMQWKVRMTYSKDKEGLLCVEKSKWRP 795
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 870 | ||||||
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.652 | 0.634 | 0.753 | 7.5e-264 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.872 | 0.915 | 0.544 | 3.2e-232 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.640 | 0.723 | 0.669 | 5e-225 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.664 | 0.750 | 0.644 | 1e-224 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.557 | 0.823 | 0.566 | 2.2e-162 | |
| TAIR|locus:2016392 | 724 | AT1G19430 [Arabidopsis thalian | 0.647 | 0.777 | 0.460 | 2.2e-150 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.589 | 0.752 | 0.476 | 1.4e-135 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.582 | 0.730 | 0.480 | 4.2e-134 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.573 | 0.761 | 0.486 | 6.4e-131 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.574 | 0.822 | 0.464 | 6.9e-118 |
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2408 (852.7 bits), Expect = 7.5e-264, Sum P(2) = 7.5e-264
Identities = 430/571 (75%), Positives = 487/571 (85%)
Query: 298 GSS-PKESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIP 356
GS PKES ES+KSW +QA++S++EK+R+ ES E +DG W LCN T G D+IP
Sbjct: 327 GSGIPKESAESQKSWKSQATESKDEKQRQTSESNTVERI--MDGNAWVLCNATAGTDYIP 384
Query: 357 CLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHP 416
CLDN +AI +LR+ H+EHRERHCPE+ P CLVPLPEGYK I WP+SRDKIWY NVPH
Sbjct: 385 CLDNEEAIMKLRSRRHFEHRERHCPEDPPTCLVPLPEGYKEAIKWPESRDKIWYHNVPHT 444
Query: 417 MLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGC 476
LAEVKGHQNWV+VTGE +TFPGGGTQFIHGALHYIDF+QQ++ IAWGK TRV LDVGC
Sbjct: 445 KLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVGC 504
Query: 477 GVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVH 536
GVASFGG+LFERDV+ MS APKDEH+AQ+QFALER IPAISAVMG+KRL FP VFDL+H
Sbjct: 505 GVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIH 564
Query: 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWE 596
CARCRVPWH +GG LLLELNR+LRPGGYFVWSATPVYQKL EDV+IW MS LT S+CWE
Sbjct: 565 CARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWE 624
Query: 597 LVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPV 656
LVTI DKLN G AIY+KP TNECYEKR PP+C+N +D NAAWYVPLQAC+H+VP
Sbjct: 625 LVTINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPT 684
Query: 657 DKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLG 716
+ ERGS+WP WP RLQ PPYWLNSSQMGIYG+PAP+DFT DY+HW++VVS YM+ +G
Sbjct: 685 NVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIG 744
Query: 717 INWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCES 776
I+WSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVN+NSPDTLPIIYERGLFGIYHDWCES
Sbjct: 745 ISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCES 804
Query: 777 FSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLK 836
FSTYPRSYDLLHADHLFS+L+ RC LVPVMAEVDRIVRPGGKLIVRDE + + EVEN LK
Sbjct: 805 FSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLK 864
Query: 837 SLHWEILFAFSKDQEGVLSAQKGNWQPDTYQ 867
SLHW++ FSK QEG+LSAQKG W+P+T Q
Sbjct: 865 SLHWDVHLTFSKHQEGILSAQKGFWRPETSQ 895
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 3.2e-232, P = 3.2e-232
Identities = 429/788 (54%), Positives = 529/788 (67%)
Query: 87 IDAIQTGDPNQTHYTITNDKGSGGSDKQDEGNASSAGDDDSKMSDXXXXXXXXXXXXXXX 146
+D + + + +T G K ++ + +D K D
Sbjct: 49 VDEVSLDNKDGIKKQMTPPAEEGNGQKFEDAPVETPNED--KKGDGDASLPKEDESSSKQ 106
Query: 147 XXDTQMSEDKTLIENQQFFVFDNNAKSSTE--EMIKQQQLRENAGNQTLNANDPENHISD 204
+ E+KT E F + KS TE E K EN G L D + + D
Sbjct: 107 DNQEEKKEEKTKEE----FTPSSETKSETEGGEDQKDDSKSENGGGGDL---DEKKDLKD 159
Query: 205 EDKRRSIXXXXXXXXXXXXXTPFHSFSDQIVPYLQPPPQQEVQVSDSPKSXXXXXXXXXX 264
+ + + + ++ + D KS
Sbjct: 160 NSDEENPDTNEKQTKPETEDNELGEDGENQKQF-ESDNGEKKSIDDDKKSSDDDKENKTG 218
Query: 265 XXXXXDGKRAKEHKLTNSNSGVSETWNPDGRNTG--SSPKESLE-------SRKSWSTQA 315
+ K KE+ TN + V + +G S P LE S+STQA
Sbjct: 219 NEDT-ETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQA 277
Query: 316 SQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEH 375
++S+NEKE +K GD+ +D Y W LCN T GPD+IPCLDN +AI+ L +T HYEH
Sbjct: 278 TESKNEKEAQK--GSGDK----LD-YKWALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEH 330
Query: 376 RERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEII 435
RERHCP+ P CLVPLP+GYK PI WPKSR+KIWY NVPH LAE KGHQNWV+VTGE +
Sbjct: 331 RERHCPDSPPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYL 390
Query: 436 TFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSF 495
TFPGGGTQF HGALHYIDFIQ++VP IAWGK +RV LDVGCGVASFGG+LF+RDV+TMS
Sbjct: 391 TFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSL 450
Query: 496 APKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLEL 555
APKDEH+AQ+QFALERGIPAISAVMGT RL FP VFD+VHCARCRVPWHI+GGKLLLEL
Sbjct: 451 APKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLEL 510
Query: 556 NRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615
NRVLRPGG+FVWSATPVYQK EDVEIW AMS L MCWELV+I D +N G A YRK
Sbjct: 511 NRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVATYRK 570
Query: 616 PTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQR 675
PT+NECY+ R++ PP+C + +DPNA+W VPLQAC+H P DK +RGSQWPE WP RL++
Sbjct: 571 PTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPARLEK 630
Query: 676 PPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGF 735
P+WL+SSQ G+YG+ AP+DF+ DY+HW+ VV+ SY++GLGINW++VRNVMDMRAVYGGF
Sbjct: 631 APFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVYGGF 690
Query: 736 AAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795
AAAL+DL+VWVMNVV ++SPDTL IIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS+
Sbjct: 691 AAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSK 750
Query: 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLS 855
LK RC L V+AEVDR++RP GKLIVRD+ + +VE +K++ WE+ +SK++EG+LS
Sbjct: 751 LKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLS 810
Query: 856 AQKGNWQP 863
QK W+P
Sbjct: 811 VQKSIWRP 818
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2131 (755.2 bits), Expect = 5.0e-225, Sum P(2) = 5.0e-225
Identities = 377/563 (66%), Positives = 456/563 (80%)
Query: 302 KESLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNT 361
KES +WSTQ +SQNEK+ ++ D+ + Y W+ CN T GPD+IPCLDN
Sbjct: 204 KESSTGDGAWSTQLVESQNEKKAQQSSISKDQSS-----YGWKTCNVTAGPDYIPCLDNW 258
Query: 362 KAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEV 421
+AI++L TT HYEHRERHCPEE P CLV LP+GYK I WPKSR+KIWY NVPH LAE+
Sbjct: 259 QAIKKLHTTMHYEHRERHCPEESPHCLVSLPDGYKRSIKWPKSREKIWYNNVPHTKLAEI 318
Query: 422 KGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASF 481
KGHQNWV+++GE +TFPGGGTQF +GALHYIDFIQQ+ P IAWG TRV LDVGCGVASF
Sbjct: 319 KGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASF 378
Query: 482 GGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541
GGYLFERDVL +SFAPKDEH+AQ+QFALERGIPA+ VMGTKRL FP +VFDL+HCARCR
Sbjct: 379 GGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCR 438
Query: 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIK 601
VPWHI+GGKLLLELNR LRPGG+FVWSATPVY+K ED IW AMS LT +MCW+LVTIK
Sbjct: 439 VPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIK 498
Query: 602 MDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAER 661
DKLN G AIY+KPT+N+CY KR Q PP+C++ +D NAAW VPL+AC+H+V D ++R
Sbjct: 499 KDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKR 558
Query: 662 GSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSN 721
G+ WP WP R++ P WL+S Q G+YG+PAP+DFT D + W+ +VS +Y++ +GI+WSN
Sbjct: 559 GAVWPNMWPERVETAPEWLDS-QEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSN 617
Query: 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP 781
VRNVMDMRAVYGGFAAALKDL++WVMNVV V++PDTLPIIYERGLFGIYHDWCESF+TYP
Sbjct: 618 VRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYP 677
Query: 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWE 841
R+YDLLHADHLFS L+ RC LV VMAE+DRI+RP G I+RD+ + EVE +KS+ W+
Sbjct: 678 RTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWK 737
Query: 842 ILFAFSKDQEGVLSAQKGNWQPD 864
+ SKD EG+LS +K W+P+
Sbjct: 738 VKMTQSKDNEGLLSIEKSWWRPE 760
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2129 (754.5 bits), Expect = 1.0e-224, Sum P(2) = 1.0e-224
Identities = 382/593 (64%), Positives = 469/593 (79%)
Query: 272 KRAKEHK-LTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESE 330
K+++E+ T ++ S+ P G + KES +WSTQ +SQNEK+ +
Sbjct: 181 KKSEENAGETEESTEKSKDVFPAG-DQAEITKESSTGSGAWSTQLVESQNEKKAQ----- 234
Query: 331 GDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVP 390
+ W++CN T GPD+IPCLDN +AI++L +T HYEHRERHCPEE P CLV
Sbjct: 235 -------VSSIKWKVCNVTAGPDYIPCLDNWQAIRKLHSTKHYEHRERHCPEESPRCLVS 287
Query: 391 LPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALH 450
LPEGYK I WPKSR+KIWY N+PH LAEVKGHQNWV+++GE +TFPGGGTQF +GALH
Sbjct: 288 LPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALH 347
Query: 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALE 510
YIDF+Q++ P IAWG TRV LDVGCGVASFGGYLF+RDVL +SFAPKDEH+AQ+QFALE
Sbjct: 348 YIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALE 407
Query: 511 RGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570
RGIPA+S VMGTKRL FP +VFDL+HCARCRVPWHI+GGKLLLELNR LRPGG+FVWSAT
Sbjct: 408 RGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSAT 467
Query: 571 PVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTP 630
PVY+K EDV IW AMS LT +MCWEL+TIK D+LN G AIY+KP +N+CY +R+Q P
Sbjct: 468 PVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEP 527
Query: 631 PMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGR 690
P+C++ +D NAAW VPL+AC+H+V D ++RG+ WPE+WP R++ P WL+S Q G+YG+
Sbjct: 528 PLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDS-QEGVYGK 586
Query: 691 PAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVV 750
PA +DFT D++ W+ +VS SY++G+GI+WS VRNVMDMRAVYGGFAAALKDL++WVMNVV
Sbjct: 587 PAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVV 646
Query: 751 NVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVD 810
++SPDTLPIIYERGLFGIYHDWCESFSTYPR+YDLLHADHLFS LK RC LV VMAEVD
Sbjct: 647 PIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVD 706
Query: 811 RIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQP 863
RI+RP G IVRD+ + E+E +KS+ W + SKD EG+LS QK W+P
Sbjct: 707 RILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRP 759
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
Identities = 282/498 (56%), Positives = 353/498 (70%)
Query: 343 WRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCLVPLPEGYKVPIPWP 402
W LC D+IPCLDN AI+QL++ H EHRERHCPE P CL+PLP+ YK P+PWP
Sbjct: 80 WDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSPKCLLPLPDNYKPPVPWP 139
Query: 403 KSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKI 462
KSRD IWY NVPHP L E K QNWV+ GE + FPGGGTQF G HY++FI++A+P I
Sbjct: 140 KSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPSI 199
Query: 463 AWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT 522
WGK RV LDVGCGVASFGG L ++DV+TMSFAPKDEH+AQIQFALERGIPA +V+GT
Sbjct: 200 KWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSVIGT 259
Query: 523 KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582
++L FP N FDL+HCARCRV W DGGK LLELNRVLRPGG+F+WSATPVY+ D I
Sbjct: 260 QQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRDSRI 319
Query: 583 WNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAA 642
WN M +LT S+CW++VT +D + G IY+KPT+ CY KR+ PP+C +E N +
Sbjct: 320 WNEMVSLTKSICWKVVTKTVDS-SGIGLVIYQKPTSESCYNKRSTQDPPLCDKKE-ANGS 377
Query: 643 WYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKH 702
WYVPL C+ ++P + WPE WP RL + + + + +D +
Sbjct: 378 WYVPLAKCLSKLPSGNVQ---SWPELWPKRLVS----VKPQSISVKA----ETLKKDTEK 426
Query: 703 WRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIY 762
W VS Y+ L +NWS VRNVMDM A +GGFAAAL +L +WVMNVV V+ PDTL ++Y
Sbjct: 427 WSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVY 486
Query: 763 ERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822
+RGL G+YHDWCES +TYPR+YDLLH+ L L RC++V V+AE+DRIVRPGG L+V+
Sbjct: 487 DRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQ 546
Query: 823 DEPSAVTEVENFLKSLHW 840
D + ++E+ L SLHW
Sbjct: 547 DNMETIMKLESILGSLHW 564
|
|
| TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1447 (514.4 bits), Expect = 2.2e-150, Sum P(2) = 2.2e-150
Identities = 276/599 (46%), Positives = 390/599 (65%)
Query: 270 DGKRAKEHKLTNSNSGVSETWNPDGR--NTGSSPKESLESRKSWSTQASQSQNEKERRKD 327
DG+ E ++ N G S+ N DG ++ +S E +E + + + ++ K+R++
Sbjct: 157 DGEEGTE---SDGNEGESDG-NGDGSVDDSSASVDEEVEEKNE---EVTVNEISKKRKR- 208
Query: 328 ESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVC 387
+G + + Y+WRLCN + +++PC+DN I +L++ Y HRER CP++ +C
Sbjct: 209 --KGPVFDPKAE-YSWRLCNTRSKHNYMPCIDNDGLIGRLQS---YRHRERSCPKKPVMC 262
Query: 388 LVPLP-EGYKVPIPWPKSRDKIWYRNVPHPMLAE-VKGHQNWVRVTGEIITFPGGGTQFI 445
LVPLP +GY P+ WP+S+ KI Y+NV HP LA +K H NWV TGE ++FP T F
Sbjct: 263 LVPLPHDGYDPPVSWPESKSKILYKNVAHPKLAAYIKKH-NWVNETGEYLSFPQNQTTFN 321
Query: 446 HGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQI 505
L Y++FIQ+ VP I WGK R+ LD+GC +SF L ++DVLT+S KD+
Sbjct: 322 GNVLQYLEFIQEMVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLA 381
Query: 506 QFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYF 565
Q ALERG P + + ++RL FP VFD +HCA C V WH GGKLLLE+NR+LRP GYF
Sbjct: 382 QVALERGFPTFVSSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLLLEMNRILRPNGYF 441
Query: 566 VWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKR 625
+ S+ K+ +D AM+ LT S+CW ++ K ++ + G IY+KP +N+ YE R
Sbjct: 442 ILSSNN--DKIEDD----EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELR 495
Query: 626 NQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQM 685
+ PP+C++ E+P+AAWYVP++ C++ +P + G++WPE WP RL+ P WL S +
Sbjct: 496 RKKNPPLCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSKEK 555
Query: 686 GIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVW 745
+ D HW +V+ SY++GLGI+W ++RNVMDM A+YGGF A+L VW
Sbjct: 556 AM----------EDTNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVW 605
Query: 746 VMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKL-VP 804
VMNVV V+SPDTLP IYERGL GIYHDWCE F TYPRSYDLLHADHLFS+LKNRCK
Sbjct: 606 VMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPAS 665
Query: 805 VMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGNWQP 863
++ E+DR+ RPGG ++VRD+ + +E L+SLHWEI +++D+EG+L AQK W+P
Sbjct: 666 IVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
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| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 256/537 (47%), Positives = 354/537 (65%)
Query: 312 STQASQSQNEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTA 371
S + +Q E E D+ + + + +C+E ++IPCLDN +AI++L +TA
Sbjct: 119 SAETLGNQTEFES-SDDDDIKSTTARVSVRKFEICSENM-TEYIPCLDNVEAIKRLNSTA 176
Query: 372 HYEHRERHCPEEGPV--CLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVR 429
E ER+CP +G C VP+P+GY+ PIPWP+SRD++W+ NVPH L E KG QNW+
Sbjct: 177 RGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIY 236
Query: 430 VTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERD 489
+ FPGGGTQFIHGA Y+D I Q +P I++G +TRV LD+GCGVASFG YL R+
Sbjct: 237 KENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMSRN 296
Query: 490 VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGG 549
VLTMS APKD H+ QIQFALERG+PA+ A T+RL +P FDLVHC+RCR+ W D G
Sbjct: 297 VLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDG 356
Query: 550 KLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAG 609
LLLE+NR+LR GGYFVW+A PVY+ E W M NLT +CW LV K + G
Sbjct: 357 ILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLV--KKE-----G 409
Query: 610 F-AIYRKPTTNECYEKRNQ-MTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPE 667
+ AI++KP N CY R ++PP+C +E+DP+ WYV L+AC+ R+ + + P
Sbjct: 410 YIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIE-ENGYGANLAP- 467
Query: 668 AWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNV--RNV 725
WP RL PP L + Q+ Y + F + K+W+ ++S +Y++ L +W + RNV
Sbjct: 468 -WPARLLTPPDRLQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNAL--HWKQIGLRNV 522
Query: 726 MDMRAVYGGFAAALKDLQV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRS 783
+DMRA +GGFAAAL +L+V WV+NV+ V+ P+TLP+IY+RGL G+ HDWCE F TYPR+
Sbjct: 523 LDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRT 582
Query: 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW 840
YDLLHA LFS + RC + +M E+DRI+RPGG++ +RD + +E++ ++ W
Sbjct: 583 YDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRW 639
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
Identities = 253/527 (48%), Positives = 344/527 (65%)
Query: 320 NEKERRKDESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERH 379
N+ E + +S+GD + + +C E+ ++IPCLDNT I++L++T E ERH
Sbjct: 155 NQTEIVEAKSDGDS-KARVRIKKFGMCPESMR-EYIPCLDNTDVIKKLKSTERGERFERH 212
Query: 380 CPEEGPV--CLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITF 437
CPE+G CLVP P+GY+ PIPWPKSRD++W+ NVPH L E KG QNW+ F
Sbjct: 213 CPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKF 272
Query: 438 PGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAP 497
PGGGTQFIHGA Y+D + + V I +GK+ RV++DVGCGVASFG YL RDV+TMS AP
Sbjct: 273 PGGGTQFIHGADQYLDQMSKMVSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAP 332
Query: 498 KDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNR 557
KD H+ QIQFALERG+PA++A T+RL +P FDL+HC+RCR+ W D G LLLE+NR
Sbjct: 333 KDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINR 392
Query: 558 VLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGF-AIYRKP 616
+LR GGYF W+A PVY+ E W M NLT+S+CW+LV K + G+ AI++KP
Sbjct: 393 MLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLV--KKE-----GYVAIWQKP 445
Query: 617 TTNECYEKRNQMT-PPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQR 675
N+CY R T PP+C +DP+ WY L+ C+ R+P +K G+ P WP RL
Sbjct: 446 FNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP-EKGYGGNV-P-LWPARLHT 502
Query: 676 PPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGF 735
PP L + + Y + F + K+W ++ Y+ L +RNV+DMRA +GGF
Sbjct: 503 PPDRLQTIKFDSY-IARKELFKAESKYWNEIIG-GYVRALKWKKMKLRNVLDMRAGFGGF 560
Query: 736 AAALKD--LQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLF 793
AAAL D L WV++VV V+ P+TLP+IY+RGL G+ HDWCE F TYPR+YD LHA LF
Sbjct: 561 AAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLF 620
Query: 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW 840
S + RC++ ++ E+DRI+RPGG+ +RD + E++ K++ W
Sbjct: 621 SIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
Identities = 252/518 (48%), Positives = 337/518 (65%)
Query: 327 DESEGDEGNGNIDGYTWRLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPV 386
+E E E I+ +LC++T D+IPCLDN + I++L T E+ ERHCP++
Sbjct: 129 EEKESPEVGFQIEKL--KLCDKTK-IDYIPCLDNEEEIKRLNNTDRGENYERHCPKQSLD 185
Query: 387 CLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIH 446
CL+P P+GYK PI WP+SRDKIW+ NVPH L E KG QNW+R + FPGGGTQFIH
Sbjct: 186 CLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIH 245
Query: 447 GALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQ 506
GA Y+D I Q +P I +G TRV+LD+GCGVASFG +L +R+ T+S APKD H+ QIQ
Sbjct: 246 GADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQ 305
Query: 507 FALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
FALERG+PA+ AV T+RL +P F+++HC+RCR+ W D G LLLE+NR+LR GGYFV
Sbjct: 306 FALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFV 365
Query: 567 WSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGF-AIYRKPTTNECYEKR 625
W+A PVY+ E W M +LT +CWEL IK + G+ A++RKP N CY R
Sbjct: 366 WAAQPVYKHEDNLQEQWKEMLDLTNRICWEL--IKKE-----GYIAVWRKPLNNSCYVSR 418
Query: 626 NQMT-PPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQ 684
T PP+C+ ++DP+ WYV ++ C+ R+P D G+ WP RL PP L S Q
Sbjct: 419 EAGTKPPLCRPDDDPDDVWYVDMKPCITRLP-DNGY-GAN-VSTWPARLHDPPERLQSIQ 475
Query: 685 MGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQV 744
M Y + + + W VV SY+ +RNV+DMRA +GGFAAAL DL +
Sbjct: 476 MDAY-ISRKEIMKAESRFWLEVVE-SYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGL 533
Query: 745 --WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKL 802
WVMN+V V+ +TLP+IY+RGL G HDWCE F TYPR+YDL+HA LFS K RC +
Sbjct: 534 DCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKRCNI 593
Query: 803 VPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW 840
+M E+DR++RPGG + +RD S + +++ K++ W
Sbjct: 594 TNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 248/534 (46%), Positives = 325/534 (60%)
Query: 327 DESEGDEGNGNI---DGYTWR---LCNETTGPDFIPCLDNTKAIQQLRTTAHY---EHRE 377
D+++ D+ + + DG+T R +C++ + IPCLD I Q+R EH E
Sbjct: 54 DDTKQDDTSSSFGVDDGFTPRSFPVCDDRHS-ELIPCLDRN-LIYQMRLKLDLSLMEHYE 111
Query: 378 RHCP--EEGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEII 435
RHCP E CL+P P GYKVPI WPKSRD++W N+PH LA K QNW+ V G+ I
Sbjct: 112 RHCPPPERRFNCLIPPPNGYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKI 171
Query: 436 TFPGGGTQFIHGALHYIDFIQQAV--PK--IAWGKYTRVSLDVGCGVASFGGYLFERDVL 491
FPGGGT F +GA YI + + P + G R DVGCGVASFGGYL D+L
Sbjct: 172 NFPGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDIL 231
Query: 492 TMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKL 551
TMS AP D H QIQFALERGIPA V+GTKRL +P F+L HC+RCR+ W G L
Sbjct: 232 TMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGIL 291
Query: 552 LLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFA 611
LLEL+RVLRPGGYF +S+ Y + ED+ IW MS L MCW++ K N
Sbjct: 292 LLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAA----KRNQT--V 345
Query: 612 IYRKPTTNECYEKRNQMT-PPMCQNEEDPNAAWYVPLQACVHRVPV-DKAERGSQWPEAW 669
I++KP TN+CY +R T PP+C+++ DP+A W V ++AC+ D +GS W
Sbjct: 346 IWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAP-W 404
Query: 670 PHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSY-MSGLGINWSNVRNVMDM 728
P RL PP ++ +G F +D + WR V T + + I VRN+MDM
Sbjct: 405 PARLTSPP-----PRLADFGYSTGM-FEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDM 458
Query: 729 RAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLH 788
+A G FAAALK+ VWVMNVV + P+TL +IY+RGL G H WCE+FSTYPR+YDLLH
Sbjct: 459 KASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLH 518
Query: 789 ADHLFSQLKNR-CKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWE 841
A + S +K + C V ++ E+DRI+RP G +I+RD+ V V+ +LK+LHWE
Sbjct: 519 AWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWE 572
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9SD39 | PMTR_ARATH | 2, ., 1, ., 1, ., - | 0.5587 | 0.9781 | 0.9508 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_VII000456 | hypothetical protein (847 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 870 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-04 | |
| PRK08581 | 619 | PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami | 7e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 8e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 8e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.001 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 0.003 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.003 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 0.003 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 857 bits (2216), Expect = 0.0
Identities = 288/515 (55%), Positives = 354/515 (68%), Gaps = 18/515 (3%)
Query: 353 DFIPCLDNTKAIQQLRTTAHYEHRERHCP--EEGPVCLVPLPEGYKVPIPWPKSRDKIWY 410
D+IPCLDN +AI+ L + EHRERHCP EE CLVP P+GYK PIPWPKSRDK+WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 411 RNVPHPMLAEVKGHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRV 470
NVPH LAE KG QNWV+V G+ FPGGGTQF HGA YIDF+ Q +P IAWG R
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 471 SLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN 530
+LDVGCGVASFG YL RDVLTMSFAPKD H+AQ+QFALERG+PA+ V+GT+RL +P
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKL-GEDVEIWNAMSNL 589
FD+ HC+RC +PWH + G LLLE++RVLRPGGYFV S PVY + + E W AM L
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEAL 240
Query: 590 TVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQMT-PPMCQNEEDPNAAWYVPLQ 648
S+CW+LV K D AI++KP N CY KR PP+C++ +DP+AAWYVP++
Sbjct: 241 AKSLCWKLVAKKGD------IAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPME 294
Query: 649 ACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVS 708
AC+ +P E G W E WP RL P L S Q G + + F D + W+ VS
Sbjct: 295 ACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQ---IGGVSAEAFKADTELWKRRVS 351
Query: 709 TSY-MSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLF 767
+ L I+ VRNVMDM A +GGFAAAL D VWVMNVV V+SPDTLP+IY+RGL
Sbjct: 352 KYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLI 411
Query: 768 GIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA 827
GIYHDWCE FSTYPR+YDLLHADHLFS K RC L ++ E+DRI+RPGG +I+RD+
Sbjct: 412 GIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDV 471
Query: 828 VTEVENFLKSLHWEILFAFSKD----QEGVLSAQK 858
+ +V+ K++ WE+ ++D E +L AQK
Sbjct: 472 LDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-09
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 472 LDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQF 527
LDVGCG L R V + +P+ + A +R V+G + L F
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPE-----MLALARKR--APRKFVVGDAEDLPF 53
Query: 528 PRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
P FD+V V H+ D + L E+ RVL+PGG V
Sbjct: 54 PDESFDVVVS--SLVLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQ----------IQFALER----GIPAIS 517
LD+GCG GYL T A K A+ I+ A E G +
Sbjct: 8 LDLGCG----TGYL------TFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVE 57
Query: 518 AVMGT----KRLQFPRNVFDLV--HCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
+ G +LQ N FD+V + +P D K+L E+ RVL+PGG +
Sbjct: 58 FIQGDIEELPQLQLEDNSFDVVISNEVLNHLP---DPDKVLEEIIRVLKPGGVLI 109
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 29/229 (12%), Positives = 74/229 (32%), Gaps = 20/229 (8%)
Query: 103 TNDKGSGGSDKQDEGNASSAGDDDSKMSDEQKVKKIIEEQK--KQNEVDTQMSEDKTLIE 160
+ K + K+ + +S ++ K + +D+ S+ +I+
Sbjct: 34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIID 93
Query: 161 NQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHVQ 220
N + + + ++ + T + N SD I +++
Sbjct: 94 FIY-----KNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSD------ISDYEQP--- 139
Query: 221 QKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENVTQETEQENTEETDGKRAKEHK-- 278
+ E + + ++ + Q S K++N + T K+ K
Sbjct: 140 RNSEKSTNDSNKNSDSSIKND--TDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPT 197
Query: 279 LTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKD 327
N ++ + + + + S +S+ S S++ K+ +KD
Sbjct: 198 QPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKD 246
|
Length = 619 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 56/286 (19%), Positives = 107/286 (37%), Gaps = 29/286 (10%)
Query: 62 DEPETLKATEKNEHTVFEDNPGVLPIDAIQTGDPNQTHYTITNDKGSGGSDKQDEGNA-- 119
D PE LK EK + + +D ++ D N+ D+ D +E N
Sbjct: 3988 DLPEDLKLDEKEGDV--SKDSDLEDMD-MEAADENKEEADAEKDEPMQDEDPLEENNTLD 4044
Query: 120 -SSAGDDDSKMS--DEQKVKKIIEEQKKQNEVDTQ----MSEDKTLIENQQFFVFDNNAK 172
DD S ++ DE+ + EE ++NE T+ E+ E + DN+ K
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPK 4104
Query: 173 SSTEEMIKQQQLRENAGNQTLNANDPENHISDEDKRRSIEKHQEQHVQQKEETPFHSFSD 232
+ + E ++ + + E D + + + VQ+ TP + S+
Sbjct: 4105 MDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSE 4164
Query: 233 QIVPYLQPPPQQEVQVSDSPKS-ENVTQETEQENTEETDGKRAKEHKLTNSNSGVSETWN 291
Y + D + + + E E+ E+ + + + + V E
Sbjct: 4165 ADRQY--------QSLGDHLREWQQANRIHEWEDLTESQSQAFDDSEFMH----VKEDEE 4212
Query: 292 PDGRNTGSSPKESLES--RKSWSTQASQSQNEKERRKDESE--GDE 333
D + G++ K+ ++S R + Q S N +DE++ GD+
Sbjct: 4213 EDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEVGDK 4258
|
Length = 4600 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRN 530
LD+GCG L +R F D + A + + + G ++L +
Sbjct: 39 LDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLEDS 97
Query: 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN-- 588
FDL+ + W D + L EL RVL+PGG +S T L E + +
Sbjct: 98 SFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSFGQHGLRY 155
Query: 589 LTVS-------MCWELVTIKMDK 604
L++ +EL+T++ +
Sbjct: 156 LSLDELKALLKNSFELLTLEEEL 178
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (94), Expect = 0.001
Identities = 28/103 (27%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR------- 524
LD+GCG L D + A R A ++
Sbjct: 53 LDIGCGTG-RLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV 111
Query: 525 LQFP-RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
L F FDLV V + K L EL RVL+PGG V
Sbjct: 112 LPFEDSASFDLVISLL--VLHLLPPAKALRELLRVLKPGGRLV 152
|
Length = 257 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 50/278 (17%)
Query: 102 ITNDKGSGGSDKQDEGNASSAGDDDSKMSDEQKVKKIIEEQKKQNEVDTQ--------MS 153
+ + Q + + S A + +S M+ K + E + +E + Q +
Sbjct: 3837 LEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIP 3896
Query: 154 EDKTLIENQQFFVFDNNAKSSTEEMIKQQQLRENAGNQTLNANDPENHISDEDKR-RSIE 212
ED + N++ + N E +Q N + ++ D + D+D++ + E
Sbjct: 3897 EDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDE 3956
Query: 213 KHQEQHVQQKEETPFHSFSDQIVPYL-QPPPQQEV--------------QVSDSPKSENV 257
+ V +E I QPPP+ E VS E++
Sbjct: 3957 EEMSDDVGIDDEI-----QPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDM 4011
Query: 258 TQETEQENTEETDGKRAKEHKLTNSNSGVSET--------------WNPDGRNTGSSPKE 303
E EN EE D + K+ + + + D + +E
Sbjct: 4012 DMEAADENKEEADAE--KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069
Query: 304 SLESRKSWSTQASQSQNEKERRKDESEGDEGNGNIDGY 341
+++ + + +S E E + E D+ ID +
Sbjct: 4070 NVQENEESTEDGVKSDEELE--QGEVPEDQA---IDNH 4102
|
Length = 4600 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALER----GIPAISAVMGTKRLQF 527
LD+GCG L +++ + ++ A ER G V + L F
Sbjct: 2 LDLGCGTGRVLRALARAGPSSVTGVDISKEA--LELAKERLRDKGPKVRFVVADARDLPF 59
Query: 528 PRNVFDLVHCARCRVP--WHIDGGKLLLELNRVLRPGG 563
FDLV CA + LL E R+LRPGG
Sbjct: 60 EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALER---GIPAISAVMG-TKRLQF 527
LDVGCG + L R D +A + A ER P + V G L F
Sbjct: 24 LDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83
Query: 528 PRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
P FD V + RV H+ D + L E+ RVLRPGG V
Sbjct: 84 PDGSFDAV-RS-DRVLQHLEDPARALAEIARVLRPGGRVV 121
|
Length = 241 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 870 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.93 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.84 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.63 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.59 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.54 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.54 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.52 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.5 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.43 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.42 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.41 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.41 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.38 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.36 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.36 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.32 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.31 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.31 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.31 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.3 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.29 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.29 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.28 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.28 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.25 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.25 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.24 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.2 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.19 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.18 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.18 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.18 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.17 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.16 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.14 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.14 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.13 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.11 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.11 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.1 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.1 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.08 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.08 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.08 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.08 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.05 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.04 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.04 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.01 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.0 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.99 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.99 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.99 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.99 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.99 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.99 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.98 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.97 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.97 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.96 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.96 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.96 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.95 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.95 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.95 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.95 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.93 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.93 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.93 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.92 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.92 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.91 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.89 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.88 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.86 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.85 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.85 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.84 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.84 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.83 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.8 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.79 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.78 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.77 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.77 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.76 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.76 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.75 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.74 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.73 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.72 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.68 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.67 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.65 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.63 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.63 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.63 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.63 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.62 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.59 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.57 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.56 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.54 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.54 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.49 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.48 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.46 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.43 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.42 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.41 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.39 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.39 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.38 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.36 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.35 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.33 | |
| PLN02366 | 308 | spermidine synthase | 98.33 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.33 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.32 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.31 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.28 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.28 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.28 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.27 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.27 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.26 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.25 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.24 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.24 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.23 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.23 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.22 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.19 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.19 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.17 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.16 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.16 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.14 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.14 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.12 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.11 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.11 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.11 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.09 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.07 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.07 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.06 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.06 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.06 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.05 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.04 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.04 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.03 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.0 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.0 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.99 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.95 | |
| PLN02476 | 278 | O-methyltransferase | 97.92 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.91 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.89 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.89 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.87 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.86 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.85 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.84 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.84 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.83 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 97.83 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.82 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.81 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.81 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.8 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.8 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 97.8 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.78 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.76 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.76 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.74 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.73 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.72 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.71 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.7 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.69 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.68 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.68 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.67 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.67 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.65 | |
| PLN02823 | 336 | spermine synthase | 97.65 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.64 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.61 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.61 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.59 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.58 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.57 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.56 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.56 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.56 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.53 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.53 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.51 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.5 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.5 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.5 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.49 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.49 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.48 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.45 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.45 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.44 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.43 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.42 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.4 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.39 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.39 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.36 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.34 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.33 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.31 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.31 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.3 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.3 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.29 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.26 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.25 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.23 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.22 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.22 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.22 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.21 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.19 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.15 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.14 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.12 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.12 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.11 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.09 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.09 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.09 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.07 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.07 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.07 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.07 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.06 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.02 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.02 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.96 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.96 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.96 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.95 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.95 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.92 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 96.91 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 96.91 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.89 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 96.89 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.89 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.88 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.88 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.88 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 96.86 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.85 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.83 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.8 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.77 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 96.75 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.74 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.72 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 96.69 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.67 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.66 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.65 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.64 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 96.57 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.56 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.56 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.52 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 96.52 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.52 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 96.51 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.49 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 96.48 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.45 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 96.45 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 96.43 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.31 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.27 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.24 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.19 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.18 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.09 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.08 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.07 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.07 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.0 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.92 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.91 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.86 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 95.85 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.78 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 95.72 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 95.72 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.65 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.57 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 95.51 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.5 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 95.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 95.41 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 95.41 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.38 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.37 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 95.37 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.33 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 95.32 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.26 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 95.19 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.98 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 94.91 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 94.9 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.86 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 94.84 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.82 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.8 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 94.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 94.65 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.59 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 94.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.46 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 94.43 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 94.3 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.29 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 94.23 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 94.22 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 94.19 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.17 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.16 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.86 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.84 | |
| PLN02366 | 308 | spermidine synthase | 93.63 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 93.63 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 93.59 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.52 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.51 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.34 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 93.32 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.26 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 93.12 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.88 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.77 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 92.66 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.38 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.22 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 92.02 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 91.92 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.53 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.24 | |
| PLN02476 | 278 | O-methyltransferase | 91.14 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 90.94 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 90.93 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 90.66 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 90.51 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 90.36 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 90.35 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.23 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 90.09 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 89.78 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 89.71 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 89.1 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 88.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.45 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 88.15 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.8 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 87.57 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.23 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 87.08 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 87.0 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 86.92 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 86.92 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 86.56 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 85.76 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 85.64 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 85.62 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 85.56 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 85.56 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 85.48 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 85.26 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 85.17 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 85.06 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 84.98 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 84.91 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 84.61 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 84.56 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 84.54 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 84.42 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 84.01 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 83.95 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.88 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 82.9 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 82.48 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 82.33 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 82.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 81.97 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 81.52 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 81.25 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 80.84 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 80.27 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 80.23 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 80.09 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-141 Score=1179.80 Aligned_cols=497 Identities=57% Similarity=1.078 Sum_probs=472.0
Q ss_pred CCcCCCCHHHHHHhhhhhcccccccCCCCC--CCCCcCCCCCCCCCCCCCCCCCcccccccCCCCchhhhhhhcchhhhh
Q 002884 353 DFIPCLDNTKAIQQLRTTAHYEHRERHCPE--EGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRV 430 (870)
Q Consensus 353 ~y~pC~D~~~~~~~~~~~~~~~~~eRhCp~--~~~~ClVp~P~~Y~~P~~WP~SrD~iW~~Nvp~~~La~~k~~qnWv~~ 430 (870)
|||||+|+.++++++..+.++||||||||. ++++||||+|++|+.||+||+|||++||+|+||+.|+++|++|+|+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999998888999999999996 799999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHH
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALE 510 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~e 510 (870)
.|+.|.|||||++|.+|+.+|+++|.++++.+..+...+++||+|||+|+|+++|++++|++|.+++.+.+.+++++|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999986667778999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCc-CchhHHHHHHHhhccc
Q 002884 511 RGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVY-QKLGEDVEIWNAMSNL 589 (870)
Q Consensus 511 rgl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~-~tL~El~~~w~~~~~l 589 (870)
||+++++.+.+..+||||+++||+|||+.|+++|+.+.+.+|.|++|+|||||+|+++++|++ .+..++...|..+.++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999989999999999999999999999999 5667888999999999
Q ss_pred ccccchhHHHHHHHHHhhccceEEEecCchhHHhhhcC-CCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCC
Q 002884 590 TVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQ-MTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEA 668 (870)
Q Consensus 590 a~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy~~r~~-~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~ 668 (870)
+..|||+++++..+ ++||+|+.+++||.+|+. ..||+|+.+++++.+||.+|++||++++......++.|+++
T Consensus 241 ~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 241 AKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999975554 899999999999999986 78999998899999999999999999999766677888999
Q ss_pred CcccccCCCCCccccccccCCCCchhhHHHHHHhhcccccceee-eccccccccccccccccccchhHHhhhcCCCeEEE
Q 002884 669 WPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYM-SGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVM 747 (870)
Q Consensus 669 wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~W~~~V~~TY~-~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~vwvm 747 (870)
||+||+++|+|+.... +.+.+.+.|.+|+++|+.+|..+|. ..+.++|++||||||||||||||||||++++||||
T Consensus 315 WP~RL~~~P~rl~~~~---~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVM 391 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGS---IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVM 391 (506)
T ss_pred ChhhhccCchhhhcCC---cCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEE
Confidence 9999999999997643 4567899999999999999998552 33469999999999999999999999999999999
Q ss_pred EeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh
Q 002884 748 NVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA 827 (870)
Q Consensus 748 Nvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~ 827 (870)
||||+.++|||++||||||||+||||||+|+|||||||||||+||||.+++||++++||+||||||||||++||||..++
T Consensus 392 NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 392 NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEEeecCC----CceEEEEEe
Q 002884 828 VTEVENFLKSLHWEILFAFSKD----QEGVLSAQK 858 (870)
Q Consensus 828 ~~~~~~~~~~l~W~~~~~~~~~----~e~iL~~~K 858 (870)
+.+|+.|+++|||++++.++++ +|+||||+|
T Consensus 472 l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999998876 799999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=261.60 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=117.2
Q ss_pred cccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-Cccchhhhhcccccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
-+.||.+||+|||+|+|||+|++++|.+|+++|.+.+ ++.++++|||+++++........+|| ++|||+||.+....+
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccc
Confidence 3789999999999999999999999999999999988 89999999999999999877778887 999999994444433
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC----------hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEeCC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE----------PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGN 860 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~----------~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~~ 860 (870)
...- ..+|+|||||||||||||++.+ ...+.+|+.++++|||+.... +..+.|+||+.
T Consensus 195 ~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~ 262 (506)
T PF03141_consen 195 HPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT 262 (506)
T ss_pred hhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence 3221 2799999999999999999965 356899999999999999874 33499999975
|
; GO: 0008168 methyltransferase activity |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=197.59 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=149.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+..+|||||||+|.++..|... .|+++|+++.|+..+.. +.....+...+.+.+|+++++||+|+|+. .++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPLATATFDLAWSNL-AVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhh
Confidence 4679999999999999888764 89999999998876653 22222344556688899999999999985 5899
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhHHhh
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEK 624 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy~~ 624 (870)
..++..+|.++.|+|||||+|+++ .++..+++++...|..+....+...+.........+.++|+.+
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------------ 182 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFT-TLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH------------ 182 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEE-eCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee------------
Confidence 999999999999999999999998 7788899999999977654333222222323333444333321
Q ss_pred hcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHHHhhc
Q 002884 625 RNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWR 704 (870)
Q Consensus 625 r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~W~ 704 (870)
+.+..+.+|.+..++|++|+.+ |++.. ...+..+++++.....|.+.|..=.
T Consensus 183 -----------~~~~~~~~f~~~~~~l~~lk~~----G~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251)
T PRK10258 183 -----------HIQPITLWFDDALSAMRSLKGI----GATHL-------------HEGRDPRILTRSQLQRLQLAWPQQQ 234 (251)
T ss_pred -----------eeeEEEEECCCHHHHHHHHHHh----CCCCC-------------CCCCCCCCCcHHHHHHHHHhccccC
Confidence 2344677999999999999998 66521 1112234556666677777765433
Q ss_pred ccccceeeecccccc
Q 002884 705 YVVSTSYMSGLGINW 719 (870)
Q Consensus 705 ~~V~~TY~~~Lgi~W 719 (870)
+++++||+++|++.+
T Consensus 235 g~~~lty~v~~~~~~ 249 (251)
T PRK10258 235 GRYPLTYHLFLGVIE 249 (251)
T ss_pred CCcceEEEEEEEEEE
Confidence 479999999997654
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-20 Score=191.76 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=170.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
+....++|||||.|.+.+.|... .++-+|.|..|+..++ -+...++....++.+.+.|+|.+++||+|+++. .+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-sl 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SL 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhh-hh
Confidence 45678999999999999999886 7899999999887654 344455666677888899999999999999986 49
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH--hhcccccccchhHHHHHHHHHhhccceEEEecCchh
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN--AMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNE 620 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~--~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~s 620 (870)
||.++++..+..+...|||+|.|+.+ .++.+++.|++-... +++.... +.+. + .+|..++++|-.+-++||+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GG-iSph-i-SPf~qvrDiG~LL~rAGF~-- 221 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGG-ISPH-I-SPFTQVRDIGNLLTRAGFS-- 221 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccC-CCCC-c-ChhhhhhhhhhHHhhcCcc--
Confidence 99999999999999999999999998 899999999998753 3333222 3332 3 4788899999999999998
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHH
Q 002884 621 CYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDY 700 (870)
Q Consensus 621 Cy~~r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dy 700 (870)
.+ +.|.|...+-|+.|+.+|.+|++|++.+.+- ..++ ++.|.+..+..+.|
T Consensus 222 --------m~---tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~----------~Rn~--------~l~Ret~vAaaAiY 272 (325)
T KOG2940|consen 222 --------ML---TVDTDEIVVGYPRMFELMEDLQGMGESNAAL----------NRNA--------ILNRETMVAAAAIY 272 (325)
T ss_pred --------cc---eecccceeecCchHHHHHHHHHhhcccchhh----------ccCc--------cccHHHHHHHHHHH
Confidence 22 2588889999999999999999995544221 1121 22344555555555
Q ss_pred Hh----hcccccceeeeccccccccc
Q 002884 701 KH----WRYVVSTSYMSGLGINWSNV 722 (870)
Q Consensus 701 e~----W~~~V~~TY~~~Lgi~W~~~ 722 (870)
+. -.+.+|+||+++|.++|+.-
T Consensus 273 ~smya~e~~~iPATfqiiy~iGWk~~ 298 (325)
T KOG2940|consen 273 QSMYATEDGTIPATFQIIYMIGWKPH 298 (325)
T ss_pred HHHhcCCCCCcceeEEEEEEEccCcC
Confidence 43 33379999999999999754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=206.50 Aligned_cols=100 Identities=17% Similarity=0.329 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCc--ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGT--KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~da--e~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..+.. .....+.+.++ .+. ..+|+++++||+|+|+.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~- 112 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL- 112 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCCCCCEEEEehhhh-
Confidence 4679999999999999999875 89999999999876542 11222333333 343 357888999999999865
Q ss_pred cccccC--hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHID--GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++|..+ ...+|.+++|+|||||+|++...
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 565554 37899999999999999999753
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=159.83 Aligned_cols=101 Identities=27% Similarity=0.347 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||||.++..+++. .|+++|+|+.|+..|+. .+.+.+...+ +.+.+++.|||+|++||+|.++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~-k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE-KLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH-HhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 6899999999999999999874 89999999999999884 4444443334 445568999999999999999975
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..|...+|+|++|||||||.+++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 8888999999999999999999998873
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-15 Score=157.44 Aligned_cols=102 Identities=29% Similarity=0.433 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||||.++..|+++ .|+++|+|+.|+..|+.+.. ..+...+.+ ..+++.|||++++||+|+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~-~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK-REGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH-HTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH-hhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 46789999999999999988763 79999999999999885444 444434444 445799999999999999986
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ ++...|...+|+|++|+|||||.|++..
T Consensus 125 g-lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 G-LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp --GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 4 7777889999999999999999999874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=130.74 Aligned_cols=92 Identities=30% Similarity=0.483 Sum_probs=71.8
Q ss_pred EEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccccCh
Q 002884 472 LDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG 548 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~ 548 (870)
||||||+|.++..|+++ .|+++|+++.++..++... ...+ ..+...+...+||++++||+|++..+ ++|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~--~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEG--VSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTST--EEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccC--chheeehHHhCccccccccccccccc-eeeccCH
Confidence 89999999999999875 8999999999877665322 2222 23556667999999999999999864 7777888
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 002884 549 GKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 549 ~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..+|.++.|+|||||+|+|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=144.74 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=127.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||||||+|.++..|+.. .++++|+++.++..+..... ....+...+...+|+++++||+|+++.+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-L 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-h
Confidence 3478999999999998888764 68999999998766553221 1223445556788888899999999864 8
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhHH
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECY 622 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy 622 (870)
||..++..+|.++.++|+|||.|+++ .+....+.+....+... ..++.........+... |....
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-f~~~~-------- 173 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSFGQH-----GLRYLSLDELKALLKNS-FELLT-------- 173 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEE-eCCccCHHHHHHHHHHh-----ccCCCCHHHHHHHHHHh-cCCcE--------
Confidence 88888999999999999999999998 56666666655555321 01111121222223322 22111
Q ss_pred hhhcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHHHh
Q 002884 623 EKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKH 702 (870)
Q Consensus 623 ~~r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~ 702 (870)
........+|.+...++..|+.+ |+... + . .. .++.....|.+.|..
T Consensus 174 ------------~~~~~~~~~~~~~~~~~~~l~~~----g~~~~----------~--~--~~---~~~~~~~~~~~~~~~ 220 (240)
T TIGR02072 174 ------------LEEELITLSFDDPLDVLRHLKKT----GANGL----------S--S--GR---TSRKQLKAFLERYEQ 220 (240)
T ss_pred ------------EEEEEEEEeCCCHHHHHHHHHHh----ccCcC----------C--C--CC---CCHHHHHHHHHHHHH
Confidence 12223455788888899998887 54421 0 0 00 122233445555432
Q ss_pred hc--ccccceeeeccccccc
Q 002884 703 WR--YVVSTSYMSGLGINWS 720 (870)
Q Consensus 703 W~--~~V~~TY~~~Lgi~W~ 720 (870)
-. +.|+.+|.++++++|+
T Consensus 221 ~~~~~gi~~~~~~~~~~~~k 240 (240)
T TIGR02072 221 EFQPDGLPLTYHVVYGIAKK 240 (240)
T ss_pred hhcCCCceeEEEEEEEEEEC
Confidence 21 2477899998888763
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=151.25 Aligned_cols=102 Identities=27% Similarity=0.434 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.|+..+.. .+...++. ..+.+.+...+||++++||+|+|..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45789999999999999988863 89999999999988774 44445542 33445566889999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..+...+|.+++|+|||||.|++.+
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 6666788999999999999999999974
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=146.03 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHH--HcCCCcE-EEEcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFAL--ERGIPAI-SAVMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~--ergl~~~-~~v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|++. .|+|+|+|+.|+..|..+... ..+.+.+ +...+...+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45789999999999998887652 799999999999888644321 2223333 344556889999999999999
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.+ +|+..++..+|.|++|+|||||+|++.+.
T Consensus 152 ~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 865 78788999999999999999999998853
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=137.80 Aligned_cols=150 Identities=27% Similarity=0.419 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp 528 (870)
+.+.+..+.+. ..+..+|||||||+|.++..|... +++|+|+++.++.. . ............+++
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhcc
Confidence 34445444432 246789999999999999999876 99999999987654 1 122223323355567
Q ss_pred CCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhc
Q 002884 529 RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSA 608 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~da 608 (870)
+++||+|+|+. +++|..++..+|.++.++|||||+|+++.+............|..........++.........++++
T Consensus 76 ~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 76 DGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp SSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred ccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 88999999985 58888899999999999999999999996544333333333332211110222333344667778999
Q ss_pred cceEEE
Q 002884 609 GFAIYR 614 (870)
Q Consensus 609 GfaI~r 614 (870)
||.+..
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 998864
|
... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=145.70 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=108.8
Q ss_pred hcchhhhhcCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhh
Q 002884 423 GHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKD 499 (870)
Q Consensus 423 ~~qnWv~~~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~m 499 (870)
+...|-.+.|..+.-||| ... ...+...+. ..++.+|||||||+|..+..|+.. .|+++|+++.|
T Consensus 20 ~~~~~e~~~g~~~~~~gg-------~~~-~~~~l~~l~----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGG-------IEA-TTKILSDIE----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred cchhHHHHhCCCCCCCCc-------hHH-HHHHHHhCC----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 446677777755554554 111 222222221 245789999999999988888653 89999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEEECCCcC--ch
Q 002884 500 EHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWSATPVYQ--KL 576 (870)
Q Consensus 500 l~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL 576 (870)
+..|...... .....+...+...+|+++++||+|++..+.+|+. .+...+|++++|+|||||+|+++...... ..
T Consensus 88 ~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~ 165 (263)
T PTZ00098 88 VNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW 165 (263)
T ss_pred HHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc
Confidence 8877643322 1122333445577899999999999976545554 26789999999999999999998542211 11
Q ss_pred hH-HHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 577 GE-DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 577 ~E-l~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.+ ....+.. ....+ + ........++++||.+..
T Consensus 166 ~~~~~~~~~~---~~~~~-~-~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 166 DEEFKAYIKK---RKYTL-I-PIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred HHHHHHHHHh---cCCCC-C-CHHHHHHHHHHCCCCeee
Confidence 11 1111111 00001 1 123456678888888766
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=131.98 Aligned_cols=102 Identities=26% Similarity=0.346 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.++..++... ...+.+.+.++ .+...+|+++++||+|+++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 45789999999999998888642 7999999999998877543 33444444444 45677888889999999985
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+...+|.++.|+|+|||+|++..
T Consensus 123 -~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 123 -GLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 47888888999999999999999999874
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=147.88 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-----CChhHHHhhCccceeccccccc----cCCC-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESF----STYP-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f----~tyP-rtyDllHa~~ 791 (870)
-..+||+|||.|+|.++|+...=- .|++-++-. ..+..+.++||-.+. -+|..+ .-|| .+.|-||.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i-- 423 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI-- 423 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--
Confidence 466999999999999999866210 144444332 445566777864332 233322 3345 78888877
Q ss_pred cccc-c------cCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC-CceE
Q 002884 792 LFSQ-L------KNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 792 lfS~-~------~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l-~W~~ 842 (870)
.|.. | +.|=--...|.++-|+|+|||.+.++ |..++...+...+..- +|+.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 5652 1 22322347899999999999988776 6666666655555443 3554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=136.56 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|..+..++. ..|+++|+++.|+..|+. .....+++.+.++ .+...+|+++++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~- 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISN- 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc-
Confidence 3578999999999986655443 269999999999988874 3444555544444 4467889988999999997
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCcCch
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL 576 (870)
+++++..+...+|.+++|+|||||+|++++......+
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~ 190 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL 190 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC
Confidence 5688888889999999999999999999865444433
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=139.82 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcE-EEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAI-SAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~-~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+|||+++.|+..|+.. +...+. ..+ +...+.+.+|+++++||+|+|..+ +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v-L 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV-I 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-H
Confidence 4679999999999999988875 899999999999888743 332222 223 334445788888899999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..++..+|.++.|+|||||.|++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 7788999999999999999999999853
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=140.64 Aligned_cols=143 Identities=21% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+.+|||||||+|.++..|+.. .|+|+|+++.|+..+........ .....+...+.+.+|+ +++||+|+|..+ +
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v-l 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV-L 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-h
Confidence 4689999999999999988764 59999999998865432211111 2223444455688888 788999999754 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH-H--HHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE-D--VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E-l--~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
++..++..+|.+++|+|+|||.|++.+......... + ...+..+.... .-..+......+.++||.+.+
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~---~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY---FIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce---eCCCHHHHHHHHHHcCCceEE
Confidence 667888999999999999999999874322211100 0 11122222110 001233556778899998776
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=117.93 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHHhc--C--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCCCCCCceeEEEecc-c
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--R--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQFPRNVFDLVHCAR-C 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LPfpd~SFDlV~Ss~-~ 540 (870)
++.+|||||||+|.++..|++ . +|+|+|+++.|+..++.+.......+.+.++.++- ..+-....||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999998887 3 89999999999999886654434345555555433 2233345599999986 2
Q ss_pred ccc-cc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVP-WH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alh-w~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ +. .+...+|..+.+.|+|||+|++..
T Consensus 81 -~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 -LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 21 345789999999999999999973
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=133.79 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=85.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----------CEEEEeCChhhHHHHHHHHHHHcCCCc---EEEEc-CcccCCCCCC
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----------DVLTMSFAPKDEHDAQIQFALERGIPA---ISAVM-GTKRLQFPRN 530 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----------~VtgVDiSp~ml~~A~vq~A~ergl~~---~~~v~-dae~LPfpd~ 530 (870)
..++.++||++||||.++..+.+. +|+++|++|.|+..+. +.+.++++.. ..++. +++.|||+++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 346799999999999888777642 7999999999999987 4555565532 44555 6799999999
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+||+..+++. +-.+.++.++|+|++|||||||.|.+-
T Consensus 177 s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 177 SFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred cceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999865 777789999999999999999999975
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=129.73 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGI--PAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|++ .+|+|+|+++.|+..|+.... ..+. ...+...+...++++ .+|+|+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 567999999999998887764 269999999999988875443 3222 233444455677765 48999998
Q ss_pred ccccccccC--hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWHID--GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.+ +||..+ ...+|.+++|+|||||.|+++.+.
T Consensus 130 ~~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FT-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cc-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 64 777643 478999999999999999998543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=135.74 Aligned_cols=95 Identities=23% Similarity=0.422 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.+ .|+|+|+|+.|+..|+ ++++ .+...+...++ ++++||+|+|+. +
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~~--~~~~~d~~~~~-~~~~fD~v~~~~-~ 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERGV--DARTGDVRDWK-PKPDTDVVVSNA-A 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcCC--cEEEcChhhCC-CCCCceEEEEeh-h
Confidence 35789999999999999888754 7999999999887664 3343 33444555554 567899999986 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+||..++..+|.+++|+|||||+|++..
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 8898899999999999999999999973
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-12 Score=123.57 Aligned_cols=102 Identities=23% Similarity=0.353 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC--CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ--FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP--fpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|++ .+++|+|+++.|+..|+ +.+.+.+++++.+.. +...++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467999999999999999883 38999999999999988 456666776555544 456677 66 889999998
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. ++++..+...+|.++.++|++||.+++....
T Consensus 81 ~-~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G-VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S-TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4 4777788889999999999999999998543
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=141.46 Aligned_cols=142 Identities=23% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+|+.++..|... +........+...+...+|+++++||+|+|..+ +
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35779999999999988888763 799999999998877643 222222233445556778888899999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..++..+|.+++|+|||||.|++++...... ..+....+... ...+ .........+.++||.+..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---g~~~--~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR---GYDL--HDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc---CCCC--CCHHHHHHHHHHCCCeeee
Confidence 667889999999999999999999985322211 11211222211 0111 1233456678889998875
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=131.54 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||||.++..|++. .|+|+|+|+.|+..|... . ...+.+.+.+||++++||+|+|+.+ +|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-----~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-----D---DKVVGSFEALPFRDKSFDVVMSSFA-LH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-----c---ceEEechhhCCCCCCCEEEEEecCh-hh
Confidence 3679999999999999888765 899999999998876531 1 2345567889999999999999864 78
Q ss_pred cccChHHHHHHHHhhcCCCc
Q 002884 544 WHIDGGKLLLELNRVLRPGG 563 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG 563 (870)
+..++..+|+|++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 88899999999999999953
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=134.13 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHH-HcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFAL-ERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~-ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++++|||||||+|.++..++.. .|+|+|+|+.|+..+...... .......+...+...+|.. .+||+|+|+.+ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv-L 198 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV-L 198 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch-h
Confidence 5789999999999988877654 599999999988664321111 1111223344556777764 47999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHH---HHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGED---VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El---~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..++..+|.+++|+|||||.|++.+..+....... ...+..+..... .+ ........+..+||...+
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f--lp-S~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF--IP-SVSALKNWLEKVGFENFR 270 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccccc--CC-CHHHHHHHHHHCCCeEEE
Confidence 6667889999999999999999999743322211100 011222211110 11 133456678889998876
|
Known examples to date are restricted to the proteobacteria. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-12 Score=134.80 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
.+.+|||||||.|.++..|++. .|+|+|+++.++..|+ ..|.+.|+...+.....+.|-...++||+|+|..+ +++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-lEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-LEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-HHc
Confidence 5789999999999999999875 9999999999999998 46777777543334445666666689999999986 667
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+++.+.++|||||.+++|+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEec
Confidence 7899999999999999999999994
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=122.12 Aligned_cols=102 Identities=28% Similarity=0.300 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||+|||+|.++..++. ..++++|+++.++..++.. ....+....+...+...+|+++++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 4578999999999998888764 2799999999988776643 111122233344456778888899999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..++..++.++.++|||||+|++..
T Consensus 97 -~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 -LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred -hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7777889999999999999999999874
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=131.31 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccC-CCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRL-QFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~L-Pfpd~SFDlV~Ss~~a 541 (870)
.+.+|||||||+|.++..|+.. .|+++|+++.|+..|+. .+...++. .+.++. +...+ ++++++||+|+|..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v- 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV- 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH-
Confidence 4679999999999999999876 89999999999998874 44445542 334444 44444 466789999999854
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++|..++..+|.++.|+|||||+|++..
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7888889999999999999999999863
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=126.94 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..|+++ .|+|+|+|+.|+..++. .+...++..+ ..+.+...++++ ++||+|+|+.+ +|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-hh
Confidence 4679999999999999999876 89999999999988874 4444555433 334444556664 57999999864 66
Q ss_pred ccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|.. +...++.++.|+|||||++++.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 654 3479999999999999996654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=126.05 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++.+|+++ .|+|+|+++.|+..++. .+...++.....+.+...++++ ++||+|+|+.+ +|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecc-ccc
Confidence 3579999999999999999875 89999999999988774 4455566544444444445554 57999999864 554
Q ss_pred cc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. +...++.+++|+|||||+|++.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 42 3478999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=128.13 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEE-EcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGIP-AISA-VMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~-v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+. .+|+|+|+|+.|+..|+.+... .+.. .+.+ ..+...+|++ .||+|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 3568999999999998877754 2899999999999998865543 3332 2333 3445667765 4899999
Q ss_pred cccccccccCh--HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.+ +|+..+. ..+|.+++|+|||||.|+++..
T Consensus 132 ~~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 132 NFT-LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 864 6665433 6899999999999999999853
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=131.86 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC-------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
...+|||||||+|.++..|+.. .|+|+|+|+.|+..|. ++.....+.+.+...+||++++||+|++.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEec
Confidence 4578999999999998887642 5899999999876654 233334455666788999999999999864
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHH
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~ 582 (870)
+ ...+.++.|+|||||+|++. .+....+.+++..
T Consensus 160 ~--------~~~~~e~~rvLkpgG~li~~-~p~~~~l~el~~~ 193 (272)
T PRK11088 160 A--------PCKAEELARVVKPGGIVITV-TPGPRHLFELKGL 193 (272)
T ss_pred C--------CCCHHHHHhhccCCCEEEEE-eCCCcchHHHHHH
Confidence 2 13468999999999999998 5666666665543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=123.36 Aligned_cols=100 Identities=25% Similarity=0.297 Sum_probs=82.8
Q ss_pred CCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC-CCCCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP-fpd~SFDlV~Ss~~al 542 (870)
...||+||||||..-.++.- ..|+++|.++.|...+...++..+......++. +.+.|| ++++++|.|+|.++ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-L 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-L 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-E
Confidence 34689999999987776663 389999999999998887777666665553444 468998 89999999999865 5
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--+.++...|.++.|+|||||.++|.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 55688999999999999999999998
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-11 Score=127.51 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. +|+|+|+++.|+..++.. .....+...+...++ +.++||+|+|+. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~ 102 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQ-PPQALDLIFANA-S 102 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccC-CCCCccEEEEcc-C
Confidence 35789999999999999888753 799999999988766532 112233344444443 456899999986 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+||..+...+|.++.++|||||.|++..
T Consensus 103 l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 103 LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 8898899999999999999999999973
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-12 Score=117.12 Aligned_cols=93 Identities=25% Similarity=0.315 Sum_probs=56.9
Q ss_pred EEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC--CCCCCceeEEEecccccccc
Q 002884 472 LDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL--QFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L--Pfpd~SFDlV~Ss~~alhw~ 545 (870)
||||||+|.++..|+.. +++++|+|+.|+..++.++.................+ ....++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999988877653 8999999999997666544443322222222222221 12236999999985 58888
Q ss_pred cChHHHHHHHHhhcCCCcEE
Q 002884 546 IDGGKLLLELNRVLRPGGYF 565 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~L 565 (870)
.+...+|+.++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 88899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=130.01 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..+++ ..|+++|+++.|+..|+.... ..+ ..+...+...+|+++++||+|+++. .
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 3567999999999998877764 379999999999888764322 112 2334455678899999999999985 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCCcCc-hhH-HHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK-LGE-DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t-L~E-l~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..+...+|++++|+|||||.|++........ +.. ....|. .+....+....++++||...+
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~---------~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM---------LFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc---------cCCCHHHHHHHHHHCCCeEEE
Confidence 7777788999999999999999998864322110 110 111111 111233556778889998766
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-12 Score=114.51 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=71.0
Q ss_pred EEEECCCCchhHHHHhc-------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 471 SLDVGCGVASFGGYLFE-------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 471 VLDIGCGtG~~a~~La~-------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
|||+|||+|..+..|.. ..++++|+++.|+..+... ....+.+..+.+.+...+++.+++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999998877763 4899999999999888744 334566777777777889988999999999655455
Q ss_pred cccC--hHHHHHHHHhhcCCCc
Q 002884 544 WHID--GGKLLLELNRVLRPGG 563 (870)
Q Consensus 544 w~~D--~~~vL~Ei~RVLKPGG 563 (870)
+..+ ...+|.++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 5432 3799999999999998
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-11 Score=121.58 Aligned_cols=100 Identities=19% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cc-ccCC--CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GT-KRLQ--FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-da-e~LP--fpd~SFDlV~Ss 538 (870)
+..+|||||||+|.++..|+.. .|+|+|+++.|+..+.... ...+++.+.++. +. ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI-EEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH-HHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999998888653 7999999999998887443 344554444444 45 5666 778899999997
Q ss_pred ccccccccC--------hHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHID--------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++ .+|... ...+|.++.++|||||+|+++
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 54 555431 367999999999999999998
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=120.20 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=75.7
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-c-EEEEcCcccCCCCCCceeEEEeccccc
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-A-ISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~-~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+|||||||+|.++..+++. .|+|+|+++.++..+.... ...|+. . .+...+....|++ ++||+|++..+ +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-I 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHH-H
Confidence 37999999999988888753 7999999999888877443 344443 2 3333444455665 47999999764 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..+...+|.++.++|||||+|++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 6667889999999999999999999853
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=116.86 Aligned_cols=96 Identities=24% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..++. ..|+++|+++.|+..|+. .+...+++.+.++. +...++. .++||+|+|+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 478999999999998887764 389999999999998874 45556665444444 3456666 67899999963
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .+...++.+++++|||||+|++..
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 356889999999999999999874
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=119.28 Aligned_cols=143 Identities=21% Similarity=0.196 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI--PAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..|+.+.. ..+. ...+.+.+...++ ++||+|++..+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 5789999999999999999865 89999999999988875443 3333 2233444445554 7899999976544
Q ss_pred cccc-ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHH---HHHHHhhcccccccchhHHHHHHHHHhhccceEEEec
Q 002884 543 PWHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLGED---VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKP 616 (870)
Q Consensus 543 hw~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El---~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkg 616 (870)
|+.. +...++.++.+++++++++.+. + ....+... ...|..... ...+.+.........+..+||.+....
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFA-P-KTAWLAFLKMIGELFPGSSR-ATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEEC-C-CchHHHHHHHHHhhCcCccc-ccceEEecHHHHHHHHHHcCceeeeee
Confidence 4432 3478899999999988777764 2 21111111 111111111 111122223355667888999988754
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.9e-11 Score=127.20 Aligned_cols=98 Identities=16% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
..+|||||||+|.++.+|+.. .|+|+|+++.++..++ +.+...++.....+.+....++ +++||+|+++.+ +|+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhhC
Confidence 459999999999999999875 8999999999998876 4555667654444445444444 678999999854 6654
Q ss_pred c--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 546 I--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. +...++.++.|+|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 3478999999999999997764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=124.61 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=71.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++.+|||||||.|.++.+++++ +|+|+.+|+.....++ +.+.+.|+.. .+...+...++. +||.|+|..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 357899999999999999999886 8999999999887776 4555667652 333444455543 899999986
Q ss_pred cccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.-|.. .+...+|..+.|+|||||.|++..
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 533332 355899999999999999999763
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=135.89 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--CCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--FPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--fpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+. ..|+|+|+++.|+..|+.+. ...+....+...+...+| |++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 468999999999998877764 38999999999998887443 333443334445556677 88899999999854
Q ss_pred ccccc-------------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWH-------------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~-------------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|+. .+...+|++++|+|||||.|++.+.
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5532 2347899999999999999999853
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-10 Score=120.45 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=105.6
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI 513 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl 513 (870)
|+.+...+..+...-.+.+.+.+. ..++.+|||||||.|.++.++++. +|+|+++|+++...++ +.++++|+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~----L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLG----LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcC----CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCC
Confidence 455544455544444555555433 357999999999999999999876 8999999999988887 44566777
Q ss_pred C-cE-EEEcCcccCCCCCCceeEEEeccccccccc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhccc
Q 002884 514 P-AI-SAVMGTKRLQFPRNVFDLVHCARCRVPWHI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNL 589 (870)
Q Consensus 514 ~-~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~l 589 (870)
+ .+ +...+...+ .+.||-|+|... +++.- ....+|..++++|+|||.+++-+.............|-.---+
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgm-fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiF 196 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGM-FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIF 196 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhh-HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCC
Confidence 6 22 333333333 344999999854 55543 3589999999999999999986433333111112223221112
Q ss_pred ccccchhHHHHHHHHHhhccceEEE
Q 002884 590 TVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 590 a~~mcW~~va~~~~~L~daGfaI~r 614 (870)
....++. +........+.||.+..
T Consensus 197 PgG~lPs-~~~i~~~~~~~~~~v~~ 220 (283)
T COG2230 197 PGGELPS-ISEILELASEAGFVVLD 220 (283)
T ss_pred CCCcCCC-HHHHHHHHHhcCcEEeh
Confidence 3333332 22334445667777654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=116.38 Aligned_cols=100 Identities=22% Similarity=0.348 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC---CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ---FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP---fpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|+.. .|+|+|+++.++..|.. .+...++.++.++.+ ...++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999888764 89999999999988774 444556666655554 34333 566799999987
Q ss_pred ccccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+. .+|.... ..+|.++.|+|||||.|++.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 53 6665432 57899999999999999998
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.7e-10 Score=113.49 Aligned_cols=103 Identities=25% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC-CCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG-IPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg-l~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..++. .+++++|+++.++..++........ ....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 467999999999998877754 4799999999988887754432211 1233444455667777889999999854
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..+...+|..+.++|+|||+|++...
T Consensus 131 -l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 -LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 67777889999999999999999988743
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-10 Score=121.61 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=82.1
Q ss_pred ccccccHHHHHHHHHHHhhhhhc---CCCCCEEEEECCCCch----hHHHHhc---------CCEEEEeCChhhHHHHHH
Q 002884 442 TQFIHGALHYIDFIQQAVPKIAW---GKYTRVSLDVGCGVAS----FGGYLFE---------RDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 442 t~F~~gA~~Yid~L~~~Lp~i~~---g~~~~~VLDIGCGtG~----~a~~La~---------r~VtgVDiSp~ml~~A~v 505 (870)
+.|.+....+.......+|.+.. ..+..+|||+|||+|. ++..|++ ..|+|+|+++.|+..|+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 44555555544444444443321 2245699999999995 4444432 279999999999988774
Q ss_pred HHH---HHcCCC------------------------cEEEEcCcccCCCCCCceeEEEecccccccccC--hHHHHHHHH
Q 002884 506 QFA---LERGIP------------------------AISAVMGTKRLQFPRNVFDLVHCARCRVPWHID--GGKLLLELN 556 (870)
Q Consensus 506 q~A---~ergl~------------------------~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D--~~~vL~Ei~ 556 (870)
..- .-++++ ..+.+.+....+++.+.||+|+|..+ ++|..+ ...++.+++
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~ 229 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFA 229 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHH
Confidence 210 001111 23334455666777889999999866 444433 368999999
Q ss_pred hhcCCCcEEEEE
Q 002884 557 RVLRPGGYFVWS 568 (870)
Q Consensus 557 RVLKPGG~Lv~S 568 (870)
++|+|||+|++.
T Consensus 230 ~~L~pGG~L~lg 241 (264)
T smart00138 230 EALKPGGYLFLG 241 (264)
T ss_pred HHhCCCeEEEEE
Confidence 999999999997
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=108.91 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=76.8
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd 529 (870)
.|.+.+... +..+|||+|||+|.++..|+.+ .|+++|+++.++..++. .+...++..+.++..+..-++++
T Consensus 22 lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~~~v~~~~~d~~~~~~~ 96 (170)
T PF05175_consen 22 LLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGLENVEVVQSDLFEALPD 96 (170)
T ss_dssp HHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTCTTEEEEESSTTTTCCT
T ss_pred HHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCccccccccccccccccc
Confidence 455554432 4779999999999999998875 59999999999888774 44555665444444433334457
Q ss_pred CceeEEEecccccccccC-----hHHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHID-----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D-----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..||+|+|+.- ++.-.+ ...++.++.+.|||||.|++.
T Consensus 97 ~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 97 GKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 89999999853 222222 267899999999999999776
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=101.50 Aligned_cols=97 Identities=23% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..++.. .|+++|+++.++..+.... ...+.+...++.+ ... ++....+||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNA-RRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHH-HHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4679999999999999888764 7999999999998887443 3445444444433 222 4444468999998642
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ ....++.++.|+|+|||+|++.
T Consensus 98 -~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 -GG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred -ch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 22 3468999999999999999987
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-10 Score=120.11 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++..++.. +|+++|+++.++..|+... ...++... ...... .+++..+.||+|+++.. .
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~~-~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIY-LEQPIEGKADVIVANIL-A 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecc-cccccCCCceEEEEecC-H
Confidence 4689999999999988777653 7999999999998887543 44444332 222222 33455678999999742 2
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....++.++.++|||||+|++++
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 234678999999999999999984
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=108.39 Aligned_cols=100 Identities=27% Similarity=0.276 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..++.. .++++|+++.++..+..... ......+...+...++++.+.||+|+++. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAF-G 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEee-e
Confidence 5789999999999988887653 79999999988776654332 11123344455567778888999999975 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..+...+|.++.++|+|||+|++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7777888999999999999999999874
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=111.36 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||||||+|.++..|+. .+|+++|+++.|+..+.. .+.+.+++.+.++.+ ...++ ..++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 378999999999998877753 279999999999887763 445556655545444 45554 357899999863
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++ +...++..+.++|+|||.|++.
T Consensus 118 ~~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 LA---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh---CHHHHHHHHHHhcCCCCEEEEE
Confidence 32 4567889999999999999986
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=114.99 Aligned_cols=99 Identities=22% Similarity=0.417 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+..++||||||.|+.+.+|+.+ .|+++|+|+..+..+. +.|.+.+++....+.+.....++ +.||+|++..+ +++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v-~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVV-FMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESS-GGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEE-ecc
Confidence 4679999999999999999987 8999999999888765 67888899877777776666665 57999998633 444
Q ss_pred ccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... ...++..|...|+|||++++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 432 278999999999999999885
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=120.35 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-----CCcE-EEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG-----IPAI-SAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg-----l~~~-~~v~dae~LPfpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|++. .|+|+|+++.|+..++.+.. ..+ .... +...+... .+++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAK-EALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 4679999999999999999875 79999999999998875433 221 1122 22333222 25789999998
Q ss_pred ccccccccCh-HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhh-ccc---ccccchhHHHHHHHHHhhccceEE
Q 002884 539 RCRVPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAM-SNL---TVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 539 ~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~-~~l---a~~mcW~~va~~~~~L~daGfaI~ 613 (870)
.+++|+..+. ..++..+.+ |.+||+++ +..+... .......+... ... .....+. .......++.+||.+.
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~-~~~~l~~~g~~~~g~~~~~r~y~~s-~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTL-YYDILKRIGELFPGPSKATRAYLHA-EADVERALKKAGWKVA 295 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcch-HHHHHHHHHhhcCCCCcCceeeeCC-HHHHHHHHHHCCCEEE
Confidence 7655554333 345555554 55666644 4333211 11211222111 111 1111112 3356778889999998
Q ss_pred EecCc
Q 002884 614 RKPTT 618 (870)
Q Consensus 614 rkgf~ 618 (870)
+..+.
T Consensus 296 ~~~~~ 300 (315)
T PLN02585 296 RREMT 300 (315)
T ss_pred EEEEe
Confidence 85543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=111.48 Aligned_cols=143 Identities=24% Similarity=0.285 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||+|.++..|+.. .|+++|+++.|+..|+..... .+. ..+.+..++ ++..+++||+|++..+++|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d--~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD--LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC--chhccCCcCEEEEcchhhc
Confidence 4679999999999999988765 799999999999988754433 333 223333332 5556788999999865445
Q ss_pred ccc-ChHHHHHHHHhhcCCCcEEEEEECCCcCchh---HHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEe
Q 002884 544 WHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLG---EDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615 (870)
Q Consensus 544 w~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~---El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rk 615 (870)
|.. +...++.++.+++++++++.+. +...... .+...|.... .....++.........+..+||.+.+.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTFA--PYTPLLALLHWIGGLFPGPS-RTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEC--CccHHHHHHHHhccccCCcc-CCCCccccCHHHHHHHHHHCCCceEee
Confidence 442 2367888888887655544432 2111111 1111111111 111123333334566788889988774
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=107.84 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..++.+ +|+++|+++.++..++... ...++..+.++.+....+++ +.||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~~~~~-~~~D~v~~~~~- 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAPIELP-GKADAIFIGGS- 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCchhhcC-cCCCEEEECCC-
Confidence 35789999999999998887653 8999999999988887433 33444444444443333443 57999998642
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. .....++..+.++|+|||+|++.
T Consensus 107 ~---~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 107 G---GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 23567899999999999999986
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=120.51 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC--CCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG--IPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg--l~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+|||||||+|.++..++.+ .|+++|+++.++..++........ .....++.+...-.++..+||+|+|+..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP- 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP- 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC-
Confidence 469999999999999888764 899999999999888755443321 1223333332111234568999999854
Q ss_pred ccccc-----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHI-----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~-----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|... ....+|.++.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 12578999999999999999984
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=113.32 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+. .+|+|+|+++.|+..|+... ...++ ...+.+...+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCC--eEEEEecccccccCCCccEEEE
Confidence 3567999999999998877763 27999999999988776432 22222 2333344567777889999999
Q ss_pred cccccccccCh--HHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+ +||..+. ..+|.++.|+++ |.+++.
T Consensus 136 ~~~-lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 136 NHF-LHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CCe-eecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 975 7766664 579999999998 555554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=111.49 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccC--------CCCCCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRL--------QFPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~L--------Pfpd~S 531 (870)
.++.+|||||||+|.++..|++. .|+|+|+++ |. .++ ..+...+.... ++.+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 45789999999999999888763 699999988 21 112 23344444443 366789
Q ss_pred eeEEEecccccccccCh-----------HHHHHHHHhhcCCCcEEEEEECCCcCchhHHH
Q 002884 532 FDLVHCARCRVPWHIDG-----------GKLLLELNRVLRPGGYFVWSATPVYQKLGEDV 580 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~-----------~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~ 580 (870)
||+|+|+. +.+|..++ ..+|.++.|+|||||.|++. .+....+.++.
T Consensus 118 ~D~V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~-~~~~~~~~~~l 175 (209)
T PRK11188 118 VQVVMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK-VFQGEGFDEYL 175 (209)
T ss_pred CCEEecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE-EecCcCHHHHH
Confidence 99999974 35555332 35899999999999999997 34444444443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-09 Score=117.38 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
..+|||||||+|.++..++.+ .|+++|+++.++..++.... ..++...+...+.. ....+.||+|+|+.. +|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~--~~~~~~fDlIvsNPP-FH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVF--SDIKGRFDMIISNPP-FH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEcccc--cccCCCccEEEECCC-cc
Confidence 458999999999999888764 79999999999998875443 44555433333322 223578999999863 55
Q ss_pred ccc-----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHI-----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~-----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.. ....++.++.++|||||.|++..
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 422 23788999999999999999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.2e-10 Score=114.96 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
..++|.|||||+|..+..|+++ .|+|+|-|+.|+..|. .+.++..+...+...+ -|...+|++++| .++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa-----~rlp~~~f~~aDl~~w-~p~~~~dllfaN-Avl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA-----QRLPDATFEEADLRTW-KPEQPTDLLFAN-AVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH-----HhCCCCceecccHhhc-CCCCccchhhhh-hhh
Confidence 5789999999999999999886 8999999999887664 4555555545554444 356779999998 569
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||.+|...+|..+...|.|||+|.+..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEEC
Confidence 999999999999999999999999983
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=120.02 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~Ss~ 539 (870)
.+..+||||||+|.++..|+.. .++|+|+++.++..+.. .+...++.++.++.++ ..+ ++++++||.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4679999999999999999864 89999999999988874 4556777776666553 332 57899999999975
Q ss_pred cccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. .+|.... ..+|.++.|+|+|||.|.+.
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 3 7776433 57999999999999999997
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=105.29 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.... ..+....+...+....+ .++||+|+++...++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 4578999999999999888876 69999999999988875443 34443333333333322 4589999998542222
Q ss_pred ccC--------------------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HID--------------------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D--------------------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... ...+|.++.|+|||||.|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 110 2467999999999999999873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=111.82 Aligned_cols=102 Identities=15% Similarity=-0.002 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH------------HcCCCcEEEEcCcccCCCC-CCc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL------------ERGIPAISAVMGTKRLQFP-RNV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~------------ergl~~~~~v~dae~LPfp-d~S 531 (870)
++.+|||+|||.|..+.+|+++ .|+|+|+|+..+..+..+... .++....+.+.+...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4679999999999999999987 999999999988764321100 0122233455555555532 357
Q ss_pred eeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 532 FDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
||+|+...+.+|...+. ..++..+.++|||||++++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999865544443333 67999999999999976655
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-10 Score=118.44 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHH----cCCCcEE-EEc-CcccCCCCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALE----RGIPAIS-AVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~e----rgl~~~~-~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
+++|||+|||+|.++..|++. .|+|+|+++.|+..|+...+.. .++.... +.. +.+.+ .+.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 478999999999999999875 9999999999998887542211 1110001 111 11222 23499999997
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. +++..|+..++..+.++|||||.+++++
T Consensus 167 v-leHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 V-LEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred H-HHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 5 7777899999999999999999999984
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=111.17 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ 526 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP 526 (870)
....+.+.+..+ .++.+|||||||+|.++..|.. ..++|+|+|+.|+..|+... ....+...+... |
T Consensus 30 ~~~~~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~ 100 (204)
T TIGR03587 30 KLAMFARALNRL---PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P 100 (204)
T ss_pred HHHHHHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C
Confidence 344444444332 3467899999999998888865 37999999999887765321 122333444444 8
Q ss_pred CCCCceeEEEeccccccccc-ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~-D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++++||+|+|+.++.|..+ +...++.+++|++ +++++++.
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 89999999999865444432 2478999999998 56777764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=119.57 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..+++. .|+|+|+|+.++..|+.+. .++...+...+...+ +++||+|++..+ +
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~~-~ 238 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVGM-F 238 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeCc-h
Confidence 46789999999999999988763 7999999999888776433 233333333343333 478999999754 5
Q ss_pred cccc--ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHI--DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~--D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.. +...+|.++.|+|||||+|++..
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5543 34789999999999999999973
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=110.49 Aligned_cols=100 Identities=25% Similarity=0.421 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
...+++||+|||.|.++..|+.+ +++++|+++..+..|+.+.+ +.+.+.++...-.-..|.+.||+|+++.. ++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~~~~V~~~~~dvp~~~P~~~FDLIV~SEV-lY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---GLPHVEWIQADVPEFWPEGRFDLIVLSEV-LY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T-SSEEEEES-TTT---SS-EEEEEEES--GG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---CCCCeEEEECcCCCCCCCCCeeEEEEehH-hH
Confidence 45689999999999999999997 99999999998777664332 34555555554333467899999999875 55
Q ss_pred cccC---hHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHID---GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D---~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|..+ ...++..+...|+|||.|++..
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5543 3678999999999999999974
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=111.68 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~~alh 543 (870)
...-|||||||+|..+..|.+. .++|+||||.|++.|+.+. +...+..+++ +-+||..++||.|++. ++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e-----~egdlil~DMG~GlpfrpGtFDg~ISI-SAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE-----LEGDLILCDMGEGLPFRPGTFDGVISI-SAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh-----hhcCeeeeecCCCCCCCCCccceEEEe-eeee
Confidence 4788999999999999998775 8999999999999887422 2223344553 8899999999999997 5689
Q ss_pred cccC-------h----HHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHID-------G----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D-------~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|.-+ + ..++..++.+|++|+..++..
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 8621 1 356788999999999999973
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=106.72 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||+|||+|.++..++.. .++|+|+++.++..+.. .+...++....++.+...-++++++||+|+|+.-.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 3568999999999999888864 89999999999988774 444556654444444322256678999999963211
Q ss_pred ccc------cC-------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWH------ID-------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~------~D-------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .+ ...++.++.++|+|||.+++.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 100 00 135788999999999999996
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-09 Score=115.50 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=80.1
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEE--cCcccCC
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-GIPAISAV--MGTKRLQ 526 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v--~dae~LP 526 (870)
+++...++.+ .+++|||||||.|.++-.|+.+ .|+|+|.++....+. .++++. |.....+. .+.+.||
T Consensus 105 ~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF--~~i~~~lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF--EAIKHFLGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH--HHHHHHhCCCccEEEcCcchhhcc
Confidence 4455555433 5889999999999999888875 799999887654432 233322 23333333 3678888
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .+.||+|+|..+ +-+..++-..|.++...|+|||.|++.+
T Consensus 179 ~-~~~FDtVF~MGV-LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 179 N-LGAFDTVFSMGV-LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred c-cCCcCEEEEeee-hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 8 789999999753 4345788999999999999999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=103.06 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cC-CCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RL-QFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~L-Pfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+.. .++|+|+++.++..+. .+++. ....+.. .+ ++++++||+|+|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-----~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~- 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-----ARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT- 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-----HcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-
Confidence 4679999999999999888653 6899999998776553 34442 2333332 24 477889999999864
Q ss_pred cccccChHHHHHHHHhhcCC
Q 002884 542 VPWHIDGGKLLLELNRVLRP 561 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKP 561 (870)
+||..++..+|+++.|++++
T Consensus 85 l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe
Confidence 78888899999999888764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=107.92 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
.+.+|||+|||+|.++..++.. .++++|+++.++..++.... ..++. ..+...+...++.. .++||+|+++.+ +
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence 3679999999999998888654 79999999998887764433 33432 33333444445543 478999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..++..+|.++.++|+|||.++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 777888999999999999999999874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.5e-09 Score=110.16 Aligned_cols=92 Identities=24% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..++.. .|+|+|+++.++..|+.+ +...++..... ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~------~~~~~~~fD~Vvani~-~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY------LPQGDLKADVIVANIL-A- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE------EccCCCCcCEEEEcCc-H-
Confidence 5789999999999888777654 599999999999888754 34444421111 1222237999999742 1
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....++.++.++|||||+|++++
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 224678999999999999999984
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=105.62 Aligned_cols=100 Identities=21% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++...+...+... .+++++||+|+++.-.++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4679999999999998887763 799999999998877643 34445433333333322 356778999999742111
Q ss_pred cccC--------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHID--------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~D--------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.... ...++.++.++|||||.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1110 245788899999999999986
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-09 Score=108.21 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC-CCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP-fpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..+... .|+++|+++.++..+..... ..+....+...+...++ ...+.||+|+++.+ +
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~-l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM-L 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhH-h
Confidence 35779999999999998888765 79999999998887764433 23433333344444443 34578999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..++..+|..+.++|+|||.|+++.
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 666788999999999999999999884
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=112.96 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC-CceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR-NVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd-~SFDlV~Ss~~al 542 (870)
++++|||+|||+|.++...++. .|+|+|++|..+..|+ ..++..+++..........+..+. +.||+|++|..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL-- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL-- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhh--
Confidence 6899999999999877665543 7999999999888877 456666665322222222333444 58999999842
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..-...+..++.+.|||||+|++|+
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 1223688899999999999999995
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=111.13 Aligned_cols=130 Identities=20% Similarity=0.326 Sum_probs=91.2
Q ss_pred CCeeecCCCCccccccHHH-HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHH
Q 002884 432 GEIITFPGGGTQFIHGALH-YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQ 506 (870)
Q Consensus 432 Ge~~~FPgggt~F~~gA~~-Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq 506 (870)
+..+.|-.....|+++.-. =.+.|.+.++. ....+|||+|||.|.++..|++. .++-+|++...+..|+..
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N 201 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN 201 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh
Confidence 4456665555667766533 33445565554 23459999999999999999875 899999999888888754
Q ss_pred HHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccccCh-------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 507 FALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 507 ~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. ...++.+..+..+..-.+..+ .||+|+||. ++|... ..++.+..+.|++||.|++...
T Consensus 202 l-~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 202 L-AANGVENTEVWASNLYEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred H-HHcCCCccEEEEecccccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4 445555533444444445555 899999996 444332 3789999999999999999843
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-09 Score=107.86 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...++.++.++.++ .........||+|++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 46789999999999999888764 39999999999988874 4455566655555543 33333346899999864
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ . ..+...+.+.|+|||+|++.
T Consensus 155 ~-~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 A-G------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred C-c------ccccHHHHHhcCcCcEEEEE
Confidence 2 2 23446688999999999986
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=106.52 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc----CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR----LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~----LPfpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.|+.... +.++.+ ........+... .+++ .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 46789999999999999988874 6999999999988665 344433 122333333322 1233 56999997
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .+| ....+|.++.|+|||||.|+++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 521 111 1245689999999999999996
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=109.42 Aligned_cols=91 Identities=25% Similarity=0.376 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCC-CCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQ-FPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LP-fpd~SFDlV~Ss~~a 541 (870)
++.+|||||||.|.+..+|.+. ...|+++++.. +..+..+|++. ...+. ..|+ |++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~-----v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsqt- 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDN-----VAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQT- 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHH-----HHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHhH-
Confidence 5899999999999999999874 67899998874 44566788864 33332 4554 99999999999864
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++...++..+|.|+.|+ |...+++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEE
Confidence 88788899999999777 6677777
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.8e-09 Score=105.32 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cc-cCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TK-RLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae-~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..++. ..|+++|+++.++..++. .+...++..+.++.+ .. .++.....+|.|+...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 4578999999999999887763 389999999999988874 344455554444443 32 2332223467765421
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+...++.++.++|+|||+|++..
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345789999999999999999983
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-09 Score=106.40 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..|+.++ ...++. ...++. +.........+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 4578999999999998877764 37999999999988877433 344543 233433 443333345789999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. +++ +..++.++|+|||+|++.
T Consensus 150 ~~-~~~------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 150 AA-AST------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred cC-cch------hhHHHHHhcCcCcEEEEE
Confidence 43 332 335788999999999986
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-10 Score=116.86 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCC-CCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LP-fpd~SFDlV~Ss~~al 542 (870)
+.+++||+|||||.++..|... +++|+|||.+|+.. |.++|+--...+.+.. -++ ...+.||+|++..+ +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~k-----A~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAK-----AHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHH-----HHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 4889999999999999999876 89999999998754 4456653333333322 233 45678999999864 8
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.|.-+++.++.-+...|+|||.|.||+-....... .....-..++|. -......+...||.+.+
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~l~ps~RyAH~-----~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FVLGPSQRYAHS-----ESYVRALLAASGLEVIA 262 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---eecchhhhhccc-----hHHHHHHHHhcCceEEE
Confidence 88888999999999999999999999532221100 011112223332 11345567788888877
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=109.87 Aligned_cols=101 Identities=16% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~Ss~ 539 (870)
.+..+|||||||+|.++..++++ +++++|+ |.++..+. +.+.+.++. .+.++.+ ....+++. +|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 45689999999999999888765 6999998 67777665 344555553 3334443 34455654 69998876
Q ss_pred cccccccCh-HHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWHIDG-GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++.+|..+. ..+|++++++|||||.|++...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 534443332 6799999999999999998854
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-09 Score=112.91 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=79.3
Q ss_pred CccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc--C-CEEEEeCChhhHHHHHHHHHHHcCCCcEE
Q 002884 441 GTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE--R-DVLTMSFAPKDEHDAQIQFALERGIPAIS 517 (870)
Q Consensus 441 gt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~--r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~ 517 (870)
|..|..|.+.--....+.+..+ ..++.+|||+|||+|.++...+. . .|+|+|++|..+..|+ +.+...++....
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~ 213 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRI 213 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCE
T ss_pred CCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeE
Confidence 4567777655444444444333 23578999999999976644443 3 7999999999888877 456666766544
Q ss_pred EEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 518 AVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 518 ~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+... .......||+|++|. .. .-+..++..+.++|+|||+|++|+
T Consensus 214 ~v~~~--~~~~~~~~dlvvANI---~~-~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 214 EVSLS--EDLVEGKFDLVVANI---LA-DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EESCT--SCTCCS-EEEEEEES----H-HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEEe--cccccccCCEEEECC---CH-HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 44322 223358899999984 21 224678888999999999999995
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-09 Score=114.33 Aligned_cols=91 Identities=23% Similarity=0.349 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-----EcCcccCCCC--CCceeEEEec
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISA-----VMGTKRLQFP--RNVFDLVHCA 538 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-----v~dae~LPfp--d~SFDlV~Ss 538 (870)
.+.++|+|||+|..++.+++. +|+|+|+++.|+..|. + +.++... ...++..++. ++|.|+|+|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~-----k-~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK-----K-HPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh-----c-CCCcccccCCccccccccccccCCCcceeeehhh
Confidence 448999999999777777775 9999999999886544 2 2222221 1122334444 8999999999
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.| +||. |...++++++|+||+.|-++
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEE
Confidence 87 9997 68999999999999988443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=98.30 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC---cEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP---AISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~---~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..|+.. +|+++|+++.++..++... ...+.. ......+.. -++.+..||+|+++...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~-~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLF-EPFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEecccc-ccccccCceEEEECCCc
Confidence 5679999999999999888765 9999999999988776443 333433 233333332 24556689999987432
Q ss_pred cccc----------------cC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWH----------------ID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~----------------~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++.. .+ ...++.++.++|||||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2200 01 245799999999999999886
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=104.95 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ....++.++.++.++ ...+.+.+.||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~-l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT-LKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 46789999999999998777642 799999999999888744 444566555555543 44444567899999874
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++ .+...+.+.|||||.|++.
T Consensus 154 ~-~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 A-GP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred C-cc------cchHHHHHhhCCCcEEEEE
Confidence 2 33 2334677899999999986
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=107.63 Aligned_cols=98 Identities=15% Similarity=0.031 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC----------------cEEEEcCcccCCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP----------------AISAVMGTKRLQFP 528 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~----------------~~~~v~dae~LPfp 528 (870)
++.+|||+|||.|..+..|+++ .|+|+|+|+..+..+. .++++. +.+.+.+...++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4679999999999999999987 9999999999777643 233322 23344455555432
Q ss_pred -CCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 529 -RNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 529 -d~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
...||+|+...+.++...+. ..++..+.++|+|||++++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999765434433332 78999999999999975543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=109.71 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCCCCCCceeEEEecccc-
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQFPRNVFDLVHCARCR- 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LPfpd~SFDlV~Ss~~a- 541 (870)
.++.+|||+|||+|.++..++. ..++|+|+++.|+..++.+ +...++.. .+...+...+|+++++||+|+++.-.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 4678999999999988765543 4899999999999887754 44455554 34455677889888899999996210
Q ss_pred ----cccc--cC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 ----VPWH--ID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 ----lhw~--~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..-+ .+ ...+|.++.|+|||||++++..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 1100 11 3689999999999999999874
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=101.65 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-ccc-CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKR-LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~-LPfpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..++. .+|+++|+++.++..++.. +...++ ..+.++.+ ... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4678999999999998876643 2799999999998887744 444452 33444433 332 3433468999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. ...+...+|.++.++|||||+|++.
T Consensus 118 ~~----~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 118 GG----GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CC----CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 53 1245688999999999999999986
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=107.87 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCccc-CCCCCCc----eeEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKR-LQFPRNV----FDLV 535 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~-LPfpd~S----FDlV 535 (870)
++.+|||+|||+|..+..|+++ .|+++|+|+.|+..+..+..... ++.......+... ++++... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4578999999999988877643 79999999999998876554332 2322233344332 4444332 2333
Q ss_pred Eeccccccccc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH
Q 002884 536 HCARCRVPWHI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN 584 (870)
Q Consensus 536 ~Ss~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~ 584 (870)
++. ..+++.. +...+|++++++|+|||.|++. .........+..++.
T Consensus 143 ~~g-s~~~~~~~~e~~~~L~~i~~~L~pgG~~lig-~d~~~~~~~~~~aY~ 191 (301)
T TIGR03438 143 FPG-STIGNFTPEEAVAFLRRIRQLLGPGGGLLIG-VDLVKDPAVLEAAYN 191 (301)
T ss_pred Eec-ccccCCCHHHHHHHHHHHHHhcCCCCEEEEe-ccCCCCHHHHHHhhc
Confidence 333 2344433 2367899999999999999997 333333333444443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-10 Score=96.81 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=66.4
Q ss_pred ccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccc---eeccccccccCCCCccchhhhhcccccccCCcC
Q 002884 726 MDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFG---IYHDWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 726 mDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
||+|||.|-+++.|.+.+. .+|+-+|.. ..+..+.++.... +.+.=.+.++.-+++||+|++.++|... .+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 7999999999999998832 255555544 5666666665433 4444456653334999999999999887 46
Q ss_pred hhhHHHhhhhcccCCcEEEE
Q 002884 802 LVPVMAEVDRIVRPGGKLIV 821 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~ii 821 (870)
...+|.|+.|+|||||++||
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 88999999999999999997
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-09 Score=108.77 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+...|.|+|||.+.++..+... .|...|+.+. ...+..++...+|++++++|+|++..+++ -
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM--G 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM--G 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh--C
Confidence 4579999999999999888754 7999998653 12356788899999999999999865433 3
Q ss_pred cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhH
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNEC 621 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sC 621 (870)
.+...+|.|++|+|||||.|+|+.. ...+.. +..-...+...||.+..+...|.+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV---------~SRf~~------------~~~F~~~~~~~GF~~~~~d~~n~~ 189 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEV---------KSRFEN------------VKQFIKALKKLGFKLKSKDESNKH 189 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEE---------GGG-S-------------HHHHHHHHHCTTEEEEEEE--STT
T ss_pred CCcHHHHHHHHheeccCcEEEEEEe---------cccCcC------------HHHHHHHHHHCCCeEEecccCCCe
Confidence 6789999999999999999999821 111111 222334678889999887666543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=101.52 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=91.7
Q ss_pred ccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc--E
Q 002884 444 FIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA--I 516 (870)
Q Consensus 444 F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~--~ 516 (870)
|...+ ...++++...+..........+|||+|||.|.+...|++. .++|+|.|+..+..|+ ..|...+.++ .
T Consensus 43 Fg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~ 121 (227)
T KOG1271|consen 43 FGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIR 121 (227)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCccee
Confidence 44444 3455666655542212333449999999999999999975 5999999999988877 6888888874 3
Q ss_pred EEEcCcccCCCCCCceeEEEecc--cccccccC-----hHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHH
Q 002884 517 SAVMGTKRLQFPRNVFDLVHCAR--CRVPWHID-----GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583 (870)
Q Consensus 517 ~~v~dae~LPfpd~SFDlV~Ss~--~alhw~~D-----~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w 583 (870)
+.+.+...-.+..+.||+|+--. -++..+++ +..++.-+.++|+|||+|+|+. .+.+..|+.+.+
T Consensus 122 f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 122 FQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred EEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 34444433356677899887521 11223322 2457888999999999999974 445555555444
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-08 Score=85.89 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=69.4
Q ss_pred EEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCC-CCCCceeEEEeccccccc
Q 002884 470 VSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQ-FPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LP-fpd~SFDlV~Ss~~alhw 544 (870)
+|||+|||.|.++..++. ..++++|+++..+..++. .....+.....++ .+..... .....||+|+++.+ +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccc-eee
Confidence 489999999999888876 389999999987766652 1122222223333 3333333 24578999999864 554
Q ss_pred -ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 -HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 -~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
......++..+.++|+|||+++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 556689999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=106.95 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfpd~SFDlV~Ss 538 (870)
.+++|||||||.|.++..++. ..++++|+++.++..|+..+....++. .+.+. .+...++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 578999999998855433321 269999999999998885443435553 24444 3444443234679999998
Q ss_pred ccccccc-cChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWH-IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++++|. .+...+|..+.++|+|||+|++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 656664 67799999999999999999997
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=97.60 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=61.8
Q ss_pred EEEeCChhhHHHHHHHHHHHc--CCCc-EEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 491 LTMSFAPKDEHDAQIQFALER--GIPA-ISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 491 tgVDiSp~ml~~A~vq~A~er--gl~~-~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
+|+|+|+.|+..|+.+..... +... .+.+.+...+|+++++||+|+++++ +|+..+...+|++++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999998864432211 1223 3445567899999999999999864 78888999999999999999999998
Q ss_pred EEC
Q 002884 568 SAT 570 (870)
Q Consensus 568 S~~ 570 (870)
...
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=94.15 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=69.2
Q ss_pred CCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCC-C-cEEEEcCcccC--CCCCCceeEEEeccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGI-P-AISAVMGTKRL--QFPRNVFDLVHCARC 540 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl-~-~~~~v~dae~L--Pfpd~SFDlV~Ss~~ 540 (870)
+.+|||+|||+|.++..++. ..++++|+++..+..++..+.. .++ . ..+...+...+ +++++.||+|+++.-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 35899999999998877764 4899999999987777644443 333 2 33344444444 377899999999843
Q ss_pred cccccc-------ChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHI-------DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~-------D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+.... ....++.++.++|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 222111 1257899999999999999987
|
... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.7e-08 Score=106.04 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc---CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR---LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~---LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|++. .|+++|+++.|+.... ..+..+ ..+..++.+... ++++..+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl-~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT-NMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46789999999999999988874 6999999987654322 344333 122333444321 2223468999999
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... . ..+...++.++.++|||||+|++.
T Consensus 209 Dva-~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA-Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC-C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 742 2 223356777999999999999996
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-08 Score=102.46 Aligned_cols=179 Identities=17% Similarity=0.231 Sum_probs=111.4
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
+-|.|.||--...++..+|...-..........++||||+|.|..+..|+.. .|++.++|+.|.. ...++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~-----rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW-----RLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH-----HHHhCCCe
Confidence 3456777776667666665532111111224678999999999999999885 8999999999743 34457763
Q ss_pred cEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHH-HHHhhc---ccc
Q 002884 515 AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVE-IWNAMS---NLT 590 (870)
Q Consensus 515 ~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~-~w~~~~---~la 590 (870)
. .+...+.-.+..||+|.|.+ ++.-+.++..+|++|++.|+|+|+++++....+...-|.-. .+..-. .+.
T Consensus 139 v----l~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 V----LDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred E----EehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 2 22222332356799999975 47778889999999999999999999885433322222111 111100 111
Q ss_pred cccchhHHH-HHHHHHhhccceEEEecCchhHHhhhcCCCCCCCCCCC
Q 002884 591 VSMCWELVT-IKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEE 637 (870)
Q Consensus 591 ~~mcW~~va-~~~~~L~daGfaI~rkgf~~sCy~~r~~~~pplC~~d~ 637 (870)
..+|+.-. ....-+.-+||.+.+=. +.|-+|..|.
T Consensus 214 -g~~~E~~v~~l~~v~~p~GF~v~~~t-----------r~PYLcEGD~ 249 (265)
T PF05219_consen 214 -GATFEEQVSSLVNVFEPAGFEVERWT-----------RLPYLCEGDL 249 (265)
T ss_pred -CCcHHHHHHHHHHHHHhcCCEEEEEe-----------ccCccccCcc
Confidence 13343321 22244677899987722 3488997543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.9e-08 Score=99.40 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC-CCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF-PRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf-pd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..+...+. ..++..+.++.+.....+ +.+.||+|++..+ +
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLK-QLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHH-HCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 45789999999999988877654 79999999999888774443 345554444544322222 3478999998742 3
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .+...+.+.|+|||.|++..
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEE
Confidence 3 23456789999999999873
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=105.73 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
.....|.|+|||-+.++.. ....|+.+|+.+. .-.+..+++.++|+++++.|++++.++ ...
T Consensus 179 ~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMG 240 (325)
T ss_pred cCceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhc
Confidence 3467899999999988761 1137999988653 224567888899999999999998543 234
Q ss_pred cChHHHHHHHHhhcCCCcEEEEE
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+...++.|++|+|||||.|+|+
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEE
Confidence 68899999999999999999997
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-08 Score=97.47 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--------CCCCce
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--------FPRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--------fpd~SF 532 (870)
.++.+|||||||+|.++..++.+ .|+++|+++.+ ...+ ..+...+....+ ++.++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN--VDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC--ceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 46789999999999988777643 59999999853 1112 222233333222 456789
Q ss_pred eEEEecccc---cccccC-------hHHHHHHHHhhcCCCcEEEEE
Q 002884 533 DLVHCARCR---VPWHID-------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 533 DlV~Ss~~a---lhw~~D-------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+|++..+. -+|..+ ...+|..+.++|+|||+|++.
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999985320 112222 257899999999999999996
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.8e-08 Score=101.77 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+..+|||+|||+|.++..|+.. .|+++|+++.++..++.... ......+.++.++...+++.++||+|+|+.-.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 35679999999999998888753 79999999999888775443 22223334444332234446789999996321
Q ss_pred ccc------------c-------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPW------------H-------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw------------~-------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. + .....++.++.++|+|||++++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 110 0 00145778888999999999996
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=103.76 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
+..+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. .+.++.++..-++++++||+|+|+.-.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3568999999999999888863 79999999999988874 45555653 344444432223456689999997211
Q ss_pred c------------cccc--------C----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 V------------PWHI--------D----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 l------------hw~~--------D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ ++.+ + ...++.++.++|+|||+|++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 0000 0 1467888999999999999873
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=108.55 Aligned_cols=104 Identities=16% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--CCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--fpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++. .+...|+...+...+...++ ++.++||+|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 46789999999999988887753 79999999999988874 44555665444444444443 3467899999532
Q ss_pred -cc----------cccccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 -CR----------VPWHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 -~a----------lhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|. +.|.... ..+|..+.++|||||+|++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 1122111 3689999999999999999854
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=106.97 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcC------CCcEEEEcCc------ccCCCCCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERG------IPAISAVMGT------KRLQFPRN 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~erg------l~~~~~v~da------e~LPfpd~ 530 (870)
.++..+||+|||-|.-+.....+ .++|+||+...+..|+.+.-.-++ .++.++..+. ..+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35789999999999766555443 899999999988888765432211 2334444442 45677777
Q ss_pred ceeEEEeccccccccc----ChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 531 VFDLVHCARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.||+|-|-+| +|+.- ....+|+.+.+.|||||+|+.+.|.
T Consensus 196 ~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 196 RFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred Ccceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 7999999865 78762 2368999999999999999998443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=99.82 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~Ss~ 539 (870)
...+|||||||+|.++..|+.+ .|++|++.+.+...|+...+....-..+.++.++ ..+ +....+||+|+||.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4789999999999999999876 8999999999998888666653333344444443 222 23345799999984
Q ss_pred cccccc-----------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWH-----------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~-----------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
=.+.-. -+...+++-+.++|||||.|.+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 211100 12357889999999999999997
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=102.29 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEeccccc-
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARCRV- 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~al- 542 (870)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. .+.++.++..-+++.++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 68999999999999888753 79999999999998874 44555553 3444444321234456899999973111
Q ss_pred -----------cccc--------C----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 -----------PWHI--------D----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 -----------hw~~--------D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.+ + ...++.++.++|+|||+|++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 0 1467899999999999999973
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=98.86 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-C---CCcEEE-EcCc-ccCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-G---IPAISA-VMGT-KRLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-g---l~~~~~-v~da-e~LPfpd~SFDlV~ 536 (870)
..++||+||||.|.+++.++++ +|+++|+++.++..|+..+..-. + -+.+.+ +.+. .-+....+.||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999988765 79999999999888875443211 1 233333 3343 22344567899999
Q ss_pred ecccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. .-++... ...++..+.++|+|||+|++.
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 863 2344322 157789999999999999986
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=100.46 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=70.7
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCCCCCCceeEEEeccccc-
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQFPRNVFDLVHCARCRV- 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LPfpd~SFDlV~Ss~~al- 542 (870)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++.. +.++.++..-+++...||+|+|+.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 68999999999998888753 79999999999988874 444455542 444544322245555899999973111
Q ss_pred -----------cccc------------ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 -----------PWHI------------DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 -----------hw~~------------D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|.+ ....++.++.++|+|||+|++..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111 12467888999999999999873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=99.89 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~da-e~LPfpd~SFDlV~Ss~ 539 (870)
..+.+|||||||+|.++..|+.. .|+++|+++.++..|+..+......+.+.++ .+. .-+.-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35679999999999999888653 7999999999888777544322212333334 333 22332246799999852
Q ss_pred cccccc-----cChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWH-----IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~-----~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++-. .....++.++.++|+|||+|++.
T Consensus 145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2211 11268999999999999999986
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=107.46 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=76.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC----CCCCceeE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ----FPRNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP----fpd~SFDl 534 (870)
..++.+|||+|||+|..+..|+.. .|+++|+++.++..++. .+...|+..+.++. +...++ +..++||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE-NAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH-HHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 346789999999999988777652 69999999999988774 45556776544444 445554 45678999
Q ss_pred EEec-c----cccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 535 VHCA-R----CRVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 535 V~Ss-~----~alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|++. . ..++.+++ ...+|.++.++|||||+|++++..
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9962 1 12332222 247799999999999999998543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=107.67 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEE-Ec-CcccCCC--CCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISA-VM-GTKRLQF--PRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~-dae~LPf--pd~SFDlV~S 537 (870)
.++.+|||+|||+|..+..++. ..|+++|+++.++..++. .+...|+..... .. +...+++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4678999999999988877765 379999999999988874 445566653221 22 2233333 5678999985
Q ss_pred ----c-ccccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 538 ----A-RCRVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 ----s-~~alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ ...++-+++ ...+|.++.++|||||.|++++..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2 122322222 146899999999999999999543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=103.60 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
..+|||||||+|.++..|+. ..|+++|+|+.++..|+.+ +...+....+...+.....++ .+.||+|+|+.-.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 46999999999999887764 3799999999999988754 444555333333343222222 45799999975322
Q ss_pred ccc--------------------cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWH--------------------IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~--------------------~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.-. .+. ..++..+.+.|+|||.+++.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 110 011 25667778899999999886
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=103.85 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc----------CCCcEEEEcCc------ccCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER----------GIPAISAVMGT------KRLQF 527 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er----------gl~~~~~v~da------e~LPf 527 (870)
++.+|||||||-|.-....... .++|+|++...+.+|..+...-. ...+.+...+. ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999988755555443 89999999999999887662211 12233334432 12233
Q ss_pred CCCceeEEEecccccccccCh----HHHHHHHHhhcCCCcEEEEEEC
Q 002884 528 PRNVFDLVHCARCRVPWHIDG----GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~----~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
....||+|-|-++ +|+.-.. ..+|..+...|||||+|+.+.+
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3459999999764 8876332 5789999999999999999843
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=98.87 Aligned_cols=105 Identities=14% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEec-
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCA- 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss- 538 (870)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++.. +...++..+..+. +...++...+.||+|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n-~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIAN-INRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH-HHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46789999999999988777642 799999999999887744 4455665544443 445555555679999862
Q ss_pred ccc----cc--------cccC--------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCR----VP--------WHID--------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~a----lh--------w~~D--------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.|. +. |... ...+|..+.++|||||+|++++..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 111 11 1111 135899999999999999998543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=105.83 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCC-CCCCceeEEEe
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQ-FPRNVFDLVHC 537 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LP-fpd~SFDlV~S 537 (870)
..++.+|||+|||+|..+..++. ..|+++|+++.++..+.. .+...|+..+.+ ..+...++ +..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 34678999999999987776664 379999999999988874 455567765434 34455555 45678999996
Q ss_pred c-cc----ccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 538 A-RC----RVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 s-~~----alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. .| .+.-+++ ...+|..+.++|||||++++++..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 11 1111111 145688999999999999998543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-07 Score=96.88 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHH------------HHHcCCCcEEEEcCcccCCCC---C
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQF------------ALERGIPAISAVMGTKRLQFP---R 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~------------A~ergl~~~~~v~dae~LPfp---d 529 (870)
++.+||+.|||.|.-+.+|++. .|+|+|+|+..+..+..+. ...++..+.+.+.|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4679999999999999999986 9999999999777654321 012244455566666666532 2
Q ss_pred CceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.||+|+-..++++..++. ..++..+.++|+|||.+++.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5799998654434443443 78999999999999998876
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-07 Score=99.55 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. .|+++|+++.++..|+. .+...++..+.++.++ ...+.....||+|++..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 35789999999999999888753 49999999999888773 4445566655555543 34444446799999863
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ++ .....+.++|+|||.+++.
T Consensus 158 g-~~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 G-VD------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred c-hH------HhHHHHHHhcCCCCEEEEE
Confidence 2 22 2334578899999999885
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=104.38 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEe--
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHC-- 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~S-- 537 (870)
.++.+|||+|||+|..+..++. ..|+++|+++.++..++ +.+...|+..+.++. +...++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 4578999999999987776654 27999999999998877 455566776544444 344444 5678999995
Q ss_pred --cccc-------cccccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 --ARCR-------VPWHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 --s~~a-------lhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+... +.|.... ..+|.++.++|||||+|++++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2111 1122221 3589999999999999999953
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=92.73 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCCC-CCCceeEEEecccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQF-PRNVFDLVHCARCR 541 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LPf-pd~SFDlV~Ss~~a 541 (870)
..+|||+|||+|.++..|+.. .|+++|+++.++..|+.+. ...+. .+...+.. .++- ..+.||+|+++.-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999887653 7999999999998887443 33343 23333332 2221 13579999997421
Q ss_pred ccc------------c---------cC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPW------------H---------ID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw------------~---------~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. + .+ ...++..+.++|+|||.|++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 0 01 136677788999999999987
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=87.89 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=77.8
Q ss_pred cCCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEe
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHC 537 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~S 537 (870)
...++.+++|||||+|+++..++. .+|+++|-++..+.... +.+...|+++...+.+. +.|+-.+ +||.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE
Confidence 345788999999999999988872 29999999998887766 45666678888777764 4444222 7999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .....+|..+...|||||.+++.
T Consensus 109 GGg-----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 109 GGG-----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCC-----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 742 45789999999999999999987
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=93.57 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||+|||+|.++..++. .+|+++|+++.|+..++.. .....+...+...+. ....||+|+++...+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 356899999999999877754 3799999999987766532 112333444444443 346899999986533
Q ss_pred ccccC-------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHID-------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D-------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.... ....+..+.++|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 31111 135667788899999987765
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.1e-07 Score=91.52 Aligned_cols=100 Identities=27% Similarity=0.467 Sum_probs=73.5
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC--CCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP--fpd~SFDlV~Ss~ 539 (870)
...+||||||.|.+...++.. .++|+|+....+..+. ..+...+++++.++.+ +.. +. ++++++|.|+.++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 448999999999999888763 8999999999888876 4555668888777765 332 22 5679999999874
Q ss_pred cccccccCh--------HHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDG--------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. -+|.... ..+|..+.++|+|||.|.+.+
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3 5565321 589999999999999999983
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=90.03 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC-CceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR-NVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd-~SFDlV~Ss~~a 541 (870)
..++.+||+||||+|..++.|++. +|++++..+.....|..+ ....|+.++..+.++-...++. ..||.|+... +
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~-L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta-a 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN-LETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA-A 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH-HHHcCCCceEEEECCcccCCCCCCCcCEEEEee-c
Confidence 457899999999999999998875 999999999877777643 4456776777777776666665 7899999873 3
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
....+ ..+.+-|||||.+++-
T Consensus 148 a~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 148 APEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred cCCCC------HHHHHhcccCCEEEEE
Confidence 44222 3356679999999986
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=91.46 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEE-EEcCc-ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAIS-AVMGT-KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~-~v~da-e~LPfpd~SFDlV~S 537 (870)
.+++||+||||+|.++..+++. +|+++|+++.++..++..+....+ .+... .+.+. .-+....+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999988887654 699999999988877654333211 12222 23332 222223578999998
Q ss_pred cccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .++... ...++..+.++|+|||+|++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 632 233222 257889999999999999987
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=87.26 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+++ +|+++|+++.++..++..+.. .........+...+++++..||+|+++ +++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n---~Py 87 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGN---LPY 87 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEEC---CCc
Confidence 4679999999999999999876 899999999988777644322 112334445567788877789999997 344
Q ss_pred ccChHHHHHHHHh--hcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
+.. ...+..+.. .+.++|+|++.
T Consensus 88 ~~~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH-HHHHHHHHhcCCCcceEEEEEE
Confidence 432 333444433 24588888886
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=88.05 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=78.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh---h-Cc-----cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE---R-GL-----FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e---R-Gl-----ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||+|-.+.+|..+ |- ..|+-+|.. ..+..+.+ + |+ +.+++ ...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEEC
Confidence 36999999999999999775 21 123334433 33333322 1 21 23333 33344444 589999887
Q ss_pred cccccccCC--cChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 791 HLFSQLKNR--CKLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 791 ~lfS~~~~r--c~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
--|-..+.- -....++.++-|+|+|||.++|-- ...+..+|+.++. .+.......+-+||-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 666432211 112467889999999999999873 3455566666554 334445566778888888
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=100.31 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC--CCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ--FPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP--fpd~SFDlV~S 537 (870)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++ +.+...|+..+.++.+ ...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 45789999999999988777652 7999999999988877 4455567655444443 34332 33 78999997
Q ss_pred cc-cc----cc------cccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 AR-CR----VP------WHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~-~a----lh------w~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.. |. +. |.... ..+|..+.++|||||.|++++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 41 11 11 11111 3579999999999999998843
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.5e-07 Score=92.47 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=65.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss 538 (870)
.+++.+|||||||+|.+++.|+.. .|+++|+.+.....|+..+ ...++.++.++.++....++ ...||.|++.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l-~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNL-ARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHH-HHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHH-HHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 357899999999999988888753 5899999998887777443 44466666666665444443 4679999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ +. . +-..+.+.||+||+|++-
T Consensus 149 ~a-~~---~---ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 AA-VP---E---IPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SB-BS---S-----HHHHHTEEEEEEEEEE
T ss_pred ec-cc---h---HHHHHHHhcCCCcEEEEE
Confidence 43 43 2 224467789999999986
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-08 Score=93.71 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=68.8
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCC-CCccchhhhhcccccccC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTY-PRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~ty-PrtyDllHa~~lfS~~~~ 798 (870)
.-.+|||+|||+|.++..|++.+. .++-+|.. ..+.. +.+....++ ...... +++||+|+|.++|.+..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc-
Confidence 345799999999999999988877 45555544 33333 222222221 112333 48999999999999877
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
+...+|-+|-|+|||||+++|.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4788999999999999999999865
|
... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-06 Score=97.72 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cc----cCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TK----RLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae----~LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.|+..|.. .+...++.++.++.+ .. .+++.+++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45679999999999999999875 89999999999998874 455556655545444 32 234666789999987
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ++.. ...++..+.+ |+|++++++|-
T Consensus 375 P---Pr~g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 P---PRAG-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred c---CCcC-hHHHHHHHHh-cCCCeEEEEEe
Confidence 4 3322 3455655555 79999999983
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.8e-07 Score=91.96 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=89.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChh----HHHhhCc--cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~----~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|.+|.+|+.. +- ..|+-+|.. ..+. .+.+.|+ +-+++.-.+.+.. +.+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 46999999999988877642 21 245555554 4443 3344565 4555655555554 679999988541
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEee--c----CCCceEEEEEeC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAF--S----KDQEGVLSAQKG 859 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~--~----~~~e~iL~~~K~ 859 (870)
..+..++.++.|+|||||.+++-+.......+..+++.+.|.+...+ + +.+-.+.|.+|+
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 45778999999999999999999988889999999999999975442 1 123346666663
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=91.24 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-----fpd~SFD 533 (870)
+.++|||||||+|.-+..|+. ..|+++|+++.++..|+..+ ...|+. .+.++.+ + ..|+ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 467999999999976555543 28999999999888887544 445553 3333333 3 2222 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+|++.. .......++..+.++|||||++++....
T Consensus 147 ~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 147 FAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 999852 2234468899999999999999987443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.2e-06 Score=86.32 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHH-hc--CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYL-FE--RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~L-a~--r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||+|||+|.++..+ .. ..|+++|+++..+..+.. .+...++....++.+ . ..++.....||+|+++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP-- 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP-- 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC--
Confidence 4579999999999999754 33 289999999998777664 344445544444444 2 22333345799999984
Q ss_pred cccccCh-HHHHHHHHh--hcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
+|.... ..++..+.. +|+|+|+++++
T Consensus 130 -Py~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 130 -PFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -CCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 444333 445555544 48999999998
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.9e-06 Score=90.32 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-CC--CcEEEEcC-cc-cCC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-GI--PAISAVMG-TK-RLQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-gl--~~~~~v~d-ae-~LP-fpd~SFDlV~ 536 (870)
..++||+||||.|.+++.+++. +|+.+|+++.++..++..+.... ++ +.+.++.+ .. -+. .+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4789999999999999999875 68999999998887775443321 11 23444443 21 121 2356899999
Q ss_pred ecccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. .-++... ...+++.+.++|+|||+|+..
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 853 2333221 146899999999999999875
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=92.47 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=73.0
Q ss_pred HHHHhhhhhcC--CCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--c-
Q 002884 455 IQQAVPKIAWG--KYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--K- 523 (870)
Q Consensus 455 L~~~Lp~i~~g--~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e- 523 (870)
|.+.+|.+... ....+||+||||.|...-.|.+. .|.+.|+||..+..-..+.... ......++.+. .
T Consensus 57 L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-e~~~~afv~Dlt~~~ 135 (264)
T KOG2361|consen 57 LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-ESRVEAFVWDLTSPS 135 (264)
T ss_pred HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-hhhhcccceeccchh
Confidence 44444444432 22338999999999877666653 6899999998665433211110 00112233332 2
Q ss_pred -cCCCCCCceeEEEecccccccccC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 524 -RLQFPRNVFDLVHCARCRVPWHID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 524 -~LPfpd~SFDlV~Ss~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.-|...+++|+|++.+++.--+++ ...++..++++|||||.+++.+
T Consensus 136 ~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 136 LKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 345678999999987653332333 3789999999999999999984
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=90.95 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=69.8
Q ss_pred EEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 470 VSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+|||||||+|.++..|+.. .|+|+|+|+..+..|+ ..+...++.....+...---++. +.||+|+||.=.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999888864 8999999999988887 45666675443444442222233 3899999985333321
Q ss_pred -----c-----Ch--------------HHHHHHHHhhcCCCcEEEEE
Q 002884 546 -----I-----DG--------------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 -----~-----D~--------------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++ ..++.++.+.|+|||++++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 0 01 25678899999999999987
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-06 Score=88.93 Aligned_cols=98 Identities=20% Similarity=0.359 Sum_probs=78.1
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCC--CCCCceeEEEeccc
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQ--FPRNVFDLVHCARC 540 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LP--fpd~SFDlV~Ss~~ 540 (870)
..+||||||.|.+...++.. .++||++...-+..+. +.+.+.+++++..++. + .-|. ++++++|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999875 8999999998777766 6777888855555544 3 2222 45669999998764
Q ss_pred ccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-+|+... ..+|..+.++|+|||.|.+.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 7787432 58999999999999999998
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-07 Score=94.76 Aligned_cols=113 Identities=19% Similarity=0.362 Sum_probs=75.9
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCC-CCChhHHH----hhCcc---ceec-cccccccCCCCccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNS-PDTLPIIY----ERGLF---GIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~-~~tl~~i~----eRGli---g~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
.|||+|||.|+++..|.+. ++ +|+-++. +.++..+. ++|+- .+++ |..+. ++|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 5999999999999988754 22 2222332 24444443 34653 3333 33222 45789999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecChh----------------hHHHHHHHHHcCCceEEE
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS----------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~----------------~~~~~~~~~~~l~W~~~~ 844 (870)
|.+.. +...+|-++.|+|||||++++.+... ....+..++..-.+++..
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 87664 36789999999999999999986421 135566677777777643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.4e-06 Score=92.57 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=79.5
Q ss_pred CCCccccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH---H
Q 002884 439 GGGTQFIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL---E 510 (870)
Q Consensus 439 gggt~F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~---e 510 (870)
.|..++.... ..|.+.|.... +......++||+||||+|..++.+++. +|+++|+++.++..|+..... .
T Consensus 123 DG~~Q~se~DE~iYHE~Lvhp~--m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~ 200 (374)
T PRK01581 123 DKQLQFSSVDEQIYHEALVHPI--MSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN 200 (374)
T ss_pred CCeeccccccHHHHHHHHHHHH--HHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc
Confidence 3444444433 34555555432 122334679999999999988888764 799999999988877631110 1
Q ss_pred c---CCCcEEEE-cCc-ccCCCCCCceeEEEeccccccccc-----ChHHHHHHHHhhcCCCcEEEEE
Q 002884 511 R---GIPAISAV-MGT-KRLQFPRNVFDLVHCARCRVPWHI-----DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 511 r---gl~~~~~v-~da-e~LPfpd~SFDlV~Ss~~alhw~~-----D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ..+.+.++ .+. .-++-..+.||+|++... -+... ....++..+.+.|+|||+|++.
T Consensus 201 ~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 201 KSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1 12334343 343 224445678999998631 11110 1156899999999999999886
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.8e-06 Score=72.44 Aligned_cols=96 Identities=31% Similarity=0.362 Sum_probs=66.8
Q ss_pred EEEECCCCchh--HHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCccc--CCCCC-CceeEEEeccccc
Q 002884 471 SLDVGCGVASF--GGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKR--LQFPR-NVFDLVHCARCRV 542 (870)
Q Consensus 471 VLDIGCGtG~~--a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~--LPfpd-~SFDlV~Ss~~al 542 (870)
+||+|||+|.. ...+... .++++|+++.++..+...... .+.. ......+... +++.. ..||++ +..+.+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444442 688999999888773322222 2222 2333444433 78887 589999 655545
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.. ....+.++.++|+|+|.+++..
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 5544 7899999999999999999984
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=89.28 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
....+|||||+|.|.++..++++ +++.+|+ |..+..+. + .+.+.++.++.--|+|. +|+|+...++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~--~~rv~~~~gd~f~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E--ADRVEFVPGDFFDPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H--TTTEEEEES-TTTCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c--ccccccccccHHhhhcc--ccceeeehhh
Confidence 35679999999999999888764 8888998 54444433 2 44566666653366766 9999998875
Q ss_pred cccccCh-HHHHHHHHhhcCCC--cEEEEEECCCc
Q 002884 542 VPWHIDG-GKLLLELNRVLRPG--GYFVWSATPVY 573 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPG--G~Lv~S~~p~~ 573 (870)
..|.++. ..+|+.+++.|+|| |.|++......
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 5665433 78999999999999 99999865433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-06 Score=87.49 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcCc-
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMGT- 522 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~da- 522 (870)
...+.|.+.++. .+.+||+||||||..+.+++.. ...-.|+++..+.... ....+.+.+++. ...+.
T Consensus 13 pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~-a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIR-AWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHH-HHHHhcCCcccCCCeEeecC
Confidence 344445555443 2336999999999877777664 5666677776432222 233344443321 12222
Q ss_pred -ccCCC------CCCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 523 -KRLQF------PRNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 523 -e~LPf------pd~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
...|. ..++||+|+|.++ +|...- ...+|..+.++|+|||+|++-+++.++
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred CCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 22232 3568999999864 665532 278999999999999999999776554
|
The function of this family is unknown. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-06 Score=94.09 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-cc----CCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KR----LQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~----LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++.++.++.++ .. +++.+.+||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34679999999999999999874 89999999999988874 4455566665555543 22 23445689999986
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.- ...-...++..+. .|+|+++++++
T Consensus 370 PP---r~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 370 PP---RKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred cC---CCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 32 1111256666555 48999998887
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-06 Score=93.79 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Cccc-C---CCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GTKR-L---QFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-dae~-L---Pfpd~SFDlV~ 536 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|..+ +...++. .+.++. +... + ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N-~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999988664432 799999999999988744 4444553 344444 3322 2 12346899999
Q ss_pred ecccccccc--------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWH--------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+..-.+.-. .+...++..+.++|+|||+|++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 974222111 0123455667899999999998643
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.4e-06 Score=89.57 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCC-CCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQF-PRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPf-pd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+ +.+...++.++.++.+ ...+.. ..+.||+|+++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP--- 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP--- 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---
Confidence 4579999999999999999875 8999999999999887 4555666665555544 333322 345799999873
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+. ......+.++...++|+++++++.
T Consensus 249 Pr-~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 249 PR-RGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CC-CCccHHHHHHHHHcCCCeEEEEEC
Confidence 21 122334445555578999999873
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=90.66 Aligned_cols=102 Identities=21% Similarity=0.440 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHH--Hc--CCC------------------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFAL--ER--GIP------------------------ 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~--er--gl~------------------------ 514 (870)
.+..+|||||-.|.++..+++ +.|+|+||++..++.|....-. .+ ...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 357899999999999888886 3899999999988877643211 00 000
Q ss_pred ------cEE-----EEcC-cccCCCCCCceeEEEecccc----cccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 515 ------AIS-----AVMG-TKRLQFPRNVFDLVHCARCR----VPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ------~~~-----~v~d-ae~LPfpd~SFDlV~Ss~~a----lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++. .++. +.-|-+....||+|+|-..+ +.|+++. ..+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 1111 11223445679999984211 4466554 78999999999999999996
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-07 Score=100.67 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=64.1
Q ss_pred ccccccccccchhHHhhhcCC-C--eEEEEeccCCCCCChhHHHhhCcc---ceeccccccccCCC-Cccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSPDTLPIIYERGLF---GIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~~tl~~i~eRGli---g~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-..|||+|||.|+++..|.+. + |..+.+.|.........+.++|+. -+++.-.+.+ +|| .+||+|.+...+-
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECCchh
Confidence 356999999999999999875 3 444444332211112233445653 2333222332 454 8999999876665
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.. +...+|.||-|+|||||.|+|.+
T Consensus 198 h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 543 35679999999999999999964
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-06 Score=100.70 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Ccc-cCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GTK-RLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-dae-~LPfpd~SFDlV~Ss~ 539 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+.+.. ..++. .+.++. +.. -+.-..+.||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3679999999999999988864 69999999999998885544 44553 344444 332 1211146899999963
Q ss_pred cccccc----------cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH----------IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~----------~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-.+.-. .+...++..+.++|+|||.|+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 222111 123567888899999999999874
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-07 Score=95.45 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=68.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCccc---eeccccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLFG---IYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGlig---~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|+..+. +|+-+|.. ..+..+.+ .|+.. +++.-.+.+..+ +.+||+|.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999998864 55566654 66665554 35532 333222334434 5899999999888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.... +...+|-++-|+|||||+++|.
T Consensus 123 ~~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVA---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhC---CHHHHHHHHHHHcCCCeEEEEE
Confidence 7654 3567999999999999999875
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=88.30 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHH--HcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFAL--ERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~--ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||+|||+|.|+..|++. .|+|+|+++.|++....+.++ ..+..++. ....+.++..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCceeeeEEEeehH-
Confidence 5779999999999999999875 799999999887653221111 00111111 1111222222246888887642
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
.+|..+.++|+| |.+++-..|-
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEcChH
Confidence 258899999999 8877654443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=89.17 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
...++||.|||.|+++..|+-. .|..+|..+..+..|+.........-..++..+.+.+-.+...||+|++-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4679999999999999877543 8999999999887776433322222234556666666545679999999888666
Q ss_pred ccc-ChHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHI-DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~-D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... |...+|..+...|+|+|++++-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 553 3489999999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-07 Score=99.67 Aligned_cols=105 Identities=18% Similarity=0.348 Sum_probs=71.0
Q ss_pred cccccccccccccccccchhHHhhhcCC-Ce--EEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~v--wvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+++.-+ ..|||+|||.||++.+|+++ ++ ..+++++.+..--...|.++||...+..-|..+..+|-+||-|-+.+
T Consensus 58 ~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~ 135 (273)
T PF02353_consen 58 LGLKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIE 135 (273)
T ss_dssp TT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEES
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEe
Confidence 344444 35999999999999999988 65 34443333322333456789998777766666777777999999999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+|-+... -....++-.++|+|+|||.+++.
T Consensus 136 ~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 136 MFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred chhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887642 35678899999999999999977
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.9e-07 Score=95.19 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=69.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC-------c--cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG-------L--FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG-------l--ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||+|.++..|.+. +. --+|+-+|.. .+|..+.+|. . +-+++.-++.+ +|| .+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 46999999999999988764 21 0156666655 7887776652 1 23344445554 466 799999987
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
..+.... +...+|.||-|+|||||.++|.|
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766543 56789999999999999999986
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.8e-06 Score=86.43 Aligned_cols=102 Identities=24% Similarity=0.398 Sum_probs=60.2
Q ss_pred CCCEEEEECCCCc----hhHHHHhc------C---CEEEEeCChhhHHHHHHHHH---HHcCCC----------------
Q 002884 467 YTRVSLDVGCGVA----SFGGYLFE------R---DVLTMSFAPKDEHDAQIQFA---LERGIP---------------- 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG----~~a~~La~------r---~VtgVDiSp~ml~~A~vq~A---~ergl~---------------- 514 (870)
+.-+|+.+||++| +++..|.+ . +|+|.|+++..+..|+.-.- .-++++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 45555544 1 79999999998887753100 000111
Q ss_pred ---------cEEEEcCcccCCCCCCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 515 ---------AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ---------~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+...+....+.+.+.||+|+|.++++.+.... ..++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1122333333334457899999988766665433 78999999999999999997
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-06 Score=92.12 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=68.6
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhcccccccC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
....|||+|||+|.++..|...+. .|+-+|.. ..+..+.+++- +..+..-.+.++..+.+||+|.++..|-..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~-- 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC-- 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc--
Confidence 346799999999999999987653 45555553 67777777653 233333334544334799999886555322
Q ss_pred CcChhhHHHhhhhcccCCcEEEEec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-++..+|.||-|+|||||+|+|..
T Consensus 117 -~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 -GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 256789999999999999999984
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=92.78 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHH--HHH-Hc---CCCcEEEEc-Cccc-CCCCCCcee
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQ--FAL-ER---GIPAISAVM-GTKR-LQFPRNVFD 533 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq--~A~-er---gl~~~~~v~-dae~-LPfpd~SFD 533 (870)
++.++|||||||+|..+..++++ +|+++|+++.++..++.. +.. .. .-+.+..+. |... +....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35689999999999999888764 799999999988877642 111 10 113333333 3322 333356899
Q ss_pred EEEecccccccccCh-----HHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDG-----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~-----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|++.. ..++.... ..+++.+.++|||||.|++..
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999973 23332221 468899999999999999874
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-06 Score=93.51 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++.+|... +- ..|+-+|.. .++..+.++++- +++.-.+.+. ...+||+|++..+|-...
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVD-ARTGDVRDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCc-EEEcChhhCC-CCCCceEEEEehhhhhCC--
Confidence 356999999999999999876 11 134555543 788888888743 3332234432 237999999988886654
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++-|+|||||+++|..
T Consensus 104 -d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 104 -EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -CHHHHHHHHHHhCCCCcEEEEEc
Confidence 45779999999999999999974
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9e-06 Score=89.02 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCEEEEECCCCc----hhHHHHhc--------CCEEEEeCChhhHHHHHHHHHH---HcCCC------------------
Q 002884 468 TRVSLDVGCGVA----SFGGYLFE--------RDVLTMSFAPKDEHDAQIQFAL---ERGIP------------------ 514 (870)
Q Consensus 468 ~~~VLDIGCGtG----~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~---ergl~------------------ 514 (870)
.-+|+..||++| +++..|.+ -+|+|+|+++..+..|+.-.-. -++++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 34544433 1699999999998877642100 00110
Q ss_pred ----------cEEEEcCcccCCCC-CCceeEEEecccccccccC-hHHHHHHHHhhcCCCcEEEEE
Q 002884 515 ----------AISAVMGTKRLQFP-RNVFDLVHCARCRVPWHID-GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ----------~~~~v~dae~LPfp-d~SFDlV~Ss~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+...+....+++ .+.||+|+|.++++++... ...++..+++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01122222222333 5789999998776666443 379999999999999999886
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.4e-06 Score=86.53 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCEEEEECCCCchhHHHHhc-------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE-------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
+.+|||+|||+|.++..++. ..|+++|+++.++..|+... ....+...+....++ +++||+|+||.=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence 57999999999999887754 27999999999877766321 123334444444444 568999999842
Q ss_pred ccccc-cC----------hHHHHHHHHhhcCCCcE
Q 002884 541 RVPWH-ID----------GGKLLLELNRVLRPGGY 564 (870)
Q Consensus 541 alhw~-~D----------~~~vL~Ei~RVLKPGG~ 564 (870)
.+... .+ ...++..+.|+|+||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11100 11 14578888887777776
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.4e-05 Score=82.32 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc----
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM---- 520 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---- 520 (870)
..+.+.+.+.+....+. .+..+||+|||+|.++..|+.. .|+++|.|+..+..|. +.|+..++...+.+.
T Consensus 131 EE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEeccc
Confidence 34555555555544333 3458999999999888777653 8999999999887765 445544443333332
Q ss_pred C-c--ccCCCCCCceeEEEecccccccccCh--------------------------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 521 G-T--KRLQFPRNVFDLVHCARCRVPWHIDG--------------------------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 521 d-a--e~LPfpd~SFDlV~Ss~~alhw~~D~--------------------------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. . ...+...+.+|+++||.-.+. +.|. ..++.-+.|.|+|||.+++. ..
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le-~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE-LV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE-ec
Confidence 1 1 344566799999999853222 1111 13556678999999999998 33
Q ss_pred CcCchhHHHHHHH
Q 002884 572 VYQKLGEDVEIWN 584 (870)
Q Consensus 572 ~~~tL~El~~~w~ 584 (870)
....-+.+...|-
T Consensus 287 ~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 287 ERKEHSYLVRIWM 299 (328)
T ss_pred ccccCcHHHHHHH
Confidence 3344455555553
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.8e-07 Score=95.32 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=64.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCC-Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
..|||+|||+|+++..|... +. .|+-+|.. +.+..+.+|- .+.+.+.=+.. .+|| .+||+|++...|-+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEEEEEhhhHHh
Confidence 45999999999999988654 32 33444433 5555555542 23333322222 2465 79999999665544
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.. ..+...+|-++-|+|||||+|+|.|.
T Consensus 130 ~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 130 LS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 32 12567899999999999999999974
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-06 Score=92.57 Aligned_cols=96 Identities=21% Similarity=0.348 Sum_probs=74.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc------cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL------FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl------ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-+|||++||+|=+|..|++.-= --.|+-+|-. ++|.+..+|-. |-.++.=.|.++ || .|||++-+...|-
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehhh
Confidence 3599999999999999987621 3456667755 89999988865 345677778877 66 9999986644443
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
... +++.+|-||-|||+|||.+++-+
T Consensus 131 nv~---d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT---DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC---CHHHHHHHHHHhhcCCeEEEEEE
Confidence 333 68899999999999999888875
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=5e-06 Score=86.60 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=61.9
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|.++..|.+. +- .+|+-+|.. ..+..+.+ .++ +-+++.-++.+ ++| .+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 46999999999999988754 11 123333332 44443332 233 23343323333 355 79999998766
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
|.... +...+|.|+-|+|||||++++.+.
T Consensus 124 l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 65433 355789999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=81.79 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-cccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-TKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-ae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||.|.|+|.++.+|+.. +|+++|+-+.....|+.++.. .++.. +....+ ....-+++ .||+|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEEEc
Confidence 57899999999999999999952 899999999888888755444 35443 333333 33333333 89999874
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+|..+..+|+|||.+++-.
T Consensus 171 ------mp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 171 ------LPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred ------CCChHHHHHHHHHHhCCCcEEEEEc
Confidence 2689999999999999999999873
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-06 Score=88.78 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCcc--ceeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLF--GIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||+|||+|.++.+|++++. .|+-+|.. ..+..+ .+.|+- ....|.. . ..++.+||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-A-AALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-h-ccccCCCCEEEEeccccc
Confidence 4699999999999999998763 55666654 555543 334542 1111221 2 234678999999887764
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec-----------Chh---hHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD-----------EPS---AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird-----------~~~---~~~~~~~~~~~l~W~~~~~ 845 (870)
... -.+..++-++.|+|+|||+++|-. +.. ...+|+.++.. |++...
T Consensus 107 ~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~ 167 (195)
T TIGR00477 107 LQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKY 167 (195)
T ss_pred CCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEe
Confidence 432 356789999999999999854431 011 24667777764 776654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.8e-07 Score=81.68 Aligned_cols=96 Identities=27% Similarity=0.434 Sum_probs=64.9
Q ss_pred cccccccccchhHHhhhcC--CCeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKD--LQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~--~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
..|||+|||.|.++.+|++ .+. .|+-+|.. ..+.++.+| ++ +-+++ |+ ......+..||+|.+.+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 3589999999999999998 554 34444543 555554444 33 33444 45 33345556699999988
Q ss_pred cccc--ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQ--LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~--~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|+. +-.......+|-.+-+.|||||++||++
T Consensus 79 -~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 -FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 421 2221345678999999999999999975
|
... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.9e-05 Score=86.87 Aligned_cols=98 Identities=20% Similarity=0.119 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPfpd~SFDlV~Ss~~al 542 (870)
.+.+|||+|||+|.++..|+.. .|+|+|+++.++..|+ +.+...++....++.+ ... ++-....||+|++..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP--- 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP--- 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---
Confidence 3579999999999999988865 8999999999998877 4455556654444444 322 221224599999874
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+...-...++..+. .++|+++++++-
T Consensus 309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 309 PRRGIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCcHHHHHHHH-hcCCCeEEEEEe
Confidence 22211245555554 589999999983
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=91.57 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEe
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHC 537 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~S 537 (870)
+.....+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.+..++.++ ..+ -|+++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 445789999999999999888864 8999999998777766 45566788777666553 212 278899999998
Q ss_pred cccccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++. -+|.... ..+|..+.++|||||.|.+.
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 754 7775321 68999999999999999998
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-06 Score=82.23 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
+.|||+|||+|.++.+|...+. .|+-+|.. ..+..+.+ .|+ +-+++ |+.+. .+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4599999999999999988754 44555543 44443332 232 22233 45442 3569999877655421
Q ss_pred cc------------------CCcChhhHHHhhhhcccCCcEEEEecChhh-HHHHHHHHHcCCceEEEeecC-CCceEEE
Q 002884 796 LK------------------NRCKLVPVMAEVDRIVRPGGKLIVRDEPSA-VTEVENFLKSLHWEILFAFSK-DQEGVLS 855 (870)
Q Consensus 796 ~~------------------~rc~~~~vl~EmDRILRPgG~~iird~~~~-~~~~~~~~~~l~W~~~~~~~~-~~e~iL~ 855 (870)
.. .++.+..+|-++.|+|+|||.+++...... ...+...++...|........ -...-|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 174 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELF 174 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceEEE
Confidence 11 122356789999999999999999876555 677788888888888765332 2333444
Q ss_pred EEe
Q 002884 856 AQK 858 (870)
Q Consensus 856 ~~K 858 (870)
+-|
T Consensus 175 ~~~ 177 (179)
T TIGR00537 175 AIK 177 (179)
T ss_pred EEE
Confidence 444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=84.34 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC---CC---------cEEEEcCcccCCCCC-C
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG---IP---------AISAVMGTKRLQFPR-N 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg---l~---------~~~~v~dae~LPfpd-~ 530 (870)
.++.+||..|||.|.-+..|+++ +|+|+|+|+..+..+..+...... .. ..+++.|...++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 45679999999999999999987 899999999876655322211000 01 122333444444332 4
Q ss_pred ceeEEEec--ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCA--RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss--~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||+|+=. +|+++ ......+...+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEE
Confidence 79999853 44454 123489999999999999995443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=90.86 Aligned_cols=101 Identities=26% Similarity=0.279 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++..++|+|||.|....++.. .+++|++.++..+..+.... ...++.. .+.+.+....||+++.||.|.+...
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~-~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA-KKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH-HHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 4566899999999988877764 38999999998777666332 2233321 2234445788999999999999764
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+.+++..++.|++|+|+|||+++..
T Consensus 188 -~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 -VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 667788999999999999999999975
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=87.34 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=85.4
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhH--HHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcE--EEEcCcccCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFG--GYLFERDVLTMSFAPKDEHDAQIQFALERGIPAI--SAVMGTKRLQF 527 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a--~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~--~~v~dae~LPf 527 (870)
...+++.+.++...+++..|||==||||.++ +.|...+++|.|++..|+..|..++-. .++... ..++++..+||
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCC
Confidence 3456666666666678889999999999876 455667999999999999988765544 334322 33447899999
Q ss_pred CCCceeEEEecc-----cccccc--cC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 528 PRNVFDLVHCAR-----CRVPWH--ID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 528 pd~SFDlV~Ss~-----~alhw~--~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++++||.|++-. +...-. .. ...+|..+.++|++||+++|..
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999999999831 001100 11 2678999999999999999984
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-06 Score=88.56 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=74.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH----HHhhCccc---eeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI----IYERGLFG---IYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~----i~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|++++. +|+-+|.. ..+.. +..+|+-. ...|+.+ + +++.+||+|-+.++|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4699999999999999998853 45555543 44433 34455522 2234432 2 3467899999987774
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec---Ch--------h---hHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD---EP--------S---AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird---~~--------~---~~~~~~~~~~~l~W~~~~~ 845 (870)
... .-.+..+|-+|.|+|||||++++-. .. . ...++...+. .|++...
T Consensus 107 ~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 107 FLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 432 3356789999999999999965431 10 0 1345666666 5877553
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=85.12 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHhhhh----hcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EE
Q 002884 447 GALHYIDFIQQAVPKI----AWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-IS 517 (870)
Q Consensus 447 gA~~Yid~L~~~Lp~i----~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~ 517 (870)
+...|+..|.+++... .......+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++.. +.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3566888777776431 11224679999999999877766543 899999999999998865554424432 22
Q ss_pred EE-cCc-ccC----CCCCCceeEEEecccccccccCh
Q 002884 518 AV-MGT-KRL----QFPRNVFDLVHCARCRVPWHIDG 548 (870)
Q Consensus 518 ~v-~da-e~L----Pfpd~SFDlV~Ss~~alhw~~D~ 548 (870)
+. ... ..+ ..+.+.||+|+|+. +|+...
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNP---Pf~~s~ 203 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNP---PFHASA 203 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCC---CCcCcc
Confidence 22 221 111 12467899999995 555443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-06 Score=94.38 Aligned_cols=94 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceeccccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||+|||.|.|+.+|+..+. +|+-+|.. ..+.++.++. + +..++.-.+.+...+++||+|=|.++|-+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999988753 56666765 6777766542 2 22333333554433479999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. +...+|-++-|+|||||.++|..
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65 46789999999999999999985
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-06 Score=85.58 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=73.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCc--cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
++|||+|||+|.++..|+.. +- ..|+-+|.. ..+.++ .+.|+ +-+++.=.+.+ ..+.+||+|-+++ +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-h-
Confidence 57999999999988876532 11 234445544 333332 33465 33444322333 2357999998865 2
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCC-ceEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLH-WEIL 843 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~-W~~~ 843 (870)
..+.+++-.+.|+|||||.+++.........+..+.++++ |...
T Consensus 119 -----~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 -----ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred -----hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 3567788899999999999999988888888888877643 4443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.3e-06 Score=92.75 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH--HHhh--C---ccceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI--IYER--G---LFGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~--i~eR--G---lig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+.|||+|||.|.++.+|+..+-- .|+-+|.. ..+.. +..+ + -+-+++.=.+.++. +.+||+|+|.+++-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 57999999999999999877421 13334432 22211 1111 1 12233322244444 78999999988875
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+ +-+...+|.++-|+|||||.|||.
T Consensus 201 H---~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 H---RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 346778999999999999999986
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=97.28 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---------------CCCcEEEEcCcccCCCC
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---------------GIPAISAVMGTKRLQFP 528 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---------------gl~~~~~v~dae~LPfp 528 (870)
+.+|||||||+|.++..|+.. .|+++|+++.++..|..+..... ....+.++.++..-++.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999888753 79999999999988875544321 01234444443222233
Q ss_pred C--CceeEEEecccccccc---------------------------------cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 529 R--NVFDLVHCARCRVPWH---------------------------------IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 529 d--~SFDlV~Ss~~alhw~---------------------------------~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ..||+|+||.-.+... .|. ..++.++.++|+|||.+++.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 3699999974322100 111 45678888999999999987
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=83.33 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-C----CCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-F----PRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-f----pd~SFD 533 (870)
+.++|||||+|+|..+..|+.. .|+++|.++.....|+..+ .+.|+. .+.++.+ + +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4789999999999988888752 6999999999888877444 455664 3444444 2 3333 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+|+.-. +......++..+.++|+|||++++-....
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 999752 33445788999999999999999875443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=84.31 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=77.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
..|||+|||.|..+.++...+.- .|+-+|.. ..+..+.++ |+-..++-.+. ..+||+|.|+-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 56999999999999888776431 24444443 444443332 33111111111 11799998853321
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecChh-hHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEPS-AVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~~-~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.+..++-++.|+|||||++|+.+-.. ....+...++...|.+......+.=..++++|
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 24467889999999999999997543 45778888888889887554444334555555
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6e-05 Score=79.63 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc--Cc-ccCC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM--GT-KRLQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~--da-e~LP-fpd~SFDlV~ 536 (870)
..++||+||.+.|.-+..|+.. +++++|+++.+...|+..++ +.|+.. +..+. ++ +.+. +..++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 5789999999999888777653 69999999999998885554 455543 33333 22 2222 4578999999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.- ++-.+...+|..+.++|||||++++-..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 74 2445568999999999999999998743
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=81.51 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=73.3
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCccceeccccc-cccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGLFGIYHDWCE-SFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h~wce-~f~tyPrtyDllHa~~lfS~ 795 (870)
.+|||+|||.|.++.+|... +- .+|+-+|.. ..+..+.+ .|+-. +.-.+. ....++..||+|.+.+.+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc--
Confidence 56999999999999888654 21 134444443 34444322 24321 111121 123456789999886543
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~ 842 (870)
..+..++.++-|+|+|||++++.. .......+..+++...|..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 346778999999999999999976 4556778888898888853
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.6e-06 Score=83.97 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=78.6
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-C-CCccchhhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-Y-PRSYDLLHAD 790 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-y-PrtyDllHa~ 790 (870)
-.+|||+|||+|.++..|+.. +- .+|+-+|-. ..+..+.+ .|+ +-+++ |+.+.++. + +.+||+|.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 467999999999999998764 21 134444433 44444332 244 23344 34255542 5 4799998764
Q ss_pred cccc-----cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEE
Q 002884 791 HLFS-----QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 791 ~lfS-----~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.... ....+.....+|-++.|+|+|||.|+|. +.......+...+..-.|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 2221 1112234578999999999999999986 6666777888888888887764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.6e-05 Score=86.72 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCC-CCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTY-PRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~ty-PrtyDllHa~~lfS~~ 796 (870)
..|||+|||+|.++.+++..+. -.|+-+|.. ..+..+.++ |+-..+...+.....+ +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5699999999999988877654 245555544 445444443 3322333333323334 47999999965433
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEE
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~ 844 (870)
.+..++-++-|+|||||++|+..-. +-...+...+++. |++..
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 2456888999999999999998643 2346667767766 77654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.6e-05 Score=84.67 Aligned_cols=97 Identities=16% Similarity=0.346 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcC-cccCCCCCCceeEEEec---
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMG-TKRLQFPRNVFDLVHCA--- 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~d-ae~LPfpd~SFDlV~Ss--- 538 (870)
++++|||+|||+|.++..-+++ +|+++|.|.. ...|. +.++..++..++- +.+ .+.+-+|-..+|+|+|-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~-~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFAR-KIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHH-HHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5789999999999887766654 9999999884 34444 5667777765443 333 34444557789999983
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
+|++ +-.-+..+|-.=.+-|+|||.++
T Consensus 138 y~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 2212 11234677777789999999988
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.2e-06 Score=87.66 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=63.8
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC-Cccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
.|||++||+|-++..|.+.-----.|+-+|-. ++|.++.+| |+ |-.+..-+|.++ || .+||.|=+...|-
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fglr- 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGLR- 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-GG-
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhHH-
Confidence 69999999999999887641111256666755 888888776 33 344445567754 65 8999987644443
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+-+++...|-||-|||||||.|+|-|
T Consensus 128 --n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 --NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp --G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 33568889999999999999999876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.9e-05 Score=77.98 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-----fpd~SFD 533 (870)
..++||+|||++|.-+..|+.. +|+++|+++.....|+. +....|+. .+.++.+ + +.|+ .+.+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~-~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARE-NFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH-HHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHH-HHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4679999999999888888753 89999999998877763 44555653 3444444 2 2222 1245899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+|+.-. ...+...++..+.++|+|||++++-....
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 999852 33455788999999999999999985443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=74.48 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHHhhh--hhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC----CCc
Q 002884 446 HGALHYIDFIQQAVPK--IAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG----IPA 515 (870)
Q Consensus 446 ~gA~~Yid~L~~~Lp~--i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg----l~~ 515 (870)
.++..+..+|...... ......+.+||+||||+|..+..++.. .|+..|..+ -+...+ ..+...+ ...
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccc
Confidence 4555555666553210 011235789999999999766655543 899999988 444433 3333222 111
Q ss_pred EEEEcCc-ccC--C-CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 516 ISAVMGT-KRL--Q-FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 516 ~~~v~da-e~L--P-fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....+- ..+ . +....||+|+++.+ +........++.-+.++|+|+|.++++.
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 2222221 111 1 23468999999986 4444555899999999999999988874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.1e-05 Score=83.50 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhhhccccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.-.+|||+|||.|.++..|.+. +- -+|+-+|.. ..+..+.++- -+.++..=.+.+ ..+.+||+|+++..|....
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW-QPPQALDLIFANASLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-CCCCCccEEEEccChhhCC
Confidence 3467999999999999999764 11 234444543 5555554442 122332212222 1247999999988876544
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecCh----hhHHHHHHHHHcCCceE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEP----SAVTEVENFLKSLHWEI 842 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~----~~~~~~~~~~~~l~W~~ 842 (870)
+...+|.+|-|+|||||.+++.-+. .....++.+.....|..
T Consensus 108 ---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 108 ---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 4567999999999999999997321 11223455555555643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.4e-06 Score=86.77 Aligned_cols=97 Identities=9% Similarity=0.189 Sum_probs=64.2
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||.|.++..|.+. +- .+|+-+|.. ..|..+.++ |. +-+++ ..+..+| ..||+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeee
Confidence 46999999999999888763 21 244555543 666665543 32 22333 2333333 468998887
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.++..... -....+|-+|.|+|+|||.|+|.|..
T Consensus 130 ~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhCCH-HHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 77665432 13457999999999999999999753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.8e-06 Score=83.53 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=64.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc--cceeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..|||+|||.|.+...|.+..- -..++-+|.. ..+.....+.- +-.++.=.+.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 5699999999999999987631 0112333332 44444444431 2233322234444458999999988776443
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++.|+|+|||++++..
T Consensus 113 -~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 -DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEe
Confidence 56789999999999999999975
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00044 Score=75.62 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=96.3
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHh-c-----CCEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcC-c---
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF-E-----RDVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMG-T--- 522 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La-~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~d-a--- 522 (870)
.|...+..+......-+||||.||.|....... . ..|...|+++..+...+ +.+.++|+..+ .+..+ +
T Consensus 122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 122 LIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCH
Confidence 344443333233456799999999997543332 2 17889999998887776 57778888765 44443 2
Q ss_pred ccCCCCCCceeEEEecccccccccCh---HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc-cccccchhHH
Q 002884 523 KRLQFPRNVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN-LTVSMCWELV 598 (870)
Q Consensus 523 e~LPfpd~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~-la~~mcW~~v 598 (870)
..+.--.-..++++.+. ++....|- ...|.-+.++|.|||+|+++..|....+.-...+.....+ .+-.|.-+.-
T Consensus 201 ~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 201 DSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred hHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCH
Confidence 22222234468888763 35544543 5678999999999999999987777666554444433211 2222333334
Q ss_pred HHHHHHHhhccce
Q 002884 599 TIKMDKLNSAGFA 611 (870)
Q Consensus 599 a~~~~~L~daGfa 611 (870)
.+....+..+||.
T Consensus 280 ~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 280 AEMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHHcCCc
Confidence 4455555566665
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=85.17 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhhhcCC----CCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCC-CcE
Q 002884 450 HYIDFIQQAVPKIAWGK----YTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGI-PAI 516 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~----~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl-~~~ 516 (870)
.|.+.|...+....... +...|||||||+|.+....++ .+|++|+-++......+ +.....+. ..+
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V 243 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTE
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeE
Confidence 34444555555443322 256899999999987643322 38999999997654443 33234444 344
Q ss_pred EEEcC-cccCCCCCCceeEEEeccc-ccccccChHHHHHHHHhhcCCCcEEE
Q 002884 517 SAVMG-TKRLQFPRNVFDLVHCARC-RVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 517 ~~v~d-ae~LPfpd~SFDlV~Ss~~-alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.++.+ .+.+..|. .+|+|+|=.. .+...+-...+|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 44444 56666554 7999999421 12222333678999999999999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.1e-05 Score=82.90 Aligned_cols=97 Identities=27% Similarity=0.380 Sum_probs=65.1
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh--Cccceeccccccc--cCCC-Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER--GLFGIYHDWCESF--STYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR--Glig~~h~wce~f--~tyP-rtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++..|++.- -. -+|+-+|.. ..+..+.++ +....++-.+..+ .+++ .+||+||+..+|..
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc
Confidence 569999999999999887641 00 134444443 566666666 2211122121111 1243 79999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. +...+|-++-|+|+|||++++.+
T Consensus 100 ~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 65 46779999999999999999875
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=77.06 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCC---CCceeE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFP---RNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfp---d~SFDl 534 (870)
..++.+||+.|.|+|+++.+|+.. +|+..|+.......|+.++.. .|+. ++.+. .+...-.|. +..||.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccE
Confidence 357999999999999999998863 899999999988888865544 5554 44443 344333342 367999
Q ss_pred EEecccccccccChHHHHHHHHhhc-CCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVL-RPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVL-KPGG~Lv~S~~ 570 (870)
|+.-. +++..++..+.++| ||||+|++-.+
T Consensus 117 vfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 98742 57889999999999 99999998743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.7e-06 Score=89.46 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=78.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH----HHhhCccceeccccccccC--CCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI----IYERGLFGIYHDWCESFST--YPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~----i~eRGlig~~h~wce~f~t--yPrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++.+|++.+. .|+-+|.. ..+.. +.+.|+ . ++..+..+.. .+..||+|.+..+|.+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3699999999999999998874 55666654 44443 344566 2 2222222222 2689999999888765
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe---cCh-----------hhHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR---DEP-----------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir---d~~-----------~~~~~~~~~~~~l~W~~~~~ 845 (870)
.. +-.+..+|-+|.|+|+|||++++- +.. -...+++.+++. |++...
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 235778999999999999996553 111 114778888876 888654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.1e-05 Score=85.95 Aligned_cols=99 Identities=8% Similarity=0.167 Sum_probs=65.8
Q ss_pred cccccccccchhHHhhhcC---CCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCC-Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKD---LQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~---~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyP-rtyDllHa~~lf 793 (870)
..|||+|||+|.++.+|+. .+- ..|+-+|.. .+|..+.+| |+..-+.-.|..+..+| ..||+|-+..+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4599999999999888765 222 145556654 666666554 33222222333334444 458998877666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.+... .....+|-+|.|+|+|||.|++.|.
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 65432 3456799999999999999999974
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.6e-06 Score=92.07 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=66.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC--ccceeccccccccCCCCccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG--LFGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG--lig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
..|||+|||.|+++..|++. ++ .|+-++.. .++..+.+|. +. ++-.+..+...+.+||+|.+.++|.+...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCe--EEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 46999999999999999864 54 44555543 6777766653 31 22122223334678999999888865432
Q ss_pred CcChhhHHHhhhhcccCCcEEEEec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-.+..+|-++.|+|+|||++++.+
T Consensus 244 -~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 -KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 345679999999999999999964
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=79.01 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+.+ +|+|+|+++.|+..+...+. .........+...+++++-.+|.|++|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 35679999999999999999875 89999999999887764332 112334444556677654336889887
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=77.55 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..+...+.. .+.+. ...+...++++ .||.|+++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch--hceEEEEcC
Confidence 35789999999999999999875 899999999988877643322 23333 34455666665 489999984
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=76.50 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=76.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hC-----ccceeccccccccCCCCccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RG-----LFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RG-----lig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
-..|||+|||.|.++..|...+. +|+-++.. ..+....+ .| +.-+.+|+.+.+. +..||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEECC
Confidence 34699999999999999988743 55555543 44444422 13 3334446655432 24899986554
Q ss_pred cccccc------------------CCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLK------------------NRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~------------------~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~ 844 (870)
-|.... .+..+..++.++.|+|+|||++++-... .....+...+....|++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 432210 1223557899999999999998876432 3357788889988998754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=77.34 Aligned_cols=128 Identities=19% Similarity=0.314 Sum_probs=78.6
Q ss_pred CccccccHHHHHHHHHHHhhhhhcCC--CCCEEEEECCCCc----hhHHHHhc---------CCEEEEeCChhhHHHHHH
Q 002884 441 GTQFIHGALHYIDFIQQAVPKIAWGK--YTRVSLDVGCGVA----SFGGYLFE---------RDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 441 gt~F~~gA~~Yid~L~~~Lp~i~~g~--~~~~VLDIGCGtG----~~a~~La~---------r~VtgVDiSp~ml~~A~v 505 (870)
-|.|.+...++..+-...+|.+.... ..-+|+-+||++| ++|..|.+ -+|+|.|++...+..|..
T Consensus 68 ~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 68 VTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 34555666665555444455433222 3668999999999 34444332 179999999998887753
Q ss_pred HH----HHHcCCC-------------c-----------E-EEEcCcccCCCCCCceeEEEecccccccccCh-HHHHHHH
Q 002884 506 QF----ALERGIP-------------A-----------I-SAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLEL 555 (870)
Q Consensus 506 q~----A~ergl~-------------~-----------~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei 555 (870)
-. ...++++ . + +...+...-++..+.||+|+|.++++-+.... ..++..+
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f 227 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRF 227 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHH
Confidence 21 1112221 0 0 01111111121345699999987755554333 7899999
Q ss_pred HhhcCCCcEEEEE
Q 002884 556 NRVLRPGGYFVWS 568 (870)
Q Consensus 556 ~RVLKPGG~Lv~S 568 (870)
+..|+|||+|++.
T Consensus 228 ~~~L~~gG~LflG 240 (268)
T COG1352 228 ADSLKPGGLLFLG 240 (268)
T ss_pred HHHhCCCCEEEEc
Confidence 9999999999996
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.6e-05 Score=85.74 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=61.6
Q ss_pred cccccccccchhHHhhhcCC-C-eEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCC-Cccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q-VWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYP-RSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~-vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyP-rtyDllHa~~lfS~~~ 797 (870)
..|||+|||.|.+++.|.+. + .--.+|+-+|.. ..+..+.+|.- +.+.+.-.+.+ +|+ .+||+|.+ +|+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~--~~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIR--IYA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEE--ecC---
Confidence 56999999999999998754 1 101256667765 77777766631 22233222333 454 79999986 332
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
...+-|+.|+|+|||+||+..+.
T Consensus 161 -----~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 -----PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -----CCCHHHHHhhccCCCEEEEEeCC
Confidence 22468999999999999998653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.8e-05 Score=87.66 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=61.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH---HHh----hCccceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI---IYE----RGLFGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~---i~e----RGlig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+.|||+|||.|.++.+|+..+.- .|+-+|.. ..+.. +.. .+.+.+...=.+.++ .+.+||+|-|.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-ELYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-CCCCcCEEEEcchhh
Confidence 67999999999999988877541 34444433 23221 111 112222221123322 235899999988876
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+. -++..+|.|+-|+|||||.|||.
T Consensus 200 H~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 54 46778999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.3e-05 Score=84.96 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI 546 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~ 546 (870)
.+..+||+|||.|.....-....++|.|++...+.. ++..|.. ...+.++..+|+.+.+||.+++... +||..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~-----ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiav-ihhls 117 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGG-----AKRSGGD-NVCRADALKLPFREESFDAALSIAV-IHHLS 117 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhccc-----cccCCCc-eeehhhhhcCCCCCCccccchhhhh-hhhhh
Confidence 477999999999965543333468999988764433 3333332 4567778899999999999999754 55542
Q ss_pred ---ChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 547 ---DGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 547 ---D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
....++.|+.|+|||||..++.+...
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 23789999999999999977764333
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=77.27 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccc------cCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESF------STYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f------~tyP-rtyDllHa~ 790 (870)
.+|||+|||.|+++.+|..+ .|+..=+.|.. . -.|+--+..|..+.. ..+| .+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 46999999999998877643 25554444321 0 123322223554321 1244 679997765
Q ss_pred ccc------cc--ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEEe-----ecCCCceEEEE
Q 002884 791 HLF------SQ--LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILFA-----FSKDQEGVLSA 856 (870)
Q Consensus 791 ~lf------S~--~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~~-----~~~~~e~iL~~ 856 (870)
+.. +. ....+.+..+|.++.|+|||||.+++- .....+..+-..++..=|.+.+. ...+-|++|||
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVA 185 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEE
Confidence 421 11 111123467999999999999999994 22222222222222222445443 12246899998
Q ss_pred E
Q 002884 857 Q 857 (870)
Q Consensus 857 ~ 857 (870)
.
T Consensus 186 ~ 186 (188)
T TIGR00438 186 K 186 (188)
T ss_pred e
Confidence 5
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=75.87 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCcee---EEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFD---LVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFD---lV~Ss 538 (870)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..+...... .........+...++++ .|| +|+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 35789999999999999999875 899999999988776533321 11223334455666665 466 88876
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.4e-05 Score=81.36 Aligned_cols=120 Identities=20% Similarity=0.299 Sum_probs=84.9
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
|-|.|.+|--....+..+|.-.- -.++....++||+|+|.|.++..++.. .|.+.++|..|..+-+ ..+..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~-----kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLK-----KKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHh-----hcCCc
Confidence 66778888777766666554221 234556789999999999999999886 8899999888765432 33332
Q ss_pred cEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCC-CcEEEEE
Q 002884 515 AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRP-GGYFVWS 568 (870)
Q Consensus 515 ~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKP-GG~Lv~S 568 (870)
. .... ..--.+-.||+|.|-. ++.-|.++..+|..|+.+|+| .|.++++
T Consensus 157 V-l~~~---ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 V-LTEI---EWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-eeeh---hhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 1 1111 1111234599999964 477778899999999999999 8988876
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=81.67 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
..+|||++||+|.++..++.. .|+++|+++..+..++. .+...++....+.. +...+......||+|+...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP--- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC---
Confidence 468999999999999888642 69999999998887764 44445565443333 3333211145699999863
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ -.+..+|..+.+.++|||+++++.+.
T Consensus 134 -~-Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 -F-GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred -C-CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 2 23467788878889999999999543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00043 Score=75.88 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred HHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEEEEc-Cc-ccCC
Q 002884 456 QQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAISAVM-GT-KRLQ 526 (870)
Q Consensus 456 ~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~~v~-da-e~LP 526 (870)
...++.+..+.+ ++||-||.|.|..++.+++. +++.+||++..+..++.-+..-.+ -+....+. |. .-+.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR 144 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH
Confidence 334444445554 79999999999999999886 899999999877665533322221 12223333 32 3333
Q ss_pred CCCCceeEEEecccccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-....||+|++- +.=+ ..+ ..+++.++|+|+++|+++..
T Consensus 145 ~~~~~fDvIi~D-~tdp--~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 145 DCEEKFDVIIVD-STDP--VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred hCCCcCCEEEEc-CCCC--CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 223489999985 2111 122 68999999999999999987
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.3e-05 Score=71.00 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=48.5
Q ss_pred ccccccchhHHhhhcCC--C--eEEEEeccCCCCCChhHHHhhCcc--ceecc-ccccccCCC-Cccchhhhhccccccc
Q 002884 726 MDMRAVYGGFAAALKDL--Q--VWVMNVVNVNSPDTLPIIYERGLF--GIYHD-WCESFSTYP-RSYDLLHADHLFSQLK 797 (870)
Q Consensus 726 mDm~ag~GgfaaaL~~~--~--vwvmNvvp~~~~~tl~~i~eRGli--g~~h~-wce~f~tyP-rtyDllHa~~lfS~~~ 797 (870)
||+|||.|.+..+|.+. . |..+-+.|.--......+.+.+.. ..+.- --+.+...+ .+||+|.+.++|.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999876 2 344444433322112234443422 12222 222333333 599999999999988
Q ss_pred CCcChhhHHHhhhhcccCCcEE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKL 819 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~ 819 (870)
=++..+|..+.|+|||||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 36778999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.5e-05 Score=81.56 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccc------cCC-CCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESF------STY-PRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f------~ty-PrtyDllHa~ 790 (870)
..|||+|||+|+|+..|++. .|..+-+.|.. .+ .|+.-+..|+...- ..+ +.+||+|-++
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---~~-----~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---PI-----VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---CC-----CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 46999999999999888665 23333333311 11 23222222333210 123 3689998885
Q ss_pred cccccccCC--------cChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe-ecCCCceEEEE
Q 002884 791 HLFSQLKNR--------CKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA-FSKDQEGVLSA 856 (870)
Q Consensus 791 ~lfS~~~~r--------c~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~ 856 (870)
......... +.+..+|-++-|+|+|||.|++-.- .+++..++..+...++---.. .....|.++||
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 432211111 1135689999999999999999532 222233322222222211000 12247899998
Q ss_pred Ee
Q 002884 857 QK 858 (870)
Q Consensus 857 ~K 858 (870)
..
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 74
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00059 Score=70.41 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=67.4
Q ss_pred EEEEECCCCchhHHHHh----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccccccc
Q 002884 470 VSLDVGCGVASFGGYLF----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++||||+|.|.-+..|+ +.+++.+|....-...-. ..+.+.+++++..+.+ .+. +.....||+|++.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 89999999997554443 458999999887554332 4556678887666665 455 55678899999963 2
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.....++.-+.+.|++||.+++.
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEE
Confidence 35678888899999999999986
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00041 Score=77.77 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcEEEEc-Cc-ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAISAVM-GT-KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~~~v~-da-e~LPfpd~SFDlV~S 537 (870)
..++||.||+|.|..++.+++. +|+++|+++.++..++..+.... .-+.+.++. |. .-+....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4679999999999999887763 79999999998877764433211 113333333 33 333444678999998
Q ss_pred cccccccc------cChHHHHH-HHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWH------IDGGKLLL-ELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~------~D~~~vL~-Ei~RVLKPGG~Lv~S 568 (870)
-. .-++. -....++. .+.++|+|||+|++.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 52 12221 11246777 899999999999876
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=1.5e-05 Score=84.11 Aligned_cols=123 Identities=21% Similarity=0.304 Sum_probs=93.9
Q ss_pred cccccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccce-ecccccccc--CCCCccchhhhhcc
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGI-YHDWCESFS--TYPRSYDLLHADHL 792 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~-~h~wce~f~--tyPrtyDllHa~~l 792 (870)
.+-+.+|-+||+|||+|-+|-+|+++-- -+.=+|-+ |+|.+++|+|++-. ||.=-..|. .=++-||||-|..|
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3445589999999999999999987611 12233555 99999999998754 444444576 45799999999999
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh------hh----------HHHHHHHHHcCCceEEEe
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------SA----------VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------~~----------~~~~~~~~~~l~W~~~~~ 845 (870)
|..+. .++.++.=+.+.|.|||.|+|+-.. .+ -..|+..+.+-..+++..
T Consensus 198 l~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 198 LPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred HHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 99876 4888999999999999999999321 01 367788888888887644
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00048 Score=70.37 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=70.2
Q ss_pred HHHHhhhhhcCCCCCEEEEECCCCchhHHHHh--cC--C---------EEEEeCChhhHHHHHHHHHHHcCCCc--EEEE
Q 002884 455 IQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF--ER--D---------VLTMSFAPKDEHDAQIQFALERGIPA--ISAV 519 (870)
Q Consensus 455 L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La--~r--~---------VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v 519 (870)
|+..+..+..-.++..|||--||+|.+....+ .. . ++|.|+++.++..|.. .+...++.. .+..
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEEEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceEEEe
Confidence 33333333333567899999999998774332 22 3 7799999999988874 455556543 3344
Q ss_pred cCcccCCCCCCceeEEEecccccccccCh----------HHHHHHHHhhcCCCcEEEEE
Q 002884 520 MGTKRLQFPRNVFDLVHCARCRVPWHIDG----------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 520 ~dae~LPfpd~SFDlV~Ss~~alhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+...+|+.++++|+|+++. +|-... ..++.++.|+|++..+++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 46788998889999999973 554221 36789999999995555555
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00039 Score=76.60 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|++. .|+++|+++.++..+...++.....+...++. |....++ ..||+|+++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEec
Confidence 45789999999999999999875 79999999999888775444322123344444 4444444 368999987
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.1e-05 Score=77.46 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=70.4
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCcc---ceec-cccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLF---GIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGli---g~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
.|||||||.|.|+.+++..----..|+-+|.. ..+..+.+ -|+. -+++ |..+.+..++..||+|.+.+
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~--- 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG--- 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---
Confidence 59999999999988764320001134444543 44444332 2432 2222 33332223345788876532
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
....+..+|-++.|+|+|||.+++. -..+.+.++...++.+.++..+.
T Consensus 120 ---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 120 ---GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred ---CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 1235678999999999999999983 34556678888888777766543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=77.33 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCc--ccCCC------CCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGT--KRLQF------PRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~da--e~LPf------pd~SF 532 (870)
..++||+||+++|.-+..|+.. +|+++|+++.....|+..+. ..|+ ..+.++.+. +.|+- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4679999999999877777642 79999999988777764444 3454 334444442 33331 13689
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+.-. +......++..+.+.|+|||++++-...
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9999752 3344578888889999999999986443
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=3.8e-05 Score=81.06 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=66.5
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
..|||+|||+|-++.+|.+. +. +|+-+|-. ++|....+++ ..++..++.+ +|| .+||+|.+...+- .-
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l-p~~d~sfD~v~~~~~l~---~~ 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEAL-PFRDKSFDVVMSSFALH---AS 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhC-CCCCCCEEEEEecChhh---cc
Confidence 47999999999999999877 33 67778865 8888887774 3456666775 454 8999999865543 33
Q ss_pred cChhhHHHhhhhcccCCc
Q 002884 800 CKLVPVMAEVDRIVRPGG 817 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG 817 (870)
-+++.+|-||.|||||.+
T Consensus 124 ~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCHHHHHHHHHHHhcCce
Confidence 467889999999999954
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.9e-05 Score=77.76 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=63.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc----cceec-cccccccCCCCccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL----FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl----ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
-.+|||+|||.|.++.+|....-=.-.++-+|.. ..+..+.++.- +-+++ +..+ .+.-+.+||+|++.+++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence 3579999999999999887552100123333432 45555555431 23333 3332 2322368999998766643
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. ..+..+|.++.++|||||++++.+
T Consensus 119 ~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 V---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred c---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 357789999999999999999864
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.1e-05 Score=82.14 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Ccc--ceec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLF--GIYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gli--g~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|..+..+... +. -..|+-+|.. ..+..+.++ |+- -+++ ++ +.+ ++| .+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcCc
Confidence 47999999998765443322 11 0123334433 556555543 331 1222 22 333 344 79999999877
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+.. +...+|-|+-|+|||||.|+|.+
T Consensus 156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 75432 45679999999999999999975
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.7e-05 Score=78.27 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=74.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCcc--ceec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLF--GIYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|.|+.+|+.. +- .+|+-+|.. ..+..+ ...|+- -+++ |+- ..++ ..||+|.++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF---EPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh---ccCcCCceeEEEECCC
Confidence 36999999999999999875 22 144444432 333333 234552 2333 332 3444 78999988644
Q ss_pred ccccc------CCcC-----------------hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 793 FSQLK------NRCK-----------------LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 793 fS~~~------~rc~-----------------~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
|.... ..+. ...++-++-|+|+|||++++.........++.++....|...
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 43211 1010 135788999999999999998766667788888888888653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=77.16 Aligned_cols=102 Identities=24% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCc--ccC-CCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGT--KRL-QFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~da--e~L-Pfpd~SFDlV~S 537 (870)
+.+.+|||...|-|.++...+++ .|+.++.+|.-+..|.++ ...+++. ++..+.++ +-. .|+|.+||+|+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccC-CCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 45889999999999998877765 789999999866544321 1111211 23344442 222 488999999986
Q ss_pred ccccccccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-.-.+...- ....+.+|++|+|||||.++--
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 322222212 2368899999999999999854
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00051 Score=80.20 Aligned_cols=104 Identities=15% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCC-CCCCceeEEE--
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQ-FPRNVFDLVH-- 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LP-fpd~SFDlV~-- 536 (870)
.++.+|||++||.|.=+..|+.. .|+++|+++..+...+ +.+.+.|+.++... .+...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 57889999999999766555542 7999999998776655 45555687764443 3434332 2245799999
Q ss_pred --ecccc-c--------ccccCh--------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 --CARCR-V--------PWHIDG--------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 --Ss~~a-l--------hw~~D~--------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+... + .|.... ..+|..+.++|||||+|+.|+.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 44211 1 121110 3678899999999999999943
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00042 Score=75.45 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-----------------
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG----------------- 512 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg----------------- 512 (870)
++.|...++.........+||--|||.|+++-.++.+ .+.|.++|-.|+-... +.....
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccC
Confidence 3445555543222344679999999999999999987 8999999999975433 332210
Q ss_pred ------------CC------------cEEEEcCc-ccCCCC---CCceeEEEecccccccccChHHHHHHHHhhcCCCcE
Q 002884 513 ------------IP------------AISAVMGT-KRLQFP---RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGY 564 (870)
Q Consensus 513 ------------l~------------~~~~v~da-e~LPfp---d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~ 564 (870)
+| ......++ ..+..+ .++||+|++.+ .+.-..+.-.+|..|.++|||||+
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCE
Confidence 00 01111111 111112 26899999864 244445568999999999999998
Q ss_pred EEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecC
Q 002884 565 FVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPT 617 (870)
Q Consensus 565 Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf 617 (870)
++=.+|..|..-+-. .-.+..-.+.|..+ ...+...||.+.....
T Consensus 198 WIN~GPLlyh~~~~~-----~~~~~sveLs~eEi---~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 198 WINFGPLLYHFEPMS-----IPNEMSVELSLEEI---KELIEKLGFEIEKEES 242 (270)
T ss_pred EEecCCccccCCCCC-----CCCCcccCCCHHHH---HHHHHHCCCEEEEEEE
Confidence 886655555433210 00111122344434 4455668999887544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00059 Score=67.14 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCch-hHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVAS-FGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~-~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
++.+|||||||.|. ++..|.+. .|+++|+++..+ +.+++.+.. ..+.|...-.+. -..+|+|++.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~--~v~dDlf~p~~~~y~~a~liysirp-- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLN--AFVDDLFNPNLEIYKNAKLIYSIRP-- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCe--EEECcCCCCCHHHHhcCCEEEEeCC--
Confidence 46789999999995 88888875 999999999844 344455542 233333222221 245999999753
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
..+....+.++.+.+ |.-|++. +...+
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~-~l~~e 113 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIK-PLSGE 113 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEE-cCCCC
Confidence 234455666666544 4556665 54444
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=3.5e-05 Score=75.56 Aligned_cols=96 Identities=18% Similarity=0.392 Sum_probs=67.8
Q ss_pred cccccccccchhHHhhhcC-C--CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-CCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKD-L--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-YPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~-~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-yPrtyDllHa~ 790 (870)
-+|||+|||+|-++-.|++ . +. +++-+|-. ..+..+.. .|+ +-+++ |+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4699999999999999983 2 33 24444544 55555555 465 34554 4544 332 56899999998
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
++|- .-.....+|.+|-|+|+|||.+|+++..
T Consensus 81 ~~l~---~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLH---HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGG---GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchh---hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8883 2245667899999999999999999876
|
... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=66.41 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-c-EEEEcCc-ccCC-C-CC-CceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-A-ISAVMGT-KRLQ-F-PR-NVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~-~~~v~da-e~LP-f-pd-~SFDlV~S 537 (870)
.+.+|||++||+|.++..++.+ .|+++|.++..+..++.. +...++. . .+...+. ..+. + .. ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N-~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKEN-LALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999988875 799999999888776643 3334443 2 2333343 2222 1 12 24788887
Q ss_pred cccccccccC-hHHHHHHH--HhhcCCCcEEEEE
Q 002884 538 ARCRVPWHID-GGKLLLEL--NRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D-~~~vL~Ei--~RVLKPGG~Lv~S 568 (870)
-. +|... ...++..+ ..+|+++|++++.
T Consensus 128 DP---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 128 DP---PFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred Cc---CCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 53 22222 24444444 3479999999987
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0013 Score=71.49 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH---HcCCCcEEEEcCcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL---ERGIPAISAVMGTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~---ergl~~~~~v~dae~L 525 (870)
|.+.|.. ++... ....++||=||.|.|..++.+++. +|+-+||++.++..++.-+.. ...-|....+....
T Consensus 58 YHEmLvH-ppl~~-h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~-- 133 (262)
T PRK00536 58 ESELLAH-MGGCT-KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL-- 133 (262)
T ss_pred HHHHHHH-HHHhh-CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--
Confidence 4444433 33333 345789999999999999999987 799999999887666531111 11122332332111
Q ss_pred CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 526 QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.-..+.||+|++-. + ....+++.++|+|+|||+|+...
T Consensus 134 ~~~~~~fDVIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 134 DLDIKKYDLIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hccCCcCCEEEEcC-C-----CChHHHHHHHHhcCCCcEEEECC
Confidence 11236899999852 1 34688899999999999999864
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.5e-05 Score=82.59 Aligned_cols=135 Identities=19% Similarity=0.308 Sum_probs=81.8
Q ss_pred cccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh--Cccceecccc-ccccC-CC-Cccchhhh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER--GLFGIYHDWC-ESFST-YP-RSYDLLHA 789 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR--Glig~~h~wc-e~f~t-yP-rtyDllHa 789 (870)
+.-.+|++++++|||-|-|.+.|+.+ .+.++-++|. -|..+.+| |+..+ .|- -.++. +| .+|||||.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V--~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHV--EWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSE--EEEES-TTT---SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCe--EEEECcCCCCCCCCCeeEEEE
Confidence 45578999999999999999999988 4555555443 44444443 22211 121 12222 35 89999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh----------HHHHHHHHHcCCceEEEe---ecCCCceEEEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------VTEVENFLKSLHWEILFA---FSKDQEGVLSA 856 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------~~~~~~~~~~l~W~~~~~---~~~~~e~iL~~ 856 (870)
..||-.+.+.-.+..++-.|...|+|||.+|+-.-.+. -+.|..++...-=++.-. .....|.-|++
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLA 192 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEee
Confidence 99999887656777899999999999999999753221 245555555544444322 22234555554
Q ss_pred E
Q 002884 857 Q 857 (870)
Q Consensus 857 ~ 857 (870)
+
T Consensus 193 ~ 193 (201)
T PF05401_consen 193 R 193 (201)
T ss_dssp E
T ss_pred e
Confidence 3
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=6.5e-05 Score=78.52 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=65.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccceec--cccccccCCCCccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYH--DWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h--~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
.|||+|||.|.++..|.+.+. +++-++.. ..+..+.++ |+...++ ++.+-....+.+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 599999999999999987753 45555544 444444443 4322222 3432222234789999998887765
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. +...+|.++.|+|+|||.+++...
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 456789999999999999999853
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=75.28 Aligned_cols=118 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCcc--ceecccccccc--CCC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLF--GIYHDWCESFS--TYP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h~wce~f~--tyP-rtyDllHa~~ 791 (870)
+.|||+|||.|.|+.+|+.. +- .||+-+|.. ..+..+ ...|+- -+++.=...+. .+| .++|+|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999999865 22 255555543 444333 344553 22332222222 245 5899887632
Q ss_pred cc---c--cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCC-ceE
Q 002884 792 LF---S--QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLH-WEI 842 (870)
Q Consensus 792 lf---S--~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~-W~~ 842 (870)
-. . +.+.|+....+|-++-|+|||||.|++. |.......+...+.... |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 11 1 1224566678999999999999999886 66666666666665543 544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=75.01 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=62.2
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC-CC--------------C
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ-FP--------------R 529 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP-fp--------------d 529 (870)
.+|||++||+|.++..|+.. .|+++|+++.++..++ +.+...++.++.++.+ ... ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988874 8999999999998877 4455566655544443 322 21 10 2
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..||+|+...- ...-...++..+. +|+++++++-
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEe
Confidence 25899987531 1111134444444 4799999984
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00018 Score=76.85 Aligned_cols=132 Identities=18% Similarity=0.277 Sum_probs=79.7
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh---Cc---cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER---GL---FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR---Gl---ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+... - ..|+-+|.. ..+..+.+. ++ +-+++ |+.+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 369999999999999997652 2 134444443 444444432 22 22333 4433321 3789998775322
Q ss_pred cccc------C--------------C---cChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE-EEe-ecC
Q 002884 794 SQLK------N--------------R---CKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI-LFA-FSK 848 (870)
Q Consensus 794 S~~~------~--------------r---c~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~-~~~-~~~ 848 (870)
.... . . =.+..++.++-++|+|||++++--.......++.++....|.. ... +-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 1100 0 0 0124677888899999999999654444567888888777753 221 444
Q ss_pred CCceEEEEEe
Q 002884 849 DQEGVLSAQK 858 (870)
Q Consensus 849 ~~e~iL~~~K 858 (870)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6788888765
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=70.47 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEEEEc-
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAISAVM- 520 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~~v~- 520 (870)
..|.+.|... +... ....++||=||.|.|..++.|.+. .|+++|+++..+..++.-+..... -+....+.
T Consensus 60 ~~y~e~l~h~-~~~~-~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 60 FIYHEMLVHP-PLLL-HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp HHHHHHHHHH-HHHH-SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred HHHHHHHhhh-Hhhc-CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 4555555433 3222 235789999999999999999875 799999999988777654443322 13344443
Q ss_pred Cc-ccCCCCCC-ceeEEEecccccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GT-KRLQFPRN-VFDLVHCARCRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 da-e~LPfpd~-SFDlV~Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|. .-+--..+ .||+|+.-.. -+.... ...+++.+.++|+|||+|++..
T Consensus 138 Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 138 DGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp THHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 33 12222223 8999998532 122111 2689999999999999999874
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=8.3e-05 Score=76.93 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=64.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceecccccccc-CCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFS-TYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~-tyPrtyDllHa~~lfS 794 (870)
.+|||+|||.|.++..|.+.+. .++-++.. ..+..+..+ |+ +.+.+.-.+.+. ..|.+||+|.+.++|.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4699999999999998876643 23334433 344444332 33 333332222222 2357999999988776
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
... ++..+|-++.|+|+|||.+++...
T Consensus 124 ~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 543 567799999999999999998753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=81.17 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=77.5
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC---ccceeccccccccCCCCccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG---LFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG---lig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
..|||+|||+|.++..|.+. +- .+|+-+|.. .++..+.++. -+.+++.-.+.++.-+.+||+|-+.++|....
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999998887653 21 134445543 5666665542 13344433344333347999998877776544
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecChh-----------------hHHHHHHHHHcCCceEEE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEPS-----------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~~-----------------~~~~~~~~~~~l~W~~~~ 844 (870)
+...+|-|+-|+|||||.++|.+... ..+++..++++..++...
T Consensus 193 ---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 193 ---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 34579999999999999998865321 236677788888887643
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=80.43 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=78.9
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccceeccccccccCCCCccchhhhhccccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.|||+|||+|.++++|.++ +- ..|+-+|.. ..|..+ ...|+-+.++ ++..+...+..||+|-++-.|-...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999999876 31 123333433 233222 2334443332 3333444568999999977663211
Q ss_pred --CCcChhhHHHhhhhcccCCcEEEEecC--hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEeC
Q 002884 798 --NRCKLVPVMAEVDRIVRPGGKLIVRDE--PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 798 --~rc~~~~vl~EmDRILRPgG~~iird~--~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~ 859 (870)
..-....++.++-|.|+|||.++|-.+ ..+...++..+... ++ .....+-+|+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~--la~~~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EV--LAQTGRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EE--EEeCCCEEEEEEEcc
Confidence 112346789999999999999988643 33345555555442 22 234567788888763
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00048 Score=71.18 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=48.6
Q ss_pred CCCEEEEECCCCchhH--HHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFG--GYLFE-RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a--~~La~-r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++|||+|||||.++ ..++. ..|+++|+++..+..+. +.+.+.+....+.+.+.... ...||.|+.|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECC
Confidence 5778999999999754 55555 49999999999888776 34444444444555554444 35588888874
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00036 Score=74.01 Aligned_cols=129 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----Hhh-Cccceeccccccc--cCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YER-GLFGIYHDWCESF--STYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eR-Glig~~h~wce~f--~tyPrtyDllHa~~lfS 794 (870)
.|||+|||.|++..+|.+. +- -.|.-+|.. .+|..+ .++ ++..+..|-.... ...+.+||+|-++
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~--g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d---- 148 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEE--GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD---- 148 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCC--CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC----
Confidence 4999999999999999875 10 023333433 333322 222 3334444544321 1234668875321
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe------cC----hhhHHHHHHHHHcCCceEEEe-ec---CCCceEEEEEeC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR------DE----PSAVTEVENFLKSLHWEILFA-FS---KDQEGVLSAQKG 859 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir------d~----~~~~~~~~~~~~~l~W~~~~~-~~---~~~e~iL~~~K~ 859 (870)
....=....+|.|+-|+|||||+++|. |. ......+...+.....+.... +. ....-++|++|+
T Consensus 149 -~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 149 -VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred -CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 110001123578999999999999993 32 122233445666555555432 11 224567777663
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.34 E-value=7.1e-05 Score=77.64 Aligned_cols=115 Identities=20% Similarity=0.329 Sum_probs=77.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-----CChhHHHhhCccceeccccccccCC--CCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFSTY--PRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~ty--PrtyDllHa~~lfS~ 795 (870)
-.|||+|||-|--|.+|+++|. .|..+|.. ....++-.+||- ++.++..+.++ |..||+|.+..+|-+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEecc
Confidence 3599999999999999999998 44555543 233345567775 55445444444 689999998877766
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe---cC--------hhh---HHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR---DE--------PSA---VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir---d~--------~~~---~~~~~~~~~~l~W~~~~~ 845 (870)
++ |-.+..|+..|-.-|+|||+++|- +. ... ..+|+..+. .|++...
T Consensus 107 L~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred CC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 65 346778999999999999998883 11 112 266777777 5998653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=8e-05 Score=80.49 Aligned_cols=99 Identities=12% Similarity=0.218 Sum_probs=68.1
Q ss_pred cccccccccchh----HHhhhcCCC----eEEEEeccCCCC-CChhHHHhhCccc-------------------------
Q 002884 723 RNVMDMRAVYGG----FAAALKDLQ----VWVMNVVNVNSP-DTLPIIYERGLFG------------------------- 768 (870)
Q Consensus 723 RnvmDm~ag~Gg----faaaL~~~~----vwvmNvvp~~~~-~tl~~i~eRGlig------------------------- 768 (870)
-.|+|+|||+|- .|..|.+.. -|-..|+-+|-. ..|..+. +|+++
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 469999999994 566665431 245578888866 6665554 33321
Q ss_pred ----------eeccccccccCC-CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 769 ----------IYHDWCESFSTY-PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 769 ----------~~h~wce~f~ty-PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
..||.++. .+ +..||+|.|.++|-.... -....+|-++.|+|+|||+++|-...
T Consensus 180 ~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 180 KPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred ChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 13455542 23 489999999888876532 23457999999999999999997644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00015 Score=62.78 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=61.0
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hhC---ccceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ERG---LFGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eRG---lig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|+|+|||.|+++..+...+. ..+.-+|.. +.+..+. ..+ .+-+++ ++......-+..||++.+++.|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999999987332 233333433 2222222 122 234444 343332223578999999888875
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. .-....+|..+.++|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 124567889999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00011 Score=87.98 Aligned_cols=102 Identities=15% Similarity=0.326 Sum_probs=66.6
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccC-C-CCccchhhhhc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFST-Y-PRSYDLLHADH 791 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~t-y-PrtyDllHa~~ 791 (870)
.-..|||+|||+|.++.+|... +- .+|+-+|.+ .++..+.++ |. +-+++.=+..++. + |.+||+|.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 3457999999999998888753 21 355556655 566665554 21 2223333344442 4 48999998765
Q ss_pred ccccc----c------CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQL----K------NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~----~------~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
++-.+ . ..-.+..+|.++-|+|||||.+||.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 54321 1 112456899999999999999999974
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00034 Score=76.18 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=83.7
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhc-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADH- 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~- 791 (870)
..|||+|||.|.+|.+|... +- ..|+-+|.. ..+.++.+ .|+ +-+++ ||++.+. +..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 35999999999999999864 22 144555543 45544443 244 33443 6776542 13789876641
Q ss_pred ------------ccccccCCc---------ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHH-cCCceE-EEe-ec
Q 002884 792 ------------LFSQLKNRC---------KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLK-SLHWEI-LFA-FS 847 (870)
Q Consensus 792 ------------lfS~~~~rc---------~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~-~l~W~~-~~~-~~ 847 (870)
++.+....+ .+..++-++-++|+|||++++--....-..+..++. ...|.. .+. |-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 111110000 244788899999999999999876666677777776 466753 222 44
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
...++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 567889888753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00025 Score=78.41 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=77.2
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|||.|.++.+|... +- .+|+.+|.. ..+.++.. .|+ +-+++ |+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999999765 32 345556653 55544433 355 44444 4544332 368999887521
Q ss_pred ccc------------ccCC---------c-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCC
Q 002884 793 FSQ------------LKNR---------C-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQ 850 (870)
Q Consensus 793 fS~------------~~~r---------c-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~ 850 (870)
+.. +... . ....++-++-++|+|||++++--... ...+..++....+.. ...+...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~ 288 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGG 288 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCC
Confidence 100 0000 0 12468899999999999999964333 445777776554322 2234445
Q ss_pred ceEEEEEe
Q 002884 851 EGVLSAQK 858 (870)
Q Consensus 851 e~iL~~~K 858 (870)
.+++++.+
T Consensus 289 ~~~~~~~~ 296 (307)
T PRK11805 289 DGVFLLTR 296 (307)
T ss_pred ceEEEEEH
Confidence 56665554
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00052 Score=75.47 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=60.8
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhh-CccceeccccccccCC---CCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYER-GLFGIYHDWCESFSTY---PRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eR-Glig~~h~wce~f~ty---PrtyDllHa~~lfS 794 (870)
+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++..| +++.+..|.+... .| +.++|+|-++-.
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeCC--
Confidence 5999999999999999876 2565544432222355555454 6777777765431 23 257888755331
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..=....+++++.|+|||||+|+|.
T Consensus 212 ---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 ---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1112335677999999999999994
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00026 Score=77.31 Aligned_cols=115 Identities=22% Similarity=0.320 Sum_probs=72.1
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP-rtyDllHa~~ 791 (870)
..|||+|||+|.++.+|+.. +- ..|+-+|.. ..+.++.+ .|+ +-+++ |+.+. +| .+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEECC
Confidence 46999999999999999865 21 144555554 55554443 365 33444 44443 34 5899987752
Q ss_pred cccc------c----c-----------CCc-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 792 LFSQ------L----K-----------NRC-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 792 lfS~------~----~-----------~rc-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
=+.. . . ... .+..++.++-++|+|||++++--.... ..++.++....|...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 1110 0 0 001 124688899999999999998754433 688888887665443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=68.80 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=72.0
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc--C--CEEEEeCChhhHHHHHHHHHH
Q 002884 434 IITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE--R--DVLTMSFAPKDEHDAQIQFAL 509 (870)
Q Consensus 434 ~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~--r--~VtgVDiSp~ml~~A~vq~A~ 509 (870)
.+.+.-...+|..+-..-..+|...+ .++.+|||+.||.|.|+..++. . .|+++|++|..+.... +.++
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~-~Ni~ 146 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLV------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK-ENIR 146 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH-HHHH
T ss_pred EEEEccceEEEccccHHHHHHHHhcC------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH-HHHH
Confidence 34444455566665544444454443 3588999999999999988887 3 7999999998776655 4444
Q ss_pred HcCCCc-EEEE-cCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 510 ERGIPA-ISAV-MGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 510 ergl~~-~~~v-~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..++.. +..+ .|...++. ...||-|+++. + .....+|..+.+++|+||++.+
T Consensus 147 lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l---p--~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLP-EGKFDRVIMNL---P--ESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp HTT-TTTEEEEES-GGG----TT-EEEEEE-----T--SSGGGGHHHHHHHEEEEEEEEE
T ss_pred HcCCCCeEEEEcCCHHHhcC-ccccCEEEECC---h--HHHHHHHHHHHHHhcCCcEEEC
Confidence 445543 3333 34444433 78899999873 2 2334688889999999998753
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=73.45 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=61.6
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC-------C---C-----C
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ-------F---P-----R 529 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP-------f---p-----d 529 (870)
.+|||+|||+|.++..|+.. .|+|+|+++.++..|. +.+...++.++.++.+ ... ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999988874 8999999999998887 4455566655555443 222 11 1 0 1
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..||+|+...-.- .-...++..+ ++|+++++++-
T Consensus 278 ~~~d~v~lDPPR~---G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPPRA---GLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHH---HcCCcEEEEEc
Confidence 2379988753100 0013444444 34899999983
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0092 Score=65.88 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=77.8
Q ss_pred ccccccccchhHHhhhcCCC---eEEEEeccCCCC-CChhHHHhhCccc--eec-cccccccCCCCccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-DTLPIIYERGLFG--IYH-DWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-~tl~~i~eRGlig--~~h-~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
+|+|+|||||=.|+.|++.. -++|-=+...+= ....-+.+-|+-+ +++ +.++.-. ..||+|-++==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE---GKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc---ccccEEEeCCCccCC
Confidence 79999999999999998773 244421111110 1111123344444 444 3555433 499997665555543
Q ss_pred cCCc--ChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 797 KNRC--KLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 797 ~~rc--~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
+.-- -...++.+--+-|++||-++|=- -..+..+|++++. ++...-.+.+-+||-++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEec
Confidence 3210 11257888899999999887653 4555677777766 455555566677877776
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00021 Score=73.99 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=60.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|....-=.-.++-+|.. ..+..+.++ |+ +-+++.=.+.+..=+.+||+|.+.+++-
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 359999999999998886542000133334432 444444333 12 3333322222221137899998865543
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
...++..+|.++.++|+|||.+++.+
T Consensus 133 ---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 133 ---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 33567889999999999999999864
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00043 Score=72.51 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCcc-ceec-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLF-GIYH-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGli-g~~h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-.|||+|||.|.++..|...+. -.|+-+|.. ..+..+.+ .|+- -+++ |+.+. .+ ..||+|.++--|.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccCCCeeEEEECCCCC
Confidence 3599999999999998887653 244444443 44443332 3442 2222 45442 34 6899998864332
Q ss_pred ccc------------------CCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEEE
Q 002884 795 QLK------------------NRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~------------------~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~~ 844 (870)
... ..+.+..++.++-|+|+|||.+++-. ....+..+...+++-.|.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 110 01224567888999999999999842 222344555556666665544
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00055 Score=78.60 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=84.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
+|||+|||.|.++.+|... +- .+|+-+|.. ..+..+.+ .|+ +-+++ ||.+...+-...||+|-++-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999888753 32 244455543 55554443 243 33444 565542111247999876442210
Q ss_pred c---------------------cCCc-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe--ecCCCc
Q 002884 796 L---------------------KNRC-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA--FSKDQE 851 (870)
Q Consensus 796 ~---------------------~~rc-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~--~~~~~e 851 (870)
. .+.. -+..++-+.-+.|+|||++++--..+-...++.++....|..... |-.+.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 0 0000 123677778899999999998766666788999998888865332 556789
Q ss_pred eEEEEEe
Q 002884 852 GVLSAQK 858 (870)
Q Consensus 852 ~iL~~~K 858 (870)
+++++++
T Consensus 412 R~v~~~~ 418 (423)
T PRK14966 412 RVTLGKY 418 (423)
T ss_pred EEEEEEE
Confidence 9999875
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0003 Score=80.07 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-C----ChhHHHhhCccc--eec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-D----TLPIIYERGLFG--IYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~----tl~~i~eRGlig--~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..+||+|||.|.|..+|+.. |= .|++-++-. . .+.-+..+||-. +++ |.-+-+..+| .++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln-- 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH-- 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--
Confidence 35999999999999999866 21 155555543 2 234455667633 233 3222123455 799999873
Q ss_pred ccc-c-cCC---cChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC-CceE
Q 002884 793 FSQ-L-KNR---CKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 793 fS~-~-~~r---c~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l-~W~~ 842 (870)
|.. | +.| =-....|-|+-|+|+|||.+.|+ |...+...+...+... +++.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 221 12257999999999999998886 6666666665555544 5544
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=72.28 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEecccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~Ss~~alh 543 (870)
...++|+|.|.|..+..+... +|-++++....+..+....+ .| +..+.++ ..+|- + |+|++-.++.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g---V~~v~gdmfq~~P~--~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG---VEHVAGDMFQDTPK--G--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC---cceecccccccCCC--c--CeEEEEeeccc
Confidence 478999999999999888775 78999988776655443332 33 2333332 34543 2 59999888888
Q ss_pred cccC-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHID-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|.++ ...+|+.++..|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 8754 48999999999999999998854
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=66.79 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----CCCCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----QFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----Pfpd~SFDlV 535 (870)
..+.-||++|.|||.++..++.+ .+++++.++.....-. +.-....++..++..+ .+.+.-||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-----~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-----QLYPGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-----HhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence 35679999999999999999876 7899999997554332 1211122223333222 2567789999
Q ss_pred EecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|..-++.+.... -.+|..+...|++||.|+--
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 9964334333333 57889999999999999854
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00023 Score=74.81 Aligned_cols=99 Identities=12% Similarity=0.251 Sum_probs=67.0
Q ss_pred cccccccccccchhHHhhhcC----CCeEEEEeccCCCC-CChhHHHhhCc---cceeccccccccCCCCccchhhhhcc
Q 002884 721 NVRNVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSP-DTLPIIYERGL---FGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
.-..|||+|||+|.++.+|.+ .+. -.+|+-+|.. ..+..+.++.. +.+...-++.++.-+.+||+|-+.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 345799999999999888864 221 2367778865 78877776631 11222233444444589999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+..+. .+..+|-||-|+|| |.++|.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8765432 24569999999999 5566665
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00019 Score=78.63 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=63.7
Q ss_pred cccccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhH----HHhhCccceecccccccc--CCCCccchhhhhc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPI----IYERGLFGIYHDWCESFS--TYPRSYDLLHADH 791 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~----i~eRGlig~~h~wce~f~--tyPrtyDllHa~~ 791 (870)
.+..+.|||+|||.|.++.++.+. |- .+++-+|.+..+.. +.+.|+-.-++-.+..|. ++|. +|++-..+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 355678999999999999988766 21 12333344444444 344576543433333332 3554 78865545
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1234689999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0002 Score=74.85 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=52.6
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHh----hCc--cceeccccccccCCC--Cccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYE----RGL--FGIYHDWCESFSTYP--RSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~e----RGl--ig~~h~wce~f~tyP--rtyDllHa 789 (870)
..|||+|||+|.+++.|... .|+.+-+.| ..+.++.+ -|+ +-+.+ +..+..++ ..||+|++
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYV 151 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEE
Confidence 46999999999999887654 344444333 33333322 244 22222 22333343 68999988
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+.+ ..+..++-+.|||||.+|+-
T Consensus 152 ~~~~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 152 TAAG---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCc---------ccchHHHHHhhCCCcEEEEE
Confidence 5433 34555677899999999985
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00026 Score=77.40 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=74.0
Q ss_pred cccccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC--CChhHHHhhCccceeccccccccCCCCccchhhhhc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP--DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~--~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+++.-+.. |||+|||-|+++.++++. +|-|+-|.-..+. .--..|.++||-.-++..=.....++..||-|-+.|
T Consensus 68 l~L~~G~~--lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvg 145 (283)
T COG2230 68 LGLKPGMT--LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVG 145 (283)
T ss_pred cCCCCCCE--EEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehh
Confidence 34444544 999999999999999877 7844433322221 333457889998433332222266665699999999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+|-+... -...+.+-=+.++|+|||.+++-
T Consensus 146 mfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 146 MFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 9987654 46778999999999999999876
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=6.7e-05 Score=68.53 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=61.8
Q ss_pred cccccccchhHHhhhcCCC--eEEEEeccCCCC-CChhHHHhhC----c-cceeccccccccCCCCccchhhhhcc-ccc
Q 002884 725 VMDMRAVYGGFAAALKDLQ--VWVMNVVNVNSP-DTLPIIYERG----L-FGIYHDWCESFSTYPRSYDLLHADHL-FSQ 795 (870)
Q Consensus 725 vmDm~ag~GgfaaaL~~~~--vwvmNvvp~~~~-~tl~~i~eRG----l-ig~~h~wce~f~tyPrtyDllHa~~l-fS~ 795 (870)
|||+|||.|.+..+|.+.- ---..+.-+|.. ..|..+.++. + +-+++.=++.++..-.+||+|=+.++ |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998651 001356667755 7888888777 2 23344333444433479999999766 555
Q ss_pred ccCCcChhhHHHhhhhcccCCc
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGG 817 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG 817 (870)
-..=.+..+|-++-|+|||||
T Consensus 81 -~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCHHHHHHHHHHHHHHhCCCC
Confidence 344567789999999999998
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=68.00 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF 527 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf 527 (870)
...++.|.............-++|||||=.......-... +|+.||+.+.. . -+..+|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~-----------~----~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH-----------P----GILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCC-----------C----CceeeccccCCC
Confidence 3445555554432221223369999998755433222222 79999998741 1 224455444454
Q ss_pred ---CCCceeEEEecccccccccCh---HHHHHHHHhhcCCCcE-----EEEE
Q 002884 528 ---PRNVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGY-----FVWS 568 (870)
Q Consensus 528 ---pd~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~-----Lv~S 568 (870)
+++.||+|+|+. ++.|.+++ ...+..+++.|+|+|. |++.
T Consensus 98 p~~~~e~FdvIs~SL-VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 98 PKNESEKFDVISLSL-VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred CCCcccceeEEEEEE-EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 367999999985 58888876 7899999999999999 7776
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00021 Score=66.27 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=56.1
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccc--eec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFG--IYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig--~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|... +- ..|+.+|.. ..+..+ ...|+-. ++. +.-..+...+.+||.|-+.+.+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 46999999999999999765 22 244555543 333332 2234322 221 2111112224689987654322
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. .+..++-++-|+|+|||+||+.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2457999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0034 Score=72.74 Aligned_cols=97 Identities=25% Similarity=0.373 Sum_probs=71.8
Q ss_pred EEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccccccc
Q 002884 470 VSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
++|-+|||.-.+...|.+. .|+.+|+|+..+.......+. ..+.. ....+...+.|++++||+|+--..+-+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 9999999999988888764 899999999877766655442 22333 34456788999999999999753321211
Q ss_pred cC---------hHHHHHHHHhhcCCCcEEEEE
Q 002884 546 ID---------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~D---------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ ....+.++.|+|+|||.++..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 22 235689999999999998866
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0078 Score=67.21 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcCc-----ccCCC--CC
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMGT-----KRLQF--PR 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~da-----e~LPf--pd 529 (870)
++..|+|+|||.|.=++.|++ ..++++|+|..++..+..+... ...|.+. .++++ ..+|- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccCCCeEEEEEEecHHHHHhhccccccc
Confidence 456899999999975544433 1589999999999888765542 2233222 23332 12322 22
Q ss_pred CceeEEEecccccccccCh--HHHHHHHHh-hcCCCcEEEEEECCCcCchhHHHHHHHh
Q 002884 530 NVFDLVHCARCRVPWHIDG--GKLLLELNR-VLRPGGYFVWSATPVYQKLGEDVEIWNA 585 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~--~~vL~Ei~R-VLKPGG~Lv~S~~p~~~tL~El~~~w~~ 585 (870)
....+|+.-.+.+...... ..+|+.+.+ +|+|||.|++. ......-..+..++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG-~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG-LDGCKDPDKVLRAYND 212 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe-cCCCCCHHHHHHHhcC
Confidence 3467777644445543333 578999999 99999999997 3333333333344443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00024 Score=73.69 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=54.3
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCcc---ceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLF---GIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGli---g~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||+|.+++.|.+. .|+.+-+.|.-.......+...|+. -+++ |..+.+. -..+||+|++.+.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccCc
Confidence 35999999999999887643 2443333322111111223344653 3444 3333322 23689999986543
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .+.-++-|+|+|||.+|+-.
T Consensus 153 ~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 S---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred c---------hhhHHHHHhcCcCcEEEEEE
Confidence 2 23457889999999999853
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=64.23 Aligned_cols=90 Identities=29% Similarity=0.395 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC----------c-ccCCCCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG----------T-KRLQFPRN 530 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d----------a-e~LPfpd~ 530 (870)
...+||||||++|.|+..+..+ .|+|+|+.+... ++....+.+ . ..++-...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~------------~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP------------LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------------TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc------------ccceeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999875 699999988511 111111111 0 11111236
Q ss_pred ceeEEEecccccccc----cCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 531 VFDLVHCARCRVPWH----IDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 531 SFDlV~Ss~~alhw~----~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.||+|+|-. +.... .+. ...|.-+...|+|||.|++-.
T Consensus 91 ~~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred Ccceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 899999953 12221 111 234555567899999999873
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00051 Score=69.17 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=65.1
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH---Hh-hCc--cceec-cccccccCCCCccchhhhhcc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII---YE-RGL--FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i---~e-RGl--ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
-.+|||+|||+|-.|.+|+.. +-+- |+-+|.. ..+..+ .+ -|+ +-+++ |+.+.+. +..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 456999999999999999876 2222 3333332 333332 22 333 22333 5655544 589999877644
Q ss_pred cccccC--CcChhhHHHhhhhcccCCcEEE--EecChhhHHHHHHHHH
Q 002884 793 FSQLKN--RCKLVPVMAEVDRIVRPGGKLI--VRDEPSAVTEVENFLK 836 (870)
Q Consensus 793 fS~~~~--rc~~~~vl~EmDRILRPgG~~i--ird~~~~~~~~~~~~~ 836 (870)
|..... ...+..++.+.-|+|+|||.++ +.........++.++.
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332221 1345688999999999999874 4444444444555444
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00031 Score=71.87 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=58.7
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCCc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~rc 800 (870)
+|||+|||.|.++.+|.+. ++ ++.-+|.. ..+..+..+|+--+..+..+.+..++ ++||+|-+.+.|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 5999999999999999754 32 22334433 56666667775433345544444565 7999999988886654
Q ss_pred ChhhHHHhhhhcccC
Q 002884 801 KLVPVMAEVDRIVRP 815 (870)
Q Consensus 801 ~~~~vl~EmDRILRP 815 (870)
+...+|.||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 366688888777664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00025 Score=73.88 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred cccccccccchhHHhhhcCC--C---eEEEEeccCCCCCChhH----HHhhCc--cceec-cccccccCCCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--Q---VWVMNVVNVNSPDTLPI----IYERGL--FGIYH-DWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~---vwvmNvvp~~~~~tl~~----i~eRGl--ig~~h-~wce~f~tyPrtyDllHa~ 790 (870)
..|||+|||+|.+++.|.+. . |+.+-+.| ..+.. +.+.|+ +-+++ |..+.+.. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 35999999999999998765 1 43333222 33333 333454 22333 33332211 2689999874
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+. ...+.-++-|.|+|||.+|+-
T Consensus 154 ~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CC---------cccccHHHHHhcCcCcEEEEE
Confidence 32 234556778899999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0065 Score=70.45 Aligned_cols=120 Identities=21% Similarity=0.217 Sum_probs=80.6
Q ss_pred cccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 443 QFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 443 ~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
.|..........|...+.......+..+|||+=||.|.|+..|+++ +|+|+++++.++..|+ +.|+..++.+..++.
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~ 347 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIA 347 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEe
Confidence 4554444444444444444333445789999999999999999975 9999999999998887 567777887766665
Q ss_pred C-cccCCC---CCCceeEEEecccccccccChH-HHHHHHHhhcCCCcEEEEE
Q 002884 521 G-TKRLQF---PRNVFDLVHCARCRVPWHIDGG-KLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 521 d-ae~LPf---pd~SFDlV~Ss~~alhw~~D~~-~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++.+.. ....||.|+...- -.-.. .+++.+ ..++|-.++++|
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 5 343332 2357899987420 01113 444444 456888899998
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=71.13 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.|||+|||+|.++...+. ++|.+++.|. |...|+.-.+.. .+. .+..+.+ .+.+.+| +..|+|++-...
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASN-NLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcC-CccceEEEccCccccccCc-hhccEEEeccch
Confidence 578999999999976544443 3899999876 666666433332 333 3344444 4666665 459999985422
Q ss_pred cccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
....+.. -.....++|.|+|.|.++-+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2211211 22333456999999998843
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0073 Score=63.46 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccC--------CCCCCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRL--------QFPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~L--------Pfpd~S 531 (870)
.++.+|+||||..|+++..+++. .|+|+|+-|.... +.+.++. +...- -+....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------------~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------------PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------------CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46889999999999999988875 4999999886321 2223332 21111 133445
Q ss_pred eeEEEecc---cccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCAR---CRVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~---~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+|+|-. ..-+|..|. ..++.-+..+|+|||.|++..
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 79999732 112333332 345666778999999999873
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00068 Score=72.87 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=77.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCccceec-cccccccC-CCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGLFGIYH-DWCESFST-YPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h-~wce~f~t-yPrtyDllHa~~lfS 794 (870)
..|||+|||+|.++.+|... +- ..|+-+|.. ..+..+.+ -|+ -+++ |+.+.+.. +...||+|=++=-|.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888653 21 133444443 44433322 232 3333 56554321 235699976653322
Q ss_pred c-------------ccCCcC----------hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCC
Q 002884 795 Q-------------LKNRCK----------LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKD 849 (870)
Q Consensus 795 ~-------------~~~rc~----------~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~ 849 (870)
. +..++. +..++..+.++|+|||++++--..+-...+..+++...|+..+..+++
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 001111 347888889999999999987666667788888888888887765554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0024 Score=69.94 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred cCCCCCEEEEECCCCchhHHHHhc-----------CCEEEEeCChhhHHHHHHHHHHHcCCCc---EEEEcCcccCC-CC
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFE-----------RDVLTMSFAPKDEHDAQIQFALERGIPA---ISAVMGTKRLQ-FP 528 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~-----------r~VtgVDiSp~ml~~A~vq~A~ergl~~---~~~v~dae~LP-fp 528 (870)
...++.+|||..||+|.|...+.. ..++|+|+++.....|...... +++.. .....+.-..+ +.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEES-TTTSHSCT
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccccccccccccccc
Confidence 344567899999999998766543 2899999999988777765543 33322 13333332222 22
Q ss_pred -CCceeEEEecccccc--ccc-----------------C-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 529 -RNVFDLVHCARCRVP--WHI-----------------D-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 529 -d~SFDlV~Ss~~alh--w~~-----------------D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
...||+|+++.-... |.. . ...++..+.+.|++||.+++..+
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 578999999732111 110 0 02577889999999999877643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0051 Score=63.35 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCc-ccCC---CCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGT-KRLQ---FPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~da-e~LP---fpd~SFDlV~S 537 (870)
.+.+|||+-||+|.++...+.+ .|+.||.++..+...+ +.+..-+... .....+. ..++ .....||+|+.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999877765 8999999998766554 3344444433 3344443 2222 24688999998
Q ss_pred cccccccccCh--HHHHHHHH--hhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--GKLLLELN--RVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~--RVLKPGG~Lv~S 568 (870)
-. +|.... ..+|..+. ..|+++|++++.
T Consensus 121 DP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DP---PYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp -----STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CC---CcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 64 454443 56777776 799999999997
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00051 Score=71.60 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=66.7
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCc-cceec-cccccccCCC-Cccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGL-FGIYH-DWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h-~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
...|||+|||+|-+..+|... +- ..++-+|.. ..+..+.++.- +.+++ +..+ ++| ++||+|-+.++|.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD---PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC---CCCCCCEEEEEECChhhhC
Confidence 356999999999999999875 32 256666654 67777766421 23333 3333 554 899999999999876
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .-.+..+|-||.|++ +|++||.+
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4 235678999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0007 Score=70.22 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=63.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
-.+|||+|||.|.|+.+|.+.+. .|.-+|.. +.+..+.++ |+..-++-....+...+.+||+|.+.++|.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 35799999999999999987764 25555544 555555543 33112222222244445889999998887554
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. -.+..++-++-|++++++.+.+..
T Consensus 141 ~~-~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 141 PQ-EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CH-HHHHHHHHHHHhhcCCeEEEEECC
Confidence 32 346678889999887666655543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.013 Score=60.44 Aligned_cols=114 Identities=19% Similarity=0.348 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ 526 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP 526 (870)
+|.|......+. +.....+|+||||+|..+..|+.. -..++|++|..+.... .-|+..+........+. .-.
T Consensus 29 lDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl-~TA~~n~~~~~~V~tdl-~~~ 105 (209)
T KOG3191|consen 29 LDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL-ETARCNRVHIDVVRTDL-LSG 105 (209)
T ss_pred HHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH-HHHHhcCCccceeehhH-Hhh
Confidence 444544443322 233678999999999998888875 4788999998654433 55555554433333332 111
Q ss_pred CCCCceeEEEecccccc--------------cc--cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 527 FPRNVFDLVHCARCRVP--------------WH--IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alh--------------w~--~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..++.|+++.+.-.++ |. .+. ..+|..+..+|.|.|+|++.
T Consensus 106 l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 106 LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 22388999888743222 21 111 25667777888999999987
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00053 Score=71.12 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=69.1
Q ss_pred ccccccccchhHHhhhcC-CCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCCc
Q 002884 724 NVMDMRAVYGGFAAALKD-LQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~-~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~rc 800 (870)
.|||+|||.|.+-++|.+ ++|-+ .-++.. ..+.....|||.-+-+|+-+.+..|| .+||.|=.+..+-...
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~--- 89 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR--- 89 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh---
Confidence 499999999999999987 46633 333433 56778899999977779999999998 9999976544444333
Q ss_pred ChhhHHHhhhhcccCCcEEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iir 822 (870)
....||.||=|| |...|++
T Consensus 90 ~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEE
Confidence 366899999666 7788888
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0088 Score=65.26 Aligned_cols=96 Identities=20% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcC--cccCCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMG--TKRLQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~d--ae~LPfpd~SFDlV~ 536 (870)
-...+|||+|||+|...-.+.+ ..++++|.|+.|+..++. .... ...... .... ...+++.. .|+|+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~~--~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRA-GPNNRNAEWRRVLYRDFLPFPP--DDLVI 107 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhc-ccccccchhhhhhhcccccCCC--CcEEE
Confidence 3567999999999965443332 289999999999877653 3322 211111 1111 12233433 39999
Q ss_pred ecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++++.. ..+ ...++..+.+.+.+ +|++.
T Consensus 108 ~s~~L~E-L~~~~r~~lv~~LW~~~~~--~LVlV 138 (274)
T PF09243_consen 108 ASYVLNE-LPSAARAELVRSLWNKTAP--VLVLV 138 (274)
T ss_pred Eehhhhc-CCchHHHHHHHHHHHhccC--cEEEE
Confidence 9876433 333 24566666666655 77776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00086 Score=68.75 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=60.9
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||+|.++..|+.. +- -.|+-+|.. ..+..+.+ .|+ +-+++ |..+.+...+..+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 45999999999998887642 11 123334432 34433332 354 22332 22222211122345544321
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLH 839 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~ 839 (870)
...+..+|-++.|+|+|||+|++-... +.+..+...++.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 235678999999999999999988643 33455666666553
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=58.07 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc-----C---CEEEEeCChhhHHHHHHHHHHHcC--C-CcEEEE
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE-----R---DVLTMSFAPKDEHDAQIQFALERG--I-PAISAV 519 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~-----r---~VtgVDiSp~ml~~A~vq~A~erg--l-~~~~~v 519 (870)
+..+|...+.......+...|+|+|||.|.++..|+. . .|+++|..+..+..+.. .+...+ . ....+.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~ 87 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK-RAQKLGSDLEKRLSFI 87 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH-HHHHhcchhhccchhh
Confidence 3344444433322235678999999999999988877 3 89999999987766653 444333 1 111111
Q ss_pred cCc-ccCCCCCCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEEECCCcCc
Q 002884 520 MGT-KRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQK 575 (870)
Q Consensus 520 ~da-e~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~t 575 (870)
.+. ...+ .....++++. +|-+.++ ..+|+-+.+ |+-.+++..+--|..
T Consensus 88 ~~~~~~~~-~~~~~~~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~ 137 (141)
T PF13679_consen 88 QGDIADES-SSDPPDILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHK 137 (141)
T ss_pred ccchhhhc-ccCCCeEEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccch
Confidence 111 1111 1444566654 6777777 445554444 666666543544443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00058 Score=72.84 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=82.6
Q ss_pred HHHHhhcccccceeeeccccccccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceecccc--
Q 002884 698 RDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWC-- 774 (870)
Q Consensus 698 ~dye~W~~~V~~TY~~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wc-- 774 (870)
++|..-|-.+|..+...+.--....|.+.|+|||.| +|+..+.--. =+|+.+|-. .+|. +...+..-.||.--
T Consensus 10 ~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~G-qa~~~iae~~--k~VIatD~s~~mL~-~a~k~~~~~y~~t~~~ 85 (261)
T KOG3010|consen 10 ADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNG-QAARGIAEHY--KEVIATDVSEAMLK-VAKKHPPVTYCHTPST 85 (261)
T ss_pred HHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCC-cchHHHHHhh--hhheeecCCHHHHH-HhhcCCCcccccCCcc
Confidence 455544445554322222212234568999999999 6665543322 477888866 7787 44555555666433
Q ss_pred ------ccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcE----EEEecChhhHHHHHHHHHcCCce
Q 002884 775 ------ESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGK----LIVRDEPSAVTEVENFLKSLHWE 841 (870)
Q Consensus 775 ------e~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~----~iird~~~~~~~~~~~~~~l~W~ 841 (870)
+.|.-=+.+-|||-|.--| +=|+++..+-++.|||||.|- +..+|..-+.-++-.+..+++|+
T Consensus 86 ms~~~~v~L~g~e~SVDlI~~Aqa~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 86 MSSDEMVDLLGGEESVDLITAAQAV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred ccccccccccCCCcceeeehhhhhH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 3333337999996551111 227899999999999999992 22344444455666667777775
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00092 Score=69.54 Aligned_cols=96 Identities=8% Similarity=0.131 Sum_probs=66.5
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceeccccccccCCCCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
-..|||+|||.|.++.+|++.+. .|+-+|.. ..+..+.+|. + +...+ ..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV---NDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChhhCCCCcCEEEEhhHH
Confidence 45799999999999999988754 45556654 6777766653 1 22222 2223334889998776666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.++. ...+..++.++.|+++|++++.+...
T Consensus 130 ~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 130 IHYP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HhCC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5442 24567789999999999988887644
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0053 Score=64.53 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc----C--CEEEEeCChhhHHHHHHHHHHHc---------CCCcEEEEcCcccCC-CCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----R--DVLTMSFAPKDEHDAQIQFALER---------GIPAISAVMGTKRLQ-FPR 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r--~VtgVDiSp~ml~~A~vq~A~er---------gl~~~~~v~dae~LP-fpd 529 (870)
.++.++||+|.|+|.++..++. . .++|||.-+..+..+....-..- ......++.++.+.- -+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 3688999999999987765552 2 44999998887766553322211 011233444443333 346
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..||.|||.. ....+..++...|+|||.+++-
T Consensus 161 a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 7899999962 3346677888899999999985
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0062 Score=69.40 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=68.6
Q ss_pred CEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCccc-CCCCCCceeEEEecccc
Q 002884 469 RVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKR-LQFPRNVFDLVHCARCR 541 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~-LPfpd~SFDlV~Ss~~a 541 (870)
-+|||+.||+|.++..++.+ .|+++|+++..+..++. .+...++...... .++.. +......||+|+.-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999999887753 69999999998776664 3444455433333 33322 222235799998753
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ ..+..++..+.+.+++||+|+++.+.
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEecc
Confidence 2 23468999999999999999999543
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=67.14 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHHh-cC--CEEEEeCChhhHHHHHHHH---------------HHHcCC------------Cc
Q 002884 466 KYTRVSLDVGCGVASFGGYLF-ER--DVLTMSFAPKDEHDAQIQF---------------ALERGI------------PA 515 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La-~r--~VtgVDiSp~ml~~A~vq~---------------A~ergl------------~~ 515 (870)
.++.++||||||.-..-..-+ +. +|+..|+++......+.-. +...|- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999854322112 22 7999999887654322110 010110 01
Q ss_pred E--EEEcCc-ccCCCCC-----CceeEEEecccccccccCh---HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH
Q 002884 516 I--SAVMGT-KRLQFPR-----NVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN 584 (870)
Q Consensus 516 ~--~~v~da-e~LPfpd-----~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~ 584 (870)
+ +..++. ..-|+.. ..||+|++.+|+---+.+. ..+++.+.++|||||.|++.+.... +.... .
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~-t~Y~v----G 209 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS-TYYMV----G 209 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS--SEEEE----T
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc-eeEEE----C
Confidence 1 223343 3333433 3599999988743334454 6889999999999999999853211 10000 0
Q ss_pred hhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 585 AMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 585 ~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
. ..+.. ++-. .....+.|..+|+.|..
T Consensus 210 ~-~~F~~-l~l~-ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 210 G-HKFPC-LPLN-EEFVREALEEAGFDIED 236 (256)
T ss_dssp T-EEEE----B--HHHHHHHHHHTTEEEEE
T ss_pred C-Eeccc-ccCC-HHHHHHHHHHcCCEEEe
Confidence 0 00000 1111 12346788899998877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.007 Score=69.30 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhc--C-CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcC-c-ccCC---CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--R-DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMG-T-KRLQ---FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--r-~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~d-a-e~LP---fpd~SFDlV~ 536 (870)
.+++|||+=|=||.|+.+.+. + .|++||+|...+..|+.++.. .|++ .+.++.+ . .-|. -....||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 378999999999998877665 3 999999999999998855444 4543 2334443 2 2222 2345899999
Q ss_pred ecccccc------cc--cChHHHHHHHHhhcCCCcEEEEEECCCcCchhH
Q 002884 537 CARCRVP------WH--IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578 (870)
Q Consensus 537 Ss~~alh------w~--~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E 578 (870)
.-.-++- |. .+...++..+.++|+|||.+++++....-....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 8422111 11 233678899999999999999985444333333
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0026 Score=70.29 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=76.6
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCccceeccccccccCCC--Cccchhhhhccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLFGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
.-+||||+|||.|-+|-|.++.+. --|+-+|.. -.+.+..| -|+--+.|.=+-.....| +.||+|-|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 358999999999999999988875 224444432 23333222 233323343333334555 5999988721 1
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecChhh-HHHHHHHHHcCCceEEEeecCCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA-VTEVENFLKSLHWEILFAFSKDQEGVLS 855 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~-~~~~~~~~~~l~W~~~~~~~~~~e~iL~ 855 (870)
.. -+..+.-++-|.|||||++|++.=... .+.+...+.+-.|.+..+... .|.+.+
T Consensus 239 A~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-~eW~~i 295 (300)
T COG2264 239 AE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-EEWVAI 295 (300)
T ss_pred HH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-CCEEEE
Confidence 10 122455577899999999999963322 466667777778888654333 344443
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=62.96 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCchhHHHH----hcC-CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYL----FER-DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~L----a~r-~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-a-e~LP-----fpd~SFD 533 (870)
..+++||||.=||.-+..+ .+. +|+++|+.+.....+. ++.+..|..- +.++.+ + +.|+ ...++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 4679999998888543333 333 9999999998766663 4555555542 233333 1 2221 3578999
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+||.- +|-......+.++.++||+||++++-
T Consensus 152 faFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 99874 46555578999999999999999986
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=65.31 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred ccccccccccccchhHHhhhcCCC-----eEEEEeccCCCCCChhHHHhhCccc---eeccccccccCCCCccchhhhhc
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDLQ-----VWVMNVVNVNSPDTLPIIYERGLFG---IYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~~-----vwvmNvvp~~~~~tl~~i~eRGlig---~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+.-.+|||+||+.|||..+|.++. |+-+-+.|.........+ +|=+- ......+.+..-.+.||||.||+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecccc
Confidence 346889999999999999999887 333444444222111111 22110 00111222221125899999999
Q ss_pred ccccccCC---c--Chh---hHHHhhhhcccCCcEEEEe-----cChhhHHHHHHHHHcCCceEEEe-ecCCCceEEEEE
Q 002884 792 LFSQLKNR---C--KLV---PVMAEVDRIVRPGGKLIVR-----DEPSAVTEVENFLKSLHWEILFA-FSKDQEGVLSAQ 857 (870)
Q Consensus 792 lfS~~~~r---c--~~~---~vl~EmDRILRPgG~~iir-----d~~~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~~ 857 (870)
-+.....+ . .+. ..|.=+-+.|||||.+|+- +...++..++.....+++---.. ..+..|..|||+
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLVCR 179 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEEEc
Confidence 66543221 0 111 2222334669999988875 22355666666666544432111 234578899886
Q ss_pred e
Q 002884 858 K 858 (870)
Q Consensus 858 K 858 (870)
+
T Consensus 180 ~ 180 (181)
T PF01728_consen 180 G 180 (181)
T ss_dssp E
T ss_pred C
Confidence 4
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=66.15 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred hhcCCCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCC--CC-CCc
Q 002884 462 IAWGKYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQ--FP-RNV 531 (870)
Q Consensus 462 i~~g~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LP--fp-d~S 531 (870)
.+...++.+|||+.++.|.=+..|+.. .|+++|+++.-+.... ....+.|+.+ .....++..++ .+ .+.
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCc
Confidence 444567899999999999655555442 3699999998665544 4556667775 34444554443 22 235
Q ss_pred eeEEEe----c-ccccc------cccCh----------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 532 FDLVHC----A-RCRVP------WHIDG----------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 532 FDlV~S----s-~~alh------w~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
||.|+. + ..++. |.... ..+|..+.++|||||.|+.++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 999985 2 11122 22111 36789999999999999999543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00085 Score=71.64 Aligned_cols=94 Identities=16% Similarity=0.318 Sum_probs=71.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cc----cccccCCC-Cccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DW----CESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~w----ce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
-|||+|||-|.++..|+..|. +|.-+|.. ..+.++..+.+.+-+. +| -|.+ ... .+||+|-|..|+-++
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl-~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDL-ASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHH-HhcCCCccEEEEhhHHHcc
Confidence 399999999999999999994 88899987 7888887666543333 22 1110 111 589998887777766
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. +...+|....+.|||||.++++..
T Consensus 138 ~---dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 P---DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEecc
Confidence 5 466799999999999999999953
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=61.73 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.2
Q ss_pred chhhhhcCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCC-CCEEEEECCCCchhHHHHh----cCCEEEEeCChhh
Q 002884 425 QNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKY-TRVSLDVGCGVASFGGYLF----ERDVLTMSFAPKD 499 (870)
Q Consensus 425 qnWv~~~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~-~~~VLDIGCGtG~~a~~La----~r~VtgVDiSp~m 499 (870)
..-...|+..++. +.......-|..++.+.+........ ..+++|||.|.|.-+..|+ +.+|+-+|....-
T Consensus 28 ~~lL~~wN~~~NL----t~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk 103 (215)
T COG0357 28 VELLLKWNKAYNL----TAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK 103 (215)
T ss_pred HHHHHHhhHhcCC----CCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence 3334455555554 33334444555565555443322223 5899999999997666554 3489999988774
Q ss_pred HHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 500 EHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 500 l~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
+..-. ....+-+++++..+.+ ++.+.-...-||+|.|.. + .....++.=+...||+||.|++
T Consensus 104 ~~FL~-~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA--v---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 104 IAFLR-EVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA--V---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHH-HHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--c---cchHHHHHHHHHhcccCCcchh
Confidence 43322 3455678887776665 455542111199999963 2 3566777778899999999865
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0032 Score=62.85 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCchhH--HHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFG--GYLFE-RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a--~~La~-r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+.+++|+|||.|-+. ..+.+ ..|+|+||.|..+..+. +.+.+..+...+..++...+-+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 5789999999999655 33333 38999999999887665 5666666666566666666666678999999874
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.014 Score=63.44 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCC-ceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN-VFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~-SFDlV~Ss~~al 542 (870)
.++..||+||+|.|.++..|+++ .|+++++++.++..-...++ ..........|+....|+.- .++.|++| +
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN---l 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN---L 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc---C
Confidence 45789999999999999999986 89999999987655443222 11122334445666677653 58999987 5
Q ss_pred ccccChHHHHHHHH
Q 002884 543 PWHIDGGKLLLELN 556 (870)
Q Consensus 543 hw~~D~~~vL~Ei~ 556 (870)
+|..-.+-++.=+.
T Consensus 104 PY~Isspii~kll~ 117 (259)
T COG0030 104 PYNISSPILFKLLE 117 (259)
T ss_pred CCcccHHHHHHHHh
Confidence 66544444443333
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0011 Score=73.28 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=74.0
Q ss_pred cccccccccchhHHhhhcCCC---eEEEEeccCCCCCChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~ 798 (870)
..|||+|||+|-.|-+-+..+ |...=+-|.--..+..-+..-|+-.-+.. + .....+ ..||||-|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-EecccccccCCEEEECCCHHH---
Confidence 479999999997765555554 44443333322344444555565543322 1 123333 89999887332221
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEEeecCCCceEEEEEeC
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~ 859 (870)
+..++-.+.++|+|||++|++.=. .-...|...++. .|.+.....++.=..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 234666789999999999999533 224666777777 888765444443446666664
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0045 Score=67.79 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=81.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccc---eeccccccccCCCCccchhhhh----
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFG---IYHDWCESFSTYPRSYDLLHAD---- 790 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig---~~h~wce~f~tyPrtyDllHa~---- 790 (870)
+|+|||||.|..|.+|+.. +. .+|+-+|-. .-|.++ ..-||.- +..||.+... .+||+|-++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCC
Confidence 7999999999999999876 33 456666644 444332 2335432 2225655543 356664221
Q ss_pred ------------------cccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCc-eEEEe--ecCC
Q 002884 791 ------------------HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW-EILFA--FSKD 849 (870)
Q Consensus 791 ------------------~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W-~~~~~--~~~~ 849 (870)
-||+...-.--+..++-+..++|+|||++++.-...-...++.++....+ ..... +-.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 13332211112347889999999999999999877778899999999994 32221 3334
Q ss_pred CceEEEEEe
Q 002884 850 QEGVLSAQK 858 (870)
Q Consensus 850 ~e~iL~~~K 858 (870)
.++++++++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666554
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=64.89 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=84.3
Q ss_pred cCCeee-cCCCCccccccHH-HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHH
Q 002884 431 TGEIIT-FPGGGTQFIHGAL-HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQ 504 (870)
Q Consensus 431 ~Ge~~~-FPgggt~F~~gA~-~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~ 504 (870)
+|+.++ |-.|+-+|+.... .|.+-+- .|.....+..++||-+|.|.|..++.|.+. +|+-+|++|.|+..+.
T Consensus 253 ~g~d~rLYldG~LQfsTrDe~RYhEsLV--~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 253 RGDDLRLYLDGGLQFSTRDEYRYHESLV--YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ecCceEEEEcCceeeeechhhhhhheee--ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 444454 5667777776543 2333221 222222345789999999999999999885 8999999999998776
Q ss_pred HHHHHHc---C---CCcEEEEcC-c-ccCCCCCCceeEEEecccccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 505 IQFALER---G---IPAISAVMG-T-KRLQFPRNVFDLVHCARCRVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 505 vq~A~er---g---l~~~~~v~d-a-e~LPfpd~SFDlV~Ss~~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....... | -|.+..+.+ + .-+--..+.||.|+.-. .-...+ ..+..-+.|.|+++|.+++..
T Consensus 331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 3333221 1 123333333 2 22333456899998742 111111 356777889999999999874
Q ss_pred C
Q 002884 570 T 570 (870)
Q Consensus 570 ~ 570 (870)
.
T Consensus 408 g 408 (508)
T COG4262 408 G 408 (508)
T ss_pred C
Confidence 3
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0046 Score=67.01 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=75.3
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCC-CCChhHHHhh-Ccc------ceec-cccccccCCCCccchhhhh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNS-PDTLPIIYER-GLF------GIYH-DWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~-~~tl~~i~eR-Gli------g~~h-~wce~f~tyPrtyDllHa~ 790 (870)
..+.|||+|||.|.++.+|... +- +.|.-++. +..+.++.+. ++. -+++ |.-+-+...|.+||+|=.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999988654 32 23444444 3555555544 222 2233 2222234456789999765
Q ss_pred ccccccc--CCcChhhHHHhhhhcccCCcEEEEe---cChhh---HHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 791 HLFSQLK--NRCKLVPVMAEVDRIVRPGGKLIVR---DEPSA---VTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 791 ~lfS~~~--~rc~~~~vl~EmDRILRPgG~~iir---d~~~~---~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.|.... .......++.++-++|+|||.+++- ..... +..++.+....-+.+.. ......|++|.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~--~~~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPA--ESHGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEec--CCCccEEEEEEC
Confidence 343211 1122357899999999999999983 22222 34444443322222211 223456888876
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0017 Score=68.33 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=68.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH-HHhhCccce--------------eccccccccCCC----C
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI-IYERGLFGI--------------YHDWCESFSTYP----R 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~-i~eRGlig~--------------~h~wce~f~tyP----r 782 (870)
..|||+|||.|-.|.+|++++. +|+-+|.. .-+.. ..+.|+... ++-+|..|..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 4699999999999999999975 45555543 33332 233444211 122343333332 2
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEE-EEe--c-------Ch--hhHHHHHHHHHcCCceEEEe
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKL-IVR--D-------EP--SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~-iir--d-------~~--~~~~~~~~~~~~l~W~~~~~ 845 (870)
+||+|-..++|-.. .......++-.|-|+|||||.+ ++. . +. -....|+.++. -+|++...
T Consensus 113 ~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~ 185 (213)
T TIGR03840 113 PVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELL 185 (213)
T ss_pred CcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEE
Confidence 46665444444332 2344567899999999999964 332 1 11 11355666554 35777654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0012 Score=72.61 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=63.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh---Cc-----cceeccccccccCCCCcc-----chhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER---GL-----FGIYHDWCESFSTYPRSY-----DLLH 788 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR---Gl-----ig~~h~wce~f~tyPrty-----DllH 788 (870)
.+|||+|||+|.++..|++...=...++++|-. .+|..+.++ .. .++..|.++.+ .+|..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEE
Confidence 569999999999999988662102378899977 788777665 22 23334554432 334333 2333
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+...|.... +-....+|-+|-+.|+|||.|+|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 333333332 223457899999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=62.22 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC----CCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF----PRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf----pd~SFDlV~ 536 (870)
+++.+||-||+++|.....+.+ ..|.++++|+..... .+..|.+|. +++-+.++.+.|. --+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rd-L~~la~~R~--NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRD-LLNLAKKRP--NIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH-HHHHHHHST--TEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHH-HHHHhccCC--ceeeeeccCCChHHhhcccccccEEE
Confidence 4688999999999987777765 279999999975544 336666663 4555555444441 134899999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+-- .-......++..+...||+||.|+++
T Consensus 149 ~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 149 QDV---AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EE----SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecC---CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 962 22334477888899999999999998
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0017 Score=67.23 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC--Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
..|||+|||+|.+++.|....- .|+-++.. +.+..+.++ |+ +-+.+.- .+..+| ..||+|.+++.+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD--GWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC--cccCCCcCCCcCEEEEccCc
Confidence 4699999999999988776521 23344433 444443332 44 3333321 123443 689998875433
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..+.-++-+.|+|||.+++.
T Consensus 155 ---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 155 ---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ---------hhhhHHHHHhcCCCcEEEEE
Confidence 23455677899999999985
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0081 Score=66.13 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Cc-ccCC-C-CCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GT-KRLQ-F-PRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-da-e~LP-f-pd~SFDlV~S 537 (870)
.+++|||+=|=||.|+.+.+.. .|+.||.|...+..++.+++.. +++ .+.++. +. ..+. + ..+.||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999998776543 7999999999999988655544 432 344444 32 1121 1 2468999998
Q ss_pred cccccc---c--ccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVP---W--HIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alh---w--~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
-.-++. + ..+...++..+.++|+|||+|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 422111 1 12336788899999999999998743
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0019 Score=68.15 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=73.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH-HHhhCccce--------------eccccccccCC---C-Cc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI-IYERGLFGI--------------YHDWCESFSTY---P-RS 783 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~-i~eRGlig~--------------~h~wce~f~ty---P-rt 783 (870)
.|||.|||.|--|.+|+++|. +|+.+|-. .-+.. +.++|+... ++-+|..+..+ + .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999987 67777754 44443 456776432 12233333333 2 36
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEE-e-----c----Ch--hhHHHHHHHHHcCCceEEEe
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV-R-----D----EP--SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii-r-----d----~~--~~~~~~~~~~~~l~W~~~~~ 845 (870)
||+|-..++|.... ......++-.|.|+|+|||.+++ . + ++ -..+.|+.++.. +|++...
T Consensus 117 fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 117 VDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred eeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEe
Confidence 77766555555442 24456899999999999996443 2 1 11 124666666642 3887654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.00072 Score=71.34 Aligned_cols=99 Identities=20% Similarity=0.368 Sum_probs=69.2
Q ss_pred ccccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhC-ccceeccccccccCCCCccchhhhh
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~ 790 (870)
...|..++.|+|+|+|.|.++++|... .++|+ |.|..+..+.+.. +--+=||+. .++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccHH---hhhcc-ccceeee
Confidence 467889999999999999999999754 34444 3343344444432 223334554 67888 9999888
Q ss_pred cccccccCCcChhhHHHhhhhcccCC--cEEEEecC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPG--GKLIVRDE 824 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPg--G~~iird~ 824 (870)
+++-.+.+ -....||--+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 88877754 23346999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.003 Score=70.27 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCccc--eeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLFG--IYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGlig--~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||.+||+|+|...+...+. .|+-+|.. .++... ..-|+-. +++.=...++..+.+||+|-++--|..
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 4699999999999765544443 34444543 333322 2235544 323222232222378999888633322
Q ss_pred ---ccC---CcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 796 ---LKN---RCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ---~~~---rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
... ......+|-++-|+|+|||++++--+... .++++++.-.| +.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-ch
Confidence 111 12356899999999999999887654432 45566788888 53
|
This family is found exclusively in the Archaea. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0022 Score=69.00 Aligned_cols=107 Identities=20% Similarity=0.334 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCC----------CeEEEEeccCCCCCChhHHHhhC----ccce-----eccccccccCCC-C
Q 002884 723 RNVMDMRAVYGGFAAALKDL----------QVWVMNVVNVNSPDTLPIIYERG----LFGI-----YHDWCESFSTYP-R 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~----------~vwvmNvvp~~~~~tl~~i~eRG----lig~-----~h~wce~f~tyP-r 782 (870)
-+||||++|+|-.|=.+.+. .|.|.-+ +|.+|.+...|- |-.- +-.-.|.++ || .
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di----np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI----NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC----CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence 46999999999877766543 3444332 457777765554 4332 112346766 87 8
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhhH-HHHHHHHHc
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAV-TEVENFLKS 837 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~-~~~~~~~~~ 837 (870)
+||+.-.. |+. .+--.+..+|-|+.|||+|||.|.+=+=..+- ..|+.++..
T Consensus 177 s~D~yTia--fGI-RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 177 SFDAYTIA--FGI-RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred cceeEEEe--cce-ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 99985431 111 12134788999999999999998876543333 344444444
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0031 Score=68.26 Aligned_cols=90 Identities=19% Similarity=0.411 Sum_probs=69.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..++||+|||-|+.-+.|+.. .-.|..++.. .+.-...+||+--+-. +|-+. +..||+|-|-+|+ +|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----DR 163 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----DR 163 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----hc
Confidence 567999999999999999764 1234455554 6788889999753333 47543 5679999997776 57
Q ss_pred cChh-hHHHhhhhcccCCcEEEEe
Q 002884 800 CKLV-PVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 800 c~~~-~vl~EmDRILRPgG~~iir 822 (870)
|.-+ .+|-+|-+.|+|+|.+|+.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEE
Confidence 8865 7888999999999999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0016 Score=67.69 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=74.1
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCCC-----CChhHHHhhCccceecccccccc---C-C-CCccchhhhhc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFS---T-Y-PRSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~---t-y-PrtyDllHa~~ 791 (870)
.+||+|||.|.|..+|+.. +. |++-++-. ..+..+..+||--+.--.|.+.. . + |.+.|.||-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i-- 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI-- 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--
Confidence 5999999999999999754 33 44444432 45666777888555544444433 1 2 378888776
Q ss_pred ccccc------cCCcCh-hhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC--CceEE
Q 002884 792 LFSQL------KNRCKL-VPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL--HWEIL 843 (870)
Q Consensus 792 lfS~~------~~rc~~-~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l--~W~~~ 843 (870)
.|..= .+|..+ ...|-++-|+|+|||.|.|. |...+...+...+... .++..
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 45421 123333 47888999999999999876 7777777787777775 45543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.016 Score=65.54 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=40.1
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
..|||+-||+|.|+..|+.. .|+|+++.+.++..|. ..|...++.+..++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIR 250 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEE
Confidence 38999999999999999986 9999999999998887 567777887766654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.039 Score=58.48 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC---CcEEEEcCc--ccCC-CCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI---PAISAVMGT--KRLQ-FPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl---~~~~~v~da--e~LP-fpd~SFDlV~ 536 (870)
.++++||.||-|-|.....+.++ .-+.++..|.-+.. .+..|. .++..+.+. ..+| ++++.||-|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr-----mr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR-----MRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH-----HHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 36899999999999988888776 55667887764322 222222 234444442 2233 6788999998
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--- .-....|...+...+.|+|||+|+|-+.
T Consensus 175 yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 742 1244467788889999999999999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.031 Score=63.01 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cc-ccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GT-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-da-e~LPfpd~SFDlV~Ss~~a 541 (870)
.++.++|||||++|.|+..|.++ .|++||..+-. . .. +.-+.+.... +. ...| +.+.+|+|+|-..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~--~----~L--~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA--Q----SL--MDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC--H----hh--hCCCCEEEEeccCcccCC-CCCCCCEEEEecc-
Confidence 46889999999999999999987 79999976631 1 11 1223333333 33 2233 2678999999632
Q ss_pred cccccChHHHHHHHHhhcCCC--cEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPG--GYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPG--G~Lv~S 568 (870)
..+..++.-|.+-|..| ..++|.
T Consensus 280 ----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred ----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 45667777777777666 456665
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.025 Score=66.92 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred CCCEEEEECCCCchhHHHHhc------------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccC---CCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRL---QFPR 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~L---Pfpd 529 (870)
...+|||.|||+|.|...++. ..++|+|+++..+..+.................+. ..+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999988766643 26799999998877766544332212111111111 001 1112
Q ss_pred CceeEEEecc
Q 002884 530 NVFDLVHCAR 539 (870)
Q Consensus 530 ~SFDlV~Ss~ 539 (870)
+.||+|++|.
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.039 Score=57.33 Aligned_cols=99 Identities=22% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcC--CCcEEEEcCcc-cCCCCCC--ceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERG--IPAISAVMGTK-RLQFPRN--VFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~erg--l~~~~~v~dae-~LPfpd~--SFDlV~S 537 (870)
-.+.++||+=+|+|.++..-+.+ .++.||.+......... .....+ .....+..++. .|+-... .||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~-N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKE-NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHH-HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 35789999999999999888876 89999999986655543 333334 33444555543 2222222 4999998
Q ss_pred cccccccccCh---HHHHHH--HHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG---GKLLLE--LNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~---~~vL~E--i~RVLKPGG~Lv~S 568 (870)
-. +|..+. ...+.. -...|+|||.+++.
T Consensus 121 DP---Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 121 DP---PYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CC---CCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 53 344332 222332 45789999999997
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.011 Score=52.25 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=56.4
Q ss_pred cccccccchh--HHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c--cceec-cccccccCCC--Cccchhhhhcc
Q 002884 725 VMDMRAVYGG--FAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L--FGIYH-DWCESFSTYP--RSYDLLHADHL 792 (870)
Q Consensus 725 vmDm~ag~Gg--faaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l--ig~~h-~wce~f~tyP--rtyDllHa~~l 792 (870)
|+|+|||.|. +.+.+...+..+.. ++.. ..+.....+. + +..+. ++.....+++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55566555433333 3333 2333322222 1 22333 4444234444 389998 6333
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 678999999999999999998654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0053 Score=70.78 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH---Hhh-Cccceecccc-ccc--cC--CCCccchhhhh-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII---YER-GLFGIYHDWC-ESF--ST--YPRSYDLLHAD- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i---~eR-Glig~~h~wc-e~f--~t--yPrtyDllHa~- 790 (870)
..|||||||.||++.+|+.. + --.|+-+|.. ..|..+ .+| |+-..++.-| ..+ .. -+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46999999999999888764 2 0124444543 444433 332 5531111111 111 12 13789998754
Q ss_pred -----cccccccC---C---------c-ChhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 791 -----HLFSQLKN---R---------C-KLVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 791 -----~lfS~~~~---r---------c-~~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
|+|..... + . .-..+|.++-|+|||||.+|+.. +.+-...|+.++..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 44432110 0 0 01369999999999999999982 22334444445443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.038 Score=60.31 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC--cE--EEEcCcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP--AI--SAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~--~~--~~v~dae~LPfpd~SFDlV~Ss 538 (870)
.++...||+||.|||.++..|++. .|++++++|.|+.+-..+. .|.+ .. +.+++...+++ -.||+++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDL--PRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCC--cccceeecc
Confidence 467889999999999999999875 9999999999987655332 3443 22 23333333333 349999997
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=60.27 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHHhhCccceec-cccccccCCCCccchhhhhcccccccCCcC
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIYERGLFGIYH-DWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
.|-|||||-|-.|+++.+. .|.-.-+++.... +.. |. ...+-=+.+.|++-. -+|+-. -+
T Consensus 75 viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-------------Vtacdi-a~vPL~~~svDv~Vf--cLSLMG--Tn 136 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-------------VTACDI-ANVPLEDESVDVAVF--CLSLMG--TN 136 (219)
T ss_dssp -EEEES-TT-HHHHH--S---EEEEESS-SSTT-------------EEES-T-TS-S--TT-EEEEEE--ES---S--S-
T ss_pred EEEECCCchHHHHHhcccCceEEEeeccCCCCC-------------EEEecC-ccCcCCCCceeEEEE--EhhhhC--CC
Confidence 5899999999999988643 4555555554321 111 22 222222378887432 122212 36
Q ss_pred hhhHHHhhhhcccCCcEEEEecCh---hhHHHHHHHHHcCCceEEEeecCCC-ceEEEEEeCC
Q 002884 802 LVPVMAEVDRIVRPGGKLIVRDEP---SAVTEVENFLKSLHWEILFAFSKDQ-EGVLSAQKGN 860 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~iird~~---~~~~~~~~~~~~l~W~~~~~~~~~~-e~iL~~~K~~ 860 (870)
..+.|.|..|||||||.++|..-. .-+..-...+.+|..++...+..+. -.++..+|.-
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 779999999999999999998532 3345556778899999987654443 3455556644
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0038 Score=66.45 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred ccccccccccccchhH----HhhhcCCC-eEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCccc
Q 002884 720 SNVRNVMDMRAVYGGF----AAALKDLQ-VWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRSYD 785 (870)
Q Consensus 720 ~~~RnvmDm~ag~Ggf----aaaL~~~~-vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----PrtyD 785 (870)
..-++|||+|||+|.- |+++...+ |+.+=+-|.-..-....+..-|+ |-+++ +..+.+..+ ..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3467899999888863 33443332 33322222111112222334454 44444 444443332 35899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------------hhHHHHHHHHHcC----CceEEE
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------------SAVTEVENFLKSL----HWEILF 844 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------------~~~~~~~~~~~~l----~W~~~~ 844 (870)
+|-.++--. ....++.++-|+|||||.+|+.+.. .....|+++.+.+ +|...+
T Consensus 147 ~VfiDa~k~------~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 147 FAFVDADKP------NYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EEEECCCHH------HHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 987754322 3345778889999999999975311 0123444444444 444433
Q ss_pred eecCCCceEEEEEeC
Q 002884 845 AFSKDQEGVLSAQKG 859 (870)
Q Consensus 845 ~~~~~~e~iL~~~K~ 859 (870)
. .-..++++++|.
T Consensus 221 l--p~gdG~~i~~k~ 233 (234)
T PLN02781 221 I--SIGDGVTLCRRL 233 (234)
T ss_pred E--EeCCccEEEEEe
Confidence 2 125789999885
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.014 Score=64.71 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQ 506 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq 506 (870)
.++..+||++||.|.++..+++. .|+|+|.++.++..+...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 45779999999999999888764 699999999998887643
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.047 Score=61.54 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-
Q 002884 440 GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA- 515 (870)
Q Consensus 440 ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~- 515 (870)
...+|+.+-..=..++...+. .+.+|||+=||.|.|+..++.. .|+++|++|..+...+ +.++..++..
T Consensus 167 ~Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~ 239 (341)
T COG2520 167 AKVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGR 239 (341)
T ss_pred HHeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccce
Confidence 334555554433344555433 4899999999999999888764 5999999998877766 3444445444
Q ss_pred EEEEc-CcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 516 ISAVM-GTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 516 ~~~v~-dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..+. |...++..-+.||-|++++ . .....++..+.+.|++||.+.+-
T Consensus 240 v~~i~gD~rev~~~~~~aDrIim~~--p---~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 240 VEPILGDAREVAPELGVADRIIMGL--P---KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred eeEEeccHHHhhhccccCCEEEeCC--C---CcchhhHHHHHHHhhcCcEEEEE
Confidence 33444 4455554448899999874 1 23467888889999999999876
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0089 Score=69.25 Aligned_cols=118 Identities=20% Similarity=0.361 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhh--
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHAD-- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~-- 790 (870)
..|||||||.|+++.+|.+. +- ..|+-+|.. ..+..+.+ .|+ +-+++ |..+....++++||+|-++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 56999999999999888764 11 133444443 44444332 354 23333 4433333456899997554
Q ss_pred ----ccccccc------CCcCh-------hhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHcC-CceE
Q 002884 791 ----HLFSQLK------NRCKL-------VPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 791 ----~lfS~~~------~rc~~-------~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~l-~W~~ 842 (870)
|++.... ....+ ..+|.++-|+|||||.+|+.- ..+....++.+++.. .|++
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 3333110 00111 257899999999999999762 123344555555553 2544
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.062 Score=56.57 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCchhHHHHh---cC-CEEEEeCChhhHHHHHHHHH------HHcCCC--cEEEEcCc-ccCCCCC---
Q 002884 466 KYTRVSLDVGCGVASFGGYLF---ER-DVLTMSFAPKDEHDAQIQFA------LERGIP--AISAVMGT-KRLQFPR--- 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La---~r-~VtgVDiSp~ml~~A~vq~A------~ergl~--~~~~v~da-e~LPfpd--- 529 (870)
.+....+|||||.|......+ .. ..+||++.+.....|..... ...|.. .+.+..++ ...++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 457899999999997543322 23 59999999975544432211 112321 12222222 1111100
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..-|+|+++. +-|.++....|.++..-||||-+++-
T Consensus 121 s~AdvVf~Nn--~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNN--TCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE----TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEec--cccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2359999985 33556667788889999999988764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0078 Score=65.90 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=58.2
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHHhh------Cc-----cceeccccccccC-CCCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIYER------GL-----FGIYHDWCESFST-YPRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~eR------Gl-----ig~~h~wce~f~t-yPrtyDll 787 (870)
.-++||++|||.|++++.|.+. ++--+-+|.++. ..+.++.+. |+ +-++++-...|.. -+.+||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999998876 553233333332 333333321 21 2334433333332 24789998
Q ss_pred hhhcccccccC--CcChhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADHLFSQLKN--RCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~lfS~~~~--rc~~~~vl~EmDRILRPgG~~iir 822 (870)
=++. +..+.. .---...+..+-|+|+|||.+++.
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6642 111100 000135677899999999999986
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=62.92 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=81.8
Q ss_pred ccccccccccchhHHhhhcCC-C-eEEEEeccCCCC------CChhHHHhhCccceeccccccccCC-C-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-Q-VWVMNVVNVNSP------DTLPIIYERGLFGIYHDWCESFSTY-P-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~-vwvmNvvp~~~~------~tl~~i~eRGlig~~h~wce~f~ty-P-rtyDllHa~~ 791 (870)
...|||+|||.|..+-+|..+ + += +-.|.++.. .++...-=-.-|-++|+--..|... + .+||+|-|+=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 567999999999999888877 3 31 122333321 1111111112366666422222222 3 3699975554
Q ss_pred ccc---------------cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 792 LFS---------------QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 792 lfS---------------~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
=|= .+...|.+++++-=.-++|+|||++.+=-+.+-+..+-.++++++|.....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 332 223458899999999999999999999999999999999999999998643
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.04 Score=57.60 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCCEEEEECCCCchhHH--HHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGG--YLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~--~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.+++|||+|.|+|..+. .++.. .|+..|+.|....... -.+...|+...+ +. ...+ ..+..||+|+.+.. +.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~-lNa~angv~i~~-~~-~d~~-g~~~~~Dl~LagDl-fy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR-LNAAANGVSILF-TH-ADLI-GSPPAFDLLLAGDL-FY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh-cchhhccceeEE-ee-cccc-CCCcceeEEEeece-ec
Confidence 57899999999996554 34433 8999999986443333 334445543222 22 2222 36778999999763 22
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E 578 (870)
-+.....++. +.+.|+-.|.-++...|....++.
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCch
Confidence 2222345555 777777777766665666665554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.075 Score=65.34 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc----cceec-cccccccCCCCccchhhhhc-
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL----FGIYH-DWCESFSTYPRSYDLLHADH- 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl----ig~~h-~wce~f~tyPrtyDllHa~~- 791 (870)
+.|||++||+|+|+.+++..+.- .|+-+|.. ..+..+.+ -|+ +-+++ |..+-+..++++||+|=+|-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57999999999999999987652 35556654 44443322 244 22333 44332223467899986642
Q ss_pred ----------ccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 792 ----------LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 792 ----------lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
+|+... ....++..+-|+|+|||.+++.....-+......+....+.+.+.
T Consensus 618 ~f~~~~~~~~~~~~~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 221111 244678888999999999999765555555577777778888765
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.026 Score=61.28 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=71.7
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh-----C-----ccceec-cccccccCCCCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER-----G-----LFGIYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR-----G-----lig~~h-~wce~f~tyPrtyDll 787 (870)
.-++||++|||.|+++..|.+.+ + .+++-++.. ..+..+.+. | -+-+++ |-.+-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 45689999999999999887764 4 233333333 333333221 1 112222 2212112336899998
Q ss_pred hhhccccccc-CCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe------ecCCCceEEE
Q 002884 788 HADHLFSQLK-NRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA------FSKDQEGVLS 855 (870)
Q Consensus 788 Ha~~lfS~~~-~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~ 855 (870)
=++....... ...-....+-.+-|+|+|||.+++.-. ...+..+...++..=..+... +....-.+++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEE
Confidence 6654321111 111124567788999999999998632 222333333333332222221 1223356888
Q ss_pred EEe
Q 002884 856 AQK 858 (870)
Q Consensus 856 ~~K 858 (870)
|.|
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 887
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.03 Score=61.43 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=70.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccC-C-CCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRL-Q-FPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~L-P-fpd~SFDlV~ 536 (870)
..++..|||+.+|.|.=+..|+. ..|++.|+++.-+.... ..+.+.|+.++..+. +...+ + .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 45788999999999976555554 27999999998766554 455566777666553 33222 2 2334699998
Q ss_pred e-cccc----cccccCh----------------HHHHHHHHhhc----CCCcEEEEEECC
Q 002884 537 C-ARCR----VPWHIDG----------------GKLLLELNRVL----RPGGYFVWSATP 571 (870)
Q Consensus 537 S-s~~a----lhw~~D~----------------~~vL~Ei~RVL----KPGG~Lv~S~~p 571 (870)
. ..|+ +.-+++. ..+|..+.+.| ||||+++.++..
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 5 1121 1111111 26789999999 999999999643
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0019 Score=59.77 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=58.9
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc---cceecccccccc-CCC-Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL---FGIYHDWCESFS-TYP-RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl---ig~~h~wce~f~-tyP-rtyDllHa~~lf 793 (870)
.|||+|||.|.|+.++.... ..+++-+|-. ..+.+.. ..|+ +.+++.-...+. .++ ..||+|=++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999998775 2344444432 2222211 1222 556663223333 454 899999888777
Q ss_pred cccc-----CCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLK-----NRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~-----~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.... .+=....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6431 1113457889999999999999873
|
... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=63.57 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred ccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHH---hh-Cc--cceeccccccccCCCCccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIY---ER-GL--FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~---eR-Gl--ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
.||||+||.||++.+|... .- .|+.+|.. ..+..+. +| |+ +-+++.=...+......||.|-.|-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 4999999999999777553 11 24555654 4443332 22 44 233332222333333569998654333
Q ss_pred cccc------C----Cc---------ChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLK------N----RC---------KLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~------~----rc---------~~~~vl~EmDRILRPgG~~iir 822 (870)
|... . +. ....+|-++-|+|||||++|+.
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3210 0 00 1125899999999999999998
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.011 Score=65.47 Aligned_cols=116 Identities=14% Similarity=0.228 Sum_probs=79.0
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHHHhhCcccee---cc---ccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPIIYERGLFGIY---HD---WCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i~eRGlig~~---h~---wce~f~tyPrtyDllHa~~lfS~ 795 (870)
|.|||+|||-|-+.=.|+..+- -|+=+=|..- -.+++-+-+-++|.- |- =-|.++. ..+||+|-|.|||=+
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 6799999999999988887765 4444433322 344455555555421 11 1244444 689999999999865
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe-----cC----------------hh---hHHHHHHHHHcCCceEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR-----DE----------------PS---AVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir-----d~----------------~~---~~~~~~~~~~~l~W~~~ 843 (870)
. =+..+.|.++-..|||||-+|+- .. +. .+..|+..+++..+.-.
T Consensus 195 r---r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 195 R---RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred c---CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 3 34556999999999999999976 11 11 15778888888888753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=59.38 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHh--cC-----------------------------------------
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF--ER----------------------------------------- 488 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La--~r----------------------------------------- 488 (870)
-+.|+..+..+..-.++..++|-=||+|.+....+ ..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 34444444433333445799999999998764332 21
Q ss_pred CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEecccccccccCh----------HHHHHHHH
Q 002884 489 DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG----------GKLLLELN 556 (870)
Q Consensus 489 ~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~----------~~vL~Ei~ 556 (870)
.++|+|+++.++..|+ ..|+..|+. +.+.+.+...++-+-+.+|+|+||. +|-... ..+...+.
T Consensus 256 ~~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 256 IIYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLK 331 (381)
T ss_pred eEEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHH
Confidence 1679999999999988 577788876 3334445566654437899999983 443211 23445666
Q ss_pred hhcCCCcEEEEEE
Q 002884 557 RVLRPGGYFVWSA 569 (870)
Q Consensus 557 RVLKPGG~Lv~S~ 569 (870)
++++--+.++|++
T Consensus 332 ~~~~~ws~~v~tt 344 (381)
T COG0116 332 RLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCceEEEEc
Confidence 7888888899884
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.038 Score=56.24 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.7
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--c---cCCCCCCceeEEEec
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--K---RLQFPRNVFDLVHCA 538 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e---~LPfpd~SFDlV~Ss 538 (870)
.+|||+.||.|..+..++.. .|+++|+++..+..++ ..|.-.|+. .+.++.++ . .+..... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEEC
Confidence 37999999999999999886 8999999999888776 566777754 45566553 2 2222222 7999876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.021 Score=61.06 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=62.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-------Cccceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-------GLFGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-------Glig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
+.|||+|||+|+|+..|.+.++ -.|+.+|.. ++|..-+.. +..-+-+ +|.+-...++ +||+. |
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~-~~Dvs-----f 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA-TFDVS-----F 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce-eeeEE-----E
Confidence 5699999999999999998864 334555544 354432211 2222222 4444322222 44432 2
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe-------------------cC---hhhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR-------------------DE---PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir-------------------d~---~~~~~~~~~~~~~l~W~~~~ 844 (870)
+++..+|-.|.++|+| |.+|+= |. ..++.++...+..+.|.+.-
T Consensus 149 ------iS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 149 ------ISLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred ------eehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 1334477788888888 776644 22 23356677777788888753
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.058 Score=58.56 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=72.2
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcChh
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLV 803 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~ 803 (870)
.|-|||||-|-.|. =...+|..|-+++++..=+. -|. ...+.-.+|.|++-. -+|+-. -++.
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~------------cDm-~~vPl~d~svDvaV~--CLSLMg--tn~~ 244 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIA------------CDM-RNVPLEDESVDVAVF--CLSLMG--TNLA 244 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceee------------ccc-cCCcCccCcccEEEe--eHhhhc--ccHH
Confidence 38899999887664 22347888988888764210 011 111222389998433 122221 3677
Q ss_pred hHHHhhhhcccCCcEEEEecChh---hHHHHHHHHHcCCceEEEeecCCCc-eEEEEEe
Q 002884 804 PVMAEVDRIVRPGGKLIVRDEPS---AVTEVENFLKSLHWEILFAFSKDQE-GVLSAQK 858 (870)
Q Consensus 804 ~vl~EmDRILRPgG~~iird~~~---~~~~~~~~~~~l~W~~~~~~~~~~e-~iL~~~K 858 (870)
+.+.|..|||+|||.++|..-.. -+.....-+..|..++...+..+.. .++..+|
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 99999999999999999985322 2333555678899988765444433 3333344
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.022 Score=66.02 Aligned_cols=116 Identities=20% Similarity=0.356 Sum_probs=65.7
Q ss_pred ccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCcc--ceecccccccc----CCCCccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGLF--GIYHDWCESFS----TYPRSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGli--g~~h~wce~f~----tyPrtyDllHa 789 (870)
.|||||||.||++.+|... .- .|+-+|.. ..+..+.+ -|+- -+++.=...+. ..+.+||.|-+
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 5999999999999888754 11 24444543 44444332 2442 22221111222 12368999765
Q ss_pred h------cccccccC------CcC-------hhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHcC-CceE
Q 002884 790 D------HLFSQLKN------RCK-------LVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 790 ~------~lfS~~~~------rc~-------~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~l-~W~~ 842 (870)
+ |++..-.. ... ...+|.++-|+|||||.+|+.. +.+-...|...++.. .|++
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 4 33321100 011 2478999999999999998773 334456666666654 3554
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.026 Score=65.95 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=63.6
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHH
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFA 508 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A 508 (870)
.|=.|+|+.+ .|..-...-.+.|-.++...+....+..+||+-||||.++..|+++ .|+|++++|..+..|. ..|
T Consensus 349 ~~ltF~iSp~--AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA 425 (534)
T KOG2187|consen 349 LGLTFRISPG--AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNA 425 (534)
T ss_pred CCeEEEECCc--hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcc
Confidence 3444555433 2333333334444455544444455689999999999999999987 9999999999888887 577
Q ss_pred HHcCCCcEEEEcC-ccc
Q 002884 509 LERGIPAISAVMG-TKR 524 (870)
Q Consensus 509 ~ergl~~~~~v~d-ae~ 524 (870)
...|+.+..++.+ ++.
T Consensus 426 ~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 426 QINGISNATFIVGQAED 442 (534)
T ss_pred hhcCccceeeeecchhh
Confidence 7889988888887 443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.015 Score=67.09 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=64.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hh-Cc-cceec-cccccccCC-CCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ER-GL-FGIYH-DWCESFSTY-PRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eR-Gl-ig~~h-~wce~f~ty-PrtyDllHa~~lfS 794 (870)
..|||+|||.|+++.+|.+..- -..|+-+|.. ..+..+. +| |+ +.+++ |..+....+ +.+||+|-++.=+|
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 3599999999999988876520 0134445543 4444432 22 33 22222 333321223 36899987444333
Q ss_pred cc----cC------C---------cChhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 795 QL----KN------R---------CKLVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 795 ~~----~~------r---------c~~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
.. ++ + .....+|.++-|+|||||.+++.. +.+-...++..+++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 11 00 0 112368889999999999999874 23334455555544
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.096 Score=58.93 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--------------------CEEEEeCChhhHHHHHHHHHHH-----cCCC-cEEEEc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--------------------DVLTMSFAPKDEHDAQIQFALE-----RGIP-AISAVM 520 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--------------------~VtgVDiSp~ml~~A~vq~A~e-----rgl~-~~~~v~ 520 (870)
..-+|+|+||..|..+..+... .|+--|+-.++...-....... ...+ ....+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999655444320 4666688777765433222111 1111 122233
Q ss_pred Cc-ccCCCCCCceeEEEecccccccc
Q 002884 521 GT-KRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 521 da-e~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+. ..--||+++.|+++|+. ++||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~-alHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSY-ALHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEec-hhhhc
Confidence 32 22238899999999985 59997
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.049 Score=61.96 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHh--------hC-c----cceec-cccccccCCCCcc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYE--------RG-L----FGIYH-DWCESFSTYPRSY 784 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~e--------RG-l----ig~~h-~wce~f~tyPrty 784 (870)
.-++||++|+|.|+.++.+.+.+ + .+|+-++-. ..+.++.+ +| + +-+++ |-.+-+..-++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 46799999999999999888764 3 344445443 44555443 11 1 11222 2222122234789
Q ss_pred chhhhhccccccc--CCcChhhHHHhhhhcccCCcEEEEecCh-----hhHHHHHHHHHcCCceEEEeec-----CCCce
Q 002884 785 DLLHADHLFSQLK--NRCKLVPVMAEVDRIVRPGGKLIVRDEP-----SAVTEVENFLKSLHWEILFAFS-----KDQEG 852 (870)
Q Consensus 785 DllHa~~lfS~~~--~rc~~~~vl~EmDRILRPgG~~iird~~-----~~~~~~~~~~~~l~W~~~~~~~-----~~~e~ 852 (870)
|+|=++--..... .+.--...+-.+-|.|+|||.|++.... .+...+...++.....+..... ...=.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg 307 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG 307 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence 9987762111100 1111135778899999999999887432 2223344445554444433211 12256
Q ss_pred EEEEEeCCCC
Q 002884 853 VLSAQKGNWQ 862 (870)
Q Consensus 853 iL~~~K~~w~ 862 (870)
+++|.|..+.
T Consensus 308 F~~as~~~~~ 317 (374)
T PRK01581 308 FHIAANSAYV 317 (374)
T ss_pred EEEEeCCccc
Confidence 7888776543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.026 Score=65.62 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=62.6
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHH----HhhCccceeccccccccCC--CCccchhhhh--
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPII----YERGLFGIYHDWCESFSTY--PRSYDLLHAD-- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i----~eRGlig~~h~wce~f~ty--PrtyDllHa~-- 790 (870)
..|||||||.||++.+|.+. .- .|+-+|.. ..+..+ -..|+- .+.-.|.....+ +.+||+|-+|
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCC
Confidence 45999999999988777642 11 34445544 444333 234552 122222222222 3679997643
Q ss_pred ----cccccc-----c-CCcC-------hhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 791 ----HLFSQL-----K-NRCK-------LVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 791 ----~lfS~~-----~-~rc~-------~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
|+|... . ..-. -..+|-++-|+|||||.+|+.. +.+-...|+.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 333211 0 0011 1258999999999999999984 23334556666654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.018 Score=66.70 Aligned_cols=110 Identities=20% Similarity=0.344 Sum_probs=65.1
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCC-CCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTY-PRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~ty-PrtyDllHa~ 790 (870)
..||||+||.||.+.+|+.. +- .|+.+|.. ..|..+.++ |+ +-+++ |.. .+..+ +.+||+|-+|
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEEC
Confidence 45999999999998877653 22 34555554 555554333 54 22333 333 23323 4789998664
Q ss_pred cccccccC-C--------c----------ChhhHHHhhhhcccCCcEEEEe----cChhhHHHHHHHHH
Q 002884 791 HLFSQLKN-R--------C----------KLVPVMAEVDRIVRPGGKLIVR----DEPSAVTEVENFLK 836 (870)
Q Consensus 791 ~lfS~~~~-r--------c----------~~~~vl~EmDRILRPgG~~iir----d~~~~~~~~~~~~~ 836 (870)
---|...- | - .-..+|.+.-++|||||.+++. .+.+....|+.++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 33332210 0 0 1135788999999999999998 33444455555554
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.007 Score=61.02 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=40.1
Q ss_pred ccCCCCCCceeEEEeccccccccc-ChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 523 KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 523 e~LPfpd~SFDlV~Ss~~alhw~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+|.++|.|+|++.+..-|... ....++++++|+|||||+|-++++.+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 567899999999999875444433 34689999999999999999995543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.16 Score=58.30 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCEEEEECCCCchhHHHHhc-------------------CCEEEEeCChhhHHHHHHHHHHH-------------cCCCc
Q 002884 468 TRVSLDVGCGVASFGGYLFE-------------------RDVLTMSFAPKDEHDAQIQFALE-------------RGIPA 515 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-------------------r~VtgVDiSp~ml~~A~vq~A~e-------------rgl~~ 515 (870)
..+|+|+|||+|..+..+.. ..|..-|+-.++..........- .+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~- 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR- 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC-
Confidence 56899999999966544321 14555577666654433222110 1111
Q ss_pred EEEEcC---c-ccCCCCCCceeEEEeccccccccc
Q 002884 516 ISAVMG---T-KRLQFPRNVFDLVHCARCRVPWHI 546 (870)
Q Consensus 516 ~~~v~d---a-e~LPfpd~SFDlV~Ss~~alhw~~ 546 (870)
..++.+ . ..--||.++.+++||+.+ +||..
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 133333 1 222389999999999865 99974
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.021 Score=57.10 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=40.4
Q ss_pred cceeccccccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 767 FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 767 ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+..++.-++.++.-+.+||+|=+..++.... +...+|-||.|+|||||.|+|.|-
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4555556777643347999987755554443 566799999999999999998864
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=52.68 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHH-------HHHHHHHHHcCCCcEEEEcCc-ccCCCCCCc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEH-------DAQIQFALERGIPAISAVMGT-KRLQFPRNV 531 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~-------~A~vq~A~ergl~~~~~v~da-e~LPfpd~S 531 (870)
.+++.+|+|+=-|.|.|++.|... .|++. .|..+. ......+++....+...+... ..++ +...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 357899999999999999988764 34433 333221 111112222222222111111 2222 2333
Q ss_pred eeEEEe--------cccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHH
Q 002884 532 FDLVHC--------ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMD 603 (870)
Q Consensus 532 FDlV~S--------s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~ 603 (870)
.|+++. +. .+| ......+..+++++|||||++++.++-....... .. ....+.+.... ...
T Consensus 123 ~d~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~-~d-----t~~~~ri~~a~---V~a 191 (238)
T COG4798 123 LDLVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL-SD-----TITLHRIDPAV---VIA 191 (238)
T ss_pred ccccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh-hh-----hhhhcccChHH---HHH
Confidence 444443 22 122 2234789999999999999999985433221111 00 01122222222 355
Q ss_pred HHhhccceEEE
Q 002884 604 KLNSAGFAIYR 614 (870)
Q Consensus 604 ~L~daGfaI~r 614 (870)
.+..+||.+-.
T Consensus 192 ~veaaGFkl~a 202 (238)
T COG4798 192 EVEAAGFKLEA 202 (238)
T ss_pred HHHhhcceeee
Confidence 67788988766
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.27 Score=53.81 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCch--hHHHHh-----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVAS--FGGYLF-----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL 525 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~--~a~~La-----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L 525 (870)
.||.+.+..+......+..||||||--. ....++ +.+|+-+|..|.-+..++.-...... ....++.++.+-
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~ 132 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCC
Confidence 4455544443333257899999999642 233332 34899999999866655532222111 013344332111
Q ss_pred C-----------C--CCCceeEEEecccccccccC---hHHHHHHHHhhcCCCcEEEEEECCCcCchh
Q 002884 526 Q-----------F--PRNVFDLVHCARCRVPWHID---GGKLLLELNRVLRPGGYFVWSATPVYQKLG 577 (870)
Q Consensus 526 P-----------f--pd~SFDlV~Ss~~alhw~~D---~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~ 577 (870)
| + .+..+=++++ ..+||..| +..++..++..|.||.+|+++ ....+..+
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~--~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is-h~t~d~~p 197 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLV--AVLHFVPDDDDPAGIVARLRDALAPGSYLAIS-HATDDGAP 197 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEEC--T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE-EEB-TTSH
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeee--eeeccCCCccCHHHHHHHHHHhCCCCceEEEE-ecCCCCCH
Confidence 1 1 1233334444 45888755 489999999999999999999 33333333
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.18 Score=54.23 Aligned_cols=113 Identities=20% Similarity=0.265 Sum_probs=74.6
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG 521 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d 521 (870)
++|+..+...|... ....+++++||||+.||.|+..|+++ .|+++|+.-..++.-. + .-+.+...-.
T Consensus 61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R-~d~rV~~~E~ 130 (245)
T COG1189 61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----R-NDPRVIVLER 130 (245)
T ss_pred ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----h-cCCcEEEEec
Confidence 45555555444433 23346899999999999999999876 8999999887554432 1 2222222222
Q ss_pred --cccCC---CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 522 --TKRLQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 522 --ae~LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+. |. +..|+|+|-.+ |. .+..+|-.+..+|+|+|.+++-.-|-
T Consensus 131 tN~r~l~~~~~~-~~~d~~v~DvS---FI-SL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 131 TNVRYLTPEDFT-EKPDLIVIDVS---FI-SLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CChhhCCHHHcc-cCCCeEEEEee---hh-hHHHHHHHHHHhcCCCceEEEEecch
Confidence 22221 22 26789998632 32 47889999999999999998765443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.017 Score=64.71 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccccccccchhHHhhhcCC-C--eEEEEeccCCCC-CChhHH----HhhCcc--ceec-cccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSP-DTLPII----YERGLF--GIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
..|||+|||+|.+++.|.+. + -. |+-++.. ..+..+ ...|+- -+++ |..+. ......||+|.+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~~~fD~Ii~~- 156 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEFAPYDVIFVT- 156 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-ccccCCccEEEEC-
Confidence 35999999999999988753 1 11 2223332 333332 234542 2222 22222 1122579998873
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.+..+...+-|+|+|||.+++-.
T Consensus 157 --------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 --------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223334556778999999988853
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.15 Score=55.06 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCC---CceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPR---NVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd---~SFDlV~Ss~~ 540 (870)
++..|||||+|.|.++..|.+. +|+++++++.+.......+. ..+... ...|...+.++. +....|+++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N-- 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQPLLVVGN-- 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSSEEEEEEE--
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCCceEEEEE--
Confidence 6789999999999999999875 89999999986544332221 123333 344455555443 445677776
Q ss_pred ccccccChHHHHHHHHhhcCC---CcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRP---GGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKP---GG~Lv~S 568 (870)
+++. -...++..+...-+. ..+|++.
T Consensus 105 -lPy~-is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 105 -LPYN-ISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp -ETGT-GHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred -eccc-chHHHHHHHhhcccccccceEEEEe
Confidence 5552 235666666664444 3444443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.028 Score=60.05 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=74.5
Q ss_pred ccccccccchhHHhhhcCCC-eEEEEeccCCC-----CCChhHHHhhCc--cceeccccccccCC--CC-ccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNS-----PDTLPIIYERGL--FGIYHDWCESFSTY--PR-SYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~-----~~tl~~i~eRGl--ig~~h~wce~f~ty--Pr-tyDllHa~~l 792 (870)
.+|++|||.|.|=.+|+..+ =+ |++-++- ..-+..|-+.|| +.++..=+.-+..| |. +.|-|+- .
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999998662 11 3333332 256777889999 78887655555555 44 8998876 5
Q ss_pred ccc-------ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHH-HHHHHHc
Q 002884 793 FSQ-------LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTE-VENFLKS 837 (870)
Q Consensus 793 fS~-------~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~-~~~~~~~ 837 (870)
|.. .+.|=--...|-++.|+|+|||.|.+. |...+.+. +...+..
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 552 123323347889999999999999987 55555555 4444433
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.26 Score=52.05 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC----CCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF----PRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf----pd~SFDlV~S 537 (870)
+++.+||=||+.+|.....+.+- .+.++++|+.+...-. ..|.+| ++++-+..+.+.|. --+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence 46889999999999877777652 6999999998776543 566655 34455555545552 2356999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--+ -.....-+...+...||+||+++++
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 521 1233367788899999999988876
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.032 Score=64.12 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=70.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH---Hh-hCc----cceec-cccccccCC---CCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII---YE-RGL----FGIYH-DWCESFSTY---PRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i---~e-RGl----ig~~h-~wce~f~ty---PrtyDllHa 789 (870)
++|||++||+|+|+-+++..+. -.|+-+|.. ..+..+ ++ -|+ +-+++ |..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5699999999999866444442 133444543 333332 22 244 22333 444333333 258999877
Q ss_pred hccc-cccc-----CCcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCCceEEEe
Q 002884 790 DHLF-SQLK-----NRCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 790 ~~lf-S~~~-----~rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
|--+ +..+ ....+.+++.-.-++|+|||++++... ....+.+...+..-..++++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6332 1111 112455667777899999999998532 345566666777766676654
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.045 Score=56.75 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=75.8
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CC---h-hHHHhhCccc---eec-cccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DT---L-PIIYERGLFG---IYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~t---l-~~i~eRGlig---~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
+|||+|||-|.+=..|++.+.-- -++-+|=. .. - .++-.+|+.- ... |.-.+ ...+.-|||||--|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999876310 02233321 11 1 2334455542 222 44444 44467899998888776
Q ss_pred ccc-----CCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE
Q 002884 795 QLK-----NRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 795 ~~~-----~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~ 842 (870)
... ....+..++-=++++|+|||.|+|+.-.-..++|.+.+..-..+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 432 112335577788999999999999987777778777776665444
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=55.29 Aligned_cols=104 Identities=18% Similarity=0.294 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHhhhhhcC-CCCCEEEEECCCCchhHHHH----hcCCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc
Q 002884 447 GALHYIDFIQQAVPKIAWG-KYTRVSLDVGCGVASFGGYL----FERDVLTMSFAPKDEHDAQIQFALERGIP-AISAVM 520 (870)
Q Consensus 447 gA~~Yid~L~~~Lp~i~~g-~~~~~VLDIGCGtG~~a~~L----a~r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~ 520 (870)
+...|+..|.+++...... ...-++||||+|...+-..| ...+++|.|+++..+..|+....+..++. .+..+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 3456888888877653221 12468999999998543333 34499999999999999986665552444 222222
Q ss_pred --Ccc----cCCCCCCceeEEEecccccccccChHHHHH
Q 002884 521 --GTK----RLQFPRNVFDLVHCARCRVPWHIDGGKLLL 553 (870)
Q Consensus 521 --dae----~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~ 553 (870)
... .+-.+.+.||+.+|+. +|+.....+..
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNP---PFy~s~~e~~~ 196 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNP---PFYSSQEEAEA 196 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE--------SS------
T ss_pred cCCccccchhhhcccceeeEEecCC---ccccChhhhcc
Confidence 111 1223356899999985 55555444433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.038 Score=59.35 Aligned_cols=96 Identities=19% Similarity=0.353 Sum_probs=65.7
Q ss_pred ccccccccchhHHhhhcCC----CeEEEEeccCC-CCCChhHHHhhC------ccceeccccccccCCC---Cccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL----QVWVMNVVNVN-SPDTLPIIYERG------LFGIYHDWCESFSTYP---RSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~-~~~tl~~i~eRG------lig~~h~wce~f~tyP---rtyDllHa 789 (870)
.||.+|||.|.--==|++. ++-|| .-| +|+.+.++-++- .-...+|.|..=..+| .+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 6899999999654333322 12222 222 223333333322 4566778777655554 89999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
..+||.... -.+..+|-.+-|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 999998764 457789999999999999999997
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.029 Score=59.14 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=60.7
Q ss_pred ccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHHHhhC-------ccceeccccccccCCC-Cccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPIIYERG-------LFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i~eRG-------lig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
.||.+|||+|.-=-++-..+. -|.-+=|. +++-.++-.+= +--..|.-.|.++.-+ -+||.|-+--++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn--~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL- 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPN--EKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL- 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCc--HHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-
Confidence 479999999965555544433 33333332 23333332221 2335667778888776 799998773322
Q ss_pred cccCCcC---hhhHHHhhhhcccCCcEEEEecCh
Q 002884 795 QLKNRCK---LVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 795 ~~~~rc~---~~~vl~EmDRILRPgG~~iird~~ 825 (870)
|+ ...+|-|+-|||||||.+||-..+
T Consensus 156 -----CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 156 -----CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred -----eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44 447999999999999999998543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.039 Score=61.58 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=57.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCcc------cee-ccc-cccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLF------GIY-HDW-CESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGli------g~~-h~w-ce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|.+.+. +|+-+|-. ++|.+..+|.-- +.. ..| +..+...+.+||+|=|.+++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999998864 67777765 788777766310 011 111 12223346899999887777
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLI 820 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~i 820 (870)
-++... .+..++..+.++ .+||.+|
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 654331 223455555554 4555544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.059 Score=59.75 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=73.7
Q ss_pred cccccccccccchhHHhhhcC----CCeEEEEeccCCCC--CChhHHH-hhCccc---ee-ccccccccCCCCccchhhh
Q 002884 721 NVRNVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSP--DTLPIIY-ERGLFG---IY-HDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~--~tl~~i~-eRGlig---~~-h~wce~f~tyPrtyDllHa 789 (870)
.-+.|+|+|||-|++.+.+.- .+..+.|+=--... .....+. +.||-. +. +|..+. ......||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEEEE
Confidence 457899999998877555432 12233333211111 1112221 244422 21 244332 111268999888
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh---HHH-H-HHHHHcCCceEEEeecCCCc---eEEEEEeCC
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA---VTE-V-ENFLKSLHWEILFAFSKDQE---GVLSAQKGN 860 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~---~~~-~-~~~~~~l~W~~~~~~~~~~e---~iL~~~K~~ 860 (870)
.-|.-. ..-....+|..+-|.|||||++++|---.. +-. + ...++ .|++....+-.++ -+++++|.-
T Consensus 202 ~ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 AALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred eccccc--ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEeec
Confidence 622111 223556899999999999999999952111 100 1 11122 8888777665543 489999964
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.45 Score=52.25 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cE-EEEcCcccCCC--CCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AI-SAVMGTKRLQF--PRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~-~~v~dae~LPf--pd~SFDlV 535 (870)
..++.+||+-|.|+|+++.++++. +++..|+-..-...|...+ ++.|++ ++ +.+.|.....| .+..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeecccCCccccccccceE
Confidence 467999999999999999888874 8999999665444444333 334554 22 33334444444 36789999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.-. +.+..++--++.+||-+|.-+++
T Consensus 182 FLDl------PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 182 FLDL------PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred EEcC------CChhhhhhhhHHHhhhcCceEEe
Confidence 8742 35567777777899998854444
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.18 Score=56.12 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-Cc-------E---
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PA-------I--- 516 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~-------~--- 516 (870)
..++.|..++|.....+...+||--|||.|+++..|+.. .+-|-++|-.|+--.. ++..... ++ +
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~--FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS--FILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH--HHHHhhccCCcEEEEeeeecc
Confidence 356667777766544455678999999999999999865 6666688877764332 3331100 00 0
Q ss_pred -----------------------------EEEc-Cc--ccCC--CCCCceeEEEecccccccccChHHHHHHHHhhcCCC
Q 002884 517 -----------------------------SAVM-GT--KRLQ--FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPG 562 (870)
Q Consensus 517 -----------------------------~~v~-da--e~LP--fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPG 562 (870)
+.++ |+ +-.+ -..++||+|+..+ .+.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCC
Confidence 0000 00 0001 1124699998753 2433344578899999999999
Q ss_pred cEEEEEECCCcC
Q 002884 563 GYFVWSATPVYQ 574 (870)
Q Consensus 563 G~Lv~S~~p~~~ 574 (870)
|+++=.+|..|.
T Consensus 290 GvWiNlGPLlYH 301 (369)
T KOG2798|consen 290 GVWINLGPLLYH 301 (369)
T ss_pred cEEEeccceeee
Confidence 999966555443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.053 Score=55.22 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC----CCcEEE-EcC--cccCCCCCCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG----IPAISA-VMG--TKRLQFPRNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg----l~~~~~-v~d--ae~LPfpd~SFDl 534 (870)
.+++||++|.|--.++..|.. ..|...|-....+... +....++ +..... ... ..........||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 367899999996555554443 2677777766544332 2222222 111100 000 1112233568999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+|+.| +.+.+....++..|.+.|+|.|.-++..|
T Consensus 107 IlaADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 999998 44555568899999999999999887744
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.035 Score=61.78 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=57.2
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCCCChhHHHh------hCc----cceeccccccc-cCC-CCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSPDTLPIIYE------RGL----FGIYHDWCESF-STY-PRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~~tl~~i~e------RGl----ig~~h~wce~f-~ty-PrtyDll 787 (870)
.-++||++|+|.|+.+..|++.+ |.-+-+|.+|.. .+.+..+ .|+ +-++++-+-.| ... ++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46889999999999999998874 533334444431 1111111 121 23333222212 233 4789998
Q ss_pred hhhcccccccCCcC--hhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADHLFSQLKNRCK--LVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~lfS~~~~rc~--~~~vl~EmDRILRPgG~~iir 822 (870)
-++. +........ -...+..+-|+|+|||.+++.
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 7743 221111000 125678899999999999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.13 Score=54.72 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred cccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCc-----cceeccccccccCCCCccchhhh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGL-----FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGl-----ig~~h~wce~f~tyPrtyDllHa 789 (870)
|.-...|+|.|+|||.|---+.|..+ |. --|.-+|++ .+|.-+..|+. .|-++.||-. +..|||-|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPTDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cccchhhh
Confidence 44456899999999999999999877 44 224566776 89999999984 5778889864 56899999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecC--hh--hHHHHHHHHHcCCceEEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE--PS--AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~--~~--~~~~~~~~~~~l~W~~~~ 844 (870)
+-+|--+..-- .+|--+=--|+|||++-+.-+ .+ ...-|+.+++..-|...+
T Consensus 99 NAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 99 NAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred hhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 99998664322 234444446899999999843 32 257788888888887654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.038 Score=60.06 Aligned_cols=93 Identities=14% Similarity=0.313 Sum_probs=64.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh---------Cc---cceeccccccccCCCCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER---------GL---FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR---------Gl---ig~~h~wce~f~tyPrtyDllHa 789 (870)
|+|||+|||.|-....|+..+- +|+-+|.. ..+.++.+. ++ +-..|.--|.+-.. ||.|-|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~---fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGK---FDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccc---cceeee
Confidence 6699999999999999999885 66777765 455444433 21 21223222332222 999988
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.-++-++++ +..++-=+=+.|+|||.++|++-
T Consensus 165 sevleHV~d---p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 165 SEVLEHVKD---PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHHhC---HHHHHHHHHHHhCCCCceEeeeh
Confidence 777776663 56678888899999999999963
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.15 Score=49.11 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred EEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 470 VSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
++||||||.|.++..++.. +|+++|.++.+...++... ...+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~-~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV-KLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH-HHcCCC
Confidence 4899999999998887754 5999999999887766443 333443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.037 Score=50.96 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=37.5
Q ss_pred EEECCCCchhHHHHhcC-------CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--ccCC-CCCCceeEEEeccc
Q 002884 472 LDVGCGVASFGGYLFER-------DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--KRLQ-FPRNVFDLVHCARC 540 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r-------~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e~LP-fpd~SFDlV~Ss~~ 540 (870)
|+||+..|..+..|++. .++++|..+. ...++ +..++.++. .+.++.+. ..++ ++..+||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877766652 5899999884 11111 223323332 34444442 2222 2357899999852
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-|-.......|..+.+.|+|||++++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 332234467888899999999999874
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.23 Score=55.99 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc---Cccc
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM---GTKR 524 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---dae~ 524 (870)
+.++...+.+ ...+|||+|.|.|.-+.++-.. .++.++.+|. +...--..+..-......... ...+
T Consensus 103 ~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 103 DELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhc
Confidence 3344444443 3567999999998655444432 6677777774 322222222222111100111 1245
Q ss_pred CCCC-CCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 525 LQFP-RNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 525 LPfp-d~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++++ ...|++|+...-+++-... ....+..+..+|.|||.|++.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 5655 3568888765433332211 134788899999999999998
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.094 Score=62.31 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=68.9
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-------------Cccceeccccccc-cCCCCccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-------------GLFGIYHDWCESF-STYPRSYD 785 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-------------Glig~~h~wce~f-~tyPrtyD 785 (870)
+-++|||+|+|.|+.+..+.+.+- |-.|+-++-. ..+.++.+. .-+-+++.-...+ ...++.||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 457899999999999998887642 1233333332 344444331 1122333222222 23468999
Q ss_pred hhhhhcccccccCC-cC--hhhHHHhhhhcccCCcEEEEec-----ChhhHHHHHHHHHcCCceE
Q 002884 786 LLHADHLFSQLKNR-CK--LVPVMAEVDRIVRPGGKLIVRD-----EPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 786 llHa~~lfS~~~~r-c~--~~~vl~EmDRILRPgG~~iird-----~~~~~~~~~~~~~~l~W~~ 842 (870)
+|-+|- ....... .. -...+-.+-|+|+|||.+++.. ..+....+...+++....+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998762 1111110 01 1246778899999999999853 2344556666677665543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.054 Score=59.51 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=69.9
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC--Cccchhhhhccccccc-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP--RSYDLLHADHLFSQLK- 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP--rtyDllHa~~lfS~~~- 797 (870)
..|||+|||.|.|+.++..+ +- .+|+-+|.. ..+..+.++ +. -+.-.+..+..++ ++||+|=++-=|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~-~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LP-EAEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-Cc-CCEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 46999999999998888654 11 244555544 566655543 21 1122333344443 7899987766665321
Q ss_pred ----C--C---------c-ChhhHHHhhhhcccCCcEEEEecCh--hh-----HHHHHHHHHcCCceE
Q 002884 798 ----N--R---------C-KLVPVMAEVDRIVRPGGKLIVRDEP--SA-----VTEVENFLKSLHWEI 842 (870)
Q Consensus 798 ----~--r---------c-~~~~vl~EmDRILRPgG~~iird~~--~~-----~~~~~~~~~~l~W~~ 842 (870)
. + | .+...|..+-++|.|+|.+++.=.. .+ ..+-+.+++.-....
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1 1 1 2467889999999999988876211 11 355666666555543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.3 Score=55.23 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
+++.+|+=+|+| .|..+..+++ ++|+++|.++. ..++|++.|........+...+.--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 568899999988 2356666665 49999999997 445667776543322222222221122499998741
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. ...+....+.||+||.+++.+.+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 57788899999999999998644
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.11 Score=55.27 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=81.9
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhhCccc-eec-cccccccCCCCccchhhhhcccc--
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYERGLFG-IYH-DWCESFSTYPRSYDLLHADHLFS-- 794 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eRGlig-~~h-~wce~f~tyPrtyDllHa~~lfS-- 794 (870)
.-+-|||+|||+|--|+.|.+.+ +|| =+|.+ .+|.++.+|-+-| +++ |..|.+++=|-|||-+-+.+-.-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 34569999999999999999986 465 35654 8999999977764 334 89999888899999743322111
Q ss_pred -cccCCcChh-----hHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE
Q 002884 795 -QLKNRCKLV-----PVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 795 -~~~~rc~~~-----~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~ 842 (870)
+-.+.|... ..+--+..+|.+|+..++.=-.+....++.|...-+|.-
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG 179 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence 011223322 335558899999999999966666666666666666654
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.5 Score=45.88 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCc-hhHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC---CCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVA-SFGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP---RNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG-~~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp---d~SFDlV~Ss~~ 540 (870)
.+++||-||=..- +++..|.. ++|+.+|++...+..-. +.|.+.|++......+ .+-|+| -+.||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~D-lR~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYD-LRDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE----TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEec-ccccCCHHHhcCCCEEEeCC-
Confidence 4789999997665 35555543 39999999999887655 6888889985555544 344544 47899999974
Q ss_pred ccccccCh-HHHHHHHHhhcCCCc-EEEEE
Q 002884 541 RVPWHIDG-GKLLLELNRVLRPGG-YFVWS 568 (870)
Q Consensus 541 alhw~~D~-~~vL~Ei~RVLKPGG-~Lv~S 568 (870)
+|.... ..++......||.-| ..+++
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 454433 567888888998766 44444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.47 Score=51.05 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=74.1
Q ss_pred CeeecCCCCcc-ccccHHHHHHHHHHHhhhhhcC--CCCCEEEEECCCCchh----HHHHhcCCEEEEeCChhhHHHHHH
Q 002884 433 EIITFPGGGTQ-FIHGALHYIDFIQQAVPKIAWG--KYTRVSLDVGCGVASF----GGYLFERDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 433 e~~~FPgggt~-F~~gA~~Yid~L~~~Lp~i~~g--~~~~~VLDIGCGtG~~----a~~La~r~VtgVDiSp~ml~~A~v 505 (870)
.+|.||.|--. -..+...|+.+|++++...... ++..++||||.|.--+ +......+.+|.|+++..+..|+.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 45777776432 2356678999999988654322 2456899999886532 222223389999999998888876
Q ss_pred HHHHHcCCCcE-E-EEcCccc--CC---CCCCceeEEEecccccccccChHHHHHHHHhhc
Q 002884 506 QFALERGIPAI-S-AVMGTKR--LQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVL 559 (870)
Q Consensus 506 q~A~ergl~~~-~-~v~dae~--LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVL 559 (870)
-....-++... . ....... ++ -..+.||++.|+. +||.....+..--.|-+
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP---PFh~s~~da~~gsqrk~ 178 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP---PFHDSAADARAGSQRKR 178 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCC---CcchhHHHHHhcccCCc
Confidence 55554344321 1 1111211 11 2257899999985 45555554444433433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.66 E-value=1 Score=52.10 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCCchhH---HHHh-cC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC---CCCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFG---GYLF-ER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ---FPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a---~~La-~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP---fpd~SFDlV 535 (870)
..++.+|||+.+..|.=+ +.|. .. -|++.|.+..-+..-. ..+.+.|+.+...+. +...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 467899999999999533 3333 33 7888998877554433 556677877655544 344444 555 89999
Q ss_pred E----ecccccccccC-----------------hHHHHHHHHhhcCCCcEEEEEECCCc
Q 002884 536 H----CARCRVPWHID-----------------GGKLLLELNRVLRPGGYFVWSATPVY 573 (870)
Q Consensus 536 ~----Ss~~alhw~~D-----------------~~~vL~Ei~RVLKPGG~Lv~S~~p~~ 573 (870)
. |+...+.+-+. ...+|..+..+++|||+|+.|+..+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 7 33211222111 13678888899999999999965443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.63 Score=49.07 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCc-eeEEEeccccccc
Q 002884 471 SLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNV-FDLVHCARCRVPW 544 (870)
Q Consensus 471 VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~S-FDlV~Ss~~alhw 544 (870)
|.||||--|.+..+|.+. .++++|+++.-+..|+...+. .|+ ..+....++.--+++.+. .|.|+.+. +.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG--MGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG--MGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--GGG---EEEEEE--E-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCCCCCCCEEEEec--CCH
Confidence 689999999999999886 799999999999988865554 453 344444443222344433 78887653 221
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.-....|......++....|++.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEe
Confidence 11245666666777777788887
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.68 Score=46.23 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=53.9
Q ss_pred CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCC-C-CCCceeEEEecccccccccC-----h---HHHHHHHHh
Q 002884 489 DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQ-F-PRNVFDLVHCARCRVPWHID-----G---GKLLLELNR 557 (870)
Q Consensus 489 ~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LP-f-pd~SFDlV~Ss~~alhw~~D-----~---~~vL~Ei~R 557 (870)
+|+|.||-+..+...+.+.........+.++.+. +.+. + +.+.+|+|+.|+..++-.+. + -.+|..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4899999998888777555443333345566553 4443 2 33589999998665553211 1 378999999
Q ss_pred hcCCCcEEEEEECCCcCch
Q 002884 558 VLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 558 VLKPGG~Lv~S~~p~~~tL 576 (870)
+|+|||++.+..-++...-
T Consensus 81 lL~~gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGG 99 (140)
T ss_dssp HEEEEEEEEEEE--STCHH
T ss_pred hhccCCEEEEEEeCCCCCC
Confidence 9999999999865555433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.21 Score=52.71 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=84.1
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhH----HHhhCcc----ceeccccccc-------cCCCCccch
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPI----IYERGLF----GIYHDWCESF-------STYPRSYDL 786 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~----i~eRGli----g~~h~wce~f-------~tyPrtyDl 786 (870)
.||.+|+|+|--|+++... |- +---|.|-. +.+.- |.+.|+. .+.-|.+... ..++.+||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 5999999999988888654 42 123466654 22222 4466753 2333444442 235689999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------------hhHHHHHHHHHcCC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------------SAVTEVENFLKSLH 839 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------------~~~~~~~~~~~~l~ 839 (870)
|-|.+++-...-.| .+-++.+.-|+|+|||.|++=.+- --++.|..++.+-.
T Consensus 106 i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 87766664332222 356899999999999999987421 11577888888877
Q ss_pred ceEEEe-ecCCCceEEEEEe
Q 002884 840 WEILFA-FSKDQEGVLSAQK 858 (870)
Q Consensus 840 W~~~~~-~~~~~e~iL~~~K 858 (870)
+..... +=-....+||.+|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 776432 1123467888887
|
The function of this family is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.097 Score=56.43 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred cccccccccchhHHhhhcCC----CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCC--CCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTY--PRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~ty--PrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.|+.+++.+ +. .+|.-++-. ..+.++. +.+.. ++-++..|..+ +.+||+|=++==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 36999999999999988653 21 245555543 4444443 23322 23233334333 468999866655542
Q ss_pred cc-----CC---cChh-hHHHhhhhcccCCcEEEEe
Q 002884 796 LK-----NR---CKLV-PVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~-----~r---c~~~-~vl~EmDRILRPgG~~iir 822 (870)
.. .| ..+. .++...-|+||||++ |+=
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 21 22 2333 366667789999887 443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.5 Score=46.67 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhhhhc--CCCCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHH-HcCCC-cEEE
Q 002884 449 LHYIDFIQQAVPKIAW--GKYTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFAL-ERGIP-AISA 518 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~--g~~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~-ergl~-~~~~ 518 (870)
..|...+...+..+.. +....+|+=||||.=-++..+.. ..|+++|+++.....++. ... ..++. .+.+
T Consensus 100 ~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~-lv~~~~~L~~~m~f 178 (276)
T PF03059_consen 100 PNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR-LVASDLGLSKRMSF 178 (276)
T ss_dssp HHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH-HHH---HH-SSEEE
T ss_pred HHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhcccccCCeEE
Confidence 3455554444332221 22346999999997655544432 258899999998777753 323 22222 2444
Q ss_pred EcC-cccCCCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 519 VMG-TKRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 519 v~d-ae~LPfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.+ ....+..-..||+|+.+. ++.-. .+-..+|..+.+.++||..+++-.
T Consensus 179 ~~~d~~~~~~dl~~~DvV~lAa-lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 179 ITADVLDVTYDLKEYDVVFLAA-LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EES-GGGG-GG----SEEEE-T-T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EecchhccccccccCCEEEEhh-hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 443 344444446799999863 23322 245899999999999999999863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.76 Score=54.36 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCEEEEECCCCchhHHHHhc------C--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFE------R--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~------r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
..+|+-+|+|.|-+....++ + ++++++-.|..+.--+...-..-+-...++-.|+..++-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 45788999999976544432 2 789999999865433221111112223344456677775568899999853
Q ss_pred cccccccC-h-HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHID-G-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D-~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. -.|-.+ + +.+|..+-+.|||+|+.+=+
T Consensus 448 L-GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 L-GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred h-ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 2 223222 3 89999999999999988843
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.18 Score=55.56 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=74.9
Q ss_pred ccccccccccccccchhHHhhhcC----CC-eEEEEeccCCCCCChhHHHhhCcc---ceec-cccccccCC-----CCc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKD----LQ-VWVMNVVNVNSPDTLPIIYERGLF---GIYH-DWCESFSTY-----PRS 783 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~----~~-vwvmNvvp~~~~~tl~~i~eRGli---g~~h-~wce~f~ty-----Prt 783 (870)
.-..-++||++|+++|..+.+|+. .+ |+.+=.-|....-..+.+-.-|+- -+++ +-.+.+..+ +.+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 334578999999999999888864 23 333222221111233344555653 2333 233333332 357
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-------------h---hHHHHHHHHHcCCceEEEeec
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-------------S---AVTEVENFLKSLHWEILFAFS 847 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-------------~---~~~~~~~~~~~l~W~~~~~~~ 847 (870)
||+|=.|+= .-....++...-++|||||.+|+.+-. . +.+..+.+...=+++..+.
T Consensus 195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll-- 266 (278)
T PLN02476 195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV-- 266 (278)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE--
Confidence 998655432 123456777778999999999887421 0 1222233444445665543
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.-..++++++|.
T Consensus 267 PigDGl~i~~K~ 278 (278)
T PLN02476 267 PIGDGMTICRKR 278 (278)
T ss_pred EeCCeeEEEEEC
Confidence 224789999884
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.12 Score=52.65 Aligned_cols=98 Identities=23% Similarity=0.363 Sum_probs=52.6
Q ss_pred cccccccccccch--hHHhhhcCCCeEEEEeccCCCC---CChhHHHhh------C-ccceeccccccc--cCC-CCccc
Q 002884 721 NVRNVMDMRAVYG--GFAAALKDLQVWVMNVVNVNSP---DTLPIIYER------G-LFGIYHDWCESF--STY-PRSYD 785 (870)
Q Consensus 721 ~~RnvmDm~ag~G--gfaaaL~~~~vwvmNvvp~~~~---~tl~~i~eR------G-lig~~h~wce~f--~ty-PrtyD 785 (870)
.-++||.+|||.| |.+++... + ...|+-+|.+ ..+..+.++ + +-....+|.+.. ... ++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3468999999998 55555551 1 1122223333 233334443 2 233445898854 222 47899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+|.|..++=.. -..+.++-=+.++|.|+|.+|+..+
T Consensus 122 ~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99996665432 1345677778999999999888743
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.38 Score=51.83 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=81.8
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHH----HhhCc----cceec-cccccccCCC-Cccch-hhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPII----YERGL----FGIYH-DWCESFSTYP-RSYDL-LHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i----~eRGl----ig~~h-~wce~f~tyP-rtyDl-lHa~ 790 (870)
-+|||...|.|=+|..-.+++- -|..| .+| ||-|.++ +-||| |-+++ |--|...+|+ .+||. ||--
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITV-EKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEE-eeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 3599999999999998888865 22221 111 1111110 22333 55566 5667778887 78998 6766
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEE-ec-------ChhhHHHHHHHHHcCCceEEEeecCCCceE-EEEEeC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV-RD-------EPSAVTEVENFLKSLHWEILFAFSKDQEGV-LSAQKG 859 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii-rd-------~~~~~~~~~~~~~~l~W~~~~~~~~~~e~i-L~~~K~ 859 (870)
-=||+-..--+. ..--|+.|||||||-++= .. -.++...|..-+++....+... ..+.+ ++|+|+
T Consensus 214 PRfS~AgeLYse-efY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~---~~~~~gv~A~k~ 287 (287)
T COG2521 214 PRFSLAGELYSE-EFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK---VREALGVVAVKP 287 (287)
T ss_pred CccchhhhHhHH-HHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee---ehhccceEEecC
Confidence 666654432222 466799999999998763 22 2356778888888888875432 13444 677764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.087 Score=55.42 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=77.1
Q ss_pred ccccccccccccccchhHHhhhcC----C-CeEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKD----L-QVWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRS 783 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~----~-~vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----Prt 783 (870)
...+-++||.+|+++|=-|.+|+. . .|+++-+-|....-....+..-|+ |-+++ +..+.+..+ +.+
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 345678999999988876666653 2 456655544333333444555676 44444 355554444 257
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------hhHHHHHHHHHcCCceEEEeec
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------SAVTEVENFLKSLHWEILFAFS 847 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------~~~~~~~~~~~~l~W~~~~~~~ 847 (870)
||+|=.|+-= -....++..+-++|||||.+|+.+-. .+.+..+.+..-=+.+..+.
T Consensus 122 fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll-- 193 (205)
T PF01596_consen 122 FDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL-- 193 (205)
T ss_dssp EEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE--
T ss_pred eeEEEEcccc------cchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE--
Confidence 9997554421 23334666666999999999998532 11223333444345554442
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.-.++|++++|+
T Consensus 194 pigdGl~l~~K~ 205 (205)
T PF01596_consen 194 PIGDGLTLARKR 205 (205)
T ss_dssp CSTTEEEEEEE-
T ss_pred EeCCeeEEEEEC
Confidence 345789999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.32 Score=50.86 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=57.9
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHc----CCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALER----GIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~er----gl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+.|+|+|+|.++...+.. +|++++.+|.-. +.|.+. |..+...+. ++....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 68999999999776655543 899999999733 233332 444444444 4556666 457999995210
Q ss_pred ccc-ccChHHHHHHHHhhcCCCcEEE
Q 002884 542 VPW-HIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 542 lhw-~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.-. ......++..+...||-+|.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 001 1223567777777888888776
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.3 Score=56.86 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=67.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC--C-CCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST--Y-PRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t--y-PrtyDllHa~~ 791 (870)
..|||+|||.|.|+.+|+... ..|+-+|.. ..+..+.+ .|+ +-+++ |+-+.+.. + +.+||+|-++-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 359999999999999998775 355666655 55554443 244 23333 45443322 3 36788875421
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.|..+..++.-+-+ |.|++.++++=+...+.+--..+..-.|++..
T Consensus 376 ------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 376 ------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKR 421 (443)
T ss_pred ------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEE
Confidence 23334456655555 59999999995555544433344344687753
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.14 Score=51.45 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCC-Cccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
-..|||+|||.|.++..|+++. -.|+.++.. ..+..+.++- =+-+++.-...+. ++ ..||+|=++=-|..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCccc
Confidence 3469999999999999999874 245555544 4555554441 1334443223322 33 35777644332321
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .-.+.. +++.. .+.++|+|++..
T Consensus 90 ~--~~~i~~-~l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 90 S--TPILFK-LLEEP-PAFRDAVLMVQK 113 (169)
T ss_pred H--HHHHHH-HHhcC-CCcceEEEEEEH
Confidence 1 112222 33332 256999999985
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.78 Score=48.58 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChh
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPK 498 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ 498 (870)
.-.+.|||||.|.+...|... -|+|++|--.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 357899999999988888764 7899887544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.14 Score=50.58 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=62.8
Q ss_pred cccccccccchh-HHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCc
Q 002884 723 RNVMDMRAVYGG-FAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 723 RnvmDm~ag~Gg-faaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc 800 (870)
+-|+|+|||+|. +|..|.+.+. .|+-+|.. ..+.-+.++|+-.+..|+.++-.-.=+-+|||-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 349999999996 9999999987 55666654 6677888999888888887652221245555544
Q ss_pred ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
||-+.++...+.++++++.=.+.+.
T Consensus 84 --------------------irpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 84 --------------------IRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred --------------------eCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2334566677777777777777665
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.78 E-value=2.1 Score=44.92 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=55.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE--EcCc---c--cCCCCCCcee
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISA--VMGT---K--RLQFPRNVFD 533 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~--v~da---e--~LPfpd~SFD 533 (870)
+++.+|||+||..|+++....++ -|.|||+-... .-.|...... +.+. . .-.+|+...|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence 56899999999999998877664 68999874421 1122211110 1110 0 0124678899
Q ss_pred EEEecccccccc-----cCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWH-----IDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~-----~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+|-. .+-. .|. ..+|.-....|+|+|.|+.-.
T Consensus 139 vVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999853 1211 111 234444556789999999873
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.12 Score=49.43 Aligned_cols=37 Identities=22% Similarity=0.593 Sum_probs=27.9
Q ss_pred ceeEEEecccccccc-----cC-hHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCRVPWH-----ID-GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~alhw~-----~D-~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||+|+|- ++.-|+ ++ ...+|+.+++.|+|||+|++.
T Consensus 1 ~yDvilcl-SVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCL-SVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEE-S-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEE-EeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 38999995 344443 22 267999999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.2 Score=44.62 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=73.5
Q ss_pred cccccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC----CChhHHHhh-Cccc--eeccc-cccccCCCCccc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP----DTLPIIYER-GLFG--IYHDW-CESFSTYPRSYD 785 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~----~tl~~i~eR-Glig--~~h~w-ce~f~tyPrtyD 785 (870)
|.+.-+.+ ++|+|||+|+.+-.+.-. +. .-|..++.. ..+..+.+| |+-. ++..+ =+.+..+| +||
T Consensus 30 L~~~~g~~--l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 30 LRPRPGDR--LWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred hCCCCCCE--EEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 44444544 999999999988766511 22 334455543 333444443 3322 22222 23333444 555
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCc-eEE
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHW-EIL 843 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W-~~~ 843 (870)
. +|=... -.++.||.-...-|||||.+|+. -+.+....+-..++.+.| ++.
T Consensus 105 a-----iFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 105 A-----IFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred E-----EEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 4 443333 57888999999999999999998 467778888888999999 543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.45 E-value=1.5 Score=47.65 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC----CCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP----RNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp----d~SFDlV 535 (870)
-+++.+||=||++.|.......+- -|+++++++..-.. ....|.+|- +++-+..+.+.|.. -.-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd-L~nmAkkRt--NiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD-LINMAKKRT--NIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH-HHHHhhccC--CceeeeccCCCchheeeeeeeEEEE
Confidence 357899999999999766666542 78999998864322 334555542 33333333344422 2468888
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++-. .-......+...+.-.||+||.|+++
T Consensus 231 FaDv---aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 231 FADV---AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eccC---CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 8752 22222366778889999999999998
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=3.3 Score=46.79 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-----cCCCCC-CceeEE
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-----RLQFPR-NVFDLV 535 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-----~LPfpd-~SFDlV 535 (870)
.+.+||=+|||. |.++..+++. .|+++|.++.- .++|++.+........... .+.... ..||+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 344999999997 7666555553 89999999984 4455553321111111111 011122 369999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
+=.-. ...++..+.+++||||.+++.+.+...
T Consensus 243 ie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG-------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC-------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86422 345899999999999999998655444
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.23 Score=53.27 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=66.2
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hhCccceeccccccccCCC-Cccchhhhhccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
..-.++|+||+.|-.+..|+..+| =-++-+|.. .+++-.. +-+++-.|-.--|-|..|- +++|||-. .|=-+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis-SlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS-SLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh-hhhhh
Confidence 356799999999999999999987 122223433 4444433 3578888888889999995 99999754 11112
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
|.+ +++--|+-.--+|+|.|.||-+
T Consensus 149 W~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhc--cCchHHHHHHHhcCCCccchhH
Confidence 332 3444566666788999988866
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.80 E-value=2.4 Score=45.43 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF 527 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf 527 (870)
+..++.++.. +.++.||||--|.+..+|... .+++.|+++.-+..|...+......+......++.-.++
T Consensus 7 L~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 7 LTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 4445555543 556999999999999999875 789999999999888766666555555555555544445
Q ss_pred CCC-ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 528 PRN-VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 528 pd~-SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..+ .+|+|+... +.- .-....|.+-...|+-=-.|++.
T Consensus 81 ~~~d~~d~ivIAG--MGG-~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAG--MGG-TLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeC--CcH-HHHHHHHHHhhhhhcCcceEEEC
Confidence 433 799988653 210 01145566666666544466664
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.36 Score=56.57 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=48.5
Q ss_pred cccccccccchhHHhhhc------CCCeEEEEeccCCC-C---CChh-HHHhhCccceeccccccccCC--CCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALK------DLQVWVMNVVNVNS-P---DTLP-IIYERGLFGIYHDWCESFSTY--PRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~------~~~vwvmNvvp~~~-~---~tl~-~i~eRGlig~~h~wce~f~ty--PrtyDllHa 789 (870)
..|||+|||.|....+-+ ...+ -|..++. + -+|. .|...|+-+.++......... |.-.|+|-+
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~---~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAV---KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCES---EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCe---EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 469999999999853221 1122 2223332 2 2332 234445433333333333333 678888654
Q ss_pred hccc-ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 790 DHLF-SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 790 ~~lf-S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
-++ |++-+ -.+..+|.-.||.|+|||.+|=+
T Consensus 265 -ElLGsfg~n-El~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 265 -ELLGSFGDN-ELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp ----BTTBTT-TSHHHHHHHGGGGEEEEEEEESS
T ss_pred -eccCCcccc-ccCHHHHHHHHhhcCCCCEEeCc
Confidence 222 22212 24456899999999999988733
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=2.9 Score=49.90 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCCc-hhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc---------cC-------
Q 002884 466 KYTRVSLDVGCGVA-SFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK---------RL------- 525 (870)
Q Consensus 466 ~~~~~VLDIGCGtG-~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae---------~L------- 525 (870)
.++.+||=+|||.- ..+...++ ..|+++|..+.- .+.++..|........... .+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r-----le~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV-----AEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 46889999999984 44444433 379999998873 3445555543211111000 00
Q ss_pred ---CCCC--CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 526 ---QFPR--NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 526 ---Pfpd--~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+.. ..+|+|+..- ..+-...+..+..++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0111 3599999852 232222233446999999999999987644
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.51 Score=54.55 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=67.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCC---Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYP---RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyP---rtyDllHa~~ 791 (870)
..|||++||+|.|+..|++..- .|+-++.. ..+..+.+ .|+ +-+++ |+.+.+..++ .+||+|-.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 3599999999999999987632 34445543 33333322 343 33444 4443333332 4688765411
Q ss_pred ccccccCCcC-hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLKNRCK-LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~~rc~-~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.|-. ...+|-.+.+ |+|+|.++++-+...+..--..+..-.|++..
T Consensus 371 ------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 371 ------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 2222 2345555555 89999999997777776666666666787653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.3 Score=49.63 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=36.3
Q ss_pred cCC-CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 778 STY-PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 778 ~ty-PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.| |++-|+|-|.|++-++.-+-. ..-|-|-.|+|||||++-+.-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEc
Confidence 445 799999999999987654323 358899999999999998883
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.92 E-value=0.39 Score=54.89 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=51.6
Q ss_pred ccccccccchhHHhhhcCCC---eEEEEeccCCCC-----CChhHHHhhCccceeccccccccCCC-Cccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-++|++||+|+...+..... +.=.|..+.... .--..+.++--+ +.+ |+-. .+|+ .|||.+-+.-+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~-~~~~-~~fedn~fd~v~~ld~~- 188 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVA-DFGK-MPFEDNTFDGVRFLEVV- 188 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehh-hhhc-CCCCccccCcEEEEeec-
Confidence 36699999999998876543 221122211110 011112222223 222 3333 2444 899986541111
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..--+...++.||-|+|+|||++|.-
T Consensus 189 --~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 189 --CHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --ccCCcHHHHHHHHhcccCCCceEEeH
Confidence 11135668999999999999999976
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=86.92 E-value=0.12 Score=54.66 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=46.4
Q ss_pred ccccccccchhHHhhhcCC--Ce-EEEEeccCCCC---CChhHHHhhCc--cceeccccccccCCC--Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QV-WVMNVVNVNSP---DTLPIIYERGL--FGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~v-wvmNvvp~~~~---~tl~~i~eRGl--ig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
.|||+|||+|=++|.|... ++ -|..| ..+.. .-...+...|+ +.+.|.= ....+| -.||.||..
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~v-E~~~~l~~~A~~~l~~~~~~nv~~~~gd--g~~g~~~~apfD~I~v~--- 148 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSV-ERDPELAERARRNLARLGIDNVEVVVGD--GSEGWPEEAPFDRIIVT--- 148 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEE-ESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG-SEEEEEES---
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEE-CccHHHHHHHHHHHHHhccCceeEEEcc--hhhccccCCCcCEEEEe---
Confidence 4999999999988888754 22 22222 21111 11122233354 2334421 223444 469999983
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
|....+-..+=+-|||||.+|+-
T Consensus 149 ------~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 ------AAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ------SBBSS--HHHHHTEEEEEEEEEE
T ss_pred ------eccchHHHHHHHhcCCCcEEEEE
Confidence 23334445556669999999974
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.56 E-value=4.2 Score=46.53 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhc-CCCCCEEEEECCCCchhHHHHhc----C----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-
Q 002884 451 YIDFIQQAVPKIAW-GKYTRVSLDVGCGVASFGGYLFE----R----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM- 520 (870)
Q Consensus 451 Yid~L~~~Lp~i~~-g~~~~~VLDIGCGtG~~a~~La~----r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~- 520 (870)
|......++|-+.. .+++.+|||+.+..|+=+..|.+ . .|++=|+++.-++.-..+. .....+......
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNH 216 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecc
Confidence 44445556655443 46889999999999986655554 2 5788888887554433222 222222221111
Q ss_pred CcccC---------CCCCCceeEEEec-cccc---c----------cccC----h----HHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GTKRL---------QFPRNVFDLVHCA-RCRV---P----------WHID----G----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 dae~L---------Pfpd~SFDlV~Ss-~~al---h----------w~~D----~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.... +.....||-|+|- .|.- + |... + -.+|..-.|+||+||.++.|+
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 11111 2334579999872 2211 1 1100 0 257888899999999999995
Q ss_pred CC
Q 002884 570 TP 571 (870)
Q Consensus 570 ~p 571 (870)
..
T Consensus 297 CS 298 (375)
T KOG2198|consen 297 CS 298 (375)
T ss_pred cC
Confidence 43
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=0.27 Score=51.46 Aligned_cols=125 Identities=8% Similarity=0.024 Sum_probs=60.6
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---h-hCc--cceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---E-RGL--FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---e-RGl--ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||++||+|.|+..++.+.. -.|+-++.. ..+..+. + -|+ +-+++ |+.+.+....+.||+|=++-=|-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 599999999999975443432 123333332 2222211 1 232 33444 44333322235689887654432
Q ss_pred ccCCcChhhHHHhh--hhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 796 LKNRCKLVPVMAEV--DRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 796 ~~~rc~~~~vl~Em--DRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.. ....++--+ -.+|.|+|.+|+.-.... .+-.+.. .|++.....-..-++.+.+|
T Consensus 133 --~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~~~--~~~~~~~--~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 133 --KG-LLEETINLLEDNGWLADEALIYVESEVEN--GLPTVPA--NWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred --CC-hHHHHHHHHHHCCCcCCCcEEEEEecCCC--CcccCCC--ccEEEEEecCCCEEEEEEEE
Confidence 11 112232222 356899999999854321 0001111 36654332223445666665
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.1 Score=49.90 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc--cceec-cccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL--FGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl--ig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||++||.|.|+..|+..+- .|+-+|.. ..+..+. ..|+ +-+++ |..+-....+..||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d---- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN---- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence 4699999999999999998753 56666654 4544432 3355 22333 2221111122468887764
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
-.|..+...++++=.-++|++.++++=....+.+--..+ -.|++..
T Consensus 248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l--~~y~~~~ 293 (315)
T PRK03522 248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL--PGYRIER 293 (315)
T ss_pred --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc--cCcEEEE
Confidence 234344334444444478999999996655543333333 2577653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.62 E-value=1.4 Score=48.55 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=78.7
Q ss_pred ccccccccchhHHhhhcCC-C---eEEEEeccCCC---CCChhHHHhhCccceecc--ccccccCCC---Cccchhhhhc
Q 002884 724 NVMDMRAVYGGFAAALKDL-Q---VWVMNVVNVNS---PDTLPIIYERGLFGIYHD--WCESFSTYP---RSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~---vwvmNvvp~~~---~~tl~~i~eRGlig~~h~--wce~f~tyP---rtyDllHa~~ 791 (870)
-++|+|||.|..+-+|..- + |...-+.++.- ..+.+...-.|-|++.|. =.+.+.+|| -+||+|-++-
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 4999999999998887643 2 33344443321 233444555678888885 456677887 7888875542
Q ss_pred --cccc-----------c--------cCCcC--hhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHH-HHcCCceE
Q 002884 792 --LFSQ-----------L--------KNRCK--LVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENF-LKSLHWEI 842 (870)
Q Consensus 792 --lfS~-----------~--------~~rc~--~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~-~~~l~W~~ 842 (870)
+|+. | ...|. +..++.=.-|.|+|||+++|.-. ......+... .+.--|.+
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~ 310 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKA 310 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchh
Confidence 2221 1 11122 22556667899999999999732 3333433333 33334544
Q ss_pred EEe-ecCCCceEEEEEe
Q 002884 843 LFA-FSKDQEGVLSAQK 858 (870)
Q Consensus 843 ~~~-~~~~~e~iL~~~K 858 (870)
.+. |-...+++++..+
T Consensus 311 ~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 311 AVVSDFAGRPRFVIIHR 327 (328)
T ss_pred heeecccCCcceEEEEe
Confidence 443 3335667766544
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.56 E-value=2.9 Score=47.61 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcCh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKL 802 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~ 802 (870)
..|||+||..|||.-.|.+++. .|+.+|....-+.+.+-|.+-.+-.---.+.+-++.+|+|-||-+ |..
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-------e~P 282 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-------EKP 282 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-------cCH
Confidence 4699999999999999999986 566677544444555555444443222222222577898887332 555
Q ss_pred hhHHHhhhhcccCC--cEEEEecCh------hh----HHHHHHHHH--cCCceEEEe--ecCCCceEEE
Q 002884 803 VPVMAEVDRIVRPG--GKLIVRDEP------SA----VTEVENFLK--SLHWEILFA--FSKDQEGVLS 855 (870)
Q Consensus 803 ~~vl~EmDRILRPg--G~~iird~~------~~----~~~~~~~~~--~l~W~~~~~--~~~~~e~iL~ 855 (870)
..++.=|-+-|.-| +.+||.-+. +. +..|...+. ++.+.+++. +|+..|.-+.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReEiTv~ 351 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREEVTVH 351 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCceEEEE
Confidence 66776677777666 578888322 11 233443332 334555544 6766565433
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.56 E-value=3.5 Score=45.67 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC--cccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG--TKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d--ae~LPfpd~SFDlV~Ss~ 539 (870)
++.+||-+|||. |.++..+++. .|++++.++. +.+++++.|....+.... ...+....+.||+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 477899999863 4444445442 5888888876 334566666533221111 011111123589998642
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ....+..+.++|+|||.+++.+
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 2357788899999999999874
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=85.48 E-value=0.32 Score=54.85 Aligned_cols=131 Identities=20% Similarity=0.375 Sum_probs=61.6
Q ss_pred HHHHHHhhcc-cccceeeeccccccccccccccccccchhHHhhhcCCCe---EEEEeccCCCCCChhHHHhhC------
Q 002884 696 FTRDYKHWRY-VVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQV---WVMNVVNVNSPDTLPIIYERG------ 765 (870)
Q Consensus 696 f~~dye~W~~-~V~~TY~~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~v---wvmNvvp~~~~~tl~~i~eRG------ 765 (870)
....+..|-+ .+-..|...+... ..-..||||+||-||=-.--...+| +..-+++ ..|.-+.+|=
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~~-~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~----~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQN-RPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE----ESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCCT-TTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H----HHHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHHHHHHHHHhhhcc-CCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH----HHHHHHHHHHHHhccc
Confidence 3456677855 3323343222111 1346799999999994433333333 2233322 2333333332
Q ss_pred ---------ccceec-ccc--ccc-cCC-C--Cccchhhhhcccccc---cCCcChhhHHHhhhhcccCCcEEEEe--cC
Q 002884 766 ---------LFGIYH-DWC--ESF-STY-P--RSYDLLHADHLFSQL---KNRCKLVPVMAEVDRIVRPGGKLIVR--DE 824 (870)
Q Consensus 766 ---------lig~~h-~wc--e~f-~ty-P--rtyDllHa~~lfS~~---~~rc~~~~vl~EmDRILRPgG~~iir--d~ 824 (870)
+....+ .=| +.+ ..| | +.||+|=| -|++- ...-....+|.-+-..|||||+||.+ |.
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccccccccchhheeccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 222222 211 111 123 2 59999755 23211 11123446888999999999999998 43
Q ss_pred hhhHHHHHH
Q 002884 825 PSAVTEVEN 833 (870)
Q Consensus 825 ~~~~~~~~~ 833 (870)
..++.+++.
T Consensus 190 ~~i~~~l~~ 198 (331)
T PF03291_consen 190 DEIVKRLRE 198 (331)
T ss_dssp HHHHCCHHC
T ss_pred HHHHHHHHh
Confidence 333333433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=85.26 E-value=0.83 Score=47.42 Aligned_cols=111 Identities=25% Similarity=0.417 Sum_probs=67.2
Q ss_pred ccccccccch--hHHhhhc--CCCeEEEEeccCCCC--CCh-hHHHhhCcc--ceeccccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYG--GFAAALK--DLQVWVMNVVNVNSP--DTL-PIIYERGLF--GIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~G--gfaaaL~--~~~vwvmNvvp~~~~--~tl-~~i~eRGli--g~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+++|+|+|-| |.--|+. +..|. ++..... +-| .++.+=||- -++|.-.|. ..++..||+|=|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~---LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----- 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVT---LVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----- 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEE---EEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEE---EEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-----
Confidence 5999998865 3333333 33332 2222222 333 245566774 344444444 448899999887
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC---hhhHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE---PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~---~~~~~~~~~~~~~l~W~~~~~ 845 (870)
.+-+.+..++--+-++|+|||.+++--- .+.+..++...+.+.++....
T Consensus 122 --RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 122 --RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp --ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred --ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 3446788777778899999999888743 345666677777777776543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=85.17 E-value=0.92 Score=58.30 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.7
Q ss_pred hhHHHhhhhcccCCcEEEEecChhhHHHHH-HHHHcCCceEE
Q 002884 803 VPVMAEVDRIVRPGGKLIVRDEPSAVTEVE-NFLKSLHWEIL 843 (870)
Q Consensus 803 ~~vl~EmDRILRPgG~~iird~~~~~~~~~-~~~~~l~W~~~ 843 (870)
..|+.+.-++|+|||++++-=-..--..|. .++.+..|+..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCee
Confidence 468889999999999999985555556777 57777766654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=0.79 Score=50.16 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=57.6
Q ss_pred ccccccccccccchhHHhhhcCCCeEEEEeccCCCC------CChhHHHhhCc----cceeccccccccCCCCccchhhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP------DTLPIIYERGL----FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~------~tl~~i~eRGl----ig~~h~wce~f~tyPrtyDllHa 789 (870)
...|+||=+|.|=||.++-+.+.+- -.-+|.+|.. .-||.+-. ++ +-++- |. ......+||+|=.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 5689999999999999999998873 1122333321 11333221 21 11111 21 1122478999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+|+ ....-.+.|+|+|||.++..-
T Consensus 146 Ds~~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQEPD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCCC--------hHHHHHHHHhcCCCcEEEECC
Confidence 88776 223456899999999999974
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=84.98 E-value=0.25 Score=52.60 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHH-----hhCccceec-cccccccCCCCccchhhhhcccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIY-----ERGLFGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~-----eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
....+||.|||.|=....|+-.-.=.+-+|... +..+..+. +.+-+|-+. .==+.|.+=+..||+|.+.=+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 466799999999999987765432111222211 13333444 233333332 22233333347999998866666
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhh----------------HHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------------VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------------~~~~~~~~~~l~W~~~~~ 845 (870)
++.+ -++...|.-.-.-|||+|++||-++... ...++.|+++=..++...
T Consensus 134 hLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 6554 3445566667778999999999854311 577888888888877654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=84.91 E-value=2.5 Score=46.09 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
...+|||||||.--++..+... .++|+||+..++.... .+....+++....+.+...- -+....|+++.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSD-PPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeecc-CCCCCcchhhHH
Confidence 4789999999999888766543 7999999998776554 34455566655556553222 245678998864
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.3 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=24.2
Q ss_pred hHHHhhhhcccCCcEEE-EecChhhHHHHHHHHHc
Q 002884 804 PVMAEVDRIVRPGGKLI-VRDEPSAVTEVENFLKS 837 (870)
Q Consensus 804 ~vl~EmDRILRPgG~~i-ird~~~~~~~~~~~~~~ 837 (870)
.+|.|.-=+||+||.++ |+|=.+...-+...+.+
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVKELHEWMVKHLEE 198 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHh
Confidence 67889999999999987 45655555555554443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.56 E-value=0.8 Score=48.93 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=78.8
Q ss_pred ccccccccccccccchhHHhhhc----CCC-eEEEEeccCCCCCChhHHHhhCccc---eec--ccccccc-CCCCccch
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALK----DLQ-VWVMNVVNVNSPDTLPIIYERGLFG---IYH--DWCESFS-TYPRSYDL 786 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~----~~~-vwvmNvvp~~~~~tl~~i~eRGlig---~~h--~wce~f~-tyPrtyDl 786 (870)
.-..-++||.+|.+.|=-|..|+ +.+ +.+.=+-|-........+.+-|+-. +++ |+-+-++ ...-+|||
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 33467889999977765444443 233 3332222222224455566666533 444 6777777 46789999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec---------C-----hhhHHHHHHHHHcCCceEEEee--cCCC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD---------E-----PSAVTEVENFLKSLHWEILFAF--SKDQ 850 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird---------~-----~~~~~~~~~~~~~l~W~~~~~~--~~~~ 850 (870)
|-.|+ ..-.....|-+.=++|||||.+|+.+ + ......++....-+.|.-+..- -.-+
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~g 209 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLG 209 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecC
Confidence 74422 22355568888889999999998873 1 1223335555555555432211 1134
Q ss_pred ceEEEEEeC
Q 002884 851 EGVLSAQKG 859 (870)
Q Consensus 851 e~iL~~~K~ 859 (870)
++++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 889999885
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=84.54 E-value=3.7 Score=44.47 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-CCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-QFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-Pfpd~SFDlV~S 537 (870)
..+.+||..||| .|.++..++.. +|++++.++... +.++..|.......... ..+ ......+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-----ELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-----HHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 356788888876 36666666653 688888877633 33444555322211111 000 123467999986
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. .....+.++.+.|+++|.++..+
T Consensus 239 ~~-------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 239 FV-------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 42 12467889999999999999763
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.42 E-value=0.69 Score=51.10 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=72.1
Q ss_pred cccccccccccccccchhHHhhhcCCC-eEEEEeccCCCCCChhHHHhhCccceeccccc-------------cccCCCC
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCE-------------SFSTYPR 782 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce-------------~f~tyPr 782 (870)
+.+...|.||=+|-|-||.++.+.+.+ |==+-+|.+|. .+ +.+.|..++..|.++. -.-.+++
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~V-i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AV-IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HH-HHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 455667899999999999999998875 42222233322 22 5566777777775544 1223667
Q ss_pred ccchhhh---------hcccccccCCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCce
Q 002884 783 SYDLLHA---------DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWE 841 (870)
Q Consensus 783 tyDllHa---------~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~ 841 (870)
+||+|=. .+||| ....-...|+|+|+|.++..-. .+.+..+...++++.+.
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft--------~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFT--------EEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred cCCEEEEcCCCCCCcccccCC--------HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 9999743 33443 2456677899999999999821 12334555555666333
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.01 E-value=9.9 Score=41.72 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=63.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--------CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCcccCC---CCCCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--------DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQ---FPRNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--------~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~LP---fpd~SFDl 534 (870)
.+...+|+|.|+..=++.|.+. +.+.+|++...+.........+. +++ +..++++..++ .+...=-+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-VNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-EeehhhhHHHHHhcccCCCeEE
Confidence 3679999999999766666542 78999999987766554455444 332 33444442222 12222222
Q ss_pred EE-ecccccccccCh-HHHHHHHHhhcCCCcEEEEEE
Q 002884 535 VH-CARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 535 V~-Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ ....+-.+.++. ..+|..+..+|+||-+|++.+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22 221212333443 678899999999999999873
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=83.95 E-value=4.4 Score=45.84 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCccc-----C-CC-CCCce
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKR-----L-QF-PRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~-----L-Pf-pd~SF 532 (870)
.++.+||.+|||. |.++..+++. .|++++.++.++ +.+++. +. ..+...... + .+ ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-----~~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-----EMARSHLGA--ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHcCCc--EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3578999999987 7777666653 488888887643 344444 32 111111110 1 12 23369
Q ss_pred eEEEecccc--------------cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 533 DLVHCARCR--------------VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 533 DlV~Ss~~a--------------lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+|+..... ++-+.+....+.++.++|+|+|.+++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999874210 0111234678999999999999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.88 E-value=3 Score=48.95 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCEEEEECCCCch--hHHHHhc----CCEEEEeCChhhHHHHHHHHHH--HcCCCcEEE-EcCcccCCCCC-CceeEEE
Q 002884 467 YTRVSLDVGCGVAS--FGGYLFE----RDVLTMSFAPKDEHDAQIQFAL--ERGIPAISA-VMGTKRLQFPR-NVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~--~a~~La~----r~VtgVDiSp~ml~~A~vq~A~--ergl~~~~~-v~dae~LPfpd-~SFDlV~ 536 (870)
....++|+|.|.|. .+..+.- +.++.||.+..|+.......-. +.|-+.+.- +.-...+|.+. +.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 45678899888774 3333333 2789999999988766543222 223222222 23346777654 4599999
Q ss_pred ecccccccccCh--HHHHHH-HHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG--GKLLLE-LNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~--~~vL~E-i~RVLKPGG~Lv~S 568 (870)
|++.+.+..... ..+... +.+..++||++++.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 987533322211 334444 45678999999987
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.90 E-value=0.58 Score=51.55 Aligned_cols=58 Identities=19% Similarity=0.423 Sum_probs=33.8
Q ss_pred CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChh
Q 002884 440 GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPK 498 (870)
Q Consensus 440 ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ 498 (870)
||.-...++....+.+...+ .-...-.+.+|||+|||.|.-+...... .+...|++..
T Consensus 90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~ 150 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAE 150 (282)
T ss_pred cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchh
Confidence 33444455555556666443 1111235789999999999766554432 5566666654
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=82.48 E-value=1.1 Score=45.87 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCceeEEEecccccccc--------cCh---HHHHHHHHhhcCCCcEEEEEECCCcCch
Q 002884 529 RNVFDLVHCARCRVPWH--------IDG---GKLLLELNRVLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~--------~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL 576 (870)
.++||.+.|.. ++.+. .|+ ...+.++.++|||||.|+++.|.+.+.+
T Consensus 61 ~~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i 118 (177)
T PF03269_consen 61 AGSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI 118 (177)
T ss_pred hccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce
Confidence 46799998853 34322 122 5789999999999999999976655443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=82.33 E-value=1.3 Score=52.18 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred ccccccccchhHHhhhcC----CCeEEEEeccCCCCCChhHHHhh-Cccc--eeccccccc-cCCCCccchhh----hhc
Q 002884 724 NVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSPDTLPIIYER-GLFG--IYHDWCESF-STYPRSYDLLH----ADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~~tl~~i~eR-Glig--~~h~wce~f-~tyPrtyDllH----a~~ 791 (870)
.||||+|+-||=..+|++ .+..|-|=+....-..|.-..+| |+-- +.+.-...+ ..+|..||.|. |.|
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG 195 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSG 195 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCC
Confidence 499999999997766654 35433322221112444555565 5422 222111122 24577899987 443
Q ss_pred --cccccc-----------CCcCh--hhHHHhhhhcccCCcEEEEe
Q 002884 792 --LFSQLK-----------NRCKL--VPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 --lfS~~~-----------~rc~~--~~vl~EmDRILRPgG~~iir 822 (870)
+|..-. .+|.- ..||...-++|||||.+|.+
T Consensus 196 ~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 196 EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 333210 00111 27888899999999999998
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.32 E-value=0.91 Score=50.15 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=36.1
Q ss_pred CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 782 rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+||..-...+.+++..++....+|-||=|+|||||...|.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 79999888888888888999999999999999999985554
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.97 E-value=2.2 Score=46.61 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=67.2
Q ss_pred ccccccccccccccccchhHHhhhc----CC-CeEEEEeccCCCCCChhHHHhhCccc-ee---ccccccccCCCCccch
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALK----DL-QVWVMNVVNVNSPDTLPIIYERGLFG-IY---HDWCESFSTYPRSYDL 786 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~----~~-~vwvmNvvp~~~~~tl~~i~eRGlig-~~---h~wce~f~tyPrtyDl 786 (870)
++.-+.. ||+.|+|.|.++++|+ .. .||..=+-+-...-.+.-+-+-||.- +- .|.|+.... ..||.
T Consensus 91 gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDa 166 (256)
T COG2519 91 GISPGSR--VLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDA 166 (256)
T ss_pred CCCCCCE--EEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCE
Confidence 4544544 9999999999999998 33 34444332222111111111225544 22 267766443 37776
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCce
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWE 841 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~ 841 (870)
|-. +--..-.+|--++.+|+|||.+++=-+ .+-+.++-..++..+|-
T Consensus 167 v~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 167 VFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred EEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 554 222345799999999999999987654 44455555555555553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=81.52 E-value=1.7 Score=41.76 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSF 495 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDi 495 (870)
.+....+|||||.|.+...|......|..+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCcccc
Confidence 356689999999999988887765544444
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=9.5 Score=41.69 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=28.1
Q ss_pred EEEEECCCCchhHHHHhcC--CEEEEeCChhhHH
Q 002884 470 VSLDVGCGVASFGGYLFER--DVLTMSFAPKDEH 501 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~ 501 (870)
+|||+=+|.|..+..++.+ .|++++-+|....
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaa 124 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAA 124 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHH
Confidence 8999999999999888875 8999999997543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=80.84 E-value=1.8 Score=46.48 Aligned_cols=115 Identities=22% Similarity=0.333 Sum_probs=81.2
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhC-ccceeccccccccCCCCccchh--hhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERG-LFGIYHDWCESFSTYPRSYDLL--HADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRG-lig~~h~wce~f~tyPrtyDll--Ha~~lfS~ 795 (870)
.||-+||..|....++.|- .|+.+-.+|....+-+.++-.|- +|.++.|=. +|..|-++ ..|-+|..
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-----~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-----HPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-----SGGGGTTTS--EEEEEEE
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-----ChHHhhcccccccEEEec
Confidence 4999999999999888753 36888888888778888888876 888888743 55444432 45566776
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe----------cChhhHHHHHHHHHcCCceEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR----------DEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir----------d~~~~~~~~~~~~~~l~W~~~ 843 (870)
..++-....+++-+.+-||+||+++|. ++..+.......++.-..+..
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 666666778889999999999999988 223344444455555555553
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.27 E-value=7.9 Score=43.84 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCCCEEEEECCCC-chhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC---------CCCCC
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL---------QFPRN 530 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L---------Pfpd~ 530 (870)
-+.+.+||-+|+|. |..+...++ .+|+.+|+++.- ++.|++.|............. -+...
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~R-----le~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANR-----LELAKKFGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHH-----HHHHHHhCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 35688999999996 444443343 399999999984 455566665443333221101 12234
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.||+++... -....++.....||+||.+++.+
T Consensus 242 ~~d~~~dCs-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCS-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCCeEEEcc-------CchHHHHHHHHHhccCCEEEEec
Confidence 488888531 23467777889999999988873
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=80.23 E-value=1.1 Score=49.66 Aligned_cols=44 Identities=11% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 781 PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 781 PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
+..||+|-|-+||..... -....|+-.+.+.|+|||++++--..
T Consensus 221 ~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 478999999999876543 34557999999999999999887543
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.09 E-value=2.5 Score=45.69 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=56.4
Q ss_pred CCEEEEECCCCchhHHHHhcC-------------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC--------
Q 002884 468 TRVSLDVGCGVASFGGYLFER-------------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL-------- 525 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r-------------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L-------- 525 (870)
..+|+|+.+..|+++..|.++ .|++||+-+. . .++.+..+.+ ....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C-----------ccCceEEeecccCCHhHHHHHHH
Confidence 578999999999988877642 3999998763 1 1222333332 2111
Q ss_pred CCCCCceeEEEeccc----ccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 526 QFPRNVFDLVHCARC----RVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~----alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-|..+.-|+|+|-.+ .+|-.... ..+|.-..++|||||.|+.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 155668899999421 14422211 34566678999999999964
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 870 | |||
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-10 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 7e-09 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 1e-08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-08 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-08 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 4e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 7e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-07 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 2e-07 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-07 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 4e-07 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 5e-07 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 7e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 8e-07 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 2e-06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 3e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 5e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 7e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 9e-06 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 3e-05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 4e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 5e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 6e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 7e-05 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 1e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-04 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-04 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 2e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 2e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 3e-04 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 6e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 6e-04 |
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPA---ISAVMGTK 523
RV LD+GCG L +R + + + + A G S +
Sbjct: 55 RV-LDLGCGEGWLLRALADRGIEAVGVDGDR-----TLVDAARAAGAGEVHLASYAQLAE 108
Query: 524 RLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV------WSATPVYQKLG 577
+DL+ H D +LL + +L PGG V WS + G
Sbjct: 109 AKVPVGKDYDLICANF--ALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDG 166
Query: 578 EDVEIWNAMSNLTVSMCWELVTIK--MDKLNSAGFAI 612
E + + M W T+ ++ L+ AG +
Sbjct: 167 WREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 33/141 (23%)
Query: 469 RVSLDVGCGVASFGGYLFERDVLTMSFAPK---------DEHDAQIQFALER----GIPA 515
+V L+ GCG+ + T+ A D ++ A E GI
Sbjct: 40 KV-LEAGCGIGA----------QTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN 88
Query: 516 ISAVMGT-KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV-----WS 568
+ + L F + FD + C V H+ + L L +VL+PGG
Sbjct: 89 VKFLQANIFSLPFEDSSFDHIFV--CFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG 146
Query: 569 ATPVYQKLGEDVEIWNAMSNL 589
+ + + + +E WN + +
Sbjct: 147 SCYFHPEGKKAIEAWNCLIRV 167
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 34/159 (21%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEH-------DAQI----QFALERGIPAISAVM 520
LD+G G G+ ++F+P + + FA E+G+ +
Sbjct: 26 LDIGAG----AGHT------ALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ 75
Query: 521 GT-KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGY-----FVWSATPVY 573
GT + L FP + FD++ C H D K + E+ RVL+ G PV
Sbjct: 76 GTAESLPFPDDSFDIITCRY--AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133
Query: 574 QKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAI 612
+ + S++ S E + ++ A
Sbjct: 134 DEFVNHLNRLRDPSHVRESSLSEWQAM----FSANQLAY 168
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 28/150 (18%)
Query: 472 LDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFP 528
LDVG G + G+L + + A ++ A + P+++ GT L
Sbjct: 46 LDVGSGTGRWTGHLASLGHQIEGLEPAT-----RLVELARQTH-PSVTFHHGTITDLSDS 99
Query: 529 RNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNA 585
+ + H+ + L+ L + GG + S G +E
Sbjct: 100 PKRWAGLLA--WYSLIHMGPGELPDALVALRMAVEDGGGLLMSF-----FSGPSLEPMYH 152
Query: 586 MSNLTVSMCW---ELVTIKMDKLNSAGFAI 612
W EL L +AGF +
Sbjct: 153 PVATAYR--WPLPELAQA----LETAGFQV 176
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 472 LDVGCGVASFGGYLFERDV----LTMSFAPKDEHDAQIQFALER----GIPAISAVMGTK 523
LD+ CGV F L + + +S + I+ A E V +
Sbjct: 43 LDLACGVGGFSFLLEDYGFEVVGVDIS-------EDMIRKAREYAKSRESNVEFIVGDAR 95
Query: 524 RLQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDV 580
+L F FD V H + ++ E+ RVL+P G F+ T + + L
Sbjct: 96 KLSFEDKTFDYVIF--IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 153
Query: 581 EIWNA 585
E
Sbjct: 154 ESLVV 158
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 24/127 (18%)
Query: 472 LDVGCGVASFGGYLFER---DV--LTMSFAPKDEHDAQIQFALER----GIPAISAVMGT 522
LD G G +F + +S D Q++ A +
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEIS-------DLQLKKAENFSRENNFKLNISKGDI 80
Query: 523 KRLQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFV---WSATPVYQKL 576
++L F V+ +H+ D + + E+ RVL+PGG +
Sbjct: 81 RKLPFKDESMSFVYS--YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
Query: 577 GEDVEIW 583
GE +
Sbjct: 139 GEKIGEG 145
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 30/154 (19%)
Query: 472 LDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG-IPAISAVMG-TKRLQF 527
LDVGCG L + + + IQ ERG P +S + G L F
Sbjct: 58 LDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 528 PRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV---WSATP-----VYQKLGE 578
F+ + + + L E+ RVL+ GY T Y +L
Sbjct: 113 ENEQFEAIMA--INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170
Query: 579 DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAI 612
+ N M WE + + GF +
Sbjct: 171 KDVVCNTMMP------WEFEQL----VKEQGFKV 194
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 26/109 (23%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPK--------DEHDAQIQFALERGIPA-----ISA 518
D+GCG GG T+ A D I+ E + A +
Sbjct: 51 ADIGCGT---GG-------QTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKG 100
Query: 519 VMGT-KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
+ G+ L F DL+ ++I + + E ++ L+ GG+
Sbjct: 101 ITGSMDNLPFQNEELDLIWSEG--AIYNIGFERGMNEWSKYLKKGGFIA 147
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 469 RVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER----GIPAISAVMG 521
R+ +D+GCG F + E VL + + K + A GI A +
Sbjct: 46 RI-VDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 522 TKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT-PVYQKLGEDV 580
+L P++ FDL + + + + D +L +++ L PGG+FV+S P+Y +
Sbjct: 100 --KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIY--MAPAR 154
Query: 581 EIW 583
W
Sbjct: 155 PGW 157
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 469 RVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQF 527
+ L+VG G + L + + + A + R P + V + L F
Sbjct: 39 SL-LEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPF 91
Query: 528 PRNVFDLVHCAR--CRVPWHIDGGKLLLELNRVLRPGGYFV 566
P FD+V V D ++LLE RVLRPGG V
Sbjct: 92 PGESFDVVLLFTTLEFVE---DVERVLLEARRVLRPGGALV 129
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 26/109 (23%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPK--------DEHDAQIQFALERGIPA-----ISA 518
D+GCG GG TM A D I + ++
Sbjct: 51 ADIGCGT---GG-------QTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTG 100
Query: 519 VMGT-KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
++G+ L F DL+ ++I + L E + L+ GGY
Sbjct: 101 IVGSMDDLPFRNEELDLIWSEG--AIYNIGFERGLNEWRKYLKKGGYLA 147
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR-L 525
++ LD GCG GGYL ++ DVL P I +A + P V+G
Sbjct: 49 KI-LDAGCGQGRIGGYLSKQGHDVLGTDLDP-----ILIDYAKQDF-PEARWVVGDLSVD 101
Query: 526 QFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFV 566
Q FDL+ + V + L ++R L G V
Sbjct: 102 QISETDFDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 27/109 (24%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEH----D--------AQIQFALERGIPAISAV 519
LDV G GG++ +FAP + D A+ F G + V
Sbjct: 42 LDVATG----GGHV------ANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYV 90
Query: 520 MGT-KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
G +++ F F +V C H + + E RVL+ GG +
Sbjct: 91 QGDAEQMPFTDERFHIVTCRI--AAHHFPNPASFVSEAYRVLKKGGQLL 137
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNV 531
+++G G F L + + S + + A +RG+ + + L
Sbjct: 52 VEIGVGTGRFAVPLKIKIGVEPS-------ERMAEIARKRGVFVLKGTA--ENLPLKDES 102
Query: 532 FDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
FD + D + L E R+L+ GGY +
Sbjct: 103 FDFALMVT--TICFVDDPERALKEAYRILKKGGYLI 136
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 31/132 (23%)
Query: 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQI---- 505
Y+ F+ V KI + +D GCG GYL + P ++
Sbjct: 8 DYVSFLVNTVWKITKPV--HI-VDYGCGY----GYL------GLVLMPLLPEGSKYTGID 54
Query: 506 ----------QFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLE 554
+ + ++ +D+ C H+ +L +
Sbjct: 55 SGETLLAEARELFRLLPYDSEFLEGDATEIELNDK-YDIAIC--HAFLLHMTTPETMLQK 111
Query: 555 LNRVLRPGGYFV 566
+ ++ GG +
Sbjct: 112 MIHSVKKGGKII 123
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRN 530
D+G G + L + + + + Q A P + G + L P
Sbjct: 39 ADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQA--VVHPQVEWFTGYAENLALPDK 93
Query: 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
D V + K E+ R++R G +
Sbjct: 94 SVDGVISILA-IHHFSHLEKSFQEMQRIIRDGTIVL 128
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 26/133 (19%)
Query: 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKD----EHDAQ 504
HY + + + K ++ V LD+GC G L + E +
Sbjct: 15 GHYYNAVNPNLLKHIKKEWKEV-LDIGCS----SGALGA----AIKENGTRVSGIEAFPE 65
Query: 505 -IQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI-----DGGKLLLELNRV 558
+ A E+ + + T + + FD V + D ++ ++
Sbjct: 66 AAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVKPY 119
Query: 559 LRPGGYFVWSATP 571
++ G + S P
Sbjct: 120 IKQNGVILAS-IP 131
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 19/135 (14%)
Query: 441 GTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DV--LTMSF 495
G +I ++ ++ + I + ++V LD+G G+ Y+ E+ + +
Sbjct: 32 GENYISSG--GLEATKKILSDIELNENSKV-LDIGSGLGGGCMYINEKYGAHTHGIDIC- 87
Query: 496 APKDEHDAQIQFALER--GIPAISAVMGTKR-LQFPRNVFDLVHCARCRVPWHI-DGGKL 551
+ A ER G I +FP N FDL++ + + + KL
Sbjct: 88 ------SNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKL 141
Query: 552 LLELNRVLRPGGYFV 566
+ + L+P G +
Sbjct: 142 FQKCYKWLKPTGTLL 156
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 41/273 (15%), Positives = 86/273 (31%), Gaps = 77/273 (28%)
Query: 623 EKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNS 682
K+ +M + N + L + + + + E QR + N
Sbjct: 73 SKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIE------QRDRLY-ND 122
Query: 683 SQMGIYGRPAPQDFTRDYKHWRYVVSTSYMSGLGINWSNVRN-VMDMR-----AVYG--G 734
+Q A + +R + + +R ++++R + G G
Sbjct: 123 NQ-----VFAKYNVSRLQPYLK-----------------LRQALLELRPAKNVLIDGVLG 160
Query: 735 F------AAALKDLQV---------WVMNVVNVNSPDTLPIIYERGLFGIYHDWC---ES 776
+V W +N+ N NSP+T+ + ++ L+ I +W +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 777 FSTYPRSYDLLHA---DHLFSQLKNRCKLVPVMAEV--DRIVRP---GGKLIV--RDEPS 826
S + A L S+ C L V+ V + K+++ R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRF--K 275
Query: 827 AVTEVENFLKSLHW---EILFAFSKDQ-EGVLS 855
VT+ + + H + D+ + +L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 4e-06
Identities = 77/616 (12%), Positives = 157/616 (25%), Gaps = 223/616 (36%)
Query: 214 HQEQHVQQKEETPFHSFSDQIVPYLQPPPQQEVQVSDSPKSENVTQETEQE--NTEETDG 271
H H+ + + + D I+ + D Q+ + + EE D
Sbjct: 2 HHHHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKD-------VQDMPKSILSKEEID- 52
Query: 272 KRAKEHKLTNSNSGVSETWNPDGRNTGSSPKESLESRKSWSTQASQSQNEKERRKDESEG 331
+ S VS T R W+ + Q + ++ ++
Sbjct: 53 ------HIIMSKDAVSGTL-----------------RLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 332 DEGNGNIDGYTW---RLCNETTGPDFIPCLDNTKAIQQLRTTAHYEHRERHCPEEGPVCL 388
+ Y + + E P + T + E R+R
Sbjct: 90 N--------YKFLMSPIKTEQRQP-------------SMMTRMYIEQRDRLY--NDNQVF 126
Query: 389 VPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRVTGEIITFPGGG-TQFIHG 447
Y V P + + L E++ + V + G G G T
Sbjct: 127 AK----YNVSRLQPYLKLRQA--------LLELRPAK-NVLIDG----VLGSGKTWVALD 169
Query: 448 ALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTM----------SFAP 497
+ KI W + VL M ++
Sbjct: 170 VCLSYKVQCKMDFKIFW--------------LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 498 KDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNR 557
+ +H + I+ + + ++ +K + C LL
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYE------------NC----------LL----- 248
Query: 558 VLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDK--LNSAGFAIYRK 615
VL V + + WNA NL+ C L+T + K + A
Sbjct: 249 VLLN----VQ-----------NAKAWNAF-NLS---CKILLTTR-FKQVTDFLSAATTTH 288
Query: 616 PTTNECYEKRNQMTPPMCQNEEDPNAAWY------VPLQAC-VHRVPVDK-AERGSQWPE 667
+ + +TP + + +P + + + AE
Sbjct: 289 ISLD---HHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 668 AWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRY--VVSTSYMSGLGINWSNVRNV 725
W D + + ++ +S NV
Sbjct: 343 TW-------------------------DNWKHVNCDKLTTIIESSL---------NVLEP 368
Query: 726 MDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYD 785
+ R ++ L V+ + ++ L +I W + +
Sbjct: 369 AEYRKMF-------DRLSVFPPS-AHI-PTILLSLI-----------WFDVIKSDVM--V 406
Query: 786 LLHADHLFSQLKNRCK 801
+++ H +S ++ + K
Sbjct: 407 VVNKLHKYSLVEKQPK 422
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 472 LDVGCGVASFGGYLFERDVLT-----MSFAPKDEHDAQIQFALER-GIPAISAVMG-TKR 524
LD+GCG Y E +S + + A + P + +
Sbjct: 49 LDLGCGFGWHCIYAAEHGAKKVLGIDLS-------ERMLTEAKRKTTSPVVCYEQKAIED 101
Query: 525 LQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT-PVYQKLGED 579
+ + +++V + + + + ++ L+ G F++S PV+ G
Sbjct: 102 IAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFA---LERGIPAISAVMGT- 522
L++G G L R + + A ++ + + V
Sbjct: 42 VF-LELGVGTGRIALPLIARGYRYIALDADA-----AMLEVFRQKIAGVDRKVQVVQADA 95
Query: 523 KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
+ + P V + + D K+L E RVL+PGG +
Sbjct: 96 RAIPLPDESVHGVIVVH--LWHLVPDWPKVLAEAIRVLKPGGALL 138
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 24/111 (21%)
Query: 469 RVSLDVGCGVASFGGYLFER---DV--LTMSFAPKDEHDAQIQFALERGIPA-----ISA 518
RV LDVGCG+ L V +++S Q+ A R A ++
Sbjct: 64 RV-LDVGCGIGKPAVRLATARDVRVTGISIS-------RPQVNQANARATAAGLANRVTF 115
Query: 519 VMGTKR-LQFPRNVFDLVHC--ARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
L F FD V + +P D G+ L E+ RVLRPGG
Sbjct: 116 SYADAMDLPFEDASFDAVWALESLHHMP---DRGRALREMARVLRPGGTVA 163
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 24/119 (20%)
Query: 456 QQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPK-------DEHDAQIQFA 508
++ +P I GK + +D GCG G+ D + ++
Sbjct: 7 EEYLPNIFEGKKGVI-VDYGCG----NGFY------CKYLLEFATKLYCIDINVIALKEV 55
Query: 509 LERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV 566
E+ ++ + + P N D + A + D ++ E+ R+L+ G +
Sbjct: 56 KEK-FDSVITLSD--PKEIPDNSVDFILFAN--SFHDMDDKQHVISEVKRILKDDGRVI 109
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 472 LDVGCGVASFGGYLFERD---VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528
LD+G G + +L ER VL D ++ A E+G+ + + L FP
Sbjct: 59 LDLGGGTGKWSLFLQERGFEVVLV------DPSKEMLEVAREKGVKNV-VEAKAEDLPFP 111
Query: 529 RNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLGE--DVEIWNA 585
F+ V A V ++ + K E+ RVL P G + + Y L + + + W+
Sbjct: 112 SGAFEAV-LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQ 170
Query: 586 MSNL 589
++
Sbjct: 171 ITRF 174
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 9e-06
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALE 510
DF+ +I GK L + G +L +V + + A+ Q A E
Sbjct: 19 DFLVSVANQIPQGK----ILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQE 73
Query: 511 RGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
+G+ + + ++ + C +P + +L ++ + L+PGG F+
Sbjct: 74 KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQ-QLYPKVYQGLKPGGVFI 128
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 17/108 (15%), Positives = 26/108 (24%), Gaps = 23/108 (21%)
Query: 469 RVSLDVGCGVASFGGYLFERDVLTMSFAPK-------DEHDAQIQFALERGIPAISAVMG 521
V L++ G GY T + D I A G+ +
Sbjct: 49 DV-LELASG----TGYW------TRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQ 97
Query: 522 TKRLQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFV 566
P +D V H+ + + PGG
Sbjct: 98 DLFDWTPDRQWDAVFF--AHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 18/97 (18%)
Query: 470 VSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529
V D GCG + V A D A ++
Sbjct: 70 VVADFGCGDCRLASSIRNP-VHCFDLASLDPRVTVCDMA---------------QVPLED 113
Query: 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
D+ C + L E NRVL+PGG
Sbjct: 114 ESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLK 148
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 29/109 (26%)
Query: 469 RVSLDVGCGVASFGGYLFERDVLTMSFAPK-------DEHDAQIQFALERGIPAISAVMG 521
RV L+ GCG G F P+ D ++ A P
Sbjct: 51 RV-LEAGCG----HGPD------AARFGPQAARWAAYDFSPELLKLARANA-PHADVYEW 98
Query: 522 TKRLQFP---RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567
+ + P F L+ R ++L L + P +F++
Sbjct: 99 NGKGELPAGLGAPFGLIVSRR-------GPTSVILRLPELAAPDAHFLY 140
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 11/129 (8%)
Query: 446 HGALHYIDFIQQAVPKIAW-GKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQ 504
+H +D + G T +LD G G+ L + T +
Sbjct: 71 MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL--EPVKHM 128
Query: 505 IQFALER--GIPAIS-AVMGTKRLQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRV 558
++ A G+P + + P N +DL+ ++ D K +
Sbjct: 129 LEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT--AIYLTDADFVKFFKHCQQA 186
Query: 559 LRPGGYFVW 567
L P GY +
Sbjct: 187 LTPNGYIFF 195
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 472 LDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQFP 528
L++GCG + DV +P A R G P + + +L
Sbjct: 48 LELGCGAGYQAEAMLAAGFDVDATDGSP-----ELAAEASRRLGRPVRTMLFH--QLDAI 100
Query: 529 RNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFVWS 568
+ +D V H+ + +L + R L+PGG F S
Sbjct: 101 -DAYDAVWA--HACLLHVPRDELADVLKLIWRALKPGGLFYAS 140
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 38/150 (25%)
Query: 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DV--LTMSFAPKDEHDAQIQ 506
+F+ + + + +D GCG R V +T+S AQ
Sbjct: 105 AEFLMDHLGQAGPDD--TL-VDAGCGRGGSMVMAHRRFGSRVEGVTLS-------AAQAD 154
Query: 507 FALER----GIPA-ISAVMGTKR-LQFPRNVFDLVHCARCRVPW------HIDGGKLLLE 554
F R I + + + F + W ++D L E
Sbjct: 155 FGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS--------WNNESTMYVDLHDLFSE 206
Query: 555 LNRVLRPGGYFV---WSATPVYQKLGEDVE 581
+R L+ GG +V P Y + + V
Sbjct: 207 HSRFLKVGGRYVTITGCWNPRYGQPSKWVS 236
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 30/116 (25%)
Query: 469 RVSLDVGCGVASFGGYLFER---DV--LTMSFAPKDEHDAQIQFALERGIPAISAVMGTK 523
+ LD+G G +L + + L ++ Q + E A +
Sbjct: 85 KG-LDLGAGYGGAARFLVRKFGVSIDCLNIA-------PVQNKRNEEY---NNQAGLADN 133
Query: 524 ---------RLQFPRNVFDLV--HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568
+ N +D + A P D K+ E RVL+P G +
Sbjct: 134 ITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP---DKLKVFQECARVLKPRGVMAIT 186
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 36/181 (19%)
Query: 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPK-------DEHD 502
HY D ++ V K + V L+ G G G L T +
Sbjct: 33 HYEDILEDVVNK----SFGNV-LEFGVGT----GNL------TNKLLLAGRTVYGIEPSR 77
Query: 503 AQIQFALERGIPAISAVMGTKR-LQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRV 558
A E+ S G + P D + H+ + + + +++
Sbjct: 78 EMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTY--AFHHLTDDEKNVAIAKYSQL 134
Query: 559 LRPGGYFV-----WSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKM--DKLNSAGFA 611
L GG V ++ Y K E + I + + GF
Sbjct: 135 LNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
Query: 612 I 612
+
Sbjct: 195 V 195
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 33/120 (27%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPK----------DEHDAQIQFALER----GIPAIS 517
LDVG G G+ + D + + +A E+ G+ +
Sbjct: 42 LDVGTG----AGFY------LPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 518 AVMGT-KRLQFPRNVFDLVHCARC--RVPWHIDGGKLLLELNRVLRPGGYFV---WSATP 571
+ ++ P N D + A + + K L EL RV +P Y W
Sbjct: 92 VLKSEENKIPLPDNTVDFIFMAFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEE 148
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 41/164 (25%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPK--------DEHDAQIQFALER----GI-PAISA 518
+D+G G G L +++ A + D + AL+ + I
Sbjct: 48 IDIGSG----PGAL------SIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQI 97
Query: 519 VMGT-KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFV--------WS 568
V G + N DL+ R + D E+ R+L+ GG
Sbjct: 98 VQGDVHNIPIEDNYADLIVS-RG-SVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKEL 155
Query: 569 ATPVYQKLGEDVEIWNAMSNLTVSMCW--ELVTIKMDKLNSAGF 610
+ ++ W + +S + L+ G
Sbjct: 156 RDSISAEMIRKNPDWKEFNRKNISQENVERFQNV----LDEIGI 195
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 23/132 (17%)
Query: 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALER 511
I + G+ + +DVGCG + + + D I+ A
Sbjct: 26 YKMIDEYHD----GERKLL-VDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80
Query: 512 ------GIPAISAVMGT-------KRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNR 557
+S + + + D++ C H D K
Sbjct: 81 KEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVEC---AHWFDFEKFQRSAYA 137
Query: 558 VLRPGGYF-VWS 568
LR G +W
Sbjct: 138 NLRKDGTIAIWG 149
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 472 LDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFP 528
LD+GCG YL DV + + + + + + L F
Sbjct: 37 LDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVE-RIKSIENLDNLHTRVVDLNNLTFD 95
Query: 529 RNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSA 569
R +D + + L+ + R +PGGY + A
Sbjct: 96 RQ-YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 8/120 (6%)
Query: 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFAL 509
F+Q+ + + T +LD G G+ L +V + A+
Sbjct: 65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE 124
Query: 510 ERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFV 566
E G + + +D++ H+ + L LRP G V
Sbjct: 125 EGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV--IGHLTDQHLAEFLRRCKGSLRPNGIIV 182
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 870 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.6 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.57 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.53 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.53 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.53 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.53 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.52 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.52 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.51 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.51 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.51 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.51 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.5 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.5 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.5 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.5 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.48 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.47 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.47 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.46 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.45 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.45 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.44 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.43 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.43 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.42 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.41 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.41 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.41 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.41 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.41 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.4 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.4 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.39 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.38 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.37 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.37 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.37 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.37 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.36 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.36 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.35 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.35 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.35 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.35 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.34 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.34 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.34 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.33 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.33 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.33 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.32 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.32 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.31 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.31 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.31 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.3 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.3 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.3 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.29 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.29 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.28 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.28 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.28 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.28 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.28 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.27 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.27 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.27 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.26 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.25 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.24 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.24 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.22 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.21 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.2 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.2 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.19 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.19 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.19 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.18 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.17 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.17 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.16 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.16 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.15 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.15 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.13 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.13 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.13 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.13 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.12 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.12 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.12 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.12 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.11 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.11 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.1 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.1 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.1 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.09 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.09 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.09 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.09 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.09 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.08 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.08 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.08 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.08 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.08 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.06 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.06 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.06 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.06 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.06 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.06 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.05 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.05 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.04 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.04 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.04 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.04 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.04 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.03 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.03 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.02 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.02 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.02 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.02 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.01 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.01 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.01 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.0 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.0 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.99 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.99 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.98 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.98 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.98 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.97 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.97 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.96 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.96 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.95 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.95 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.94 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.93 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.92 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.92 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.91 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.91 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.9 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.89 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.89 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.89 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.89 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.89 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.89 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.89 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.89 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.88 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.88 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.88 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.88 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.88 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.87 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.87 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.87 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.86 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.85 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.85 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.85 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.85 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.84 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.83 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.82 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.82 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.82 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.79 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.79 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.79 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.79 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.79 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.78 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.77 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.77 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.76 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.76 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.76 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.74 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.74 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.73 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.73 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.73 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.72 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.72 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.71 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.71 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.68 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.67 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.66 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.64 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.62 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.62 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.61 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.6 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.6 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.6 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.59 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.58 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.58 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.57 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.57 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.56 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.53 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.53 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.52 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.5 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.5 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.49 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.49 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.48 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.48 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.48 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.47 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.46 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.46 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.45 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.44 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.43 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.43 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.42 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.42 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.41 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.4 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.4 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.39 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.37 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.37 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.37 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.37 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.36 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.36 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.36 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.36 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.36 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.36 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.35 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.35 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.35 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.35 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.34 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.34 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.34 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.34 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.33 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.32 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.32 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.32 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.32 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.31 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.3 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.3 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.3 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.29 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.29 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.28 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.28 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.28 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.27 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.26 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.26 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.25 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.25 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.25 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.25 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.25 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.24 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.24 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.23 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.22 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.22 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.21 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.2 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.2 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.2 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.2 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.2 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.19 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.19 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.18 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.17 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.17 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.16 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.16 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.16 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.16 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.16 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.16 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.16 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.14 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.12 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.12 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.12 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.11 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.11 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.1 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.1 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.1 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.1 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.09 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.09 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.09 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.09 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.09 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.08 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.08 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.07 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.07 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.07 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.07 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.06 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.06 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.05 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.05 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.04 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.04 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.04 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.03 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.03 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.01 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.0 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.0 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.99 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.98 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.97 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.97 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.97 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.96 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.96 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.96 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.95 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.95 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.94 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.94 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.93 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.92 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.91 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.91 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.91 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.9 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.88 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 97.88 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.88 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.87 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.85 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.81 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 97.81 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.8 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.79 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.79 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.77 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 97.76 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.74 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.74 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.73 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.73 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 97.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.72 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.72 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.7 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.7 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.7 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.7 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.7 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.7 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.69 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.69 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.68 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.68 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.68 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.68 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.68 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.67 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.66 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.66 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.66 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.66 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.65 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.64 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.64 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.64 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.63 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.62 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.62 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.6 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.6 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.59 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 97.58 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.58 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.58 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.55 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.55 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.53 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.52 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.52 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 97.5 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.48 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.47 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.46 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.46 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.45 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.44 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.44 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.44 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.43 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.43 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.42 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.42 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.41 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.4 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.38 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.38 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.37 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.37 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.36 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.34 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.34 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.34 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.28 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.28 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.26 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.23 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.22 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.22 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.22 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.19 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.18 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 97.18 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.18 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.16 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.16 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.14 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.14 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.12 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 97.09 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.09 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.08 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.08 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.06 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.05 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=150.13 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=102.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..++. .+...+++.+.+ ..+...+|+++++||+|+|+.+ +
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~-l 113 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA-A 113 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC-G
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh-h
Confidence 36789999999999999999875 89999999999988874 445556554444 4456889999999999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhc---ccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMS---NLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~---~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..++..+|.++.|+|||||+|++....... .+.....+..+. ...+...+. .......+.++||.+..
T Consensus 114 ~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aGf~~~~ 186 (260)
T 1vl5_A 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE-NDAFDVFYNYVEKERDYSHHRAWK-KSDWLKMLEEAGFELEE 186 (260)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS-SHHHHHHHHHHHHHHCTTCCCCCB-HHHHHHHHHHHTCEEEE
T ss_pred HhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCC-CHHHHHHHHHHHHhcCccccCCCC-HHHHHHHHHHCCCeEEE
Confidence 77789999999999999999999997433222 122222222111 111112222 22456677888998765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=157.11 Aligned_cols=94 Identities=26% Similarity=0.316 Sum_probs=78.3
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
..+|||||||+|.++..|+.+ +|+|+|+|+.|+..|. + .....+.+.+.+.+|+++++||+|+|+.+ +||.
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~-----~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~~-~h~~ 112 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL-----R-HPRVTYAVAPAEDTGLPPASVDVAIAAQA-MHWF 112 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC-----C-CTTEEEEECCTTCCCCCSSCEEEEEECSC-CTTC
T ss_pred CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh-----h-cCCceeehhhhhhhcccCCcccEEEEeee-hhHh
Confidence 579999999999999999886 8999999999876543 1 22234455567899999999999999864 7886
Q ss_pred cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+...++.++.|+|||||+|++..
T Consensus 113 -~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 113 -DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -hHHHHHHHHHHHcCCCCEEEEEE
Confidence 58899999999999999999874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=148.02 Aligned_cols=146 Identities=22% Similarity=0.244 Sum_probs=102.1
Q ss_pred CCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+. ..|+|+|+++.++..++. .+...++. ..+...+...+|+++++||+|++..+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA-RATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 4678999999999999988875 389999999999988774 34444543 34445556788999999999999864
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHH-HHHHhhc-ccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDV-EIWNAMS-NLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~-~~w~~~~-~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..+...+|.++.|+|||||+|++............. ..+..+. .......+. .......+.++||.+..
T Consensus 139 -l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aGf~~~~ 212 (273)
T 3bus_A 139 -LHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGG-IDEYESDVRQAELVVTS 212 (273)
T ss_dssp -TTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCC-HHHHHHHHHHTTCEEEE
T ss_pred -hhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCC-HHHHHHHHHHcCCeEEE
Confidence 777788899999999999999999998543222222211 1111111 111111222 23456678889998876
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-14 Score=142.59 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=103.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.|+..++. .+...+++.+. ...+...+|+++++||+|+|..+ +
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-l 97 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA-A 97 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC-G
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc-h
Confidence 46789999999999999999875 89999999999988874 34445555444 44456789999999999999865 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhc---ccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMS---NLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~---~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
++..++..+|.++.|+|||||+|++........ ......+..+. ...+...+. .......+..+||.+..
T Consensus 98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESS-LSEWQAMFSANQLAYQD 170 (239)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCB-HHHHHHHHHHTTEEEEE
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCC-HHHHHHHHHHCCCcEEE
Confidence 666788999999999999999999985433222 22222222211 111112222 33556778889998766
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=149.91 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCC-cEEE-EcCcccCCCCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIP-AISA-VMGTKRLQFPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~-v~dae~LPfpd~SFDlV~ 536 (870)
.+++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+.+.. ..+.. .+.+ ..+...+|++ .||+|+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~-~~~~~~~v~~~~~D~~~~~~~--~~d~v~ 144 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAIE--NASMVV 144 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHH-TSCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHH-hhccCceEEEeeccccccccc--ccccce
Confidence 356889999999999999888753 69999999999999885443 33332 3434 4456777774 599999
Q ss_pred ecccccccccCh--HHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+. ++||..+. ..+|++++|+|||||+|+++...
T Consensus 145 ~~~-~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 145 LNF-TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp EES-CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eee-eeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 986 47776543 57899999999999999998543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=142.74 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=104.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++. .+...+++ ..+...+...+|+++++||+|+|+.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 46789999999999999999875 89999999999988874 44455554 34445566888999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECC--CcCchhHHHHHHHh-hcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATP--VYQKLGEDVEIWNA-MSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p--~~~tL~El~~~w~~-~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++. ++..+|.++.|+|||||+|++.... ...........|.. ...+.. .......+.++||.+..
T Consensus 124 -~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 124 -IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDT------IPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp -GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEE------HHHHHHHHHHTTEEEEE
T ss_pred -ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCC------HHHHHHHHHHCCCEEEE
Confidence 5555 7899999999999999999998532 12233445555632 211111 33456678899999876
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=141.85 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=103.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++. .+...++. ..+...+...+|+++++||+|+|+.+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 45779999999999999988764 89999999999988874 44555655 34445556888999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECC--CcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATP--VYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p--~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++. +...+|.++.|+|||||+|+++.+. ...........|...- .. + + ........+.++||.+..
T Consensus 124 -l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~-~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 124 -IYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAY--PE-I-S-VIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp -SCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHC--TT-C-C-BHHHHHHHHHHTTEEEEE
T ss_pred -Hhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhC--CC-C-C-CHHHHHHHHHHCCCeEEE
Confidence 5555 7899999999999999999998532 2223444555565321 11 1 1 133456678899998877
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-14 Score=137.97 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=101.1
Q ss_pred CEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 469 RVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.+|||||||+|.++..|+.. .|+++|+++.++..++.. +...++. ..+...+...+|+++++||+|+|+.+ ++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-l~ 122 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN-IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS-VF 122 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC-GG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHhccccCceEEEEcCHHHCCCCcccccEEEECch-Hh
Confidence 39999999999999888764 899999999999888754 3444443 34445566888999999999999864 67
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHH-HHHhhc-----ccccccchhHHHHHHHHHhhccceEEE
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVE-IWNAMS-----NLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~-~w~~~~-----~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+..+...+|.++.|+|||||+|+++.......+.+... .+.... .....+.+.........+.++||.+..
T Consensus 123 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 123 FWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred hccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 67888999999999999999999986554443332211 111110 000112232334566778888987655
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-16 Score=164.34 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc------CCCc-EEEEcCcccCC----CC--CC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER------GIPA-ISAVMGTKRLQ----FP--RN 530 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er------gl~~-~~~v~dae~LP----fp--d~ 530 (870)
++.+|||||||+|.++..|+.. .|+++|+++.|+..++....... +... .+...+...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999999888753 89999999999988876554331 2223 34444556655 54 45
Q ss_pred ceeEEEecccccccc-cC---hHHHHHHHHhhcCCCcEEEEEE
Q 002884 531 VFDLVHCARCRVPWH-ID---GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 531 SFDlV~Ss~~alhw~-~D---~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+||+|+|+. ++||. .+ ...+|.++.|+|||||+|+++.
T Consensus 114 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 114 CFDICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp CEEEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999986 58887 44 3699999999999999999984
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=143.84 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=98.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cE-EEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AI-SAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~-~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..++. .+...++. .+ +...+...+|+ +++||+|+|..+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 46789999999999999888753 89999999999998874 44455653 34 44455677887 889999999754
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..+...+|.++.|+|||||+|++..+.... ...+....|.. ... ..+.........+.++||.+..
T Consensus 113 -~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 113 -TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGV---SST-SDFLTLPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp -GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTC---SCG-GGSCCHHHHHHHHHTTTBCCCE
T ss_pred -hHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhc---ccc-cccCCHHHHHHHHHHCCCeeEE
Confidence 666678899999999999999999998532211 11222222221 111 0111233456677888887655
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-14 Score=146.36 Aligned_cols=143 Identities=15% Similarity=0.205 Sum_probs=100.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++.. +...++. ..+...+...+|+++++||+|++..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 46789999999999999888764 899999999999888744 3444542 34445556889999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..++..+|.++.|+|||||+|++..+..... .......+.... ... +.........+..+||.+..
T Consensus 160 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 160 -FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIK-LHD---MGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHT-CSS---CCCHHHHHHHHHHTTEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhc-CCC---CCCHHHHHHHHHHCCCeEEE
Confidence 6666788999999999999999999985432221 111222222211 111 11122445678889998876
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=149.44 Aligned_cols=147 Identities=8% Similarity=-0.020 Sum_probs=93.2
Q ss_pred CCCCEEEEECCCCchhHHH----Hhc----CC--EEEEeCChhhHHHHHHHHHHHcCCCcEEEE--c-CcccC------C
Q 002884 466 KYTRVSLDVGCGVASFGGY----LFE----RD--VLTMSFAPKDEHDAQIQFALERGIPAISAV--M-GTKRL------Q 526 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~----La~----r~--VtgVDiSp~ml~~A~vq~A~ergl~~~~~v--~-dae~L------P 526 (870)
.++.+|||||||+|.++.. ++. .. ++++|+|+.|+..|+.+.+...+++++.+. . +...+ |
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3567999999999976543 322 22 399999999999887554433355544332 2 22333 3
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHH-HHhhcccccccchhHHHHHHHHH
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI-WNAMSNLTVSMCWELVTIKMDKL 605 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~-w~~~~~la~~mcW~~va~~~~~L 605 (870)
|++++||+|+|+.+ +||..|+..+|.+++|+|||||+|++........+..+... |..+..... ............+
T Consensus 131 ~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 208 (292)
T 2aot_A 131 KELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDL-CQYITSDDLTQML 208 (292)
T ss_dssp TCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTT-CCCCCHHHHHHHH
T ss_pred cCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCc-ccCCCHHHHHHHH
Confidence 67899999999864 88889999999999999999999999743221122221111 121111001 1111123456678
Q ss_pred hhccceEEE
Q 002884 606 NSAGFAIYR 614 (870)
Q Consensus 606 ~daGfaI~r 614 (870)
.++||.+..
T Consensus 209 ~~aGf~~~~ 217 (292)
T 2aot_A 209 DNLGLKYEC 217 (292)
T ss_dssp HHHTCCEEE
T ss_pred HHCCCceEE
Confidence 889997765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=140.49 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|++. .|+|+|+++.++..|+..... ...+...+...+ +++++||+|+|..+ +++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~-~~~~~fD~v~~~~~-l~~ 115 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA-QLPRRYDNIVLTHV-LEH 115 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC-CCSSCEEEEEEESC-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc-CcCCcccEEEEhhH-HHh
Confidence 4678999999999999999876 899999999988776532211 233344445555 57889999999864 777
Q ss_pred ccChHHHHHHHH-hhcCCCcEEEEEEC
Q 002884 545 HIDGGKLLLELN-RVLRPGGYFVWSAT 570 (870)
Q Consensus 545 ~~D~~~vL~Ei~-RVLKPGG~Lv~S~~ 570 (870)
..++..+|.++. |+|||||+|+++.+
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 788999999999 99999999999853
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=144.43 Aligned_cols=135 Identities=17% Similarity=0.102 Sum_probs=95.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC--CCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL--QFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L--Pfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. +|+|+|+++.++..+. ++ ..+...+...+ |+++++||+|+|+.+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~- 110 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCE-----GK---FNVVKSDAIEYLKSLPDKYLDGVMISHF- 110 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHH-----TT---SEEECSCHHHHHHTSCTTCBSEEEEESC-
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHH-----hh---cceeeccHHHHhhhcCCCCeeEEEECCc-
Confidence 45689999999999999888764 8999999999776554 22 23344444443 888999999999864
Q ss_pred cccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..+. ..+|.++.|+|||||+|++.. +....+......|.. ..+...+.. ......+..+||.+..
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~-~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIES-PNPTSLYSLINFYID---PTHKKPVHP-ETLKFILEYLGFRDVK 180 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEE-ECTTSHHHHHHHTTS---TTCCSCCCH-HHHHHHHHHHTCEEEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEe-CCcchhHHHHHHhcC---ccccccCCH-HHHHHHHHHCCCeEEE
Confidence 6666644 899999999999999999984 444455444443321 112122222 3456678889998776
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=140.91 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..+.... ..+.+.+ +...+...+|+++++||+|+++. ++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPLPDESVHGVIVVH-LW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCSCTTCEEEEEEES-CG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCCCCCCeeEEEECC-ch
Confidence 45789999999999999999875 8999999999988776433 2233334 44555678899999999999985 48
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
||..+...+|.++.|+|||||+|++.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 88888999999999999999999987
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=142.95 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=102.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~SFDlV~Ss~ 539 (870)
..++.+|||||||+|.++..|+.. .|+++|+++.++..++. .+...+++.+.+ ..+...+|+++++||+|+++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 346789999999999999888753 89999999999988874 444556554444 445678899999999999986
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCc-----CchhHHHHHHHhhcc---cccccchhHHHHHHHHHhhccce
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVY-----QKLGEDVEIWNAMSN---LTVSMCWELVTIKMDKLNSAGFA 611 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~-----~tL~El~~~w~~~~~---la~~mcW~~va~~~~~L~daGfa 611 (870)
+ +++..++..+|.++.|+|||||+|++..+... .........|..+.. ......+. .......+.++||.
T Consensus 114 ~-l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 114 V-LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLV-GRQIYPLLQESGFE 191 (276)
T ss_dssp C-GGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTG-GGGHHHHHHHTTCE
T ss_pred h-hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHCCCC
Confidence 4 77778899999999999999999999753211 112223333322111 11111111 12345678889998
Q ss_pred EEE
Q 002884 612 IYR 614 (870)
Q Consensus 612 I~r 614 (870)
+..
T Consensus 192 ~v~ 194 (276)
T 3mgg_A 192 KIR 194 (276)
T ss_dssp EEE
T ss_pred eEE
Confidence 876
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-14 Score=140.88 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..+.... ......+...+...+|+++++||+|+|..+ +++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~ 128 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINS-LEW 128 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESC-TTS
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcCh-Hhh
Confidence 4779999999999999999876 8999999999876665321 122334455566888999999999999864 777
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc-cccccchhHHHHHHHHHhhccceEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN-LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~-la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
..++..+|.++.|+|||||+|+++...... .... ..|..... ......+. .......+.++||.+..
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAILGPTA-KPRE-NSYPRLYGKDVVCNTMM-PWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECTTC-GGGG-GGGGGGGTCCCSSCCCC-HHHHHHHHHHTTEEEEE
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEEcCCcc-hhhh-hhhhhhccccccccCCC-HHHHHHHHHHcCCEEEE
Confidence 788899999999999999999998532221 1111 11111111 01101111 22345678889998877
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=137.47 Aligned_cols=145 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++.... ....+...+...+|++ ++||+|+|+.+ +++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~-l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTIVSTYA-FHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEEEEESC-GGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEEEECcc-hhc
Confidence 5789999999999999999875 89999999998876653321 1233444556788888 89999999864 777
Q ss_pred ccChHH--HHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhc--------ccccccchhHHHHHHHHHhhccceEEE
Q 002884 545 HIDGGK--LLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMS--------NLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 545 ~~D~~~--vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~--------~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
..+... +|.++.|+|||||+|++..+. ..........+..+. .......+.........+.++||.+..
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTI-FADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEEC-BSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEecc-ccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 776655 999999999999999998533 222222221111110 000011111233566788999998877
Q ss_pred ecCc
Q 002884 615 KPTT 618 (870)
Q Consensus 615 kgf~ 618 (870)
....
T Consensus 198 ~~~~ 201 (220)
T 3hnr_A 198 TRLN 201 (220)
T ss_dssp EECS
T ss_pred eecc
Confidence 4443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=147.10 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=100.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+++ .|+|+|+++.++..|+. .+...++. ..+...+...+|+++++||+|+|+.+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR-RARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 46789999999999999888764 89999999999988874 44455654 34445566888999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++. +...+|.++.|+|||||+|++.+.............+..+...... .+.........+.++||.+..
T Consensus 195 -l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~l~~aGf~~~~ 265 (312)
T 3vc1_A 195 -TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC-NIHSRREYLRAMADNRLVPHT 265 (312)
T ss_dssp -GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC-CCCBHHHHHHHHHTTTEEEEE
T ss_pred -hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC-CCCCHHHHHHHHHHCCCEEEE
Confidence 6655 6899999999999999999998533222111111112111111100 111133556778899998776
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=144.22 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..+...... . ....+...+...+|+++++||+|+|..+ +
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 130 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-N-NKIIFEANDILTKEFPENNFDLIYSRDA-I 130 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-C-TTEEEEECCTTTCCCCTTCEEEEEEESC-G
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-C-CCeEEEECccccCCCCCCcEEEEeHHHH-H
Confidence 46789999999999999888764 899999999987766532111 1 2234445566788999999999999864 6
Q ss_pred ccc--cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWH--IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~--~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
++. .+...+|.++.|+|||||+|++....... .......+.......+ ............+..+||.+..
T Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 131 LALSLENKNKLFQKCYKWLKPTGTLLITDYCATE-KENWDDEFKEYVKQRK-YTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC-GGGCCHHHHHHHHHHT-CCCCCHHHHHHHHHHTTCEEEE
T ss_pred HhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC-cccchHHHHHHHhcCC-CCCCCHHHHHHHHHHcCCeEEE
Confidence 666 67799999999999999999998532222 1111111211111011 1111133456678889998766
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=136.55 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=95.3
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+.+|||||||+|.++..|+.. .|+|+|+++.|+..++. +.....+...+...+|+++++||+|+|..+ +++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQ-----THPSVTFHHGTITDLSDSPKRWAGLLAWYS-LIHM 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHH-----HCTTSEEECCCGGGGGGSCCCEEEEEEESS-STTC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH-----hCCCCeEEeCcccccccCCCCeEEEEehhh-HhcC
Confidence 679999999999999999876 89999999998766553 233344455566788898999999999865 5555
Q ss_pred c--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhccc-ccccchhHHHHHHHHHhhccceEEEe
Q 002884 546 I--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNL-TVSMCWELVTIKMDKLNSAGFAIYRK 615 (870)
Q Consensus 546 ~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~l-a~~mcW~~va~~~~~L~daGfaI~rk 615 (870)
. +...+|.++.|+|||||+|+++...... .. .+... .....+. .......+.++||.+...
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~-------~~~~~~~~~~~~~-~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 116 GPGELPDALVALRMAVEDGGGLLMSFFSGPS-LE-------PMYHPVATAYRWP-LPELAQALETAGFQVTSS 179 (203)
T ss_dssp CTTTHHHHHHHHHHTEEEEEEEEEEEECCSS-CE-------EECCSSSCEEECC-HHHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEccCCc-hh-------hhhchhhhhccCC-HHHHHHHHHHCCCcEEEE
Confidence 4 6799999999999999999998533221 11 11110 1111122 235566788899998873
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=143.43 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=93.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++..... . ....+...+...+|+++++||+|+|..+ +
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 168 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-M-PVGKFILASMETATLPPNTYDLIVIQWT-A 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-S-SEEEEEESCGGGCCCCSSCEEEEEEESC-G
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-C-CceEEEEccHHHCCCCCCCeEEEEEcch-h
Confidence 45789999999999999888764 699999999988777643221 1 1223344456778898999999999865 6
Q ss_pred ccc--cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEe
Q 002884 543 PWH--IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615 (870)
Q Consensus 543 hw~--~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rk 615 (870)
++. .+...+|.++.|+|||||+|++.......... + .........+ ........+.++||.+.+.
T Consensus 169 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~--~~~~~~~~~~-~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF-----L--VDKEDSSLTR-SDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE-----E--EETTTTEEEB-CHHHHHHHHHHHTCCEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-----e--ecccCCcccC-CHHHHHHHHHHCCCEEEEe
Confidence 655 34689999999999999999998532111000 0 0000111111 1234566778899988773
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=141.94 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=99.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..++... ....+...+...+|+ +++||+|+|+. +++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~fD~v~~~~-~l~ 128 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV-DKPLDAVFSNA-MLH 128 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC-SSCEEEEEEES-CGG
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc-CCCcCEEEEcc-hhh
Confidence 35789999999999999988764 8999999999887765321 223455666677887 57899999986 488
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--------cccccchhHHHHHHHHHhhccceEEE
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--------LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--------la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
|..++..+|.++.|+|||||+|++.. +....+......+..... ......+.........+..+||.+..
T Consensus 129 ~~~d~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 206 (279)
T 3ccf_A 129 WVKEPEAAIASIHQALKSGGRFVAEF-GGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTY 206 (279)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE-ECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEE
T ss_pred hCcCHHHHHHHHHHhcCCCcEEEEEe-cCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEE
Confidence 88899999999999999999999984 333344444333322110 11111111233456678889998866
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=140.71 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=94.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.......+....+...+...+++++++||+|+|..+ ++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV-IG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-GG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch-hh
Confidence 5789999999999999988765 7999999999988876443222111223444556778888889999999864 66
Q ss_pred cccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 544 WHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 544 w~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+..+. ..+|.++.|+|||||+|++.+..... ...|.. ....... ........+.++||.+..
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~~~---~~~~~~~-~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-----GVILDD---VDSSVCR-DLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-----SEEEET---TTTEEEE-BHHHHHHHHHHTTCCEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-----cceecc---cCCcccC-CHHHHHHHHHHcCCeEEE
Confidence 66554 48999999999999999998532221 000111 1111111 233456678889998877
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=134.77 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC------CcEEEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI------PAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl------~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++. .+...++ ...+...+...+++++++||+|+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 5789999999999999999875 89999999998877763 3333333 1234455567889999999999998
Q ss_pred ccccccccChH---HHHHHHHhhcCCCcEEEEEECCC
Q 002884 539 RCRVPWHIDGG---KLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 539 ~~alhw~~D~~---~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
.+ +++..++. .+|.++.|+|||||+|++.....
T Consensus 109 ~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 109 AF-LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SC-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ch-hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 54 66666766 89999999999999999985433
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=139.82 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=88.0
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L 525 (870)
+..++...+.. ..++.+|||||||+|.++..|++. .|+|+|+++.++..++.. +...+....+.+.+...+
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~ 84 (284)
T 3gu3_A 9 YVSFLVNTVWK---ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATEI 84 (284)
T ss_dssp HHHHHHHTTSC---CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHhc---cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhhc
Confidence 44555444322 346789999999999999998763 799999999998887743 333344344455566778
Q ss_pred CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 526 QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|++ ++||+|+|..+ +++..+...+|.+++|+|||||+|++..+.
T Consensus 85 ~~~-~~fD~v~~~~~-l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 85 ELN-DKYDIAICHAF-LLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCS-SCEEEEEEESC-GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CcC-CCeeEEEECCh-hhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 884 68999999864 777788999999999999999999998554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.7e-13 Score=132.97 Aligned_cols=136 Identities=20% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..++... ...+++.+ +...+...+++++++||+|+++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV-NKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence 3578999999999998888764 37999999999998887544 44455444 44455678889999999999986
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+ +++..+...+|.++.|+|||||+|++........... ..... .+ ........+..+||.+.+
T Consensus 115 ~-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~~~~--~~-~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 115 T-FHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG--------PPPEE--VY-SEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp C-GGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS--------CCGGG--SC-CHHHHHHHHHHTTCEEEE
T ss_pred h-hhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccC--------Cchhc--cc-CHHHHHHHHHHCCCEEEE
Confidence 5 6777888999999999999999999985322211000 00001 11 122445667888998776
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=140.77 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEE-EEcCcccCC-CCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAIS-AVMGTKRLQ-FPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~-~v~dae~LP-fpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|+. .+...++ +.+. ...+...++ +++++||+|+|..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~- 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQ-AAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV- 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC-
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch-
Confidence 3679999999999999999875 89999999999988874 3444455 3444 444556676 78899999999864
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..++..+|.++.|+|||||+|++...
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 77778899999999999999999999843
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=135.21 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=78.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
..++.+|||||||+|.++..|+.. .|+|+|+++.++..++... ...+ ...+...+...++++ ++||+|+|+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~ 118 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RGNL-KVKYIEADYSKYDFE-EKYDMVVSALS 118 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CSCT-TEEEEESCTTTCCCC-SCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-ccCC-CEEEEeCchhccCCC-CCceEEEEeCc
Confidence 345789999999999999888764 8999999999887776332 1122 334445556788877 89999999864
Q ss_pred ccccccChH--HHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDGG--KLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~~--~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..+.. .+|.++.|+|||||+|++++.
T Consensus 119 -l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 119 -IHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp -GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 66665554 599999999999999999853
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-13 Score=135.53 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.|+..+... .....+...+...+| ++++||+|+|+. .
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~ 104 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-PAQKADLLYANA-V 104 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-CSSCEEEEEEES-C
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-ccCCcCEEEEeC-c
Confidence 4578999999999999888875 3899999999988766532 223445555667777 788999999986 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+||..+...+|.++.|+|||||+|+++.+
T Consensus 105 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 105 FQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp GGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 88888899999999999999999999854
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-13 Score=139.40 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHh---cC--CEEEEeCChhhHHHHHHHHHHH-cCCC-cEEEEcCcccCCCCC------Ccee
Q 002884 467 YTRVSLDVGCGVASFGGYLF---ER--DVLTMSFAPKDEHDAQIQFALE-RGIP-AISAVMGTKRLQFPR------NVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La---~r--~VtgVDiSp~ml~~A~vq~A~e-rgl~-~~~~v~dae~LPfpd------~SFD 533 (870)
++.+|||||||+|.++..|+ .. .|+|+|+++.++..|+...... .+.+ ..+...+...+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 67899999999999999998 33 8999999999998887544432 1223 344555667888877 8999
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|+|+.+ +||. +...+|.++.|+|||||+|++.
T Consensus 116 ~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 116 MITAVEC-AHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeHhhH-HHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 9999864 7777 8999999999999999999983
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=137.72 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEE-EEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AIS-AVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~-~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|++. +|+|+|+++.++..|+. .+...+++ .+. ...+...+ +++||+|+|+.+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~ 146 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA 146 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence 46789999999999999888764 89999999999988874 44455654 333 34444444 789999999865
Q ss_pred ccccccCh---------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDG---------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~---------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..++ ..+|.++.|+|||||+|++...
T Consensus 147 -~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 147 -FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp -GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred -HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 6666443 7999999999999999999853
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=148.10 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=111.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc----C-C--CcEEE-EcCcccC------CC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER----G-I--PAISA-VMGTKRL------QF 527 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er----g-l--~~~~~-v~dae~L------Pf 527 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|+....... | . +.+.+ ..+...+ |+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 5789999999999988877652 89999999999988775443321 2 1 33444 4455665 89
Q ss_pred CCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHH----HHHhhcccccccchhHHHHHHH
Q 002884 528 PRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVE----IWNAMSNLTVSMCWELVTIKMD 603 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~----~w~~~~~la~~mcW~~va~~~~ 603 (870)
++++||+|+++. ++++..+...+|.++.|+|||||+|+++.......+..... .|... ....+.+ .....
T Consensus 163 ~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~ 236 (383)
T 4fsd_A 163 PDSSVDIVISNC-VCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGEC--LGGALYL---EDFRR 236 (383)
T ss_dssp CTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTT--CTTCCBH---HHHHH
T ss_pred CCCCEEEEEEcc-chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcc--cccCCCH---HHHHH
Confidence 999999999985 58888889999999999999999999985443333333222 12211 1111222 24466
Q ss_pred HHhhccceEEEecCchhHHhhhcCCCCCCCCCCCCCCCcccCCcccccccCCCc
Q 002884 604 KLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVD 657 (870)
Q Consensus 604 ~L~daGfaI~rkgf~~sCy~~r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~ 657 (870)
.+.++||.+.+-- +..+....|..+..+|.++..+
T Consensus 237 ll~~aGF~~v~~~-------------------~~~~~~~~~~~~~~~l~~~~~~ 271 (383)
T 4fsd_A 237 LVAEAGFRDVRLV-------------------SVGPVDVSDPQLRKLVPDVQFY 271 (383)
T ss_dssp HHHHTTCCCEEEE-------------------EEEEECCCCHHHHTTSTTCCEE
T ss_pred HHHHCCCceEEEE-------------------eccccccCCHhHHHHhcCCcee
Confidence 7888999765511 1223445566666777766655
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=139.02 Aligned_cols=101 Identities=7% Similarity=-0.135 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHH------------cCCCcEEEEcCcccCCCCC-Cc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALE------------RGIPAISAVMGTKRLQFPR-NV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~e------------rgl~~~~~v~dae~LPfpd-~S 531 (870)
++.+|||+|||+|.++..|++. .|+|+|+|+.|+..|+.+.... ......+.+.+...+|+++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 5789999999999999999864 8999999999998876432210 1223455566778888875 89
Q ss_pred eeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 532 FDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
||+|++..+ +++... ...++.+++|+|||||++++.
T Consensus 102 fD~v~~~~~-l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 102 CAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEECcc-hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999754 554432 357899999999999985544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=131.92 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-----cEE-EEcCcccCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-----AIS-AVMGTKRLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-----~~~-~v~dae~LPfpd~SFDlV~ 536 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++... ...+++ .+. ...+...++++.++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 5789999999999999999864 7999999999998887433 333332 233 4444566667778999999
Q ss_pred ecccccccccCh--HHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG--GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+.+ +++..++ ..+|.++.|+|||||+|+++
T Consensus 108 ~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 108 VIEV-IEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp EESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred eHHH-HHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 9864 6666644 79999999999999987776
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=130.96 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=95.3
Q ss_pred CCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccccC
Q 002884 468 TRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHID 547 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D 547 (870)
+.+|||||||+|.++..|+.. +++|+++.++..++. ++ ..+...+...+|+++++||+|++..+ +++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~-----~~--~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARK-----RG--VFVLKGTAENLPLKDESFDFALMVTT-ICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHH-----TT--CEEEECBTTBCCSCTTCEEEEEEESC-GGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHh-----cC--CEEEEcccccCCCCCCCeeEEEEcch-HhhccC
Confidence 679999999999999999887 999999998766553 23 34455566778888899999999864 777788
Q ss_pred hHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 548 GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 548 ~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+..+|.++.++|+|||+|+++.+........................+.........+..+||.+..
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 8999999999999999999985443222211111110000000111111233566778889998876
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=140.64 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=82.9
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp 528 (870)
+.+.+...++ ..++.+|||||||+|.++..|++. .|+|+|+++.|+..+. .+. ...+.+.+...+|++
T Consensus 22 ~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~-~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 22 IVNAIINLLN----LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-----VHP-QVEWFTGYAENLALP 91 (261)
T ss_dssp HHHHHHHHHC----CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-----CCT-TEEEECCCTTSCCSC
T ss_pred HHHHHHHHhC----CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-----hcc-CCEEEECchhhCCCC
Confidence 4444444433 246789999999999999999875 8999999998765443 222 334444556889999
Q ss_pred CCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 529 RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++||+|+|..+ +++..+...+|.+++|+|| ||++++...
T Consensus 92 ~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 92 DKSVDGVISILA-IHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TTCBSEEEEESC-GGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCCEeEEEEcch-HhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 999999999865 6667889999999999999 998777643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=139.07 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc--
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-- 523 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-- 523 (870)
..+...+.+.+. .++.+|||||||+|.++.+|++. .|++||+++.++..|+. .+...+....+...+..
T Consensus 47 ~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~-~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHH-HHhhCCCceEEEeehHHhh
Confidence 344455555443 36889999999999999999875 79999999999888773 44444443333444432
Q ss_pred cCCCCCCceeEEEecc----cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 524 RLQFPRNVFDLVHCAR----CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 524 ~LPfpd~SFDlV~Ss~----~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..++++++||.|++-. ..+++..+...++.+++|+|||||+|+|.
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 3468899999997521 11223355689999999999999999985
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=136.06 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++.... .....+...+...+|+++++||+|+|+. ++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 118 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSL-AL 118 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEES-CG
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEch-hh
Confidence 36789999999999999999875 79999999998877653222 2233445556688899999999999986 47
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..+...+|.++.|+|||||+|+++.
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 119 HYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 777889999999999999999999984
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=129.30 Aligned_cols=98 Identities=24% Similarity=0.241 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
++.+|||||||+|.++..| .. .|+++|+++.|+..++... ....+...+...+|+++++||+|++.. .+++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFT-TLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEES-CTTTC
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcC-hhhhc
Confidence 5789999999999999988 66 8999999999887665322 223444455678899999999999985 47777
Q ss_pred cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.++..+|.++.|+|||||+|+++.+.
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 88999999999999999999998543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=131.20 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++... ++ .+...+...++ ++++||+|+|+.+ +++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~--~~~~~d~~~~~-~~~~fD~v~~~~~-l~~ 114 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GR--PVRTMLFHQLD-AIDAYDAVWAHAC-LLH 114 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TS--CCEECCGGGCC-CCSCEEEEEECSC-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CC--ceEEeeeccCC-CCCcEEEEEecCc-hhh
Confidence 4779999999999999999876 8999999999887776433 32 33455566777 7889999999865 555
Q ss_pred cc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhcc-ceEEE
Q 002884 545 HI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAG-FAIYR 614 (870)
Q Consensus 545 ~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daG-faI~r 614 (870)
.. +...+|.++.|+|||||+|+++.......... .................+.++| |.+..
T Consensus 115 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 115 VPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD---------KLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC---------TTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred cCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc---------ccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 55 56799999999999999999985443322111 0000011111234566778889 88776
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-13 Score=132.26 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=79.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
..++.+|||||||+|.++..|+.. .|+|+|+++.++..++..... .+ ...+...+...++ ++++||+|+|+.+ +
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~-l 124 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-WS-HISWAATDILQFS-TAELFDLIVVAEV-L 124 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-CS-SEEEEECCTTTCC-CSCCEEEEEEESC-G
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-CC-CeEEEEcchhhCC-CCCCccEEEEccH-H
Confidence 345789999999999999999886 899999999988877643221 11 2344455566776 6789999999864 7
Q ss_pred ccccCh---HHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDG---GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~---~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..++ ..+|.++.|+|||||+|+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 125 YYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 777766 5779999999999999999843
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=134.41 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCC-cEE-EEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIP-AIS-AVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~-~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+. ..|+|+|+++.++..++.. +...++. .+. ...+...+| ++||+|+|..+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQL-VANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 4678999999999999988874 3899999999998887743 3334432 333 344455555 78999999865
Q ss_pred ccccc--cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWH--IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~--~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++. .+...+|.++.|+|||||+|++...
T Consensus 139 -l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 139 -FEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp -GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -hhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5555 5678999999999999999999853
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=140.04 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH-----------------HcCCCcEEEEcCcccCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL-----------------ERGIPAISAVMGTKRLQ 526 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~-----------------ergl~~~~~v~dae~LP 526 (870)
.++.+|||+|||+|..+..|++. .|+|+|+|+.|+..|+.+... ..+....+.+.+...++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 35789999999999999999876 899999999999877533221 01223445556677888
Q ss_pred CCC-CceeEEEeccccccccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 527 FPR-NVFDLVHCARCRVPWHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 527 fpd-~SFDlV~Ss~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++ ++||+|++..+ +++.. +...++.++.|+|||||+|++.
T Consensus 147 ~~~~~~FD~V~~~~~-l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 147 RANIGKFDRIWDRGA-LVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCCEEEEEEhhh-hhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 764 89999998754 44443 2368999999999999999755
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=133.26 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL 525 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L 525 (870)
..+...+...++ .++.+|||||||+|.++..|+.. .|+|+|+++.|+..|+. .+...+....+...+...+
T Consensus 47 ~~~~~~l~~~~~-----~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHhhcC-----CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHh
Confidence 344454444432 35789999999999999999774 79999999999988874 3333343233344445666
Q ss_pred --CCCCCceeEEEe-cccccccc----cChHHHHHHHHhhcCCCcEEEEE
Q 002884 526 --QFPRNVFDLVHC-ARCRVPWH----IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 --Pfpd~SFDlV~S-s~~alhw~----~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+++++||+|++ .+. ++.+ .+...+|.+++|+|||||+|++.
T Consensus 121 ~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 121 APTLPDGHFDGILYDTYP-LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGSCTTCEEEEEECCCC-CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred hcccCCCceEEEEECCcc-cchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 899999999999 433 2211 12247799999999999999986
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=128.73 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. +|+|+|+++.++..++. .+.+.+.++. +...+ +++++||+|+|+.+ +
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-----~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~-l 117 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR-----HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHW-L 117 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG-----GCCTTEEEEECCTTSC-CCSSCEEEEEEESC-G
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh-----cCCCCeEEEecccccC-CCCCceeEEEEech-h
Confidence 35679999999999999988764 89999999998766653 5545555544 45555 78899999999864 6
Q ss_pred ccccCh--HHHHHHHHhhcCCCcEEEEEECC
Q 002884 543 PWHIDG--GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 543 hw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
++..+. ..+|.++.|+|||||+|++....
T Consensus 118 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 118 AHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 666664 89999999999999999998543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=129.45 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCchhH-HHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFG-GYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a-~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++ ..+... .|+|+|+++.|+..++... ...+....+...+...+|+++++||+|+|..+ +
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS-RENNFKLNISKGDIRKLPFKDESMSFVYSYGT-I 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHH-HHHTCCCCEEECCTTSCCSCTTCEEEEEECSC-G
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEECchhhCCCCCCceeEEEEcCh-H
Confidence 35789999999999874 444433 8999999999998887443 33444445556667788998999999999854 5
Q ss_pred ccc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++. .+...+|.++.|+|||||+|++..
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 544 456899999999999999999984
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=130.31 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC------CcEEEEcCcccCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI------PAISAVMGTKRLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl------~~~~~v~dae~LPfpd~SFDlV~ 536 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++.... ..++ ...+...+...+++++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK-IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT-GGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH-hhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 5789999999999999999863 79999999999988875432 2232 23344445567777788999999
Q ss_pred ecccccccccCh--HHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG--GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+.+ +++..++ ..+|.++.|+|||||+|++.
T Consensus 108 ~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 108 VIEV-IEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EHHH-HHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 9864 6666544 68999999999999977765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=125.56 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC-CCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ-FPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP-fpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.+ .|+|+|+++.|+..|+.. +...+++.+.++.+ ...++ +.+++||+|+++...
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQR-LSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 35789999999999999999875 899999999999988744 44455555555544 34433 557889999987433
Q ss_pred ccc-------c-cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPW-------H-IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw-------~-~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++. . .+...+|.++.|+|||||+|++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 332 1 2235788999999999999999853
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=128.02 Aligned_cols=103 Identities=23% Similarity=0.283 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc-cc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR-VP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a-lh 543 (870)
++.+|||||||+|.++..|+.. +|+++|+++.++..++... ...+....+...+...+++++++||+|+|+.+. ++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 3789999999999999988876 8999999999998887543 333434455555667788888899999998542 22
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+..+...+|.++.++|||||+|++..+
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 224568899999999999999999843
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=135.39 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..++.. ... .+...+...+|+++++||+|+|...++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-----~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK-----GVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH-----TCS-CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhh-----cCC-CEEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 5789999999999999999876 899999999988776532 212 25556677889999999999997666777
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
..++..+|.++.|+|||||+|++..+
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 67789999999999999999999853
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=136.97 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC----CCcEEEEcCc
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG----IPAISAVMGT 522 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg----l~~~~~v~da 522 (870)
..+.++|...+.. .++.+|||||||+|.++..|+.. .|+|+|+++.|+..|+.+...... ....+...+.
T Consensus 43 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 43 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhcc----cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 3455666665543 25689999999999999999876 899999999999888754322111 1123344455
Q ss_pred ccCC---CCCCceeEEEecccccccccC-------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 523 KRLQ---FPRNVFDLVHCARCRVPWHID-------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 523 e~LP---fpd~SFDlV~Ss~~alhw~~D-------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+| +++++||+|+|...++++..+ ...+|.+++|+|||||+|++..
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6677 888999999997224676777 7899999999999999999984
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=124.70 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. +...+++.+ +...+...+++ +++||+|+++.+ ++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~-l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI-KSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV-LM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC-GG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhCCCCCcEEEEcchhhCCC-CCCceEEEEcch-hh
Confidence 4679999999999999998875 899999999999888744 334455334 44455677787 789999999864 66
Q ss_pred ccc--ChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHI--DGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~--D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.. +...+|.++.|+|||||+|++...
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 554 568999999999999999887643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=129.65 Aligned_cols=115 Identities=20% Similarity=0.347 Sum_probs=87.1
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp 528 (870)
+.+.+...+... ..++.+|||||||+|.++..|+.. .|+|+|+++.|+..++... ...+....+...+...++++
T Consensus 23 ~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 23 WSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNIN 99 (246)
T ss_dssp HHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCCS
T ss_pred HHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCcc
Confidence 445555554432 235789999999999999999875 8999999999998887543 33444444555566778877
Q ss_pred CCceeEEEecccccccc---cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 529 RNVFDLVHCARCRVPWH---IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~---~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|+|+..++++. .+...+|.++.|+|||||+|++..
T Consensus 100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8899999985136666 456899999999999999999974
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=124.83 Aligned_cols=96 Identities=18% Similarity=0.284 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++.. .+.+.++.++ +|+++++||+|+++.+ ++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d--~~~~~~~~D~v~~~~~-l~ 86 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK------FDSVITLSDP--KEIPDNSVDFILFANS-FH 86 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH------CTTSEEESSG--GGSCTTCEEEEEEESC-ST
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh------CCCcEEEeCC--CCCCCCceEEEEEccc-hh
Confidence 35679999999999999999876 899999999987766533 3344455544 8889999999999864 67
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+..+...+|.++.|+|||||+|++...
T Consensus 87 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 87 DMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp TCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 677889999999999999999999853
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=127.66 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++ +|||||||+|.++..|+.. .|+++|+++.++..++... ...+....+...+...+++++++||+|+|+. .|+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~ 105 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA-QEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL 105 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH-HHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC
Confidence 35 9999999999999999875 8999999999998887443 3345444444555677888889999999964 454
Q ss_pred c-cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 545 H-IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 545 ~-~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. .+...+|.++.++|||||+|++...
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3 3558999999999999999999853
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=138.15 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-------cEEEEcCc------ccC--CCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-------AISAVMGT------KRL--QFP 528 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-------~~~~v~da------e~L--Pfp 528 (870)
++.+|||||||+|..+..++.. .|+|+|+|+.|+..|+.+. ...+.. ..+.+.+. ..| +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-Hhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999755544432 7999999999999998644 333322 11223332 222 467
Q ss_pred CCceeEEEecccccccc---cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 529 RNVFDLVHCARCRVPWH---IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~---~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++||+|+|..+ +||. .+...+|.++.|+|||||+|++++
T Consensus 127 ~~~FD~V~~~~~-lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 127 FGKFNIIDWQFA-IHYSFHPRHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SSCEEEEEEESC-GGGTCSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEECch-HHHhCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 889999999864 7764 345899999999999999999984
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=128.97 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=95.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc--CCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR--LQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~--LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..+. ++.. .+...+... +|+++++||+|+++.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~-----~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~- 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAK-----EKLD--HVVLGDIETMDMPYEEEQFDCVIFGDV- 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHH-----TTSS--EEEESCTTTCCCCSCTTCEEEEEEESC-
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-----HhCC--cEEEcchhhcCCCCCCCccCEEEECCh-
Confidence 35789999999999999998875 8999999998765544 2221 334445443 7788899999999864
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--------cccccchhHHHHHHHHHhhccceEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--------LTVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--------la~~mcW~~va~~~~~L~daGfaI~ 613 (870)
+++..++..+|.++.++|+|||+|+++.+. ..............-. ..+...+. .......+..+||.+.
T Consensus 103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIKQNGVILASIPN-VSHISVLAPLLAGNWTYTEYGLLDKTHIRFFT-FNEMLRMFLKAGYSIS 180 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEEEEEEEEEEEEC-TTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCC-HHHHHHHHHHTTEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCCEEEEEeCC-cchHHHHHHHhcCCceeccCCCCCcceEEEec-HHHHHHHHHHcCCeEE
Confidence 777778899999999999999999998533 3333322222111000 01111122 3355677888999887
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
.
T Consensus 181 ~ 181 (230)
T 3cc8_A 181 K 181 (230)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=126.55 Aligned_cols=139 Identities=19% Similarity=0.294 Sum_probs=92.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC---CCCC-CceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL---QFPR-NVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L---Pfpd-~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++. ++ ...+...+...+ ++.. .+||+|+|+.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARA-----AG-AGEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHH-----TC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----hc-ccccchhhHHhhcccccccCCCccEEEECch
Confidence 4689999999999999999876 89999999998766653 22 223344443333 5544 45999999864
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH--HHHHH-----Hhhccc--ccccchhHHHHHHHHHhhccce
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE--DVEIW-----NAMSNL--TVSMCWELVTIKMDKLNSAGFA 611 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E--l~~~w-----~~~~~l--a~~mcW~~va~~~~~L~daGfa 611 (870)
++ +.+...+|.++.|+|||||+|+++...... ... ....| ...... .....+.........+.++||.
T Consensus 126 -l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 202 (227)
T 3e8s_A 126 -LL-HQDIIELLSAMRTLLVPGGALVIQTLHPWS-VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202 (227)
T ss_dssp -CC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTT-TCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEE
T ss_pred -hh-hhhHHHHHHHHHHHhCCCeEEEEEecCccc-cCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCe
Confidence 66 788899999999999999999998543221 111 01111 111100 1111222344667788999999
Q ss_pred EEE
Q 002884 612 IYR 614 (870)
Q Consensus 612 I~r 614 (870)
+..
T Consensus 203 ~~~ 205 (227)
T 3e8s_A 203 LVS 205 (227)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=136.20 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-CC----------------------------
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-GI---------------------------- 513 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-gl---------------------------- 513 (870)
.++.+|||||||+|.++..++.. .|+|+|+|+.|+..|+....... ++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 35679999999999877666543 69999999999998764321110 00
Q ss_pred CcE-EEEcCccc-CCCC---CCceeEEEecccccccc----cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH
Q 002884 514 PAI-SAVMGTKR-LQFP---RNVFDLVHCARCRVPWH----IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN 584 (870)
Q Consensus 514 ~~~-~~v~dae~-LPfp---d~SFDlV~Ss~~alhw~----~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~ 584 (870)
... +...+... .|++ .++||+|+|+.+ +|+. .+...+|.+++|+|||||+|++++... ..... +.
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~-~~~~~----~g 207 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR-LPSYM----VG 207 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS-CCEEE----ET
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHH-HHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec-Cccce----eC
Confidence 011 34455433 4543 678999999976 6553 344789999999999999999985321 11100 00
Q ss_pred hhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 585 AMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 585 ~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
. ... ....+. .......+..+||.+.+
T Consensus 208 ~-~~~-~~~~~~-~~~l~~~l~~aGF~i~~ 234 (263)
T 2a14_A 208 K-REF-SCVALE-KGEVEQAVLDAGFDIEQ 234 (263)
T ss_dssp T-EEE-ECCCCC-HHHHHHHHHHTTEEEEE
T ss_pred C-eEe-eccccC-HHHHHHHHHHCCCEEEE
Confidence 0 000 011122 22456778889998876
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=132.50 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|+.. .....+...+...+++ +++||+|+|+...+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~ 123 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR-----NPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGH 123 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTTCCC-SCCEEEEEECTTGGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh-----CCCCEEEECChHHCCc-cCCcCEEEEcCchhhh
Confidence 4689999999999999999876 799999999988766532 2234455566677887 7889999998624776
Q ss_pred cc---ChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HI---DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~---D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. +...+|.++.++|||||+|++.
T Consensus 124 ~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 124 LAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp SCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 63 4578999999999999999997
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=136.64 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=79.3
Q ss_pred CCCCEEEEECCCCchhHHHHh--c---CCEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLF--E---RDVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La--~---r~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+ . ..|+|+|+++.++..++. .+...++. ..+...+...+|++ ++||+|+|+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 457899999999999999884 2 289999999999988874 33444544 33445556788888 899999998
Q ss_pred ccccccccChH---HHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGG---KLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~---~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+ +++..++. .+|.++.|+|||||+|+++.
T Consensus 195 ~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 195 GL-NIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp SS-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred Ch-hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 64 55555664 37999999999999999984
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=134.27 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC----CCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG----IPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg----l~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+|||||||+|.++..|+.. .|+|+|+++.++..|+.+. ...+ ....+...+...+|+ +++||+|+|+..+
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 459999999999999999876 8999999999998887443 3333 234455556677887 6889999986555
Q ss_pred cccccC--hHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHID--GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++... ...+|.++.|+|||||+|++..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 666542 4899999999999999999984
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-12 Score=127.77 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
..+|||||||+|.++..|+.. .|+|+|+++.++..++...........+.++. +...++ ++++||+|+|+.+ +++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~-l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF-FCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS-TTT
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh-hhc
Confidence 459999999999999999876 89999999999888774433211122344444 455555 5568999999854 665
Q ss_pred cc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 545 HI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 545 ~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.. +...+|.++.|+|||||+|++.......... . ....+. .......+..+||.+..
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----------~--~~~~~~-~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG----------G--PPYKVD-VSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS----------C--SSCCCC-HHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC----------C--CCccCC-HHHHHHHHHHcCCeEEE
Confidence 55 6689999999999999999987533221100 0 000011 22345667888998876
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.5e-12 Score=121.14 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..++.. .|+++|+++.++..++.. +...++.. +.++.+...-++++++||+|+++..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~- 128 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN-IKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP- 128 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECchhcccccCCceEEEECCC-
Confidence 35789999999999999988864 899999999999888744 44455553 4444443222455788999999753
Q ss_pred ccc-ccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPW-HIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw-~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++ ..+...+|.++.++|+|||+|++...
T Consensus 129 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 554 24457899999999999999999843
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=129.54 Aligned_cols=100 Identities=24% Similarity=0.351 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++..... ....+...+...+++++++||+|++..+ +
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 117 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLA-L 117 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESC-G
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEecc-c
Confidence 35789999999999999988864 799999999987766532111 1233445556778888899999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..+...+|.++.++|||||+|+++.
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 777788999999999999999999984
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-12 Score=126.09 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|+... ...+....+...+...++++ ++||+|+|....+++.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 110 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP-EPVDAITILCDSLNYL 110 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGC
T ss_pred CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhc
Confidence 3589999999999999988875 8999999999998887543 33444445556666777776 7899999974246655
Q ss_pred ---cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 546 ---IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 546 ---~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+...+|.++.|+|||||+|++..
T Consensus 111 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 111 QTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp CSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 345789999999999999999974
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=130.78 Aligned_cols=100 Identities=12% Similarity=0.160 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++.. +...++. ..+...+...+| ++||+|+|..+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~ 164 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV-LASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA 164 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence 46789999999999999888753 899999999999888743 3444543 233344455554 78999999865
Q ss_pred ccccc--cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWH--IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~--~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++. .+...+|.++.|+|||||+|++..+
T Consensus 165 -l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 165 -FEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp -GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6655 4678999999999999999999854
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=126.59 Aligned_cols=115 Identities=26% Similarity=0.326 Sum_probs=85.0
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd 529 (870)
.+++...+.... ..++.+|||||||+|.++..|+.. .|+|+|+++.|+..++.. +...+....+...+...++++
T Consensus 27 ~~~~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~- 103 (252)
T 1wzn_A 27 IDFVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK- 103 (252)
T ss_dssp HHHHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-
T ss_pred HHHHHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-
Confidence 344455444321 235679999999999999998875 899999999999888744 344455555566666777765
Q ss_pred CceeEEEecccccccc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|+|..+.+++. .+...+|.++.++|||||+|++..
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 6799999864444443 245789999999999999999873
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=121.71 Aligned_cols=133 Identities=16% Similarity=0.062 Sum_probs=89.2
Q ss_pred CCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHH
Q 002884 432 GEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFA 508 (870)
Q Consensus 432 Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A 508 (870)
|..+..|.. .+........+.+...+.... ..++.+|||+|||+|.++..++.. .|+++|+++.++..|+.. +
T Consensus 12 g~~l~~~~~--~~rp~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~-~ 87 (189)
T 3p9n_A 12 GRRIAVPPR--GTRPTTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN-I 87 (189)
T ss_dssp TCEEECCSC--CC---CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH-H
T ss_pred CcEecCCCC--CCccCcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-H
Confidence 444555552 222233444445555443321 135789999999999999876654 699999999999988854 4
Q ss_pred HHcCCCcEEEEc-CcccCC--CCCCceeEEEecccccccc-cChHHHHHHHHh--hcCCCcEEEEEE
Q 002884 509 LERGIPAISAVM-GTKRLQ--FPRNVFDLVHCARCRVPWH-IDGGKLLLELNR--VLRPGGYFVWSA 569 (870)
Q Consensus 509 ~ergl~~~~~v~-dae~LP--fpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~R--VLKPGG~Lv~S~ 569 (870)
...+++.+.++. +...++ +++++||+|+++.. +++. .+...++.++.+ +|+|||+|++..
T Consensus 88 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 88 EALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP-YNVDSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp HHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred HHcCCCceEEEEccHHHHHhhccCCCccEEEECCC-CCcchhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 444554444444 444432 45789999999853 4443 456889999999 999999999984
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-13 Score=146.56 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEE--EcC-cccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISA--VMG-TKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~--v~d-ae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.|+..|+ +++++.... ..+ ...+|+++++||+|+|+.+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~-----~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v 180 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAR-----EKGIRVRTDFFEKATADDVRRTEGPANVIYAANT 180 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHH-----TTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHH-----HcCCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence 45789999999999999999876 8999999999775544 445543321 112 3567788899999999864
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..++..+|.+++|+|||||+|++..+.. ..+.+. ..|..+- ..+ ..+.........+..+||.+..
T Consensus 181 -l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~-~~~~~~-~~~~~~~-~~~-~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 181 -LCHIPYVQSVLEGVDALLAPDGVFVFEDPYL-GDIVAK-TSFDQIF-DEH-FFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp -GGGCTTHHHHHHHHHHHEEEEEEEEEEEECH-HHHHHH-TCGGGCS-TTC-CEECCHHHHHHHHHHTTEEEEE
T ss_pred -HHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh-HHhhhh-cchhhhh-hhh-hhcCCHHHHHHHHHHcCCEEEE
Confidence 7777899999999999999999999984332 111110 0111110 011 2222233456678899998877
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-12 Score=130.52 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++. .+...++...+...+...+++ +++||+|+|+.+ +++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~-~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAANI-QENYDFIVSTVV-FMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSS-GGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCCceEEEEeccccccc-cCCccEEEEccc-hhh
Confidence 5789999999999999999876 89999999999988874 444556655555566677776 788999999864 665
Q ss_pred ccC--hHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HID--GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D--~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+ ...+|.++.++|||||+|++..
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 533 3699999999999999988763
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=119.54 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++. .+...+++ .+....+. ..++...++||+|+++.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 45779999999999999988765 79999999999988874 44455665 44333333 34444448899999975
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ +++ ..++.++.++|||||+|++..
T Consensus 103 ~-~~~----~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 103 G-LTA----PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp --TTC----TTHHHHHHHTCCTTCEEEEEE
T ss_pred c-ccH----HHHHHHHHHhcCCCCEEEEEe
Confidence 4 443 689999999999999999984
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=138.50 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC------------------------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG------------------------------ 512 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg------------------------------ 512 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..|+........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4689999999999999888764 899999999999887743221110
Q ss_pred --------------------------C-CcEEEEcC-ccc-----CCCCCCceeEEEeccccccccc------ChHHHHH
Q 002884 513 --------------------------I-PAISAVMG-TKR-----LQFPRNVFDLVHCARCRVPWHI------DGGKLLL 553 (870)
Q Consensus 513 --------------------------l-~~~~~v~d-ae~-----LPfpd~SFDlV~Ss~~alhw~~------D~~~vL~ 553 (870)
. .++.++.+ ... +++.+++||+|+|..+ ++|.. +...+|.
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v-l~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL-TKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH-HHHhhhcCCHHHHHHHHH
Confidence 0 13444433 222 2367889999999854 55532 4578999
Q ss_pred HHHhhcCCCcEEEEE
Q 002884 554 ELNRVLRPGGYFVWS 568 (870)
Q Consensus 554 Ei~RVLKPGG~Lv~S 568 (870)
+++++|||||+|++.
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999997
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=129.67 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-C-cEEEEcCcccCCC-CCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI-P-AISAVMGTKRLQF-PRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl-~-~~~~v~dae~LPf-pd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..|+... ...+. . ..+...+...+|+ ++++||+|+|..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45789999999999988887753 7999999999998887433 33343 2 2344455677788 688999999986
Q ss_pred ccccc----ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPW----HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw----~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ +|+ ..+...+|.++.|+|||||+|++..
T Consensus 142 ~-l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 142 S-FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp C-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred h-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4 665 2445889999999999999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=124.22 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++..... .....+...+...+++++++||+|+++.+ +
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~-~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGT-L 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESH-H
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcc-h
Confidence 35789999999999999988765 799999999988877643321 12234455566778888899999998643 3
Q ss_pred ccc---------------cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWH---------------IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~---------------~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.. .+...+|.++.|+|||||.|++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 221 234789999999999999999984
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-12 Score=129.04 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-cc-CC--CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KR-LQ--FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~-LP--fpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|+.. .|+|+|+++.++..|. +.+...++.++.++.++ .. ++ +++++||+|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~-~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACL-ASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5679999999999999988753 6999999999999887 45556677666666553 43 34 788999999987
Q ss_pred ccccccccCh--------HHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDG--------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+. .+|+... ..+|.++.|+|||||+|++++
T Consensus 113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 43 5665432 259999999999999999984
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=132.24 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHH----------------HcCCC-------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFAL----------------ERGIP------------- 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~----------------ergl~------------- 514 (870)
++.+|||||||+|.++..++. ..|+|+|+|+.|+..|+..... ..+..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 578999999999996544433 3899999999999877642211 11100
Q ss_pred -cEEEEcCccc-CCC-----CCCceeEEEeccccccc----ccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHH
Q 002884 515 -AISAVMGTKR-LQF-----PRNVFDLVHCARCRVPW----HIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583 (870)
Q Consensus 515 -~~~~v~dae~-LPf-----pd~SFDlV~Ss~~alhw----~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w 583 (870)
..+..++... +|+ ++++||+|+|+.+ ++| ..+...+|.++.|+|||||+|++..... ....
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~-~~~~------ 222 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE-ESWY------ 222 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES-CCEE------
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhh-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecC-cceE------
Confidence 1223335444 664 4567999999864 777 4567899999999999999999974211 1110
Q ss_pred HhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 584 NAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 584 ~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
....................+..+||.+..
T Consensus 223 -~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 223 -LAGEARLTVVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp -EETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred -EcCCeeeeeccCCHHHHHHHHHHcCCeEEE
Confidence 000101001111123456678889998766
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=125.01 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChh------hHHHHHHHHHHHcCC-CcEEEEc-C---cccCCCCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPK------DEHDAQIQFALERGI-PAISAVM-G---TKRLQFPR 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~------ml~~A~vq~A~ergl-~~~~~v~-d---ae~LPfpd 529 (870)
.++.+|||||||+|.++..|+. ..|+|+|+++. ++..++... ...++ +.+.++. + ...+|+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~ 120 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLTVHFNTNLSDDLGPIAD 120 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceEEEECChhhhccCCCCC
Confidence 4678999999999999888865 37999999997 888777443 34444 3344444 3 35677888
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
++||+|+|+.+ +++..++..++..+.++++|||+|++....
T Consensus 121 ~~fD~v~~~~~-l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 121 QHFDRVVLAHS-LWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp CCCSEEEEESC-GGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred CCEEEEEEccc-hhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999999865 666677777777777777779999998543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=129.75 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=75.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC-----CceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR-----NVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd-----~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+.. +|+|+|+++.|+..++... ......+...+...+++.. ..||+|+++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEc
Confidence 35679999999999999999875 8999999999887776432 1112334444455544322 249999998
Q ss_pred cccccccc--ChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 RCRVPWHI--DGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. ++|+.. +...+|.++.|+|||||+|++...
T Consensus 132 ~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 T-GFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp S-SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred c-hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5 477666 568999999999999999888743
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=124.42 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..++.. .....+...+...+++ +++||+|+|....+++
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKR-----LPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHH-----CTTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHh-----CCCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 5789999999999999988875 799999999988766532 2223445555667777 6789999976545776
Q ss_pred cc---ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HI---DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~---D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. +...+|.++.++|||||+|++..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 63 34789999999999999999973
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=117.50 Aligned_cols=99 Identities=26% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. .....+...+...+++++++||+|+++...+++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQD-----FPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHh-----CCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 5789999999999999988875 899999999987766532 222344555667778888999999997334555
Q ss_pred c--cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 545 H--IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 545 ~--~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. .+...+|.++.++|+|||++++...
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 2347899999999999999999843
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=122.34 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
.++.+|||||||+|.++..|. ..|+++|+++. . ..+...+...+|+++++||+|+|+.+ +|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~--~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~- 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------------D--PRVTVCDMAQVPLEDESVDVAVFCLS-LMG- 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS-------------S--TTEEESCTTSCSCCTTCEEEEEEESC-CCS-
T ss_pred CCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------C--ceEEEeccccCCCCCCCEeEEEEehh-ccc-
Confidence 356799999999999998885 68999999986 1 23455566778999999999999865 664
Q ss_pred cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEec
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKP 616 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkg 616 (870)
.+...+|.++.++|+|||+|+++....... ........+..+||.+....
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---------------------~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFE---------------------DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGGCS---------------------CHHHHHHHHHHTTEEEEEEE
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCCCC---------------------CHHHHHHHHHHCCCEEEEEe
Confidence 788999999999999999999984321000 12234456778899887744
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=135.09 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+.. +|+++|+++.++..++. .+...++...+...+...+++++++||+|+|+.. +|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp-~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEALTEEARFDIIVTNPP-FHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC-CCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhccccCCCeEEEEECCc-hhh
Confidence 5679999999999999999875 89999999999988874 4445566656666666777777789999999854 555
Q ss_pred -----ccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 545 -----HIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 545 -----~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
..+...+|.++.++|||||+|+++...
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 234478999999999999999998544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=124.22 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC--CCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP--fpd~SFDlV~Ss~ 539 (870)
.+.+|||||||+|.++..|+.. .|+|+|+++.++..|.. .+...+++++.++.+ ...++ +++++||.|++++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~-~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4679999999999999888753 79999999999988874 455566665555554 45565 7788999999864
Q ss_pred cccccccC--------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHID--------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .+|... ...+|.++.|+|||||.|++.+
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3 455432 2689999999999999999983
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=121.01 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC--CCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP--fpd~SFDlV~Ss~ 539 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|+. .+...+++++.++. +...++ +++++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 5679999999999999888753 79999999999988874 44445655555544 456666 7788999999975
Q ss_pred ccccccc--------ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHI--------DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~--------D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .+|.. ....+|.++.++|||||+|++..
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 3 45532 12689999999999999999973
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=131.84 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=76.9
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc----ccCCCCCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT----KRLQFPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da----e~LPfpd~SFDlV 535 (870)
.+++.+|||||||+|.++..|++. .|+|+|+++.|+..+.. .+.++ +++..+... ...++..++||+|
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~-~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDR--RNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH-HSTTC--TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hhHhh--cCeeEEEEeccCccccccccceEEEE
Confidence 467999999999999999999863 79999999999987753 33332 334444332 4556778899999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++. ++++.+...++.++.|+|||||.|+++.
T Consensus 152 f~d---~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 152 YAD---VAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEC---CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEe---ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 975 3455567889999999999999999973
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=126.52 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-----------------------------
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI----------------------------- 513 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl----------------------------- 513 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..++..... .+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 35679999999999998888764 799999999999887643321 110
Q ss_pred -Cc-EEEEcCcccC-CCCC---CceeEEEecccccc----cccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHH
Q 002884 514 -PA-ISAVMGTKRL-QFPR---NVFDLVHCARCRVP----WHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583 (870)
Q Consensus 514 -~~-~~~v~dae~L-Pfpd---~SFDlV~Ss~~alh----w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w 583 (870)
.. .+...+...+ ++++ ++||+|+|+.+ ++ +..+...+|.++.|+|||||+|++....... ..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~------ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC-LDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YY------ 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EE------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhh-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eE------
Confidence 02 3444555443 4455 89999999865 55 3345689999999999999999998533211 00
Q ss_pred HhhcccccccchhHHHHHHHHHhhccceEEEe
Q 002884 584 NAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615 (870)
Q Consensus 584 ~~~~~la~~mcW~~va~~~~~L~daGfaI~rk 615 (870)
....................+.++||.+...
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 206 -MIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp -EETTEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -EcCCccccccccCHHHHHHHHHHCCCEEEEE
Confidence 0001000001111223456788899988773
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=119.05 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...+++ .+.++.+ ..........||+|++...
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~- 131 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG- 131 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-
Confidence 45789999999999999888875 89999999999988874 45556766 5555544 4442222357999998742
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ +.. ++.++.++|||||+|++..
T Consensus 132 ~----~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 132 G----SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp C----CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred c----cHH-HHHHHHHhcCCCcEEEEEe
Confidence 2 456 9999999999999999984
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=119.63 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=80.9
Q ss_pred ccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEE
Q 002884 444 FIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA-ISAV 519 (870)
Q Consensus 444 F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v 519 (870)
|..+.......+...+... ..++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...++.. .+..
T Consensus 39 f~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~ 115 (205)
T 3grz_A 39 FGTGNHQTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE-NAALNGIYDIALQK 115 (205)
T ss_dssp ---CCHHHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCCCEEEE
T ss_pred cCCCCCccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEe
Confidence 4444433344444444332 235789999999999999888864 79999999999988874 444455553 3333
Q ss_pred cCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 520 MGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 520 ~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+.. ++.+++||+|+++.. +++ ...+|.++.++|||||+|+++.
T Consensus 116 ~d~~--~~~~~~fD~i~~~~~-~~~---~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 116 TSLL--ADVDGKFDLIVANIL-AEI---LLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp SSTT--TTCCSCEEEEEEESC-HHH---HHHHGGGSGGGEEEEEEEEEEE
T ss_pred cccc--ccCCCCceEEEECCc-HHH---HHHHHHHHHHhcCCCCEEEEEe
Confidence 3333 345689999999753 332 4788999999999999999973
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=116.04 Aligned_cols=99 Identities=15% Similarity=0.018 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++.. +...+++.+.++.+ ..........||+|++...
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 117 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN-LKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS 117 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH-HHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence 46789999999999999888763 799999999999888744 44455555555544 3333333367999999743
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ +...+|.++.++|||||+|++..
T Consensus 118 -~~---~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 118 -GG---MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp -TT---CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -Cc---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 32 67899999999999999999984
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=122.50 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cccc----CCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKR----LQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~----LPfpd~SFDlV~ 536 (870)
.++.+|||||||+|.++..|++ ..|+|+|+++.|+..+. +.++.+ .++..+. +... .+++ ++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~-~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER--NNIIPLLFDASKPWKYSGIV-EKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC--SSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHhcC--CCeEEEEcCCCCchhhcccc-cceeEEE
Confidence 4578999999999999887765 37999999999876544 345443 2333443 3333 3555 7899999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+. ..+.+...+|.+++|+|||||+|+++.
T Consensus 132 ~~~---~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 132 QDI---AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec---cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 972 222233556999999999999999983
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=126.93 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=94.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.+..+|||||||+|.++..|+++ .++++|+ +.++..|+.... ..++ +.+.++.++...|++. .||+|++..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFFETIPD-GADVYLIKHV 277 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTTCCCS-SCSEEEEESC
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCCCCCCC-CceEEEhhhh
Confidence 35689999999999999888763 7999999 998888875443 3443 3455555443356766 7999999876
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--cccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|++++++|||||+|++............ ..+..+.. ...... ....+....+.++||.+.+
T Consensus 278 -lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~-~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 278 -LHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAE-RSESEFAALLEKSGLRVER 352 (369)
T ss_dssp -GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCC-BCHHHHHHHHHTTTEEEEE
T ss_pred -hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCcc-CCHHHHHHHHHHCCCeEEE
Confidence 5544544 3799999999999999999754333321111 11211110 011111 1233566778899999877
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-11 Score=126.62 Aligned_cols=111 Identities=12% Similarity=0.230 Sum_probs=81.3
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHH-h---cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYL-F---ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~L-a---~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L 525 (870)
|...+...+. ++...++.+|||||||+|.++..+ + ..+|+|+|+++.|+..|+.. +...|+..+.++.+ ...+
T Consensus 107 ~~~l~~~E~~-la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~-~~~~gl~~v~~v~gDa~~l 184 (298)
T 3fpf_A 107 YLELLKNEAA-LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV-IEGLGVDGVNVITGDETVI 184 (298)
T ss_dssp HHHHHHHHHH-HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH-HHHHTCCSEEEEESCGGGG
T ss_pred HHHHHHHHHH-HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH-HHhcCCCCeEEEECchhhC
Confidence 4444444432 333467899999999999766433 3 34899999999999998854 44445555555554 4555
Q ss_pred CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 526 QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
| +++||+|++.. + ..+...++.++.|+|||||+|++..
T Consensus 185 ~--d~~FDvV~~~a--~--~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 185 D--GLEFDVLMVAA--L--AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp G--GCCCSEEEECT--T--CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred C--CCCcCEEEECC--C--ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 4 78999999863 2 4678899999999999999999974
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=124.61 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCC-hhhHHHH---HHHHHHHcCCCcEEEEc-CcccCCCC-CCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFA-PKDEHDA---QIQFALERGIPAISAVM-GTKRLQFP-RNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiS-p~ml~~A---~vq~A~ergl~~~~~v~-dae~LPfp-d~SFDlV~ 536 (870)
++.+|||||||+|.++..|+.. .|+|+|+| +.|+..| + +.+...+++++.++. +...+|.. .+.||.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5789999999999999999842 79999999 7776654 2 223345666555554 45666532 24566666
Q ss_pred ecccccccc-------cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhcc
Q 002884 537 CARCRVPWH-------IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAG 609 (870)
Q Consensus 537 Ss~~alhw~-------~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daG 609 (870)
++ ++|. .+...+|.+++|+|||||+|++..+.. .................. .|.........+.++|
T Consensus 103 ~~---~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~el~~~l~~aG 176 (225)
T 3p2e_A 103 IL---FPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYS-DSYEEAEIKKRGLPLLSK--AYFLSEQYKAELSNSG 176 (225)
T ss_dssp EE---SCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCC-C--------------CCH--HHHHSHHHHHHHHHHT
T ss_pred Ee---CCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecc-ccchhchhhhcCCCCCCh--hhcchHHHHHHHHHcC
Confidence 54 2332 234678999999999999999953222 221111101111111111 1211112455678889
Q ss_pred ceEEEec
Q 002884 610 FAIYRKP 616 (870)
Q Consensus 610 faI~rkg 616 (870)
|.+....
T Consensus 177 f~v~~~~ 183 (225)
T 3p2e_A 177 FRIDDVK 183 (225)
T ss_dssp CEEEEEE
T ss_pred CCeeeee
Confidence 9987744
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=122.89 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=74.0
Q ss_pred CCCEEEEECCCC---chhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccC-----------CC
Q 002884 467 YTRVSLDVGCGV---ASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRL-----------QF 527 (870)
Q Consensus 467 ~~~~VLDIGCGt---G~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~L-----------Pf 527 (870)
...+|||||||+ |.++..+.. .+|+++|+++.|+..|+.... ..+.+.++. +.... .+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~---~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA---KDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT---TCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC---CCCCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 987766543 489999999999988875432 123344444 33221 13
Q ss_pred CCCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 528 PRNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+..+||+|+++. ++||..+ ...+|++++|+|||||+|+++..
T Consensus 154 d~~~~d~v~~~~-vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVG-MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETT-TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEec-hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 335899999985 5888766 68999999999999999999853
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.2e-11 Score=115.92 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccCC-CCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRLQ-FPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~LP-fpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+.. +...++ +.+.++.+ ...++ +.+++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 35789999999999998888763 899999999999888744 444555 34445544 45554 66789999999
Q ss_pred cccccccc--------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWH--------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+...++.. .+...+|.++.++|||||+|++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 75432211 1235799999999999999999853
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-11 Score=126.05 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
+..+|||||||+|.++..|++. .++++|+ +.++..|+... ...++ +.+.++.++...|+|. .||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~v- 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRF-LDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAV- 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTSCCCC-SCSEEEEESC-
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhh-hhcCcCcCeEEecCCCCCCCCC-CCcEEEEehh-
Confidence 4679999999999999888753 7999999 99888887443 34444 3455555432256665 7999999876
Q ss_pred cccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|++++++|||||+|++.........+........+. ....... ...+....+.++||.+.+
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~-~~~~~~~-t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLT-YFGGKER-SLAELGELAAQAGLAVRA 317 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHH-HHSCCCC-CHHHHHHHHHHTTEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHh-hCCCCCC-CHHHHHHHHHHCCCEEEE
Confidence 5544443 789999999999999999985443322110000000000 0111111 133556778899998876
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=121.01 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHH---HHHcCCCcEEE-EcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQF---ALERGIPAISA-VMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~---A~ergl~~~~~-v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.|+..+.... +...+++.+.+ ..+...+|+++++ |.|+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 35789999999999999888764 7999999999987543211 12345555544 4456789998777 87774
Q ss_pred ccc--cc--ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARC--RV--PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~--al--hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+ .. |+..++..+|.++.|+|||||.|+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 321 11 134566899999999999999999973
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.2e-11 Score=118.69 Aligned_cols=102 Identities=18% Similarity=0.025 Sum_probs=75.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||+||| +|.++..|+.. .|+|+|+++.++..|+. .+...++...+...+. ...++++++||+|+|+..
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 357899999999 99998887753 89999999999988874 4445565444444443 234567789999999743
Q ss_pred ccccccC-------------------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHID-------------------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D-------------------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..+ ...+|.++.++|||||+|++..
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 133 -YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp -CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 222111 2678999999999999999973
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.2e-11 Score=128.37 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc-
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC- 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~- 540 (870)
++.+|||||||+|.++..|+++ +|+|+|+++ |+..|+ +.+...++. ..+...+...+++++++||+|+|...
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 4789999999999999988875 899999995 888877 455556665 34445556888999999999999632
Q ss_pred -ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 -RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 -alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+++..+...+|.++.|+|||||+|++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 1334456789999999999999999854
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=117.91 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcC-cccC-C-CCCCc-eeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI--PAISAVMG-TKRL-Q-FPRNV-FDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~d-ae~L-P-fpd~S-FDlV~S 537 (870)
++.+|||+|||+|.++..++.+ .|+++|+++.|+..|+. .+...++ +.+.++.+ ...+ + +++++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHH-HHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 4679999999999999876543 79999999999998875 4445565 45555554 3333 3 24678 999999
Q ss_pred cccccccccChHHHHHHH--HhhcCCCcEEEEEECC
Q 002884 538 ARCRVPWHIDGGKLLLEL--NRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei--~RVLKPGG~Lv~S~~p 571 (870)
+.. ++ ..+...++..+ .|+|||||+|+++..+
T Consensus 132 ~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 753 33 23457888888 7789999999998533
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-11 Score=122.89 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..|. +++....+...+...+|+++++||+|+++.+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-----KRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-----HHCTTSEEEECCTTSCSBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-----HhCCCcEEEEcchhhCCCCCCceeEEEEeCC--
Confidence 5789999999999999888764 7999999999876654 3333345556666788999999999998642
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E 578 (870)
..++.++.|+|||||.|++.. +....+.+
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~ 186 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT-PGPRHLME 186 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE-ECTTTTHH
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE-cCHHHHHH
Confidence 135899999999999999984 44444443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=112.08 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..++. .+...+++.+.++.+ ... ++++++||+|+++.+
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-- 109 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ-NLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-- 109 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHH-HHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC--
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc--
Confidence 45789999999999999988864 89999999999988874 444455554544444 333 666789999999753
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+...++.++.++ |||.|++..
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEe
Confidence 5678999999999 999999984
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=119.92 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCC---CCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFP---RNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfp---d~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|+. ..|+++|+++.|+..++. .+...+++.+.++. +...++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK-LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467999999999998888873 389999999999988874 44455665454544 45666654 6789999996
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ..+...++.++.++|||||+|++.
T Consensus 149 ~-----~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 149 A-----VARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp C-----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred c-----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 256789999999999999999986
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-11 Score=122.51 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH-----HcCCCcEEEEcC-ccc-CC--CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL-----ERGIPAISAVMG-TKR-LQ--FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~-----ergl~~~~~v~d-ae~-LP--fpd~SFD 533 (870)
+..+|||||||+|.++..|+.. .|+|+|+++.|+..|+..... ..+..++.++.+ +.. +| |++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 4678999999999999998864 799999999999888754332 134555555544 444 67 8889999
Q ss_pred EEEecccccccccC--------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHID--------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|++.+. .+|... ...+|.++.|+|||||.|++.+
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9988642 445321 1479999999999999999973
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-11 Score=122.15 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCC-CCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfp-d~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. .....+...+. ..+|++ +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 5789999999999999999875 899999999988776533 22344455555 678888 8999999986
Q ss_pred ccccChHHHHHHHHhhcCCCcEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.+...+|.++.|+|||||+|+
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEE
Confidence 356788999999999999999
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=115.60 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. +|+++|+++.++..++.. ....+++.+.++. +....+.+.++||+|++..+ +
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~ 153 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR-LKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA-P 153 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB-C
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH-HHHcCCCceEEEECCcccCCccCCCccEEEEccc-h
Confidence 46789999999999999888864 899999999999888743 4445555554444 44555556789999999754 5
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..+ ++.++|||||+|+++..
T Consensus 154 ~~~~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 154 PEIPT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp SSCCT------HHHHTEEEEEEEEEEEC
T ss_pred hhhhH------HHHHhcccCcEEEEEEc
Confidence 55543 68999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.6e-11 Score=114.69 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=87.1
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHH
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQF 507 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~ 507 (870)
++..+.+|.+. .+......+.+.+...+.. ..++.+|||+|||+|.++..++.. .|+++|+++.++..|+...
T Consensus 12 ~~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~---~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 87 (187)
T 2fhp_A 12 GGRRLKALDGD-NTRPTTDKVKESIFNMIGP---YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENI 87 (187)
T ss_dssp TTCBCCCCCCC-SSCCCCHHHHHHHHHHHCS---CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred cCccccCCCCC-CcCcCHHHHHHHHHHHHHh---hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH
Confidence 34445555443 2333344555555555432 135679999999999998877654 7999999999998887544
Q ss_pred HHHcCC-CcEEEEc-Cccc----CCCCCCceeEEEecccccccccChHHHHHHH--HhhcCCCcEEEEEE
Q 002884 508 ALERGI-PAISAVM-GTKR----LQFPRNVFDLVHCARCRVPWHIDGGKLLLEL--NRVLRPGGYFVWSA 569 (870)
Q Consensus 508 A~ergl-~~~~~v~-dae~----LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei--~RVLKPGG~Lv~S~ 569 (870)
...++ +.+.++. +... +++.+++||+|+++.. ++ ......++..+ .|+|+|||+|++..
T Consensus 88 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 88 -AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp -HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -HHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 34454 2344444 4322 2334678999999753 23 24557777777 89999999999984
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-11 Score=126.45 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC-----CCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF-----PRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf-----pd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+++ .|+|+|+|+.|+..|+.+... .. . ..+...++. .+++||+|+|+
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~-~~---v--~~~~~~~~~~~~~~~~~~fD~Vv~~ 117 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD-RC---V--TIDLLDITAEIPKELAGHFDFVLND 117 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS-SC---C--EEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-cc---c--eeeeeecccccccccCCCccEEEEh
Confidence 45789999999999999999875 899999999999877643221 11 1 111122222 25789999998
Q ss_pred ccccccc-cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWH-IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.++.|+. .+...+|.++.++| |||.|+++...
T Consensus 118 ~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 118 RLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 6533333 23478999999999 99999999543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=125.07 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-CcEEE-EcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI-PAISA-VMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~-v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..+++. .|+|+|+++ |+..|+. .+...++ +.+.+ ..+...+++++++||+|+|...
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMD-IIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHH-HHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHH-HHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 35789999999999999888865 799999997 8877764 4445555 34444 4456788888889999998642
Q ss_pred --ccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 541 --RVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 541 --alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
.+++..+...+|.++.|+|||||+|+.
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 133334457899999999999999983
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=127.06 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC---cEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP---AISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~---~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
++.+|||||||+|.++..++.. .|+++|+++.++..++.. +...++. .+.++.++..-++++++||+|+|+.
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n-~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHH-HHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 4589999999999999888764 799999999999888754 4444443 2333443322367788999999985
Q ss_pred cccccc---cCh--HHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH---IDG--GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~---~D~--~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. +|+. .+. ..+|.++.++|||||.|++..
T Consensus 301 p-fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 301 P-FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp C-C-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 4432 111 468999999999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=121.52 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=92.4
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCC-CCCCceeEEEeccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQ-FPRNVFDLVHCARC 540 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LP-fpd~SFDlV~Ss~~ 540 (870)
+.+|||||||+|.++..|+++ .++++|+ +.++..++.. ....++. .+.++.+ ....+ +..+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKT-IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHH-HHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 789999999999999888763 7999999 8888887743 3344443 3444443 44443 24456999999875
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHH--HHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVE--IWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~--~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|++++++|||||+|++........ .+.... .+..+........+. .......+.++||.+.+
T Consensus 258 -lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 258 -LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHP-TPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp -GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCC-HHHHHHHHHHTTCEEEE
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCC-HHHHHHHHHHCCCceee
Confidence 5544443 799999999999999999985433221 111111 111111111111222 33556778899999887
Q ss_pred e
Q 002884 615 K 615 (870)
Q Consensus 615 k 615 (870)
.
T Consensus 336 ~ 336 (352)
T 3mcz_A 336 R 336 (352)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=113.52 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..++.+ .|+++|+++.|+..|+. .+...+++.+.++.+ ... +++.+++||+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~-~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIK-NLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 4679999999999999876543 79999999999998874 444556555555554 333 5667789999999743
Q ss_pred cccccChHHHHHHHHh--hcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNR--VLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~R--VLKPGG~Lv~S~ 569 (870)
++ ......++..+.+ +|+|||+|+++.
T Consensus 132 ~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 132 FR-RGLLEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CC-CCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence 33 2445778888865 599999999984
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=111.99 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=84.0
Q ss_pred CCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH
Q 002884 432 GEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL 509 (870)
Q Consensus 432 Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ 509 (870)
+..+..+.+ +......+.+.+...+... ..++.+|||+|||+|.++..|+.. .|+|+|+++.++..++....
T Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~- 84 (171)
T 1ws6_A 11 GVALKVPAS---ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVR- 84 (171)
T ss_dssp TCEECCCTT---CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-
T ss_pred CeEecCCCC---CCCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH-
Confidence 444444444 3333344455454444321 114679999999999999988865 69999999999988875443
Q ss_pred HcCCCcEEEEcCccc-CCC---CCCceeEEEecccccccccChHHHHHHHH--hhcCCCcEEEEEEC
Q 002884 510 ERGIPAISAVMGTKR-LQF---PRNVFDLVHCARCRVPWHIDGGKLLLELN--RVLRPGGYFVWSAT 570 (870)
Q Consensus 510 ergl~~~~~v~dae~-LPf---pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~--RVLKPGG~Lv~S~~ 570 (870)
..++...+...+... ++. ..++||+|+++.. ++ .....++..+. ++|||||+|+++..
T Consensus 85 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 85 RTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP-YA--MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred HcCCceEEEeccHHHHHHhhhccCCceEEEEECCC-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 344433333334333 221 1347999999753 33 44566777777 99999999999843
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=125.03 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=91.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccC--CCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRL--QFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~L--Pfpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|+++ +++++|+ +.++..|+.. +...++ +.+.++.+ .... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQ-TAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHH-HTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHH-HHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 4689999999999999888763 7999999 8888877643 333444 23444444 4443 566 789999998
Q ss_pred ccccccccC-hHHHHHHHHhhcCCCcEEEEEECCCcCchhHHH-HHH--H----hhcccccccchhHHHHHHHHHhhccc
Q 002884 539 RCRVPWHID-GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDV-EIW--N----AMSNLTVSMCWELVTIKMDKLNSAGF 610 (870)
Q Consensus 539 ~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~-~~w--~----~~~~la~~mcW~~va~~~~~L~daGf 610 (870)
.++.+|..+ ...+|++++|+|||||.|++............. ..+ . .+......... ...+....+.++||
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMF-HSDDLIRCIENAGL 334 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSC-CHHHHHHHHHTTTE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCccc-CHHHHHHHHHHcCC
Confidence 754445432 268899999999999999998654433221111 000 0 01111111111 23356677888998
Q ss_pred eEEE
Q 002884 611 AIYR 614 (870)
Q Consensus 611 aI~r 614 (870)
.+.+
T Consensus 335 ~~v~ 338 (363)
T 3dp7_A 335 EVEE 338 (363)
T ss_dssp EESC
T ss_pred eEEE
Confidence 8765
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=110.10 Aligned_cols=98 Identities=19% Similarity=0.333 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccCCCCC-CceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRLQFPR-NVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~LPfpd-~SFDlV~Ss~~ 540 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..++.. ....++ +.+.+..+ ... +++. +.||+|++...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS 109 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH-HHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence 46789999999999999988875 899999999999887744 334455 34444443 332 3333 58999999743
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ +...+|.++.++|+|||.|++..
T Consensus 110 -~~---~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 110 -GG---ELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp -TT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -hH---HHHHHHHHHHHhcCCCcEEEEEe
Confidence 32 46899999999999999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-11 Score=111.50 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--------CCCCce
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--------FPRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--------fpd~SF 532 (870)
.++.+|||+|||+|.++..|+. ..++++|+++ ++.. ....+...+...++ +++++|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 4578999999999998887764 3899999999 6421 12233444555555 777899
Q ss_pred eEEEecccccccccCh-----------HHHHHHHHhhcCCCcEEEEEE
Q 002884 533 DLVHCARCRVPWHIDG-----------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~-----------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+|+++. .+++.... ..+|.++.++|||||.|+++.
T Consensus 90 D~i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 90 QVVMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp EEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECC-CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999974 36655444 688999999999999999974
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=131.00 Aligned_cols=103 Identities=13% Similarity=0.017 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc---C-CEEEEeCChhhHHHHHHHH------HHHcCC--CcEEEEc-CcccCCCCC--C
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---R-DVLTMSFAPKDEHDAQIQF------ALERGI--PAISAVM-GTKRLQFPR--N 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r-~VtgVDiSp~ml~~A~vq~------A~ergl--~~~~~v~-dae~LPfpd--~ 530 (870)
.++.+|||||||+|.++..++. . .|+|||+++.++..|.... +...|+ ..+.++. +...+|+.+ .
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~ 251 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 251 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence 4688999999999998887764 2 4999999999888776532 233354 3444544 456777754 4
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.||+|+++.. + |..+....|.+++|+|||||.|+++..
T Consensus 252 ~aDVVf~Nn~-~-F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 252 NTSVIFVNNF-A-FGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp TCSEEEECCT-T-CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CccEEEEccc-c-cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 7999999753 3 446778899999999999999998743
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-11 Score=127.57 Aligned_cols=147 Identities=10% Similarity=0.121 Sum_probs=83.9
Q ss_pred ccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 444 FIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 444 F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
.+++...+...|... .....+.+|||||||+|.++..|++. .|+|+|+++.|+..|.. +.........
T Consensus 18 vsrg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~-----~~~~~~~~~~ 88 (232)
T 3opn_A 18 VSRGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIR-----SDERVVVMEQ 88 (232)
T ss_dssp SSTTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHH-----TCTTEEEECS
T ss_pred cCCcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHH-----hCcccccccc
Confidence 345555444444332 22335679999999999999988864 79999999999876542 2111111100
Q ss_pred -C-----cccCC---CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--c
Q 002884 521 -G-----TKRLQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--L 589 (870)
Q Consensus 521 -d-----ae~LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--l 589 (870)
. ...++ +...+||+|+++ ...+|.+++|+|||||+|++...+.+. ..|..+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~d~~~~D~v~~~---------l~~~l~~i~rvLkpgG~lv~~~~p~~e------~~~~~~~~~G~ 153 (232)
T 3opn_A 89 FNFRNAVLADFEQGRPSFTSIDVSFIS---------LDLILPPLYEILEKNGEVAALIKPQFE------AGREQVGKNGI 153 (232)
T ss_dssp CCGGGCCGGGCCSCCCSEEEECCSSSC---------GGGTHHHHHHHSCTTCEEEEEECHHHH------SCHHHHC-CCC
T ss_pred ceEEEeCHhHcCcCCCCEEEEEEEhhh---------HHHHHHHHHHhccCCCEEEEEECcccc------cCHHHhCcCCe
Confidence 0 11222 233445555443 267999999999999999996422111 11222111 0
Q ss_pred --ccccchhHHHHHHHHHhhccceEEE
Q 002884 590 --TVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 590 --a~~mcW~~va~~~~~L~daGfaI~r 614 (870)
...............+..+||.+..
T Consensus 154 ~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 154 IRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred ecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 0001111233456678888999877
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=120.08 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++..+++. .|+|+|+++.++..++. .+...++...+...+... ++++++||+|+++.. .+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~-~~- 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-AE- 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-HH-
T ss_pred CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhh-cCcCCCCCEEEECCc-HH-
Confidence 5789999999999998888765 79999999999988874 444556553333333322 245678999999742 22
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....++.++.++|||||+|+++.
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEe
Confidence 25789999999999999999984
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=117.72 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccCC--CCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~LP--fpd~SFDlV~Ss~ 539 (870)
++.+|||||||+|.++..|+.+ .|+|+|+++.++..|+.. +...++. .+.++. +...++ +++++||+|+|+.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n-~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRS-VAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHH-HHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHH-HHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 5789999999999999998875 799999999999888754 4445554 344444 444443 5678999999974
Q ss_pred ccccc----c---------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPW----H---------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw----~---------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..+.. . .+...++..+.++|||||+|++.
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 32111 0 11357899999999999999996
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=122.05 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=91.2
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-c
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAV-M 520 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~ 520 (870)
++++..+...|... ....++.+|||||||||.|+..|+.. .|+|+|+++.|++.+.. ......... .
T Consensus 67 srg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r-----~~~rv~~~~~~ 137 (291)
T 3hp7_A 67 SRGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR-----QDDRVRSMEQY 137 (291)
T ss_dssp STTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH-----TCTTEEEECSC
T ss_pred cchHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH-----hCcccceeccc
Confidence 44555444444333 22335779999999999999888764 79999999999876431 111111111 1
Q ss_pred CcccCC---CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhH
Q 002884 521 GTKRLQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWEL 597 (870)
Q Consensus 521 dae~LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~ 597 (870)
+...++ ++..+||+|+|..+ ++ ....+|.+++|+|||||.|++...|-+....+.......+.+ . ......
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~s-f~---sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd-~-~~~~~~ 211 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVS-FI---SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRE-S-SIHEKV 211 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCS-SS---CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCC-H-HHHHHH
T ss_pred CceecchhhCCCCCCCEEEEEee-Hh---hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCC-H-HHHHHH
Confidence 222222 34456999999743 43 357899999999999999999755443322221100000000 0 011112
Q ss_pred HHHHHHHHhhccceEEE
Q 002884 598 VTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 598 va~~~~~L~daGfaI~r 614 (870)
.......+.++||.+..
T Consensus 212 ~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 212 LETVTAFAVDYGFSVKG 228 (291)
T ss_dssp HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 22345567788998766
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=118.18 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.. +...+++. +.++.++...++++++||+|+++.
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~ 170 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN-IKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL 170 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH-HHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence 46789999999999998887653 799999999999888744 44456554 555555433457888999999852
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.++..+|.++.++|||||+|++..
T Consensus 171 ------~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 171 ------PQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 356789999999999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-10 Score=119.27 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=93.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
.+..+|||||||+|.++..|++. +++++|++ .++..|+.... ..++. .+.++. +....+++.+ ||+|++..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 35689999999999999888753 79999999 88888875443 33443 344444 4455677665 99999986
Q ss_pred cccccccC--hHHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHHH--HHhhcccccccchhHHHHHHHHHhhccceEE
Q 002884 540 CRVPWHID--GGKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVEI--WNAMSNLTVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 540 ~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~~--w~~~~~la~~mcW~~va~~~~~L~daGfaI~ 613 (870)
+ +|+..+ ...+|.++.++|+|||+|++........ .+..... +..+........+. .......+.++||.+.
T Consensus 241 ~-l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 241 F-LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYT-FAEYESMFSNAGFSHS 318 (335)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCC-HHHHHHHHHHTTCSEE
T ss_pred h-hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCC-HHHHHHHHHHCCCCee
Confidence 5 444433 3799999999999999999885443321 1111111 11110000112222 3356677888999877
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
+
T Consensus 319 ~ 319 (335)
T 2r3s_A 319 Q 319 (335)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-10 Score=120.60 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=89.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|++. .++++|+ +.++..++... ...++. .+.++.++..-+++.+ ||+|+++.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~-~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF-ADAGLADRVTVAEGDFFKPLPVT-ADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTSCCSCC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCCcCCCC-CCEEEEecc
Confidence 35789999999999999888753 7999999 99998887543 344543 4444444321245444 999999875
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEEC--CCcCchhHHHHHHHhhcc--cccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSAT--PVYQKLGEDVEIWNAMSN--LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~--p~~~tL~El~~~w~~~~~--la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|.++.++|||||+|++... ............+..+.. ......+ ........+.++||.+.+
T Consensus 258 -l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 258 -LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVR-TRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp -GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCC-CHHHHHHHHHTTTEEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCC-CHHHHHHHHHHCCCceEE
Confidence 5444444 4899999999999999998755 322211111111111100 0111112 233556778889998776
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-10 Score=124.18 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..++++ +|+|+|++ .|+..|+ +.+...++. ..+...+...++++ ++||+|+|...
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence 45789999999999999988875 89999999 8998886 455556654 34444456778877 88999999642
Q ss_pred ccccc---cChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWH---IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~---~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.++. .....++.++.|+|||||+|+++
T Consensus 139 -~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 -GYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp -BTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred -hhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 2332 34678999999999999999865
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-11 Score=125.05 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++ +.+.++. +...++ ++++||+|+++.. +
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~-~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN-NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP-W 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC-C
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC-c
Confidence 5789999999999999999875 89999999999998874 4455565 3444444 445555 5679999999854 5
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++..+....+.++.++|+|||++++.
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHH
Confidence 65555566888999999999997764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=120.05 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=88.9
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccCCCCCCceeEEEeccccc
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~LPfpd~SFDlV~Ss~~al 542 (870)
.+|||||||+|.++..|+++ +++++|+ +.++..++...... ++ +.+.++.+ ... +++ +.||+|++..++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-LAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-HHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-CCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 89999999999999888753 7999999 99988887544332 22 23444444 333 565 6799999987633
Q ss_pred ccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--cccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+| .+. ..+|++++++|||||+|++...............+..+.. ......+ ...+....+.++||.+.+
T Consensus 245 ~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 245 DL-DEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHR-TTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp GC-CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCC-BHHHHHHHHHHTTEEEEE
T ss_pred CC-CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCC-CHHHHHHHHHHCCCceeE
Confidence 45 344 4999999999999999999854332211111111111100 0011111 233556778899998766
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-10 Score=120.82 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=91.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc-CcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
.+..+|||||||+|.++..|+++ +++++|+ +.++..++... ...+++. +.++. +....|+++. |+|++..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENA-AEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH-HHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHH-HhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 45789999999999999888763 7999999 99998887544 3445432 44444 4556677654 9999987
Q ss_pred cccccccC--hHHHHHHHHhhcCCCcEEEEEECCCcCc-hhHHHHHHHhhcccccccc---hhHHHHHHHHHhhccceEE
Q 002884 540 CRVPWHID--GGKLLLELNRVLRPGGYFVWSATPVYQK-LGEDVEIWNAMSNLTVSMC---WELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 540 ~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t-L~El~~~w~~~~~la~~mc---W~~va~~~~~L~daGfaI~ 613 (870)
+ +|...+ ...+|+++.++|||||+|++........ .+.....+..+........ +.........+.++||.+.
T Consensus 265 v-lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 265 I-LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp C-GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred h-hccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 5 544344 5889999999999999998875333221 1111111211110111111 0122345667888899876
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
+
T Consensus 344 ~ 344 (359)
T 1x19_A 344 T 344 (359)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-10 Score=114.56 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCCCC-----CCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQFP-----RNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LPfp-----d~SFD 533 (870)
++.+|||||||+|.++..|+.. +|+++|+++.++..|+... ...++. .+.++.+ . ..++.. .++||
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH-HHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4679999999999999988762 7999999999998887544 444543 3444444 3 234432 27899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|++... .++..+...++..+ ++|||||+|++..
T Consensus 137 ~V~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 137 MVFLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEEECSC-GGGHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEEcCC-cccchHHHHHHHhc-cccCCCeEEEEeC
Confidence 9998742 44333445667777 9999999999974
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.1e-10 Score=131.94 Aligned_cols=102 Identities=13% Similarity=0.222 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHH-----cCCCcEEEEc-CcccCCCCCCceeEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALE-----RGIPAISAVM-GTKRLQFPRNVFDLV 535 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~e-----rgl~~~~~v~-dae~LPfpd~SFDlV 535 (870)
++.+|||||||+|.++..|++. +|+|+|+++.|+..|+.+.... .+++.+.++. +...+|+++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 5789999999999999999864 6999999999999887544432 2445454444 568899999999999
Q ss_pred EecccccccccCh--HHHHHHHHhhcCCCcEEEEEEC
Q 002884 536 HCARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 536 ~Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|..+ ++|..++ ..++.++.|+|||| +|+++++
T Consensus 801 V~~eV-LeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 801 TCLEV-IEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEESC-GGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEeCc-hhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 99864 6666654 36899999999999 7777743
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=110.55 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+.. .....+...+... ++++++||+|+|+.. +++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~ 91 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPP-YVPD 91 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTT
T ss_pred CCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCC-CccC
Confidence 4679999999999999999877 89999999997654 1122334444444 677789999999854 5543
Q ss_pred cC---------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 546 ID---------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 546 ~D---------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+ ...++.++.+.| |||.|++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 33 367899999999 999999973
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-10 Score=119.68 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEE-EEcCccc
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AIS-AVMGTKR 524 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~-~v~dae~ 524 (870)
.|...|.+.+.. .++.+|||||||+|.++..+++. +|+|+|+++ |+..|+. .+...++. .+. ...+...
T Consensus 25 ~y~~ai~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~~-~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 25 SYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKE-LVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHH-HHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhhHhh----cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHHH-HHHHcCCCCCEEEEECchhh
Confidence 455555444332 24679999999999999888864 799999994 8877763 44455553 333 4445677
Q ss_pred CCCCCCceeEEEeccc--ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 525 LQFPRNVFDLVHCARC--RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 525 LPfpd~SFDlV~Ss~~--alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++++++||+|+|... .+++......+|.++.|+|||||+|+..
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 8888889999999632 1223345678999999999999999843
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=116.32 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-fpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...++. .+.++.+ . ..+| ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ-NLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4679999999999999998872 89999999999988874 44455653 4445444 3 3344 447899999985
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. +......+|.++.++|||||+|++...
T Consensus 150 ~----~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 A----AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp T----TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred C----cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 3 345568899999999999999999643
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=115.33 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+. ..|+++|+++.++..++. .+...+++.+.++.++..-++++++||+|+|+...+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 467999999999999988874 389999999999988874 444456655555554422244567899999974211
Q ss_pred c------------cc------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 P------------WH------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 h------------w~------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. +. .....++.++.++|||||+|++.
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 11 12367889999999999999997
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-10 Score=111.73 Aligned_cols=96 Identities=16% Similarity=0.033 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+. ..|+++|+++.++..++. .+...++..+.++. +...++ +.++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ-VQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec--
Confidence 367999999999999888874 389999999999988874 44455665444444 445554 467899999863
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .+...++.++.++|+|||+|++..
T Consensus 141 ~---~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 F---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp S---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred c---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 456899999999999999999973
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-10 Score=116.66 Aligned_cols=97 Identities=19% Similarity=0.040 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCC---CCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFP---RNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfp---d~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..++. .+...++.++.++. +.+.++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3578999999999998877764 389999999999988874 45556665555544 44666543 478999999
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. + .+...++..+.++|||||+|++.
T Consensus 158 ~a--~---~~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 158 RA--V---APLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp ES--S---CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CC--c---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 63 2 35688999999999999999986
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=120.84 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCch----hHHHHhc--------CCEEEEeCChhhHHHHHHHHH---HHcCC------------------
Q 002884 467 YTRVSLDVGCGVAS----FGGYLFE--------RDVLTMSFAPKDEHDAQIQFA---LERGI------------------ 513 (870)
Q Consensus 467 ~~~~VLDIGCGtG~----~a~~La~--------r~VtgVDiSp~ml~~A~vq~A---~ergl------------------ 513 (870)
+..+|||+|||+|. ++..|++ ..|+|+|+|+.|+..|+.... ..+++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999997 5554543 279999999999988874310 00000
Q ss_pred ----------CcEEEEcCcccCCCC-CCceeEEEecccccccccCh--HHHHHHHHhhcCCCcEEEEE
Q 002884 514 ----------PAISAVMGTKRLQFP-RNVFDLVHCARCRVPWHIDG--GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 514 ----------~~~~~v~dae~LPfp-d~SFDlV~Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+.+...+....|++ .+.||+|+|..+ ++|..+. ..++.+++++|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv-liyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc-hHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 122333444555665 578999999865 5554444 79999999999999999985
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.6e-10 Score=110.07 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..++... ...+++.+.++.+....+++ .++||+|++..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-RKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence 4578999999999998887765 47999999999998887443 34455555555443333444 67899999985
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+ +++.. .++.++|||||.|++...
T Consensus 155 ~-~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 155 A-GPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp B-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred c-hHHHH------HHHHHHcCCCcEEEEEEC
Confidence 4 55433 488999999999999853
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=112.86 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-ccc-CCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKR-LQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~-LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++. .+.++.+ ... ++..++.||+|+++..
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 5679999999999999888764 79999999999988874 44445553 3444444 333 4444567999999742
Q ss_pred ccccccChHHHHHHHH--hhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELN--RVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~--RVLKPGG~Lv~S~ 569 (870)
++ ......++..+. ++|+|||+|++..
T Consensus 110 -~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 110 -YA-KETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp -SH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -CC-cchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 22 133466777776 9999999999984
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=118.93 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
..++.+|||+|||+|.++..|+. ..|+++|+++.++..++.. +... |.+.+.++.++..-++++++||+|++.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN-LSEFYDIGNVRTSRSDIADFISDQMYDAVIAD 186 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHH-HHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHhcCCCCcEEEEECchhccCcCCCccEEEEc
Confidence 34678999999999998888764 3799999999998887743 3344 555555555543336777899999984
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+++..+|.++.++|||||+|+++.+
T Consensus 187 ------~~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 187 ------IPDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp ------CSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ------CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 24567899999999999999999853
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=123.92 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||||||+|.++..|+.. .|+++|+++.++..++... ...++...+...+.. .+.+++||+|+|+.. +
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~--~~~~~~fD~Iv~~~~-~ 271 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVF--SEVKGRFDMIISNPP-F 271 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTT--TTCCSCEEEEEECCC-C
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEcccc--ccccCCeeEEEECCC-c
Confidence 3568999999999999888753 7999999999998887543 445555444444433 344778999999864 5
Q ss_pred ccc-----cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWH-----IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~-----~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+. .+...+|.++.|+|||||.|++...
T Consensus 272 ~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 272 HDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 541 2347899999999999999999843
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-10 Score=114.97 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCccc----CCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKR----LQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~----LPfpd~SFDlV~ 536 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..+... +... +++.++ .+... ++++ ++||+|+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~-~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA-CAER--ENIIPILGDANKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH-TTTC--TTEEEEECCTTCGGGGTTTS-CCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHH-hhcC--CCeEEEECCCCCcccccccC-ccEEEEE
Confidence 35789999999999998888753 799999999988777632 3222 344444 44555 6776 7899999
Q ss_pred ecccccccccCh---HHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG---GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+. + .++ ..+|.++.|+|||||+|+++
T Consensus 149 ~~---~---~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 ED---V---AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EC---C---CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Ee---c---CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 43 1 233 77899999999999999996
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-10 Score=115.17 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cccc---CCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKR---LQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~---LPfpd~SFDlV~ 536 (870)
.++.+|||||||+|.++..|++ ..|+|+|+++.++..+. +.+..+ +.+.++. +... +|+.+++||+|+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence 4578999999999999988865 37999999998876654 445544 3344444 4433 566678999999
Q ss_pred ecccccccccCh-HHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+... ..+. ..++.++.++|||||+|+++.
T Consensus 153 ~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 153 ADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp ECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9642 2223 556888999999999999973
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-10 Score=117.64 Aligned_cols=96 Identities=9% Similarity=0.066 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc-CcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..++.. .|+|+|+++.++..|+. .+...++.. +.++. +...++. +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p- 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence 4789999999999999988763 49999999999998874 455556653 44444 4555555 788999998631
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....++.++.++|||||+|++..
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~ 225 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEE
Confidence 234688999999999999999874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=123.34 Aligned_cols=141 Identities=15% Similarity=0.030 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.+..+|||||||+|.++..|+++ .++++|+++ ++. . +.+...+. +.+.++.++...++| +||+|++..+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~-~~~~~~~~~~~v~~~~~d~~~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--R-HRLDAPDVAGRWKVVEGDFLREVP--HADVHVLKRI 256 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--T-CCCCCGGGTTSEEEEECCTTTCCC--CCSEEEEESC
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--c-ccccccCCCCCeEEEecCCCCCCC--CCcEEEEehh
Confidence 35789999999999999888763 688899843 322 1 11111122 234444443224555 7999999865
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc--cccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN--LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~--la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|++++|+|||||+|++...............+..+.. ......+. ..+....+.++||.+.+
T Consensus 257 -lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t-~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 257 -LHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERT-AAELEPLFTAAGLRLDR 332 (348)
T ss_dssp -GGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCB-HHHHHHHHHHTTEEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCC-HHHHHHHHHHCCCceEE
Confidence 5544555 6999999999999999999864333221111111111000 01111111 33566778899998876
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.2e-10 Score=112.88 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..++.......+.+.+.+ ..+...+++++++||+|++..
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 174 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL 174 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence 46789999999999988877643 799999999999888755444314444444 445566678888999999842
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.++..+|.++.++|||||+|++..
T Consensus 175 ------~~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 175 ------MEPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 356689999999999999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-10 Score=120.49 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=90.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+.. .++++|+ +.++..++... ...++. .+.++.++..-+++.+ ||+|++..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~-~D~v~~~~v 258 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFEPLPRK-ADAIILSFV 258 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTSCCSSC-EEEEEEESC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCCCCCCC-ccEEEEccc
Confidence 35689999999999999888753 6889999 88888877443 344543 3444444322245544 999999865
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEECC-CcCch----hHHHHHHHhhcccccccchhHHHHHHHHHhhccceEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSATP-VYQKL----GEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p-~~~tL----~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~ 613 (870)
+|+..+. ..+|.++.++|||||+|++.... ..... ......+... ......+ ........+.++||.+.
T Consensus 259 -l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 259 -LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV--FLGGALR-TREKWDGLAASAGLVVE 334 (360)
T ss_dssp -GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHH--HHSCCCC-BHHHHHHHHHHTTEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhh--hcCCcCC-CHHHHHHHHHHCCCeEE
Confidence 5444444 58999999999999999998544 22211 1111111100 0111112 23356677888999877
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
+
T Consensus 335 ~ 335 (360)
T 1tw3_A 335 E 335 (360)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=117.42 Aligned_cols=99 Identities=10% Similarity=0.133 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
+..+|||||||+|.++..++.. .|+++|+++.|+..++. .+...|+...+.+.+.... .+.++||+|++.. ++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~-~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k-~L 125 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS-IIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLK-ML 125 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH-HHHHSCCSSEEEEECCHHH-HTTSEEEEEEEET-CH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCccEEEeccccc-CCCCCcChhhHhh-HH
Confidence 4789999999999999999543 89999999999999884 4556677633333444322 4568899999975 58
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|...+...++..+++.|||||+||-.
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence 87766677888999999999999865
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-11 Score=116.86 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCC-----CceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPR-----NVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd-----~SFDlV 535 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..++... ...+. .+.++. +... ++++ ++||+|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~-~~~~~~~d~~~-~~~~~~~~~~~fD~i 105 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNA-ERFGA-VVDWAAADGIE-WLIERAERGRPWHAI 105 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHHHHHTTCCBSEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHhCC-ceEEEEcchHh-hhhhhhhccCcccEE
Confidence 46789999999999999888764 8999999999988776433 23333 222333 3333 5555 899999
Q ss_pred EecccccccccCh--------------------------HHHHHHHHhhcCCCcE-EEEE
Q 002884 536 HCARCRVPWHIDG--------------------------GKLLLELNRVLRPGGY-FVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~--------------------------~~vL~Ei~RVLKPGG~-Lv~S 568 (870)
+|+.. ++..... ..++.++.++|||||+ +++.
T Consensus 106 ~~npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 106 VSNPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp EECCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred EECCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99743 2111110 6788899999999999 5554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.6e-10 Score=111.64 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..+.... ...+ ...+...+.......+++||+|++..+ ++
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~-~~ 145 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYEEEKPYDRVVVWAT-AP 145 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCGGGCCEEEEEESSB-BS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcccccccCCCccEEEECCc-HH
Confidence 45789999999999999988874 8999999999888776433 2223 233334444442224678999999854 55
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.. .++.++|||||+|++...
T Consensus 146 ~~~------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 146 TLL------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SCC------HHHHHTEEEEEEEEEEEC
T ss_pred HHH------HHHHHHcCCCcEEEEEEc
Confidence 433 478999999999999843
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-10 Score=110.04 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=65.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCC------------
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQ------------ 526 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LP------------ 526 (870)
.++.+|||||||+|.++..|+. ..|+|+|+++.. ..+ ..+...+...++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------------CCCCceEEEccccchhhhhhcccccccc
Confidence 3567999999999999988864 369999999941 112 233344455555
Q ss_pred -------------CCCCceeEEEecccccccc----cCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 527 -------------FPRNVFDLVHCARCRVPWH----IDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 -------------fpd~SFDlV~Ss~~alhw~----~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++++||+|+|+. .++|. .+. ..+|.++.++|||||.|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDA-AVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCC-CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5678999999974 35553 122 137899999999999999873
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=114.03 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-Ccc-cCCCC--CCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTK-RLQFP--RNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae-~LPfp--d~SFDlV~ 536 (870)
++.+|||||||+|..+..|+.. .|+++|+++.++..|+. .+...++. .+.++. +.. .++.. .++||+|+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE-NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4689999999999999888764 79999999999988874 44445554 444444 432 24433 34899999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+.. +..+...+|.++.++|||||+|++....
T Consensus 142 ~d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDA----DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECS----CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECC----chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 853 2345678999999999999999998543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=114.08 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC--CCcEEEEc-CcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG--IPAISAVM-GTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg--l~~~~~v~-dae~LPfpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..|........+ .+.+.++. +...+++++++||+|++
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~ 177 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence 4678999999999999888865 2799999999999888755544313 34444444 45667788889999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.. .++..+|.++.++|+|||+|++..+
T Consensus 178 ~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 178 DM------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp ES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 52 3556899999999999999999843
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=119.68 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-CcEEE-EcCcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI-PAISA-VMGTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~-v~dae~L 525 (870)
|.+.|.+.+.. .++.+|||||||+|.++..++++ .|+|+|+++ |+..|+ +.+...++ +.+.+ ..+...+
T Consensus 38 y~~~i~~~l~~----~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 38 YQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHTGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHhcccc----CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchhhC
Confidence 44444444332 35789999999999999888764 799999996 776665 34445555 33444 4445667
Q ss_pred CCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEE
Q 002884 526 QFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++ ++||+|+|.....|+. ......+.++.|+|||||+|+++
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 766 5799999975544444 33468888999999999999965
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-10 Score=112.57 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=72.9
Q ss_pred CCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCC-ceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN-VFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~-SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..|+.. ....++..+.++.++...++++. .||+|++...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 167 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN-LERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG- 167 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB-
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHHcCCCCcEEEECCcccCCCCCCCccEEEECCc-
Confidence 4577999999999999988876 4899999999998887743 34456555555554435566654 4999999753
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++.. .++.++|||||+|+++..
T Consensus 168 ~~~~~------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 168 APKIP------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHH------HHHHHhcCCCcEEEEEEe
Confidence 44432 378999999999999853
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7e-10 Score=118.76 Aligned_cols=101 Identities=21% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCc--hhHHHHh-----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC----CC--CCce
Q 002884 467 YTRVSLDVGCGVA--SFGGYLF-----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ----FP--RNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG--~~a~~La-----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP----fp--d~SF 532 (870)
..+.|||||||++ .....++ ..+|+++|.||.|+..|+..... .+...+.++. +...++ .+ .+.|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~-~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS-TPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC-CSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc-CCCCcEEEEEecccChhhhhccccccccc
Confidence 4679999999973 2233222 34899999999999888744321 1222344444 444331 11 3456
Q ss_pred e-----EEEecccccccccC---hHHHHHHHHhhcCCCcEEEEEE
Q 002884 533 D-----LVHCARCRVPWHID---GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 533 D-----lV~Ss~~alhw~~D---~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
| +|+++ .++||..+ +..+|.++.++|+|||+|+++.
T Consensus 157 D~~~p~av~~~-avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 157 DLTRPVALTVI-AIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CTTSCCEEEEE-SCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred CcCCcchHHhh-hhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 6 46665 56999977 4689999999999999999984
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=112.19 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCc--ccCC-CCCCceeEEEe
Q 002884 468 TRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGT--KRLQ-FPRNVFDLVHC 537 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~da--e~LP-fpd~SFDlV~S 537 (870)
..+|||||||+|..+..|+. ..|+++|+++.++..|+. .....++. .+.++.+. ..++ +++++||+|++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 45999999999998888875 279999999999988874 44455654 45555542 3333 44689999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. +..+...++.++.|+|||||+|++..
T Consensus 136 d~----~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QV----SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CC----CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cC----cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 63 23456789999999999999999863
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=117.08 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--C---EEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--D---VLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~---VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. . |+++|+++.++..|+. .+...+++.+.++. +....+.++++||+|++..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence 46789999999999999888764 4 9999999999988874 44455665544444 4455444567899999985
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. +++.. .++.++|||||+|+++.
T Consensus 153 ~-~~~~~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 153 G-VDEVP------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp B-BSCCC------HHHHHHEEEEEEEEEEB
T ss_pred C-HHHHH------HHHHHhcCCCcEEEEEE
Confidence 4 55433 57899999999999984
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=113.09 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-------CCCcEEEEc-Cccc-CC--CCCCc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-------GIPAISAVM-GTKR-LQ--FPRNV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-------gl~~~~~v~-dae~-LP--fpd~S 531 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.++..+.......+ +++++.++. +... ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4679999999999999888763 69999999999988875443321 555555544 4443 66 77899
Q ss_pred eeEEEecccccccccC--------hHHHHHHHHhhcCCCcEEEEE
Q 002884 532 FDLVHCARCRVPWHID--------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
||.|+.... -.|... ...+|.++.++|+|||+|++.
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 999986531 222111 048999999999999999997
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=109.50 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-Cc-ccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GT-KRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-da-e~LPfpd~SFDlV~Ss 538 (870)
+..+|||||||+|..+..|+.. .|+++|+++.++..|+..+. ..++. .+.++. +. ..++..++ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 4679999999999999888754 79999999999988875443 34443 344444 33 33455556 9999986
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. ...+...++.++.++|||||+|++...
T Consensus 134 ~----~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 134 C----DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T----TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C----ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 2 235668999999999999999998743
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=123.76 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHH--HH----HHHHHcC--CCcEEEEcC-cccC--CC--C
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDA--QI----QFALERG--IPAISAVMG-TKRL--QF--P 528 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A--~v----q~A~erg--l~~~~~v~d-ae~L--Pf--p 528 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..| +. +.+...| ...+.++.+ .... ++ .
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 46789999999999999888763 699999999988877 22 2333446 345555543 3222 22 2
Q ss_pred CCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 529 RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.++||+|+++.. + +..+...+|.++.|+|||||.|++..+
T Consensus 321 ~~~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 321 IPQCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp GGGCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cCCCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 478999998753 3 446678899999999999999999743
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=111.91 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCCC-C----CCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQF-P----RNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LPf-p----d~SFD 533 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ....++. .+.++.+ . ..++. . .++||
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4679999999999999988763 799999999999888744 4445554 2444443 3 22321 1 17899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+|++.. +..+...++.++.++|||||+|++....
T Consensus 143 ~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 143 LIYIDA----DKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999753 3455688999999999999999998543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=118.58 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=86.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~ 540 (870)
....+|||||||+|.++..|+++ +++++|+ +.++..+. . .+.+.++.+ ... |+|.+ |+|++..+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~~v~~~~~d~~~-~~p~~--D~v~~~~v 270 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----A--FSGVEHLGGDMFD-GVPKG--DAIFIKWI 270 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C--CTTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----h--cCCCEEEecCCCC-CCCCC--CEEEEech
Confidence 34689999999999999888763 7899999 77654432 1 234455554 343 77754 99999876
Q ss_pred ccccccC-hHHHHHHHHhhcCCCcEEEEEECCCcCch----hHHHHHHHhhccc---ccccchhHHHHHHHHHhhccceE
Q 002884 541 RVPWHID-GGKLLLELNRVLRPGGYFVWSATPVYQKL----GEDVEIWNAMSNL---TVSMCWELVTIKMDKLNSAGFAI 612 (870)
Q Consensus 541 alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL----~El~~~w~~~~~l---a~~mcW~~va~~~~~L~daGfaI 612 (870)
+.+|..+ ...+|++++|+|||||+|++......... ......+..+..+ ..... +...+....+.++||.+
T Consensus 271 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~-rt~~e~~~ll~~AGF~~ 349 (368)
T 3reo_A 271 CHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE-RTEKEFQALAMASGFRG 349 (368)
T ss_dssp GGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCC-CCHHHHHHHHHHTTCCE
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCcc-CCHHHHHHHHHHCCCee
Confidence 3345432 25889999999999999999864433221 1111111111111 01111 12335667789999988
Q ss_pred EE
Q 002884 613 YR 614 (870)
Q Consensus 613 ~r 614 (870)
.+
T Consensus 350 v~ 351 (368)
T 3reo_A 350 FK 351 (368)
T ss_dssp EE
T ss_pred eE
Confidence 76
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=113.86 Aligned_cols=103 Identities=13% Similarity=0.039 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH---cCCC-cEEE-EcCcccC-------CCCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE---RGIP-AISA-VMGTKRL-------QFPR 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e---rgl~-~~~~-v~dae~L-------Pfpd 529 (870)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..|+... .. .++. .+.+ ..+...+ ++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~-~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSL-ELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHT-TSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 35679999999999999888754 7999999999988877433 33 3443 2333 4444444 3677
Q ss_pred CceeEEEecccccc----------------cc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVP----------------WH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alh----------------w~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|+|+.-.+. .. .....+|..+.++|||||+|++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 89999999732111 11 125788999999999999999873
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-10 Score=115.17 Aligned_cols=101 Identities=16% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHc--CCC------------------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALER--GIP------------------------ 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~er--gl~------------------------ 514 (870)
...+|||+|||+|.++..|+.. +|+|+|+++.++..|+....... ++.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999988877642 79999999999988774332210 111
Q ss_pred ---cE-------------EEEcCcccCCC------CCCceeEEEecccccccc--------cChHHHHHHHHhhcCCCcE
Q 002884 515 ---AI-------------SAVMGTKRLQF------PRNVFDLVHCARCRVPWH--------IDGGKLLLELNRVLRPGGY 564 (870)
Q Consensus 515 ---~~-------------~~v~dae~LPf------pd~SFDlV~Ss~~alhw~--------~D~~~vL~Ei~RVLKPGG~ 564 (870)
.. +...+... ++ ....||+|+|+...++.. .....+|.++.++|||||+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFD-PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTC-GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhccccccccccceeeccccc-ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 11 34444333 22 345899999975322221 1125899999999999999
Q ss_pred EEEE
Q 002884 565 FVWS 568 (870)
Q Consensus 565 Lv~S 568 (870)
|+++
T Consensus 210 l~~~ 213 (250)
T 1o9g_A 210 IAVT 213 (250)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=110.31 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-c-ccCC-CC---CCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-T-KRLQ-FP---RNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-a-e~LP-fp---d~SFDl 534 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+.. ....++.. +.++.+ . ..++ ++ .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN-IERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4689999999999999988764 799999999999888744 44455543 444443 3 2222 11 267999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|++... ......+|.++.++|||||+|++....
T Consensus 137 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998632 345578999999999999999987443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=107.41 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..|+... ...++ +...++.+ .....++++.||+|+++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL-KKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-- 166 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHH-HHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHH-HHcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence 4578999999999999888876 48999999999998887443 34454 34444444 333333667899999852
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.++..+|.++.++|||||.|++..
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 356688999999999999999984
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=112.96 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeC-ChhhHHHHHHHHH----HHcCCC----
Q 002884 447 GALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSF-APKDEHDAQIQFA----LERGIP---- 514 (870)
Q Consensus 447 gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDi-Sp~ml~~A~vq~A----~ergl~---- 514 (870)
+.....+++..... ..++.+|||||||+|.++..|+.. .|+++|+ ++.++..++.... ...++.
T Consensus 63 ~~~~l~~~l~~~~~----~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 63 GARALADTLCWQPE----LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHHCGG----GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHhcch----hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 34444455544332 134679999999999998888764 7999999 8999988875442 223332
Q ss_pred -cEEEE-cCc----ccCC--CCCCceeEEEecccccccccChHHHHHHHHhhcC---C--CcEEEEE
Q 002884 515 -AISAV-MGT----KRLQ--FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLR---P--GGYFVWS 568 (870)
Q Consensus 515 -~~~~v-~da----e~LP--fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLK---P--GG~Lv~S 568 (870)
.+.+. .+. ..+. ++++.||+|+++.+ +++..+...++..+.++|+ | ||.+++.
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 22222 221 1111 03578999999765 5556677999999999999 9 9988776
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=117.50 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
+..+|||||||+|.++..|+++ .++++|+ +.++..+. + .+.+.++.+ ... +++. ||+|+++.+
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-----~--~~~v~~~~~d~~~-~~~~--~D~v~~~~~- 276 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----P--LSGIEHVGGDMFA-SVPQ--GDAMILKAV- 276 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C--CTTEEEEECCTTT-CCCC--EEEEEEESS-
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-----h--cCCCEEEeCCccc-CCCC--CCEEEEecc-
Confidence 4689999999999999988764 5788899 87665443 1 233444444 434 6665 999999865
Q ss_pred cccccChH--HHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGG--KLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~--~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+..+.. .+|++++|+|||||+|++..
T Consensus 277 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 277 CHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 56555555 99999999999999999874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-10 Score=110.71 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC---CCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF---PRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf---pd~SFDlV~Ss~~al 542 (870)
+++.+|||||||. +++|+++.|+..|+.+.. ....+...+...+++ ++++||+|+|+. ++
T Consensus 11 ~~g~~vL~~~~g~------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~-~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHKESSFDIILSGL-VP 73 (176)
T ss_dssp CTTSEEEEEECTT------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCCSSCEEEEEECC-ST
T ss_pred CCCCEEEEecCCc------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCCCCCEeEEEECC-hh
Confidence 4688999999996 238999988877664321 124455556677776 889999999986 47
Q ss_pred ccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||. .+...+|.+++|+|||||+|++..
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 877 888999999999999999999973
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=7e-09 Score=113.11 Aligned_cols=102 Identities=16% Similarity=0.007 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..++. ..|+|+|+++.++..|+. .+...|+. ..+...+...++.+...||+|+|+.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~-n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-AALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH-HHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH-HHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 4578999999999998877765 489999999999998874 45556664 4455556678887777899999974
Q ss_pred cccccccC--------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHID--------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. +.+... ...++.++.++|||||.+++.+
T Consensus 281 P-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 281 P-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp C-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred C-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 221111 1578999999999999999984
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-09 Score=105.69 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC-----CCcEEE-EcCcccCCCCCCceeE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG-----IPAISA-VMGTKRLQFPRNVFDL 534 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg-----l~~~~~-v~dae~LPfpd~SFDl 534 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..++..... .+ ...+.+ ..+....+...+.||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4578999999999998887764 3799999999999888754433 22 233334 4444444555678999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|++... ++ .++.++.++|||||+|+++..
T Consensus 155 i~~~~~-~~------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAA-AP------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSB-BS------SCCHHHHHTEEEEEEEEEEES
T ss_pred EEECCc-hH------HHHHHHHHhcCCCcEEEEEEe
Confidence 998743 32 234688999999999999843
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=115.48 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~ 540 (870)
.+..+|||||||+|.++..|+++ .++++|+ |.++..|. . .+.+.++.+ ... |+|.+ |+|++..+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~~v~~~~~D~~~-~~p~~--D~v~~~~v 268 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----Q--FPGVTHVGGDMFK-EVPSG--DTILMKWI 268 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C--CTTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----h--cCCeEEEeCCcCC-CCCCC--CEEEehHH
Confidence 35689999999999999888763 7899999 76654432 1 234555554 444 77765 99999876
Q ss_pred cccccc-ChHHHHHHHHhhcCCCcEEEEEECCCcCch--h--HHHHHHHhhccc--ccccchhHHHHHHHHHhhccceEE
Q 002884 541 RVPWHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKL--G--EDVEIWNAMSNL--TVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 541 alhw~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL--~--El~~~w~~~~~l--a~~mcW~~va~~~~~L~daGfaI~ 613 (870)
+.+|.. +...+|++++++|||||+|++......... . .....+..+.-+ ......+...+....+.++||.+.
T Consensus 269 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v 348 (364)
T 3p9c_A 269 LHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGV 348 (364)
T ss_dssp GGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEE
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceE
Confidence 444542 236899999999999999999854433211 1 100011111111 001111223356677889999887
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
+
T Consensus 349 ~ 349 (364)
T 3p9c_A 349 K 349 (364)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-09 Score=107.17 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccC---CCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRL---QFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~L---Pfpd~SFDlV~ 536 (870)
.++.+|||+|||+|.++..|++ ..|+++|+++.++..+.. .+... +.+.++ .+.... +...++||+|+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~-~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP-IVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHH-HHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 3578999999999999988874 379999999998877653 33322 334444 444331 22245899999
Q ss_pred ecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+... ..+. ..++.++.++|||||+|++.
T Consensus 149 ~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 149 EDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8632 2333 35599999999999999997
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=109.63 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-ccc-CCCC--CCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKR-LQFP--RNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~-LPfp--d~SFDlV~S 537 (870)
++.+|||||||+|.++..|+. ..|+++|+++.++..|+..+ ...++. .+.++.+ ... ++.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHV-KALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHH-HHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 467999999999998888875 37999999999988887443 344553 3444443 333 3433 578999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... ..+...+|.++.++|||||+|++..
T Consensus 133 ~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAA----KGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGG----GSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 642 2367899999999999999999973
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-09 Score=107.00 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCchhHHHHhc----------CCEEEEeCChhhHHHHHHHHHHHcC-----CCcEEEEcCcccCCCCC-
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----------RDVLTMSFAPKDEHDAQIQFALERG-----IPAISAVMGTKRLQFPR- 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----------r~VtgVDiSp~ml~~A~vq~A~erg-----l~~~~~v~dae~LPfpd- 529 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..++...... + ...+.++.++...++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD-DRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH-HHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc-CccccCCCceEEEECCcccCCCcC
Confidence 4578999999999998887765 27999999999998887554432 2 23344444432235555
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|++... +++. +.++.++|||||+|++..
T Consensus 162 ~~fD~I~~~~~-~~~~------~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAA-APDT------PTELINQLASGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSC-BSSC------CHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCc-hHHH------HHHHHHHhcCCCEEEEEE
Confidence 78999999753 4432 378999999999999984
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-09 Score=104.06 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc-------------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-c-CcccCC----
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-------------RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-M-GTKRLQ---- 526 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-------------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~-dae~LP---- 526 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.. .++...++ . +....+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------------cCCCCeEEEeccCCCHHHHHH
Confidence 4578999999999999888865 359999999842 12223333 3 322221
Q ss_pred ----CCCCceeEEEeccc---ccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 527 ----FPRNVFDLVHCARC---RVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 ----fpd~SFDlV~Ss~~---alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++++||+|+|..+ ..+|..+. ..+|.++.|+|||||.|++..
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 34568999999632 12222333 478999999999999999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-09 Score=112.50 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH---HcCCCcEEEE-cCcccCCC--CCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL---ERGIPAISAV-MGTKRLQF--PRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~---ergl~~~~~v-~dae~LPf--pd~SFDlV 535 (870)
..+.+|||||||+|.++..|++. .|+++|+++.++..++..+.. ....+.+.++ .+...++. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35689999999999999998864 799999999998887754421 1112334444 44444432 47889999
Q ss_pred EecccccccccCh----HHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDG----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++... .++.... ..++.++.|+|||||+|++..
T Consensus 174 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99643 4432222 688999999999999999974
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=115.32 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss 538 (870)
..++.+|||+|||+|..+..|+. ..|+++|+++.++..++. .+...|+..+.++. +...++..+++||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence 34678999999999998888874 269999999999988874 44455665555554 445555456789999973
Q ss_pred c-----cccccccC----------------hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 R-----CRVPWHID----------------GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~-----~alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. ..++.+++ ...+|.++.++|||||+|++++.
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 1 11221111 14889999999999999999854
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-09 Score=109.81 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCC---CCCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQ---FPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LP---fpd~SFDlV 535 (870)
..++.+|||||||+|.++..|++. .|+|+|+++.|+.... +.+..+ .++..+ .++.... ...++||+|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~-~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I 150 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL-LVAQRR--PNIFPLLADARFPQSYKSVVENVDVL 150 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH-HHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhc--CCeEEEEcccccchhhhccccceEEE
Confidence 356899999999999999888753 7999999999875433 344444 234444 4443221 224689999
Q ss_pred EecccccccccChHH-HHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGK-LLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~-vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++... . .+... ++..+.++|||||+|+++.
T Consensus 151 ~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 151 YVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp EECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99742 2 34444 4456667999999999983
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.6e-10 Score=123.63 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCEEEEECCC------CchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC------C
Q 002884 467 YTRVSLDVGCG------VASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP------R 529 (870)
Q Consensus 467 ~~~~VLDIGCG------tG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp------d 529 (870)
+..+||||||| +|..+..++. ..|+|+|+++.|. .......+.+.+...+||. +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 46899999999 6655444442 3899999999872 1222234455566788887 7
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|+|.. .|+..+...+|.+++|+|||||+|++.+
T Consensus 287 ~sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 287 GPFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CCEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 8999999973 4555677899999999999999999984
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=113.51 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCC-------CcEEE--EcCcccCCCCCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGI-------PAISA--VMGTKRLQFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl-------~~~~~--v~dae~LPfpd~SFDlV 535 (870)
.++.+|||||||+|.++..|+++ .|+|+|+++ |+..+ .+... ...+. ..+...+| +++||+|
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a-----~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGG-----HEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSS-----CCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhh-----hhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEE
Confidence 45789999999999999999875 899999999 53211 11111 22333 33445555 7889999
Q ss_pred EecccccccccC----hH---HHHHHHHhhcCCCc--EEEEEE
Q 002884 536 HCARCRVPWHID----GG---KLLLELNRVLRPGG--YFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D----~~---~vL~Ei~RVLKPGG--~Lv~S~ 569 (870)
+|..+ +...+ .. .+|.++.|+||||| .|++..
T Consensus 145 ~sd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 145 MCDVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEeCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 99743 32222 12 37899999999999 999874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-08 Score=112.23 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cCC--CcEEEEc-Cccc-CC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RGI--PAISAVM-GTKR-LQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rgl--~~~~~v~-dae~-LP-fpd~SFDlV~ 536 (870)
...+|||||||+|.++..|+++ +|+++|+++.++..|+..+... .++ +.+.++. +... ++ +++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4689999999999999999865 7999999999998887554331 122 3344444 4332 22 3567899999
Q ss_pred eccccccccc--C--hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHI--D--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~--D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. ..+++. + ...++.++.|+|+|||+|++.
T Consensus 200 ~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECC-CCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 963 233321 1 368999999999999999997
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.9e-10 Score=114.95 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCCCC-----CCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQFP-----RNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LPfp-----d~SFD 533 (870)
++.+|||||||+|..+..|+.. .|+++|+++.++..|+. .+...++. .+.++.+ . ..++.. .++||
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP-YWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH-HHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4679999999999999888762 79999999999888774 44445553 4445444 3 223322 47899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+|++.. +..+...+|.++.++|||||+|++....
T Consensus 139 ~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 139 FIFIDA----DKTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEES----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEEcC----ChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 999863 2445678999999999999999997544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=109.41 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.. +...++ +.+.++.+ .... +++++||+|+++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~ 188 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEG-FDEKDVDALFLD 188 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence 45789999999999988877643 799999999998888743 344454 34444444 3333 667889999985
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .++..+|.++.++|+|||.|++..
T Consensus 189 ~------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 189 V------PDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp C------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred C------cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 356689999999999999999984
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-09 Score=117.10 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-CEEEEeC----ChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-DVLTMSF----APKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-~VtgVDi----Sp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|+++ .|+|+|+ ++.++..+. ....+.+.+.++.+.....++.++||+|+|..+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~ 157 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIG 157 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCCcCCCCEEEECCc
Confidence 45789999999999999999886 7999999 554331110 011122455566552223334678999999643
Q ss_pred c--cccccChH---HHHHHHHhhcCCCcEEEEEE
Q 002884 541 R--VPWHIDGG---KLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 a--lhw~~D~~---~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .+|..+.. .+|.++.|+|||||.|++..
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 12322322 57899999999999999874
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-09 Score=110.93 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++.+..++. +...++. .+.||+|++...
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence 45789999999999999988763 79999999999988874 45556665554544 4455544 678999999743
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+...++.++.++|||||+|+++..
T Consensus 196 -----~~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 196 -----HKTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----ccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1567889999999999999998843
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-09 Score=115.08 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=85.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
+..+|||||||+|.++..|+++ +++++|+ +.++..+. + .+.+.++.+ ... +++. ||+|++..+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~~v~~~~~d~~~-~~p~--~D~v~~~~~- 255 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----G--SNNLTYVGGDMFT-SIPN--ADAVLLKYI- 255 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C--BTTEEEEECCTTT-CCCC--CSEEEEESC-
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc-----c--CCCcEEEeccccC-CCCC--ccEEEeehh-
Confidence 4679999999999999988753 7999999 88765443 1 123444444 333 5653 999999875
Q ss_pred cccccChH--HHHHHHHhhcCC---CcEEEEEECCCcCc--h---hHHHHHHHhhccc-ccccchhHHHHHHHHHhhccc
Q 002884 542 VPWHIDGG--KLLLELNRVLRP---GGYFVWSATPVYQK--L---GEDVEIWNAMSNL-TVSMCWELVTIKMDKLNSAGF 610 (870)
Q Consensus 542 lhw~~D~~--~vL~Ei~RVLKP---GG~Lv~S~~p~~~t--L---~El~~~w~~~~~l-a~~mcW~~va~~~~~L~daGf 610 (870)
+|+..+.. .+|++++|+||| ||+|++........ . .+. ..+..+..+ .....+ ...+....+.++||
T Consensus 256 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~-~~~~d~~~~~~~g~~~-t~~e~~~ll~~aGf 333 (352)
T 1fp2_A 256 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI-KLLMDVNMACLNGKER-NEEEWKKLFIEAGF 333 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHH-HHHHHHHGGGGTCCCE-EHHHHHHHHHHTTC
T ss_pred hccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhh-HhhccHHHHhccCCCC-CHHHHHHHHHHCCC
Confidence 55445555 999999999999 99999985433221 1 111 111111000 011112 23356677888999
Q ss_pred eEEE
Q 002884 611 AIYR 614 (870)
Q Consensus 611 aI~r 614 (870)
.+.+
T Consensus 334 ~~~~ 337 (352)
T 1fp2_A 334 QHYK 337 (352)
T ss_dssp CEEE
T ss_pred CeeE
Confidence 8765
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-10 Score=118.60 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCC-------CcEEE--EcCcccCCCCCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGI-------PAISA--VMGTKRLQFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl-------~~~~~--v~dae~LPfpd~SFDlV 535 (870)
.++.+|||||||+|.++..|+++ .|+|+|+++ |+..+ .++.. ...+. ..+...+| +++||+|
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a-----~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSG-----HEKPRLVETFGWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTT-----SCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhh-----hhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence 45789999999999999999875 899999999 63221 11121 22333 33455555 6889999
Q ss_pred EecccccccccC----hH---HHHHHHHhhcCCCc--EEEEEE
Q 002884 536 HCARCRVPWHID----GG---KLLLELNRVLRPGG--YFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D----~~---~vL~Ei~RVLKPGG--~Lv~S~ 569 (870)
+|..+ ++..+ .. .+|.++.|+||||| .|++..
T Consensus 153 vsd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 153 LCDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 99743 32222 11 37899999999999 999863
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-09 Score=112.08 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHc------C----CCcEEE-EcCcccC--CC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALER------G----IPAISA-VMGTKRL--QF 527 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~er------g----l~~~~~-v~dae~L--Pf 527 (870)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..|+....... + ...+.+ ..+...+ ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 4678999999999998888765 379999999999988886554321 1 123334 4444444 56
Q ss_pred CCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 528 PRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++++||+|++.. .++..++.++.++|||||.|++..
T Consensus 184 ~~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 184 KSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ----EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 778899999863 123348999999999999999874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-09 Score=111.70 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cccc---CCCCC-Ccee
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKR---LQFPR-NVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~---LPfpd-~SFD 533 (870)
++.+|||||||+|..+..|++ ..|+|+|+++.|+..|+ ... +.+.++. +... +++.. .+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~-~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDM-ENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGC-TTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccC-CceEEEECcchhHHHHHhhccCCCC
Confidence 357999999999998887754 38999999999876554 122 3344444 4444 35444 4799
Q ss_pred EEEecccccccccChHHHHHHHHh-hcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNR-VLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~R-VLKPGG~Lv~S~ 569 (870)
+|++... | .+...+|.++.| +|||||+|++.+
T Consensus 155 ~I~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 155 LIFIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEEEESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EEEECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 9998632 3 467889999998 999999999973
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=112.79 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc-Cccc--C-CCC---CCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM-GTKR--L-QFP---RNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~-dae~--L-Pfp---d~SFDl 534 (870)
++.+|||||||+|.++..|+. ..|+|+|+++.|+..|+.. +...++.. +.++. +... + +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 467999999999998877764 3899999999999988854 44456542 44444 3333 1 455 368999
Q ss_pred EEecccccccc--------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 535 VHCARCRVPWH--------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 535 V~Ss~~alhw~--------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+|+...++.. .....++.+++|+|||||.|++.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99984322211 01124578899999999998775
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.2e-09 Score=104.74 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---------CEEEEeCChhhHHHHHHHHHHHcC-----CCcEEEEc-CcccCC----
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---------DVLTMSFAPKDEHDAQIQFALERG-----IPAISAVM-GTKRLQ---- 526 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---------~VtgVDiSp~ml~~A~vq~A~erg-----l~~~~~v~-dae~LP---- 526 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..|+..... .+ ...+.++. +....+
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR-DKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH-HCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH-cCccccccCCEEEEECChHhcccccC
Confidence 35789999999999988887652 799999999999888754443 34 34444444 444444
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+..+.||+|++... +++ ++.++.++|||||+|++..
T Consensus 158 ~~~~~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 158 KELGLFDAIHVGAS-ASE------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHCCEEEEEECSB-BSS------CCHHHHHHEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCc-hHH------HHHHHHHhcCCCcEEEEEE
Confidence 45678999999743 443 3588899999999999984
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-09 Score=110.08 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCCC------CCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQF------PRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LPf------pd~SF 532 (870)
+..+|||||||+|..+..|+. ..|+++|+++.++..|+.. ....++. .+.++.+ . ..++. ++++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV-IKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 467999999999998887764 3899999999999888744 3445553 3444443 3 23332 25789
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+|++.. +..+...++.++.++|||||+|++...
T Consensus 158 D~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 158 DFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp SEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEEcC----chHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999863 234568999999999999999998743
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=114.06 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-Ccc
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTK 523 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae 523 (870)
..|.+.|.+....+ ++.+|||||||+|.++...++. +|+|+|.++ |+..|+ +.++..|+. .+.++. +.+
T Consensus 69 ~aY~~Ai~~~~~~~----~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~-~~~~~n~~~~~i~~i~~~~~ 142 (376)
T 4hc4_A 69 DAYRLGILRNWAAL----RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAR-EVVRFNGLEDRVHVLPGPVE 142 (376)
T ss_dssp HHHHHHHHTTHHHH----TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhCHHhc----CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHH-HHHHHcCCCceEEEEeeeee
Confidence 44555554432221 4789999999999888776654 799999997 777766 556666664 344444 456
Q ss_pred cCCCCCCceeEEEecc--cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 524 RLQFPRNVFDLVHCAR--CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 524 ~LPfpd~SFDlV~Ss~--~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+.+| +.||+|+|-. ..+.+......++....|.|||||.++.+
T Consensus 143 ~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 143 TVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 77776 5799999831 12333345688999999999999999843
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=119.50 Aligned_cols=99 Identities=14% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI-PAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..++.. +|+|+|+++ ++..|+ +.+...++ ..+.++. +...++++ +.||+|+|+...
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 5689999999999999888764 799999998 887766 44555565 3444444 45666665 579999997532
Q ss_pred cccc-cChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWH-IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~-~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.++. .+....|.++.++|||||+|++.
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3332 22356778899999999999964
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=107.92 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccC
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRL 525 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~L 525 (870)
.+.+.+...+.. .++.+|||||||+|.++..|+. ..|+|+|+++.++..|+. .+...++.. +.++.++..-
T Consensus 110 ~lv~~~l~~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~~~ 184 (284)
T 1nv8_A 110 ELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFLE 184 (284)
T ss_dssp HHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTTG
T ss_pred HHHHHHHHHhcc----cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcchh
Confidence 344444444332 1457999999999999888875 389999999999998874 455556653 4454443211
Q ss_pred CCCCCce---eEEEecccccc----------cc--------cChHHHHHHHH-hhcCCCcEEEEE
Q 002884 526 QFPRNVF---DLVHCARCRVP----------WH--------IDGGKLLLELN-RVLRPGGYFVWS 568 (870)
Q Consensus 526 Pfpd~SF---DlV~Ss~~alh----------w~--------~D~~~vL~Ei~-RVLKPGG~Lv~S 568 (870)
+++ ++| |+|+|+.-.+. |. .+...+++++. +.|+|||+|++.
T Consensus 185 ~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 185 PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 333 478 99999731111 11 11227899999 999999999996
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-09 Score=106.05 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc-----ccCCCCC--Ccee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT-----KRLQFPR--NVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da-----e~LPfpd--~SFD 533 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+..+. ..++. .+.++.+. ..+++.+ ++||
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4679999999999999888763 79999999999988875443 34543 34444432 2344444 7899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|++.. ...+...++.++.++|||||+|++...
T Consensus 151 ~V~~d~----~~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 151 LIFIDA----DKRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEEECC----CHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999863 234568899999999999999999743
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-09 Score=113.67 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhhh--hcCC-CCCEEEEECCCCchhHHHHhc-C---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cC
Q 002884 450 HYIDFIQQAVPKI--AWGK-YTRVSLDVGCGVASFGGYLFE-R---DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MG 521 (870)
Q Consensus 450 ~Yid~L~~~Lp~i--~~g~-~~~~VLDIGCGtG~~a~~La~-r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~d 521 (870)
.|.+.|...+..+ .... +..+|||||||+|.++..|++ . +|+++|+++.++..|+..+... ..+.+.++ .+
T Consensus 69 ~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~D 147 (317)
T 3gjy_A 69 EYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDD 147 (317)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECc
Confidence 4666555544321 1121 234999999999999999887 2 7999999999887776443221 12334444 44
Q ss_pred cccC--CCCCCceeEEEecccccccc----cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 522 TKRL--QFPRNVFDLVHCARCRVPWH----IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 522 ae~L--Pfpd~SFDlV~Ss~~alhw~----~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
...+ .+++++||+|++.. ..++. .....++.+++|+|+|||+|++..
T Consensus 148 a~~~l~~~~~~~fDvIi~D~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 148 ARMVAESFTPASRDVIIRDV-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp HHHHHHTCCTTCEEEEEECC-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhccCCCCCEEEECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 3322 35578999999963 23322 122789999999999999999874
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=103.02 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCC--------C---CCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQF--------P---RNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPf--------p---d~S 531 (870)
.++.+|||||||+|.++..|+++ .|+|+|+++.. .++.+.++ .+....+. . .++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~------------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME------------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC------------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc------------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 46789999999999999999875 89999999852 12333344 44444431 1 148
Q ss_pred eeEEEecccccc----cccC-------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCARCRVP----WHID-------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~~alh----w~~D-------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||+|+|... .. +..+ ...+|..+.++|||||.|++..
T Consensus 92 ~D~Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 92 VDDVVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999999632 21 1111 1467889999999999999873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.4e-09 Score=106.16 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-c-ccCC------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-T-KRLQ------------ 526 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-a-e~LP------------ 526 (870)
++.+|||||||+|.++..|+. ..|+++|+++.++..|+..+ ...++.. +.++.+ . ..++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 467999999999998888864 37999999999988887443 3445543 444433 2 2122
Q ss_pred --CCC--CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 --FPR--NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 --fpd--~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|++ ++||+|++.. ...+...+|.++.++|||||+|++..
T Consensus 139 ~~f~~~~~~fD~I~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDA----DKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeC----CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 7899999863 23455789999999999999999974
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=108.32 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC--CCcEEEEc-Ccc-cCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG--IPAISAVM-GTK-RLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg--l~~~~~v~-dae-~LPfpd~SFDlV~S 537 (870)
.+.+|||||||+|.++..++++ +|+++|+++.++..|+..+..- .+ .+.+.++. +.. .++...++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4689999999999999998864 7999999999998887544321 12 23444444 432 24445678999999
Q ss_pred cccccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... .++... ...++.++.|+|+|||+|++..
T Consensus 155 d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 642 333221 2689999999999999999973
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=114.44 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC--CCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ--FPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP--fpd~SFDlV~ 536 (870)
..++.+|||+|||+|..+..|+. ..|+++|+++.++..+.. .+...|+..+.++. +...++ +++++||+|+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKD-FVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL 335 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence 34678999999999998888875 379999999999887763 44555775555544 445555 5667899999
Q ss_pred e-----cccccccccCh----------------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 C-----ARCRVPWHIDG----------------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 S-----s~~alhw~~D~----------------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ ....++.+++. ..+|.++.++|||||+|++++..
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6 22223322222 46899999999999999998543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=110.32 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcC-cccC-CC---CCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMG-TKRL-QF---PRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~d-ae~L-Pf---pd~SFDlV~S 537 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+.+. ...++.. +.++.+ ...+ +. ..+.||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~-~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQ-VLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-HHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4679999999999999988865 7999999999999888544 4445542 444444 3332 21 1568999999
Q ss_pred ccccc---------ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRV---------PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~al---------hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
..-.+ ++..+...++.++.++|+|||+|++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 53211 1223457899999999999999887643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-09 Score=122.06 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-CCcEEEEcCcccC--CCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG-IPAISAVMGTKRL--QFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg-l~~~~~v~dae~L--Pfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||.|.++..|++. .|+|||+++.++..|+ ..|.+.| +.+.+.+.+.+.+ ++.++.||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~- 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV- 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC-
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc-
Confidence 3579999999999999999976 8999999999999988 4566665 4444445555666 567889999999865
Q ss_pred cccccChH--HHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGG--KLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~--~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..++. ..+..+.+.|+++|..++..
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 66666653 34556778888887766553
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=109.28 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH-HcC---CCcEEEEc-Cccc-CCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL-ERG---IPAISAVM-GTKR-LQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~-erg---l~~~~~v~-dae~-LPfpd~SFDlV~ 536 (870)
...+|||||||+|.++..|+++ +|+++|+++.++..|+..+.. ..+ .+.+.++. +... ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4689999999999999999865 799999999999888755433 122 23444444 4332 444568899999
Q ss_pred eccccccc---cc--C--hHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPW---HI--D--GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw---~~--D--~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.. ..++ .. . ...++.++.|+|||||+|++..
T Consensus 157 ~d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 974 3454 21 1 2689999999999999999873
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=108.61 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC--CCcEEEEcC-cc-cCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG--IPAISAVMG-TK-RLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg--l~~~~~v~d-ae-~LPfpd~SFDlV~S 537 (870)
.+.+|||||||+|.++..+++. +|+++|+++.++..|+..+..- .+ .+.+.++.+ .. .++...++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999999864 7999999999998887544321 11 234444443 32 24445678999998
Q ss_pred ccccccccc-----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHI-----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~-----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... .+|.. ....++.++.++|||||+|++..
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 532 23221 22689999999999999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=106.13 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCC----CCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQF----PRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPf----pd~SFDlV 535 (870)
.++.+|||+|||+|.++..|+. ..|+++|+++.++..++. .+...|+..+.++. +...++. ..+.||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 4678999999999999888875 379999999999987764 44556665544444 4444443 35789999
Q ss_pred Eecc-cc----cc------------cccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 536 HCAR-CR----VP------------WHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 536 ~Ss~-~a----lh------------w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
++.. |. ++ .......+|.++.++|||||+|++++..
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 9851 10 11 1123478899999999999999998543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=102.98 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=72.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-cc-cCC-CC--C--Ccee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TK-RLQ-FP--R--NVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae-~LP-fp--d--~SFD 533 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+.. ....++ ..+.++.+ .. .++ ++ . ++||
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL-WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4679999999999999888763 799999999999888744 344555 34444443 22 211 11 1 6899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|++... ..+...++.++.++|||||+|++...
T Consensus 148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998632 34557899999999999999999743
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=108.77 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC--CCcEEEEcC-cc-cCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG--IPAISAVMG-TK-RLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg--l~~~~~v~d-ae-~LPfpd~SFDlV~S 537 (870)
.+.+|||||||+|.++..+++. +|+++|+++.++..|+..+... .+ .+.+.++.+ .. .++..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4689999999999999998864 7999999999988777443220 11 233444443 32 23334678999998
Q ss_pred ccccccccc--Ch--HHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHI--DG--GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~--D~--~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. ..++.. .. ..++.++.++|||||+|++..
T Consensus 196 d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 63 233322 11 689999999999999999974
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-08 Score=106.97 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcEEEEc-Cccc-CCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAISAVM-GTKR-LQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~~~v~-dae~-LPfpd~SFDlV~S 537 (870)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+.... ..+.+.++. +... ++...++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4689999999999999999864 79999999998877764332110 023344444 4322 3333678999999
Q ss_pred cccccccccC--h--HHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHID--G--GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D--~--~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. ..++... . ..++..+.++|+|||+|++..
T Consensus 158 d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 158 DS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 53 2343322 2 689999999999999999974
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-08 Score=107.32 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC--CCcEEEEc-Ccc-cCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG--IPAISAVM-GTK-RLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg--l~~~~~v~-dae-~LPfpd~SFDlV~S 537 (870)
.+.+|||||||+|.++..|+++ +|+++|+++.++..|+..+..- .+ .+.+.++. +.. .++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999999865 7999999999998887554331 12 23344444 432 24555788999998
Q ss_pred cccccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. ..++... ...++.++.|+|||||+|++..
T Consensus 175 d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 63 2333221 2468999999999999999874
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=105.57 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-C-----CCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-F-----PRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-f-----pd~SF 532 (870)
+..+|||||||+|..+..|+. .+|+++|+++.++..|+.. ....|+. .+.++.+ . ..++ + +.++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF-IRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 467999999999998887764 3899999999999888744 4445654 3444443 3 2223 2 25789
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+|++.. +..+...++..+.++|||||+|++...
T Consensus 149 D~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECC----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9999852 345568899999999999999998743
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=113.63 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--CCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--FPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--fpd~SFDlV~Ss 538 (870)
..++.+|||+|||+|..+..|+. ..|+++|+++.++..+.. .+...|+...+...+...++ ++++.||+|++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~-~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD-NLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHH-HHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-HHHHcCCCeEEEeCchhhchhhcccCCCCEEEEe
Confidence 35678999999999998888875 379999999999988774 44455666555555555555 566789999962
Q ss_pred -----ccccccccCh----------------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 -----RCRVPWHIDG----------------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 -----~~alhw~~D~----------------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
...++.+++. ..+|..+.++|||||+|++++..
T Consensus 323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1112222221 37899999999999999998543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-08 Score=96.41 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..++.... ...+...+...+| ++||+|+++.. ++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D~v~~~~p-~~ 121 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPP-FG 121 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCC-C-
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCeeEEEECCC-ch
Confidence 5679999999999999988865 59999999998877664322 3344555555654 68999999864 44
Q ss_pred cccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..+ ...++.++.++| |+++++.
T Consensus 122 ~~~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 122 SVVKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ------CHHHHHHHHHHE--EEEEEEE
T ss_pred hccCchhHHHHHHHHHhc--CcEEEEE
Confidence 4432 257899999999 5544443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=110.88 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC--CCcEEEEcC-cc-cCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG--IPAISAVMG-TK-RLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg--l~~~~~v~d-ae-~LPfpd~SFDlV~S 537 (870)
...+|||||||+|.++..|++. +|+++|+++.++..|+..+... .+ .+.+.++.+ .. .++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4679999999999999999864 7999999999888877543221 01 233444444 32 23445678999998
Q ss_pred cccccccccCh----HHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDG----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. ..++.... ..++.++.++|+|||+|++..
T Consensus 188 d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 64 23332221 588999999999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.9e-08 Score=105.54 Aligned_cols=99 Identities=10% Similarity=-0.074 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCC-CCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQF-PRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPf-pd~SFDlV~Ss~ 539 (870)
++.+||||| |+|.++..|+.. .|+++|+++.|+..|+. .+...|+..+.++.+ ... +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK-AANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH-HHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 468999999 999998887642 79999999999988874 444556644444444 444 664 457899999974
Q ss_pred cccccccChHHHHHHHHhhcCCCc-EEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGG-YFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG-~Lv~S~ 569 (870)
. ++.. ....+|.++.++||||| +++++.
T Consensus 250 p-~~~~-~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 P-ETLE-AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp C-SSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred C-CchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence 2 3222 25789999999999999 446653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=110.18 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
...+|||||||+|.++..|+++ .++++|+ +.++..+. + .+.+.++.+ ... |++ .||+|+++.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~~v~~~~~d~~~-~~~--~~D~v~~~~v- 260 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT-----G--NENLNFVGGDMFK-SIP--SADAVLLKWV- 260 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC-----C--CSSEEEEECCTTT-CCC--CCSEEEEESC-
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc-----c--CCCcEEEeCccCC-CCC--CceEEEEccc-
Confidence 4579999999999999888764 6889999 66654332 1 233444444 334 666 3999999865
Q ss_pred cccccChH--HHHHHHHhhcCC---CcEEEEEECCCcCc--h---hHHHHHHHhhc--ccccccchhHHHHHHHHHhhcc
Q 002884 542 VPWHIDGG--KLLLELNRVLRP---GGYFVWSATPVYQK--L---GEDVEIWNAMS--NLTVSMCWELVTIKMDKLNSAG 609 (870)
Q Consensus 542 lhw~~D~~--~vL~Ei~RVLKP---GG~Lv~S~~p~~~t--L---~El~~~w~~~~--~la~~mcW~~va~~~~~L~daG 609 (870)
+|+..+.. .+|++++|+||| ||+|++........ . .... .+..+. .......+ ...+....+.++|
T Consensus 261 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~~-t~~e~~~ll~~aG 338 (358)
T 1zg3_A 261 LHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQ-LDYDLVMLTMFLGKER-TKQEWEKLIYDAG 338 (358)
T ss_dssp GGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHH-HHHHHHHHHHHSCCCE-EHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHH-HhhCHHHhccCCCCCC-CHHHHHHHHHHcC
Confidence 66556655 999999999999 99999875432221 1 1111 111110 01111112 2335667788899
Q ss_pred ceEEE
Q 002884 610 FAIYR 614 (870)
Q Consensus 610 faI~r 614 (870)
|.+.+
T Consensus 339 f~~~~ 343 (358)
T 1zg3_A 339 FSSYK 343 (358)
T ss_dssp CCEEE
T ss_pred CCeeE
Confidence 98766
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-08 Score=110.93 Aligned_cols=104 Identities=17% Similarity=0.007 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc-CCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR-LQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~-LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.+ +...++...+...+... ++...+.||+|++..-.+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 4789999999999999988864 699999999999988854 44456654444545432 2222334999999643222
Q ss_pred cc--------cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 544 WH--------IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 544 w~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.. .+...++..+.++|||||+|++++..
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11 12357889999999999999977443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=110.16 Aligned_cols=100 Identities=19% Similarity=0.074 Sum_probs=72.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI--PAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..++.. .|+|+|+++.|+..|+. .+...|+ ...+...+...+|+++++||+|+|+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~-n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEM-NALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHH-HHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45789999999999999888763 79999999999998884 4555666 34455666788888889999999974
Q ss_pred cccccc-------cCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWH-------IDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~-------~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
- +... .+. ..++.++.|+| +|+.++++
T Consensus 295 P-yg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 295 P-YGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp C-CC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred C-CCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 2 1111 111 56888999999 44444443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-08 Score=106.69 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~~a 541 (870)
...+|||||||+|.++..|+++ +++..|+ |.++..|.... ...+.+.+.++.++ ...|++ .+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~-~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHF-SFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHS-CC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhh-hhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 4679999999999999988875 6777787 66666655322 22334556666554 334444 47999998764
Q ss_pred cccccCh-HHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHHHHH-hhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVEIWN-AMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~~w~-~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.+|..+. ..+|++++++|+|||.|++........ .+.....+. .|-....+... ...+....+.++||.+.+
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~er-t~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQER-TPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCC-CHHHHHHHHHHHTCEEEE
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCC-CHHHHHHHHHHCCCceEE
Confidence 4454322 678999999999999999986543321 111111111 11111111222 233566778999998876
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-08 Score=104.85 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-C---------CCcEEEEcC-cc-cCCCCCCc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-G---------IPAISAVMG-TK-RLQFPRNV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-g---------l~~~~~v~d-ae-~LPfpd~S 531 (870)
.+.+|||||||+|.++..++++ +|+++|+++.++..|+..+ ... + .+.+.++.+ .. .++. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4689999999999999998865 7999999999988887544 110 1 233444443 32 2333 578
Q ss_pred eeEEEeccccccccc--C--hHHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCARCRVPWHI--D--GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~~alhw~~--D--~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||+|++... .++.. . ...++.++.++|+|||+|++..
T Consensus 153 fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999998642 33322 1 2678999999999999999873
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-08 Score=107.99 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcC-ccc-CCC---CCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMG-TKR-LQF---PRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~d-ae~-LPf---pd~SFDlV~ 536 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+. .+...++. .+.++.+ ... ++. ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4679999999999999998873 79999999999998884 45555664 4545544 322 331 245899999
Q ss_pred eccccc----ccccC----hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRV----PWHID----GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~al----hw~~D----~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+..-.+ ....+ ...++..+.++|+|||+|+++..+
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 853222 12222 245778889999999999998543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=114.43 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC-CCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ-FPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP-fpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..+.. .+...|+. +.++. +...++ +..++||+|++.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~-n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE-NVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 46789999999999988888742 79999999999988774 45556776 44443 444444 346789999952
Q ss_pred -----ccccccccCh----------------HHHHHHHHhhcCCCcEEEEEECCC
Q 002884 539 -----RCRVPWHIDG----------------GKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 539 -----~~alhw~~D~----------------~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+...++. ..+|.++.++|||||+|++++...
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1112111111 578999999999999999985443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=106.82 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEE-EcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISA-VMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~-v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.|+..+.... ...+. +...+ ..+...++++ +||+|+++. .
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nl-p 102 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGDVLKTDLP--FFDTCVANL-P 102 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESCTTTSCCC--CCSEEEEEC-C
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcceecccch--hhcEEEEec-C
Confidence 45789999999999999999864 8999999999988776433 22233 33444 4455666665 699999974 3
Q ss_pred cccccCh-HHHH--------------HHH--HhhcCCCcEEE
Q 002884 542 VPWHIDG-GKLL--------------LEL--NRVLRPGGYFV 566 (870)
Q Consensus 542 lhw~~D~-~~vL--------------~Ei--~RVLKPGG~Lv 566 (870)
++|..+. ..+| +|+ +++|+|||.++
T Consensus 103 y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 103 YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 5554332 2222 233 37999999874
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-07 Score=92.70 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..++.. +...++...+...+...+| ++||+|+++.. +
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~ 122 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-F 122 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCC-C
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCC-C
Confidence 35789999999999999988765 599999999998887743 3344543344444555554 48999999854 3
Q ss_pred cccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++.. ....++.++.++| ||.+++.
T Consensus 123 ~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 123 GSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 3322 2367899999999 6655443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-06 Score=97.64 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=74.5
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHH----HhhCccc---eeccccccccCCC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPII----YERGLFG---IYHDWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i----~eRGlig---~~h~wce~f~tyP-rtyDllHa~~ 791 (870)
..|||+|||+|.|+.+|... +. .|+-+|.. ..+..+ ...|+-. +--.+...+..+| .+||+|.++.
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 56999999999999999876 22 23334433 333332 3345432 2011222233455 7999999988
Q ss_pred cccccc--CCcChhhHHHhhhhcccCCcEEEEecC--hhhHHHHHHHHHcCCceEEEeecCCCceEEEEE
Q 002884 792 LFSQLK--NRCKLVPVMAEVDRIVRPGGKLIVRDE--PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQ 857 (870)
Q Consensus 792 lfS~~~--~rc~~~~vl~EmDRILRPgG~~iird~--~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~ 857 (870)
.|.... .+-....+|.++-|+|||||.+||..+ ..+...++.++. .+.......+-+|+-+.
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg----~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAV 366 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS----CCEEEEECSSEEEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC----CEEEEeeCCCEEEEEEc
Confidence 875421 122334689999999999999999643 334455555544 34443344455555544
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-08 Score=101.88 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH---HcCCCcEEEEcC-cccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL---ERGIPAISAVMG-TKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~---ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~ 540 (870)
.+.+|||||||+|.++..+++. +|+++|+++.++..|+..+.. ....+.+.++.+ ..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 4679999999999999888764 799999999988776533211 111233444443 33333 7899999862
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.++..++..+.|+|||||+|++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 345569999999999999999863
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=99.63 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=98.0
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccc---cCCC-Cccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESF---STYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f---~tyP-rtyDllHa~~lfS~~ 796 (870)
-..|||+|||.|.++.+|...+. +|+-+|.. ..+..+.+++.+.+++.-.+.+ +..+ .+||+|.+.++|.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh--
Confidence 36799999999999999999865 55666655 7888888887776666433444 3334 5699999988777
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh--------------------------------hhHHHHHHHHHcCCceEEE
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~--------------------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
..++..+|.++-|+|||||++||.+.. .....+..++..-.+++..
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 246778999999999999999998531 1468899999999999875
Q ss_pred eec-C------CCceEEEEEeC
Q 002884 845 AFS-K------DQEGVLSAQKG 859 (870)
Q Consensus 845 ~~~-~------~~e~iL~~~K~ 859 (870)
... . ....+++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEEC
T ss_pred EecCCCCCCCCceeEEEEeecC
Confidence 421 1 12457778774
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-08 Score=109.69 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCC-CCCceeEEEec-
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQF-PRNVFDLVHCA- 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPf-pd~SFDlV~Ss- 538 (870)
++.+|||+|||+|..+..|+. ..|+++|+++.++..+.. .+...|+.++.++. +...++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~-n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA-NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 678999999999998888775 279999999999988774 44455666554444 4455543 45789999972
Q ss_pred cc----ccccccC----------------hHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 539 RC----RVPWHID----------------GGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 539 ~~----alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
.| .+...++ ...+|.++.++|||||+|++++...
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 11 1211111 1368999999999999999986433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-08 Score=107.74 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC-CC---CCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL-QF---PRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L-Pf---pd~SFDlV~Ss~ 539 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+. .+...++..+.++.+ ...+ +. ...+||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4679999999999999888864 89999999999988874 445556654444444 3322 21 257899999963
Q ss_pred cccccc--------cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 540 CRVPWH--------IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 540 ~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
-.+... .....++.++.++|+|||+|+++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 221111 22357899999999999999998543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=104.06 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC-C-cEEEEcC-cccC-C-C--CCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI-P-AISAVMG-TKRL-Q-F--PRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl-~-~~~~v~d-ae~L-P-f--pd~SFDlV~ 536 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+. .+...++ . .+.++.+ ...+ + + ....||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999998864 79999999999988874 4455566 4 4444444 3322 2 1 146899999
Q ss_pred ecccccc--------cccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRVP--------WHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~alh--------w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+..-.+. .......++.++.++|+|||+|+++..+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9632111 1133468899999999999999998544
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-08 Score=102.77 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=97.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhc-ccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADH-LFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~-lfS~~~~r 799 (870)
..|||+|||.|.++..|...+. +|+-+|.. ..+..+.++.- +-+++.-.+.++. +.+||+|.+.+ +|......
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence 5799999999999999999864 55666654 67777777631 2333322233333 79999999987 88776544
Q ss_pred cChhhHHHhhhhcccCCcEEEEecC-------------------------------------------------------
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDE------------------------------------------------------- 824 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~------------------------------------------------------- 824 (870)
-.+..+|-++-|+|||||+|||.+.
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHE 207 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEE
Confidence 4566789999999999999999520
Q ss_pred ------hhhHHHHHHHHHcCCceEEEeec-CCCceEEEEEeC
Q 002884 825 ------PSAVTEVENFLKSLHWEILFAFS-KDQEGVLSAQKG 859 (870)
Q Consensus 825 ------~~~~~~~~~~~~~l~W~~~~~~~-~~~e~iL~~~K~ 859 (870)
......++.+++.-.+++..... .....+++++|+
T Consensus 208 ~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 249 (263)
T 3pfg_A 208 ESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecC
Confidence 01268899999999998876533 345679999996
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=100.45 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++.. +.. .|+++|+++.++..++. .+...++ ....++. +...+. +.||+|++..-
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~-n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-- 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKK-NIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP-- 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT--
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc--
Confidence 578999999999999988 754 89999999999988874 4445565 3444444 444444 78999999631
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ....++..+.++|+|||+|++..
T Consensus 268 ~---~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 268 K---FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp T---TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred H---hHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 12378999999999999999873
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=99.86 Aligned_cols=100 Identities=17% Similarity=0.071 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
.++.+|||||||+|.++..+.. ..++++||++.|+..+.. ++...+.+..+.+.+....|++. +||+|++.- ++|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk-~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPAE-AGDLALIFK-LLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCCC-BCSEEEEES-CHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCCC-CcchHHHHH-HHHH
Confidence 4578999999999999988764 499999999999988874 45556766666777766666554 899999874 3665
Q ss_pred ccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.++. ...+..+...|+++|+|+-.
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhhchhhHHHHHHHhcCCCEEEEc
Confidence 5433 33444899999999988865
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.1e-08 Score=106.48 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccC-CC---CCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRL-QF---PRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~L-Pf---pd~SFDlV~S 537 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+. .+...++. .+.++.+ ...+ +. ..+.||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5789999999999999998864 79999999999988874 44555664 4444444 3332 21 2568999999
Q ss_pred ccccccc--------ccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 538 ARCRVPW--------HIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 s~~alhw--------~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
..-.+.. ..+...++.++.++|+|||+|+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 6321111 123467899999999999999988543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=98.07 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCC-ceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRN-VFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~-SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...|+. .+.+..++.--+++.+ .||+|+.+.
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG- 92 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK-NVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG- 92 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE-
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC-
Confidence 4679999999999999988874 69999999999998874 55566765 3555554422234433 699988653
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.- .-...+|.++...|+|+|+|+++
T Consensus 93 -~Gg-~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 93 -MGG-RLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp -ECH-HHHHHHHHHTGGGCTTCCEEEEE
T ss_pred -CCh-HHHHHHHHHHHHHhCCCCEEEEE
Confidence 211 11367888999999999999998
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=112.91 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Ccc-cCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GTK-RLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-dae-~LPfpd~SFDlV~Ss~ 539 (870)
++.+|||+|||+|.++..++.. .|+++|+|+.++..++.+ +...++. .+.++. +.. .++...++||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N-~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERN-LRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 4779999999999999888754 599999999999998854 4445654 344444 433 3455568899999964
Q ss_pred ccc----------ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRV----------PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~al----------hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
-.+ ....+...++..+.++|+|||+|+++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 221 1112346789999999999999999853
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-07 Score=102.16 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc----CCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR----LQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~----LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++.++.++.+ ... +|+++++||+|+++
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 35679999999999999999875 89999999999998874 455567665555544 333 45667889999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. +... ...++..+. .++|+++++++
T Consensus 364 P---Pr~g-~~~~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 364 P---ARAG-AAGVMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp C---CTTC-CHHHHHHHH-HHCCSEEEEEE
T ss_pred C---CCcc-HHHHHHHHH-hcCCCeEEEEE
Confidence 4 2221 234555544 48999999998
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=100.72 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc---------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~ 536 (870)
.++.+|||+|||+|.++..+++ ..++|+|+++.++..|+.... ..|+...+...+... +.+...||+|+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEE
Confidence 3567999999999998876653 368999999999888875444 345544444444332 44567899999
Q ss_pred ecccccccccCh------------------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWHIDG------------------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~~D~------------------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++.- +++.... ..++..+.+.|+|||++++..+
T Consensus 207 ~NPP-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 207 SDLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp EECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCC-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9853 2222111 2579999999999999998853
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-08 Score=97.78 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=89.9
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCC-Cccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
.|||+|||.|.++.+|.+.+- .+|+-+|.. ..+..+.++ |+ +-+++.-.+.++ +| .+||+|.+.++|.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHh
Confidence 799999999999999988732 355556654 566666655 54 334443333333 44 8999999988887
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh------------------------------hhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
+.. +...+|-++-|+|||||.++|.+.. .....++.+++...++...
T Consensus 123 ~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 123 FWE---DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred hcc---CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 763 4677999999999999999997521 1236778888888887654
Q ss_pred eecCCCceEEEEEeC
Q 002884 845 AFSKDQEGVLSAQKG 859 (870)
Q Consensus 845 ~~~~~~e~iL~~~K~ 859 (870)
.........+++.|+
T Consensus 200 ~~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 200 IILGDEGFWIIISKT 214 (219)
T ss_dssp EEEETTEEEEEEBCC
T ss_pred EEecCCceEEEEecc
Confidence 433344445555553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-08 Score=95.68 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=94.8
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc--cceeccccccccCCCCccchhhhhcccccccC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
-..|||+|||.|.++.+|...+. +|+-+|.. ..+..+.++-- +-+++.-.+.+ +++.+||+|.+.++|.....
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF-EVPTSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC-CCCSCCSEEEEESCGGGSCH
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc-CCCCCeEEEEECcchhcCCh
Confidence 45799999999999999998864 56666654 67777766632 33444222232 33489999999888876543
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh----h---------------------------hHHHHHHHHHcCCceEEEeec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP----S---------------------------AVTEVENFLKSLHWEILFAFS 847 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~----~---------------------------~~~~~~~~~~~l~W~~~~~~~ 847 (870)
. ....+|.++-|+|||||+++|.+.. . ....++.+++...+++.....
T Consensus 122 ~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 122 D-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp H-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred H-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 1 1123899999999999999998632 0 236788899999998876655
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.+-.-++.++|+
T Consensus 201 ~~~~w~~~~~~~ 212 (220)
T 3hnr_A 201 NHFVWVMEATKQ 212 (220)
T ss_dssp SSSEEEEEEEEC
T ss_pred cceEEEEeehhh
Confidence 556667888774
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=102.82 Aligned_cols=95 Identities=22% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++...+...+...++. . .||+|++..- .
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~-n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPP---r 363 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARR-NVEINNVDAEFEVASDREVSV-K-GFDTVIVDPP---R 363 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCC---T
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCC---c
Confidence 4679999999999999999875 89999999999998874 444556663333344454432 2 8999999642 2
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..-...++..+ +.|+|||+++++
T Consensus 364 ~g~~~~~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 364 AGLHPRLVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp TCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred cchHHHHHHHH-HhcCCCcEEEEE
Confidence 11123455555 469999999998
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-08 Score=95.56 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=95.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhcccccccCCc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc 800 (870)
..|||+|||.|.++..|...+. .|+-+|.. ..+..+.++.- +.+++.-.+.++.-+.+||+|.+.++|.+.. +-
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~ 118 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG-PG 118 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-TT
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-HH
Confidence 5699999999999999998865 55566654 67777777731 3333332233433348999999988887654 23
Q ss_pred ChhhHHHhhhhcccCCcEEEEecCh----------------hhHHHHHHHHHcCCceEEEee--cCCCceEEEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDEP----------------SAVTEVENFLKSLHWEILFAF--SKDQEGVLSAQK 858 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~~----------------~~~~~~~~~~~~l~W~~~~~~--~~~~e~iL~~~K 858 (870)
.+..+|.++-|+|||||+++|.+.. .....++.++....|++.... ...+...|+..|
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~ 194 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEA 194 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhh
Confidence 5678999999999999999998632 236889999999999987552 224555665555
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-08 Score=98.56 Aligned_cols=94 Identities=18% Similarity=0.361 Sum_probs=70.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC--ccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG--LFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG--lig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..|||+|||.|.++..|.+.+. +|+-+|.. ..+..+.++- -+-+++.-.+.+ ..+.+||+|++.++|.+..
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-- 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID-- 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS--
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc--
Confidence 3599999999999999998754 45555654 6677776663 233444333343 3458999999999888765
Q ss_pred cChhhHHHhhh-hcccCCcEEEEec
Q 002884 800 CKLVPVMAEVD-RIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmD-RILRPgG~~iird 823 (870)
+...+|.|+- |+|||||+++|.+
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3578999999 9999999999986
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=99.26 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.+ .|+|+|+++.++..++... ...+.+.+.++. +...++++ +||+|+++.
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~-~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~ 114 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRC-LYEGYNNLEVYEGDAIKTVFP--KFDVCTANI 114 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEC----CCSSCCC--CCSEEEEEC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEECchhhCCcc--cCCEEEEcC
Confidence 45789999999999999999875 8999999999998887543 334554444444 44566654 799999974
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.1e-08 Score=92.35 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=94.5
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++.+|.+..- +|+-+|.. ..+..+.++ ..-+.-.+.. .++| .+||+|.+.++|....
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~--~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~-- 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK--FDSVITLSDP-KEIPDNSVDFILFANSFHDMD-- 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH--CTTSEEESSG-GGSCTTCEEEEEEESCSTTCS--
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh--CCCcEEEeCC-CCCCCCceEEEEEccchhccc--
Confidence 35799999999999999998862 77777765 777777777 1112212222 4555 7999999988887664
Q ss_pred cChhhHHHhhhhcccCCcEEEEecCh-------------hhHHHHHHHHHcCCceEEEe-ecCCCceEEEEEeCCCCCC
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDEP-------------SAVTEVENFLKSLHWEILFA-FSKDQEGVLSAQKGNWQPD 864 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~~-------------~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~~K~~w~~~ 864 (870)
+...+|.++-|+|||||++++.+.. .....++.++. .|++... .......+|++.|+-=++.
T Consensus 90 -~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (170)
T 3i9f_A 90 -DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSEGH 165 (170)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCCSC
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCCcc
Confidence 4678999999999999999998532 12567888887 8887544 3334567888887644443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=96.43 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc-ccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT-KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da-e~LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...|+. .+.+..++ .....+.+.||+|+...
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~-N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG- 98 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK-NVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG- 98 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE-
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccccccccCEEEEeC-
Confidence 4689999999999999998874 69999999999999885 44555654 34555443 33333444799987542
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.- .-...+|.+..+.|+++|+|+++.
T Consensus 99 -mGg-~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 99 -MGG-RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp -ECH-HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred -Cch-HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 211 113678888899999999999983
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=97.51 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCc-ccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGT-KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~da-e~LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...|+.. +.+..++ .....+...||+|++..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag- 98 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK-QVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG- 98 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE-
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEecchhhccCccccccEEEEeC-
Confidence 4689999999999999998874 69999999999999884 455566643 4455443 33333334699988643
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.- .-...+|.+..+.|+++|+|+++
T Consensus 99 -mGg-~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 99 -MGG-TLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp -ECH-HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred -Cch-HHHHHHHHHHHHHhCCCCEEEEE
Confidence 110 11367888899999999999998
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-08 Score=95.99 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=81.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
-..|||+|||.|.++..|...+. +|+-+|.. ..+..+.+ .|+ +-+++ |+. .++. +.+||+|.+.++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchh
Confidence 35799999999999999988864 45555543 45555443 344 33333 333 3333 7899999998888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh--------------hhHHHHHHHHHcCCceEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~--------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
..... -.+..+|.++-|+|||||+++|.+.. .....++.++.. |++...
T Consensus 108 ~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 108 MFLEA-KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp GGSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 76542 24667999999999999998876421 135778888887 887654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-07 Score=107.29 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC-CCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ-FPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP-fpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++. .+...|+.++.++.+ ...++ +.+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~-n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSE-NIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH-HHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 46789999999999888777652 79999999999888774 455567766555544 34443 335789999973
Q ss_pred c-c----ccc--------cccCh--------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 R-C----RVP--------WHIDG--------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~-~----alh--------w~~D~--------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. | .+. |..+. ..+|.++.++|||||+|++++..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 1 1 111 11111 26799999999999999998543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-07 Score=97.83 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-
Q 002884 440 GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA- 515 (870)
Q Consensus 440 ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~- 515 (870)
...+|..+-..-...+...+ .++.+|||+|||+|.|+..++.+ .|+++|++|..+..++. .+...++..
T Consensus 104 ~k~~f~~~~~~er~ri~~~~------~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~-N~~~N~v~~~ 176 (278)
T 3k6r_A 104 AKIMFSPANVKERVRMAKVA------KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDR 176 (278)
T ss_dssp TTSCCCGGGHHHHHHHHHHC------CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTT
T ss_pred cceEEcCCcHHHHHHHHHhc------CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHH-HHHHcCCCCc
Confidence 34455555543344455443 35889999999999998877643 79999999998887774 455566653
Q ss_pred EEEEc-CcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 516 ISAVM-GTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 516 ~~~v~-dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..+. |...++ +.+.||.|+++. + .....+|..+.++|||||++.+-
T Consensus 177 v~~~~~D~~~~~-~~~~~D~Vi~~~---p--~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 177 MSAYNMDNRDFP-GENIADRILMGY---V--VRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp EEEECSCTTTCC-CCSCEEEEEECC---C--SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCcHHHhc-cccCCCEEEECC---C--CcHHHHHHHHHHHcCCCCEEEEE
Confidence 44444 344444 357899999863 2 22346788889999999998764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-08 Score=96.97 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=91.5
Q ss_pred ccccccccccchhHHhhhcCCC---eEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCCCccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
-..|||+|||.|.++.+|.... . .|+-+|.. ..+..+.++ |+ +-++..-.+.++.-+.+||+|.+.+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKG---KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence 3569999999999999997653 2 33444443 455555444 43 3333322233332237999999998
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC-------------hhhHHHHHHHHHcCCceEEEe-ecCCCceEEEEE
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-------------PSAVTEVENFLKSLHWEILFA-FSKDQEGVLSAQ 857 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-------------~~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~~ 857 (870)
+|.... +...+|-++-|+|||||+++|.+. ......+..++....|++... .......+++++
T Consensus 115 ~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 191 (219)
T 3dh0_A 115 TFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAM 191 (219)
T ss_dssp CGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred hhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEE
Confidence 887764 467899999999999999999852 123688999999999997654 334456778888
Q ss_pred eC
Q 002884 858 KG 859 (870)
Q Consensus 858 K~ 859 (870)
|+
T Consensus 192 k~ 193 (219)
T 3dh0_A 192 IV 193 (219)
T ss_dssp CC
T ss_pred ec
Confidence 75
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=95.72 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=70.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCCCccchhhhhc-ccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYPRSYDLLHADH-LFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyPrtyDllHa~~-lfS 794 (870)
-..|||+|||.|.++..|...+. +|+-+|.. ..+..+.++ |+ +-+++.-.+.+ ++|.+||+|.+.+ +|.
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTTGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC-CccCCceEEEEcCcccc
Confidence 35799999999999999998864 45666654 666665554 32 33333222222 2458999999987 888
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+....-.+..+|.++-|+|||||.+|+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7643345678999999999999999984
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=98.50 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=75.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
....+|||||||+|-++..++.. .|+++|+++.|+..+.. ++...|+...+.+.+. ....+.+.||+|+++- +
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~~~~v~D~-~~~~p~~~~DvaL~lk-t 207 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPHRTNVADL-LEDRLDEPADVTLLLK-T 207 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCEEEEECCT-TTSCCCSCCSEEEETT-C
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeee-cccCCCCCcchHHHHH-H
Confidence 34789999999999999888553 89999999999988874 4455577755555553 3344567899999975 4
Q ss_pred cccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|+.++. ...+.++...|+|||+|+-.
T Consensus 208 i~~Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 208 LPCLETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred HHHhhhhhhHHHHHHHHHhCCCCEEEec
Confidence 7765443 33344999999999999865
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=102.25 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=79.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc-cceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||+|.++.+|...+. .|+-+|.. ..+..+.+ .|+ +-+++.-+..+..-+.+||+|.++..|...
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 4699999999999999998864 45555543 44444333 233 334443223322213799999998887653
Q ss_pred cC--CcChhhHHHhhhhcccCCcEEEEecCh--hhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 797 KN--RCKLVPVMAEVDRIVRPGGKLIVRDEP--SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 797 ~~--rc~~~~vl~EmDRILRPgG~~iird~~--~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.. .-.+..+|.++-|+|||||.++|.-.. .+...++..+.. +... .+.+-+||-+.|
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~----v~~l-~~~gF~Vl~a~~ 372 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA----FQTL-KVAEYKVLFAEK 372 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC----CEEE-EESSSEEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhcc----EEEE-eCCCEEEEEEEE
Confidence 32 123457899999999999999997433 333445554443 3333 334556666554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-07 Score=91.43 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=86.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHhhCccceeccccccccCC-CCccchhhhhcccccccCCc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTY-PRSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~ty-PrtyDllHa~~lfS~~~~rc 800 (870)
-..|||+|||.|.++..|. ..|..+-+.+. -+.+++.-.+.+ ++ +.+||+|.+.++|. . -
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~-~---~ 128 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL-------------DPRVTVCDMAQV-PLEDESVDVAVFCLSLM-G---T 128 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS-------------STTEEESCTTSC-SCCTTCEEEEEEESCCC-S---S
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------CceEEEeccccC-CCCCCCEeEEEEehhcc-c---c
Confidence 3579999999999999995 45555555544 122333222333 35 47999999988773 2 3
Q ss_pred ChhhHHHhhhhcccCCcEEEEecChh---hHHHHHHHHHcCCceEEEeec-CCCceEEEEEeC
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDEPS---AVTEVENFLKSLHWEILFAFS-KDQEGVLSAQKG 859 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~~~---~~~~~~~~~~~l~W~~~~~~~-~~~e~iL~~~K~ 859 (870)
....+|.++-|+|+|||++||.+... ....+..++....+++..... ...-.+++++|.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 56789999999999999999987554 468889999999998865433 234578888885
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=101.72 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCEEEEECCCCchhHHHHh-------------------cCCEEEEeCChhhHHHHHHHHHHH------------c--CCC
Q 002884 468 TRVSLDVGCGVASFGGYLF-------------------ERDVLTMSFAPKDEHDAQIQFALE------------R--GIP 514 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La-------------------~r~VtgVDiSp~ml~~A~vq~A~e------------r--gl~ 514 (870)
..+|+|+|||+|..+..+. +-.|..-|+..+|...-....... . +.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5789999999998776651 116788899888865544322210 0 001
Q ss_pred cEEEEcCc-ccCCCCCCceeEEEecccccccccC--------------------------------------hHHHHHHH
Q 002884 515 AISAVMGT-KRLQFPRNVFDLVHCARCRVPWHID--------------------------------------GGKLLLEL 555 (870)
Q Consensus 515 ~~~~v~da-e~LPfpd~SFDlV~Ss~~alhw~~D--------------------------------------~~~vL~Ei 555 (870)
....+.+. ..-.||+++||+|+|+. ++||..+ ...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223332 23458999999999996 5999863 23468888
Q ss_pred HhhcCCCcEEEEEE
Q 002884 556 NRVLRPGGYFVWSA 569 (870)
Q Consensus 556 ~RVLKPGG~Lv~S~ 569 (870)
+|.|+|||.|+++.
T Consensus 212 a~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 212 AAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEE
Confidence 99999999999983
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-08 Score=107.12 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=68.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
..|||+|||+|.++..|.+.+- +|+-+|-. .+|..+..+.-+-..+.-.|.++.-+.+||+|.|..+|-. .+
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~----~~ 113 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW----FD 113 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTT----CC
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhH----hh
Confidence 4699999999999999998864 45555544 5555554444455555556665433489999999877732 35
Q ss_pred hhhHHHhhhhcccCCcEEEEe
Q 002884 802 LVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~iir 822 (870)
....|.|+.|||||||.|++-
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 678999999999999999875
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.4e-08 Score=102.39 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=91.2
Q ss_pred cccccccccchhHHhhhc--CCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALK--DLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~--~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|||.|.++.+|+ ..+- .+|+-+|.. ..+..+.++ |+ +-+++.-...+ ++|.+||+|.+.++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-DTREGYDLLTSNGL 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-CCCSCEEEEECCSS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-CccCCeEEEEECCh
Confidence 569999999999999994 3322 244455543 555555443 44 33444322232 35699999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------------------------hhHHHHHH
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------------------------SAVTEVEN 833 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------------------------~~~~~~~~ 833 (870)
|-+....-....+|-++-|+|||||++||.+-. .....+..
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 877654434445899999999999999998711 23678889
Q ss_pred HHHcCCceEEEeecC--CCceEEEEEeC
Q 002884 834 FLKSLHWEILFAFSK--DQEGVLSAQKG 859 (870)
Q Consensus 834 ~~~~l~W~~~~~~~~--~~e~iL~~~K~ 859 (870)
+++.-.+++...... ..-..++++|+
T Consensus 277 ~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 277 QLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 999999998654322 23457888885
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-08 Score=95.41 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=89.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccce--eccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGI--YHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~--~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..|||+|||.|.++.+|...+. +|+-+|.. ..+..+.++|+..+ ++.-.+.+ .-+.+||+|.+.++|.+...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~- 122 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPD- 122 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCH-
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCH-
Confidence 4799999999999999988754 45555644 67777777775332 22222222 22489999999888876653
Q ss_pred cChhhHHHhhhhcccCCcEEEEecCh----------------------------------hhHHHHHHHHHcCCceEEEe
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDEP----------------------------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~~----------------------------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
-.+..+|.++-|+|||||.+++.+.. .....+..+++...|++...
T Consensus 123 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 202 (218)
T 3ou2_A 123 DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVD 202 (218)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEee
Confidence 22567999999999999999998531 13467888888888886654
Q ss_pred ecCCCceEEEEE
Q 002884 846 FSKDQEGVLSAQ 857 (870)
Q Consensus 846 ~~~~~e~iL~~~ 857 (870)
......-+.+++
T Consensus 203 ~~~~~~~~~~~~ 214 (218)
T 3ou2_A 203 EVHPGFLYATCR 214 (218)
T ss_dssp EEETTEEEEEEE
T ss_pred eccccceEeecC
Confidence 333333333333
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-07 Score=93.38 Aligned_cols=135 Identities=12% Similarity=0.148 Sum_probs=90.7
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----C-------ccceec-cccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----G-------LFGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----G-------lig~~h-~wce~f~tyPrtyDllH 788 (870)
-..|||+|||.|.++.+|.+..- ..+|+-+|.. ..+..+.++ | -+-+++ |+ +.....+.+||+|.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAAT 107 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEE
Confidence 35799999999999999988641 1245555544 566666554 2 233333 44 32232347999999
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh----------------------hHHHHH----HHHHcCCceE
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS----------------------AVTEVE----NFLKSLHWEI 842 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~----------------------~~~~~~----~~~~~l~W~~ 842 (870)
+.++|..... -.+..+|.++-|+|||||++|+..... ....++ .++.+-.+++
T Consensus 108 ~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLDE-NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCCH-HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 9988887642 234579999999999999888774332 123444 7888888888
Q ss_pred EEee-------cCCCceEEEEEeC
Q 002884 843 LFAF-------SKDQEGVLSAQKG 859 (870)
Q Consensus 843 ~~~~-------~~~~e~iL~~~K~ 859 (870)
.... ......|.||+|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 7651 1135789999985
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-08 Score=101.22 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=84.8
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccccCCC-CccchhhhhcccccccC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESFSTYP-RSYDLLHADHLFSQLKN 798 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f~tyP-rtyDllHa~~lfS~~~~ 798 (870)
-..|||+|||.|.++.+|.+.+. +|+-+|.. ..+..+.++ +.+++ |..+-..++| .+||+|.+.++|.+...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 35799999999999999988765 45556654 777777777 55554 3333333666 89999999988887652
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecChh-------------------hHHHHHHHHHcCCceEE
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEPS-------------------AVTEVENFLKSLHWEIL 843 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~~-------------------~~~~~~~~~~~l~W~~~ 843 (870)
-.+..+|.++-|+|||||+++|..... ....+..++....+++.
T Consensus 117 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 117 -ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp -GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 345789999999999999999985321 13566777777777654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-08 Score=101.84 Aligned_cols=97 Identities=10% Similarity=0.174 Sum_probs=70.8
Q ss_pred cccccccccchhHHhhhc-CCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALK-DLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~-~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|+++.+|+ ..+. +|+-+|.. ..+..+.++ |+..-++-.+..+..+|.+||+|++.++|.+.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~~ 142 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHF 142 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhhc
Confidence 469999999999999998 3454 45555544 666666655 55333333333334566999999999988876
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. -....+|-++-|+|||||.++|.+
T Consensus 143 ~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 143 GH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred Ch-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 42 356789999999999999999985
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=94.19 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=82.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccceecccccccc-CCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFS-TYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~-tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|.++.+|...+. .+|+-+|.. ..+..+.++ |+-. +.-.+..+. ..+.+||+|.++.++..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH-
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH-
Confidence 4699999999999999988754 345555654 555555554 5533 222222222 23589999999766643
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEEEeecCC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEILFAFSKD 849 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~~~~~~~ 849 (870)
+..+|.++-|+|||||++++.+ .......+..++....|++......+
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 186 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAG 186 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEET
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccC
Confidence 4678999999999999999975 33456788888888888886543333
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=98.62 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=82.0
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCCCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
-..|||+|||.|.++..|++.+- ..|+-+|.. ..+..+.++ |+ +-+++.-.+.++.-+.+||+|++.++|
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 35799999999999999998733 134444543 555555444 54 344443224444224899999999988
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------hhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
... ++..+|.++-|+|||||+++|.+.. .....+..++....+++..
T Consensus 125 ~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 125 YNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp GGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred eec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 765 5778999999999999999998632 1245677777777777654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-08 Score=93.92 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=83.5
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc----cceec-cccccccCCCCccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL----FGIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl----ig~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
-..|||+|||.|.++.+|...+. +|+-+|.. ..+..+.++ |+ +-+++ |+.+.+. +.+||+|.++.
T Consensus 53 ~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~ 127 (194)
T 1dus_A 53 DDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNP 127 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECC
Confidence 35799999999999999988743 45555543 555555544 54 33444 4544322 57999999977
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecChh-hHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS-AVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~-~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.|... .-.+..+|.++-|+|+|||.+++..... ....+...++..-+.+........-.+++++|
T Consensus 128 ~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 128 PIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred Ccccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcEEEEEEee
Confidence 66431 1245679999999999999999986543 23335555555534444443344455666655
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-07 Score=95.49 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=69.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhh-hcccccccC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHA-DHLFSQLKN 798 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa-~~lfS~~~~ 798 (870)
-..|||+|||.|.++..|.+... +|+-+|.. ..+..+.++. -+-+++.-.+.++ ++.+||+|.| .++|.+...
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFR-LGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC-CSSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc-cCCCCcEEEEcCchHhhcCC
Confidence 35799999999999999987743 45556654 6777776663 1333332223333 3789999994 557766544
Q ss_pred CcChhhHHHhhhhcccCCcEEEEec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.-.+..+|.++-|+|||||.++|.+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3456789999999999999999974
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-08 Score=97.40 Aligned_cols=99 Identities=15% Similarity=0.257 Sum_probs=74.1
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCCCccchhhhhccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.-..|||+|||.|.++.+|...+ .+|+-+|.. ..+..+.++. -+-+++.-.+.+. .+.+||+|.+.++|.+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 34579999999999999999885 367777765 6777766653 2344443333333 3589999999988887
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
....-.+..+|.++-|+|||||++||..
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 7654445678999999999999999975
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-08 Score=100.66 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=85.8
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCCCccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
-..|||+|||.|.++.+|+..+. ..|+-+|.. ..+..+.++- -+-+++.-.+.++.-+.+||+|.+.++|.+.
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 171 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence 46799999999999999987652 244555543 6677776663 3444443233333224799999998888766
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh----------------hhHHHHHHHHHcCCceEEEe
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~----------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
.. -.+..+|.++.|+|||||+++|.+.. .....++.+++...|++...
T Consensus 172 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 172 TD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 32 24667999999999999999998741 12478888888888887643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.5e-08 Score=99.47 Aligned_cols=114 Identities=8% Similarity=0.137 Sum_probs=78.7
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+.. +. +|+-+|.. ..+..+.+ .|+ +-+++.-.+.++. +.+||+|++.+++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~ 113 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGAT 113 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCG
T ss_pred CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCCh
Confidence 46999999999999999764 43 33444543 55555544 354 3444432233333 7899999997777
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------------hhHHHHHHHHHcCCceEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------------SAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------------~~~~~~~~~~~~l~W~~~ 843 (870)
-... +...+|-|+-|+|||||+++|.+.. .....+..++....++..
T Consensus 114 ~~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 114 WIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp GGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred HhcC---CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 5543 4678999999999999999998632 123667777877777653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-07 Score=99.38 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=72.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|...+. .|+-+|.. ..+..+.++ |+ +-+++.-.+.++.+ +.+||+|.+.++|
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4699999999999999998865 45555554 666666655 54 44555444455544 4899999999988
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.... +...+|.++-|+|||||+++|.+
T Consensus 147 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWVA---DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccc---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8764 45789999999999999999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=94.42 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=87.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-CccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-GLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-Glig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++..|++.+. +|+-+|.. ..+..+.++ ++--+..+.. .++ .+.+||+|.+.++|.... .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcC-H
Confidence 35799999999999999998865 55566654 677777777 4433333443 334 558999999988887654 1
Q ss_pred cChhhHHHhhhhcccCCcEEEEecCh---------------hhHHHHHHHHHcCC-ceEEEe
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDEP---------------SAVTEVENFLKSLH-WEILFA 845 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~~---------------~~~~~~~~~~~~l~-W~~~~~ 845 (870)
-.+..+|-++-|+|||||+++|.... .....++.++.... |++...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 24567999999999999999998432 24688899999888 887643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-07 Score=100.20 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L 525 (870)
..+.+.+.+. ..++.+|||+|||+|.++..+++ ..|+|+|+++.++..| ....+...+....
T Consensus 27 l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 27 VVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC
T ss_pred HHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhc
Confidence 3444554443 13456999999999999988875 3899999999876544 1223334444443
Q ss_pred CCCCCceeEEEeccccccccc---------Ch-------------------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 526 QFPRNVFDLVHCARCRVPWHI---------DG-------------------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~---------D~-------------------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ +.+.||+|+++.-...... +. ..++..+.++|+|||++++..+.
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 3 3568999999732111111 11 25688999999999999988543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-07 Score=96.07 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=60.6
Q ss_pred CCCCEEEEECC------CCch-hHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEE
Q 002884 466 KYTRVSLDVGC------GVAS-FGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGC------GtG~-~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV 535 (870)
.++.+|||||| |+|. +++.+.. ..|+|+|+++. + .+ ..+ ...+...++++ ++||+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~~--v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------SD--ADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------CS--SSEEEESCGGGCCCS-SCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------CC--CEEEEECccccCCcc-CcccEE
Confidence 46789999999 4465 2222322 47999999996 1 12 234 45556667665 679999
Q ss_pred Eecccccccc----------cC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWH----------ID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~----------~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+. ..++. .+ ...+|.++.|+|||||.|++..
T Consensus 128 vsn~-~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 128 ISDM-YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp EECC-CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcC-CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9973 22221 01 2478999999999999999974
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.5e-08 Score=101.12 Aligned_cols=98 Identities=8% Similarity=0.118 Sum_probs=71.1
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|+++..|++. +. +|+-+|.. ..+..+.++ |+.+-++-.+..+..++.+||+|.+.++|.+.
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF 150 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhc
Confidence 46999999999999999887 63 45555554 666666555 55433332222223348999999999988876
Q ss_pred cCC------cChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNR------CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~r------c~~~~vl~EmDRILRPgG~~iird 823 (870)
.+. -.+..+|-++-|+|||||.++|.+
T Consensus 151 ~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 151 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 432 345689999999999999999985
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-07 Score=95.41 Aligned_cols=120 Identities=11% Similarity=0.071 Sum_probs=82.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-----------------------------------c
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-----------------------------------L 766 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-----------------------------------l 766 (870)
..|||+|||.|.++..|...+. .+|+-+|.. ..+..+.++- .
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 5699999999999999988765 456666654 5555554331 0
Q ss_pred c-ceec-cccccccC-CC---CccchhhhhcccccccCC-cChhhHHHhhhhcccCCcEEEEecChh-------------
Q 002884 767 F-GIYH-DWCESFST-YP---RSYDLLHADHLFSQLKNR-CKLVPVMAEVDRIVRPGGKLIVRDEPS------------- 826 (870)
Q Consensus 767 i-g~~h-~wce~f~t-yP---rtyDllHa~~lfS~~~~r-c~~~~vl~EmDRILRPgG~~iird~~~------------- 826 (870)
+ .+++ |..+. .+ -+ .+||+|.+.++|...... -.+..+|-++-|+|||||+||+.+...
T Consensus 136 v~~~~~~d~~~~-~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 214 (265)
T 2i62_A 136 IKQVLKCDVTQS-QPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS 214 (265)
T ss_dssp EEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred heeEEEeeeccC-CCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence 3 3333 34332 23 23 799999998877643221 245679999999999999999986221
Q ss_pred ---hHHHHHHHHHcCCceEEEe
Q 002884 827 ---AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 827 ---~~~~~~~~~~~l~W~~~~~ 845 (870)
....+..++....+++...
T Consensus 215 ~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 215 LPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEE
Confidence 2458888898888887544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-07 Score=88.79 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=89.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceec-cccccccCCC-Cccchhhhh-cccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYH-DWCESFSTYP-RSYDLLHAD-HLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h-~wce~f~tyP-rtyDllHa~-~lfS~~ 796 (870)
-..|||+|||.|.++..|...+. +|+-+|.. ..+..+.++.- +.+++ |..+ + ++| .+||+|.+. .++.+.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-D-QISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-S-CCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-C-CCCCCceeEEEECCcHHhhc
Confidence 35799999999999999988764 45555554 55555555431 33333 3332 2 243 799999997 566554
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh---hhHHHHHHHHHcCCceEEEeecC---------CCceEEEEEeC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP---SAVTEVENFLKSLHWEILFAFSK---------DQEGVLSAQKG 859 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~---~~~~~~~~~~~~l~W~~~~~~~~---------~~e~iL~~~K~ 859 (870)
.. -....+|.++-|+|+|||.+|+.... .....+..++....+++...... .+--+++++|+
T Consensus 122 ~~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 AE-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred Ch-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 21 23467999999999999999997543 34678888888888888654221 23457777774
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.9e-08 Score=98.01 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=81.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|....-- .|+-+|.. ..+..+.++ |+ +-+++.-.+.++.-+.+||+|++.++|.
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 47999999999999999876310 45555544 555554443 55 3344432244432248999999998887
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------hhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
+. +...+|-++-|+|||||+++|.+.. .....+..++....+++..
T Consensus 126 ~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 126 NI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp CC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred hc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 65 5778999999999999999998631 1245677778888877654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-07 Score=92.59 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=72.1
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccccCCC-Cccchhhhhccccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESFSTYP-RSYDLLHADHLFSQLK 797 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f~tyP-rtyDllHa~~lfS~~~ 797 (870)
.-.+|||+|||.|.++.+|...+. +|+-+|.. ..+..+.++.. .+++ |..+...++| .+||+|.+.++|.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 346799999999999999998863 56666654 56666665543 3343 4444335565 8999999988887665
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEec
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++-|+|+|||++++..
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 35689999999999999999975
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-07 Score=92.62 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCCCccchhhhhc-cccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYPRSYDLLHADH-LFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyPrtyDllHa~~-lfS~ 795 (870)
..|||+|||.|.++..|... .+|+-+|.. ..+..+.++ |. +-+++.-...+ ++|.+||+|.+.+ +|.+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL-ELPEPVDAITILCDSLNY 109 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC-CCSSCEEEEEECTTGGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc-CCCCCcCEEEEeCCchhh
Confidence 57999999999999999887 356666654 666666554 21 33333222222 3468999999875 7776
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
....-.+..+|.++-|+|||||.+|+.
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 655456678999999999999999983
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-07 Score=96.38 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=86.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh--Cccceec-c--ccccccCCC-Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER--GLFGIYH-D--WCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR--Glig~~h-~--wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
+.|||+|||+|+|+..|+..+. -.|+-+|-. ++|...+.+ .++.+-. + ... ...+| .+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~-~~~l~~~~fD~v~~d~sf~- 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE-PVDFTEGLPSFASIDVSFI- 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC-GGGCTTCCCSEEEECCSSS-
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc-hhhCCCCCCCEEEEEeeHh-
Confidence 4699999999999999988764 245566654 788774432 1211111 1 111 12245 4599999887775
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecC----------------------hhhHHHHHHHHHcCCceEEEe-ec-----
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDE----------------------PSAVTEVENFLKSLHWEILFA-FS----- 847 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~----------------------~~~~~~~~~~~~~l~W~~~~~-~~----- 847 (870)
++..+|-|+-|+|||||.+|+-.. ...+..+...+....|.+... ++
T Consensus 163 -----sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~ 237 (291)
T 3hp7_A 163 -----SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGG 237 (291)
T ss_dssp -----CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCG
T ss_pred -----hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Confidence 357799999999999999988611 124678888999999998654 22
Q ss_pred -CCCceEEEEEeC
Q 002884 848 -KDQEGVLSAQKG 859 (870)
Q Consensus 848 -~~~e~iL~~~K~ 859 (870)
.+.|-++.++|.
T Consensus 238 ~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 238 HGNIEFLAHLEKT 250 (291)
T ss_dssp GGCCCEEEEEEEC
T ss_pred CcCHHHHHHhhhc
Confidence 245777777773
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.3e-07 Score=87.38 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Ccc-c-eec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLF-G-IYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gli-g-~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+.. +- ..|+-+|.. ..+..+.++ |+- . .++ +..+.+...+.+||+|.+.+.+
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 46999999999999999877 22 244555554 566666544 543 1 333 4555554444899999987666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~ 844 (870)
.. ..+|-++-|+|||||.+++.+. ......+..+++...+++..
T Consensus 105 ~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 105 TA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp TC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred cH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 43 5699999999999999999864 44566777788877776643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-07 Score=89.97 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=82.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCC-CCccchhhhh-ccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTY-PRSYDLLHAD-HLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~ty-PrtyDllHa~-~lf 793 (870)
..|||+|||.|.++..|++.+. .|+-+|.. ..+..+.++ |+ +-++++-.+.+..| +.+||+|.++ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 4599999999999999998843 55566654 566555443 55 55566656665555 4899999664 322
Q ss_pred cccc-----CCcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCC---ceEEEe-e--c-CCCceEEE
Q 002884 794 SQLK-----NRCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLH---WEILFA-F--S-KDQEGVLS 855 (870)
Q Consensus 794 S~~~-----~rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~---W~~~~~-~--~-~~~e~iL~ 855 (870)
.... ..-....+|.++-|+|||||.+++..- ......+...+..+. |.+... + . ..+..+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVM 180 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEEE
Confidence 2100 111233678999999999999998742 223456666676665 666433 1 2 23345555
Q ss_pred EEe
Q 002884 856 AQK 858 (870)
Q Consensus 856 ~~K 858 (870)
..|
T Consensus 181 i~~ 183 (185)
T 3mti_A 181 LEK 183 (185)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-07 Score=94.23 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=85.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-------cceeccccccccCCCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-------FGIYHDWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-------ig~~h~wce~f~tyPrtyDllHa~ 790 (870)
..|||+|||.|.++.+|+..+. +|+-+|.. ..+..+.++ |+ +-++..=.+.++.-+.+||+|.+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4699999999999999998865 55666654 566666553 33 233332223333224899999998
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecC-----------------------------------------hhhHH
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-----------------------------------------PSAVT 829 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-----------------------------------------~~~~~ 829 (870)
++|....+.-....+|-++-|+|||||.+|+.+. .....
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEK 188 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHH
Confidence 8888765433344799999999999999999753 12367
Q ss_pred HHHHHHHcCCceEEEe
Q 002884 830 EVENFLKSLHWEILFA 845 (870)
Q Consensus 830 ~~~~~~~~l~W~~~~~ 845 (870)
.++.+++...+++...
T Consensus 189 ~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 189 ELVFLLTDCRFEIDYF 204 (235)
T ss_dssp HHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888888887643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-07 Score=91.21 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=84.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+..+. .|+-+|.. ..+..+.++. + +-++. |+.+ +. .+.+||+|.+.++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 3799999999999999998765 45566654 5666665553 3 22333 3332 22 33799999998888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------hhHHHHHHHHHcCCceEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------~~~~~~~~~~~~l~W~~~~~ 845 (870)
.... .-....+|-++-|+|||||++|+.+-. .....+..++....|++...
T Consensus 143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 143 CAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp TTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 7654 235668999999999999999986421 13688999999999998654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.8e-08 Score=100.29 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=69.9
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCCC-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~tyP-rtyDllHa~~ 791 (870)
-..|||+|||.|.++..|... +. .|+-+|.. ..+..+.+ .|+ +-+++.-.+.+ ++| .+||+|++.+
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQD 158 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEecc
Confidence 357999999999999999876 54 45555544 55555544 454 34444323333 344 7999999988
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+|.+... ...+|-|+-|+|||||+++|.+.
T Consensus 159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 159 AFLHSPD---KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 8887654 67899999999999999999963
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=8.8e-07 Score=98.90 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=85.9
Q ss_pred CCEEEEECCCCchhHHHHhc---------------------CCEEEEeCChhhHHHHHHH-------HHHHcCC-CcEEE
Q 002884 468 TRVSLDVGCGVASFGGYLFE---------------------RDVLTMSFAPKDEHDAQIQ-------FALERGI-PAISA 518 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---------------------r~VtgVDiSp~ml~~A~vq-------~A~ergl-~~~~~ 518 (870)
..+|+|+||++|..+..+.. -.|..-|+..++...-... .....|. ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 57899999999976654432 1466778876655322211 1122221 11233
Q ss_pred EcCc----ccCCCCCCceeEEEecccccccccChHH------------------------H---------------HHHH
Q 002884 519 VMGT----KRLQFPRNVFDLVHCARCRVPWHIDGGK------------------------L---------------LLEL 555 (870)
Q Consensus 519 v~da----e~LPfpd~SFDlV~Ss~~alhw~~D~~~------------------------v---------------L~Ei 555 (870)
+.+. ....||+++||+|+|+. ++||..+.+. + |+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3331 34568999999999995 5999854421 1 5555
Q ss_pred HhhcCCCcEEEEEECCCcCch--h-----HHHHHHHhh-----------cccccccchhHHHHHHHHHhhc-cceEEE
Q 002884 556 NRVLRPGGYFVWSATPVYQKL--G-----EDVEIWNAM-----------SNLTVSMCWELVTIKMDKLNSA-GFAIYR 614 (870)
Q Consensus 556 ~RVLKPGG~Lv~S~~p~~~tL--~-----El~~~w~~~-----------~~la~~mcW~~va~~~~~L~da-GfaI~r 614 (870)
.|.|+|||.|+++ ..+.... . .+..+|..+ +.+..........+....+... +|.|.+
T Consensus 212 a~eL~pGG~mvl~-~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 212 SEELISRGRMLLT-FICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHEEEEEEEEEE-EECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHhccCCeEEEE-EecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 8999999999998 4444444 2 566677543 1122223333344555666665 466655
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-07 Score=97.79 Aligned_cols=95 Identities=9% Similarity=0.203 Sum_probs=69.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++.+|.+.+. .|+-+|.. ..+..+.++. -+.++..-.+.++ ++.+||+|++.++|-...
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVK-- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCS--
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCc--
Confidence 45799999999999999988654 44555544 6677776663 1333333233433 579999999988877654
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.|+-|+|||||++++..
T Consensus 132 -d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 132 -EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEe
Confidence 46789999999999999999974
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=96.69 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----------------CCEEEEeCChhhHHHHHHHHHHHcCC---CcEEEEcCcccC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----------------RDVLTMSFAPKDEHDAQIQFALERGI---PAISAVMGTKRL 525 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----------------r~VtgVDiSp~ml~~A~vq~A~ergl---~~~~~v~dae~L 525 (870)
..+.+|||.|||+|.++..+++ ..++|+|+++.++..|+.... .+|+ ...+...+....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTTCCSSCCSEEECCTTTS
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhCCCcCCCCEeeCCCCCC
Confidence 4567999999999998766542 479999999999888775443 3455 233444454444
Q ss_pred CCCCCceeEEEecccccc--cccC--------------hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 526 QFPRNVFDLVHCARCRVP--WHID--------------GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alh--w~~D--------------~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.. ..||+|+++.-..+ +... ...++..+.++|||||++++..+
T Consensus 249 ~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 249 EPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 433 48999999843221 1110 13789999999999999998743
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-07 Score=94.37 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=85.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc---cceeccccccccCCCCccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
..|||+|||.|.++.+|...+. +|+-+|.. ..+..+.+++. +-+++.-.+.++.-+.+||+|.+.++|.+..
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE- 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-
Confidence 4799999999999999998865 45556654 67777777742 2233322333332248999999988887663
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh----------------------hhHHHHHHHHHcCCceEEEe
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP----------------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~----------------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
+...+|.++-|+|||||+++|.+.. .....++.++....|++...
T Consensus 131 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 131 --EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 4567999999999999999998521 22467889999999987643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-07 Score=96.27 Aligned_cols=95 Identities=19% Similarity=0.367 Sum_probs=69.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC-Cccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP-RSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP-rtyDllHa~~lf 793 (870)
-..|||+|||.|.++.+|....- +|+-+|.. ..+..+.++ |+ +-+++.-.+.++ ++ .+||+|++.+++
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAA 97 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCG
T ss_pred CCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCch
Confidence 35799999999999999988753 55556654 556555443 54 334443334543 54 899999998877
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-+.. ++..+|.++-|+|||||+++|.+
T Consensus 98 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 98 HHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7654 46789999999999999999975
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.3e-07 Score=97.76 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC-C-CCC-------------
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL-Q-FPR------------- 529 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L-P-fpd------------- 529 (870)
+.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++.++.++.+ ...+ + +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~-n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY-NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHH-HHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 578999999999999999874 89999999999998874 455567766655554 3222 1 111
Q ss_pred -CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 -NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 -~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..||+|++..- . ..+..++.++|+|+|.+++.+
T Consensus 293 ~~~fD~Vv~dPP---r----~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 293 SYQCETIFVDPP---R----SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GCCEEEEEECCC---T----TCCCHHHHHHHTTSSEEEEEE
T ss_pred cCCCCEEEECcC---c----cccHHHHHHHHhCCCEEEEEE
Confidence 37999997531 1 134566778888988888763
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=93.95 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=72.9
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
++++.++++...+. ...++.+|||||||+|.|+.+++.. .|.++|+.-.+ ...... ....+...+.+..
T Consensus 57 SRaA~KL~ei~ek~-----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl-~~~pi~-~~~~g~~ii~~~~ 129 (277)
T 3evf_A 57 SRGTAKLRWFHERG-----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG-HEKPMN-VQSLGWNIITFKD 129 (277)
T ss_dssp STHHHHHHHHHHTT-----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-CCCCCC-CCBTTGGGEEEEC
T ss_pred ccHHHHHHHHHHhC-----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC-cccccc-cCcCCCCeEEEec
Confidence 44555555444442 1245779999999999999987754 67788887432 100000 0011223344444
Q ss_pred CcccCCCCCCceeEEEeccc---ccccccChH--HHHHHHHhhcCCC-cEEEEEE
Q 002884 521 GTKRLQFPRNVFDLVHCARC---RVPWHIDGG--KLLLELNRVLRPG-GYFVWSA 569 (870)
Q Consensus 521 dae~LPfpd~SFDlV~Ss~~---alhw~~D~~--~vL~Ei~RVLKPG-G~Lv~S~ 569 (870)
+.....++.+.||+|+|..+ ..+|.+... .+|..+.++|+|| |.|++..
T Consensus 130 ~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 130 KTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp SCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 44556778889999999642 222433322 4578889999999 9999974
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-07 Score=96.75 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=69.9
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC-Cccchhhhhcc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP-rtyDllHa~~l 792 (870)
.-..|||+|||.|.++..|....- .|+-+|.. ..+..+.++ |+ +-++..-.+.+ ++| .+||+|++..+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHIVTCRIA 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEEEEEESC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCCCEEEEEEhhh
Confidence 345799999999999999988753 56666654 666665554 54 33333223333 355 89999999877
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+-... +...+|.|+-|+|||||+|+|.+
T Consensus 113 l~~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 113 AHHFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 76654 46789999999999999999974
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-07 Score=95.73 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=83.3
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC----ccceec-cccccccCC-CCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG----LFGIYH-DWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h-~wce~f~ty-PrtyDllHa~~lf 793 (870)
-..|||+|||.|.++.+|+.. +. .|+-+|.. ..+..+.++. -+-+++ |+.+ + ++ +.+||+|++.++|
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-K-EFPENNFDLIYSRDAI 130 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-C-CCCTTCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-C-CCCCCcEEEEeHHHHH
Confidence 357999999999999999876 43 45555544 6777777764 233344 4433 3 45 4899999998888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------------hhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
.+... -+...+|-++-|+|||||+++|.+.. .....+..++....++...
T Consensus 131 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 131 LALSL-ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HhcCh-HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 77621 34668999999999999999998621 1246677777777776643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-07 Score=94.82 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=71.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc---cceeccccccccCCCCccchhhhhccccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
-..|||+|||.|.++.+|++.+.- +|+-+|.. ..+..+.++.- +-++..=.+.++.-+.+||+|.+.++|....
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 357999999999999999888541 45566654 67777777642 3333322234332248999999999887763
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEe
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
++..+|-++-|+|||||.+||.
T Consensus 123 ---~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 123 ---SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCCcEEEEE
Confidence 4678999999999999999997
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-07 Score=96.09 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=80.7
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceec-cccccccCCCCccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
-..|||+|||.|.++.+|+..+. +|+-+|.. ..+..+.++ |+ +-+++ |.. .+.. +.+||+|.+.++|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchh
Confidence 35699999999999999998865 56666654 555554443 54 22333 332 2222 78999999999887
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh--------------hhHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~--------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
+... -.+..+|-++-|+|||||+++|.... .....++.++.. |++...
T Consensus 196 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 196 FLNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 6532 35667999999999999997775321 114677888777 887654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.1e-07 Score=91.57 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=88.4
Q ss_pred ccccccccccchhHHhhhc--CCCeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccC---CCCccchhhh
Q 002884 722 VRNVMDMRAVYGGFAAALK--DLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFST---YPRSYDLLHA 789 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~--~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~t---yPrtyDllHa 789 (870)
-..|||+|||.|.++..|+ ..+. .|+-+|.. ..+.++.+ .|+ +-+++.-.+.+.. ++.+||+|.+
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3579999999999988887 3333 34455544 45555443 365 4555543344432 2579999998
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecC---hhhHHHHHHHHHcCCceEEEe--e-c---CCCceEEEEEeCC
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE---PSAVTEVENFLKSLHWEILFA--F-S---KDQEGVLSAQKGN 860 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~---~~~~~~~~~~~~~l~W~~~~~--~-~---~~~e~iL~~~K~~ 860 (870)
..+ ..+..++-++-|+|||||+|++.+. .+.+..+...++...+.+... . . +..-.+++++|.=
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecC
Confidence 653 4577899999999999999998753 334556777778888876432 1 1 1234577778865
Q ss_pred CCCCC
Q 002884 861 WQPDT 865 (870)
Q Consensus 861 w~~~~ 865 (870)
..|..
T Consensus 221 ~~~~~ 225 (240)
T 1xdz_A 221 NTPKK 225 (240)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 55543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-07 Score=94.86 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=84.4
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc------cceeccccccccCCCCccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL------FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl------ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
-..|||+|||.|.++.+|+.... ..|+-+|.. ..+..+.++.- +-+++.-.+.+..-+.+||+|.+.++|.
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46799999999999999988752 245555544 56666665531 2233322333333346899999988877
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChh---------------hHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS---------------AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~---------------~~~~~~~~~~~l~W~~~~~ 845 (870)
.... -.+..+|.++-|+|||||++||.+... ....++.++....+++...
T Consensus 158 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 6543 124579999999999999999976421 3688889999888887654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-07 Score=99.66 Aligned_cols=98 Identities=10% Similarity=0.145 Sum_probs=71.0
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|.++..|.+. +. .|+-+|.. ..+..+.++ |+..-+.-.+..+..+|.+||+|.+.++|.+.
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~~ 168 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 168 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHhc
Confidence 46999999999999999876 54 45555544 666666655 55332333333334457999999998888765
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.. -.+..+|-++-|+|||||.++|.+.
T Consensus 169 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 169 GH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 2467799999999999999999853
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=99.06 Aligned_cols=94 Identities=7% Similarity=0.060 Sum_probs=67.3
Q ss_pred cccccccccccchhHHhhhc---CCCeEEEEeccCCCC-CChhHHHhh-----Cc---cceeccccccccCCC------C
Q 002884 721 NVRNVMDMRAVYGGFAAALK---DLQVWVMNVVNVNSP-DTLPIIYER-----GL---FGIYHDWCESFSTYP------R 782 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~---~~~vwvmNvvp~~~~-~tl~~i~eR-----Gl---ig~~h~wce~f~tyP------r 782 (870)
.-..|||+|||.|.++..|+ .... +|+-+|.. ..+..+.++ |+ +-+++.-.+.++.-+ .
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 45679999999999999998 4443 45555554 666666665 32 333333233333222 6
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEE
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV 821 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii 821 (870)
+||+|++.++|... ++..+|.++-|+|||||+++|
T Consensus 113 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 99999998887765 678899999999999999998
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-07 Score=98.87 Aligned_cols=100 Identities=18% Similarity=0.298 Sum_probs=71.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----cc------ceec-ccccccc---CCCCccch
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LF------GIYH-DWCESFS---TYPRSYDL 786 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----li------g~~h-~wce~f~---tyPrtyDl 786 (870)
-..|||+|||.|.++..|++.+. +|+-+|.. ..+..+.++. .- -+.+ ++.+ ++ .-+.+||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD~ 133 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFDA 133 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeEE
Confidence 35799999999999999999876 67777765 6777776542 11 1122 2222 12 22489999
Q ss_pred hhhh-cccccccC----CcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 787 LHAD-HLFSQLKN----RCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 787 lHa~-~lfS~~~~----rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
|+|. .+|.+... .-.+..+|-++.|+|||||++||..+.
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9997 67776554 344778999999999999999998643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=91.75 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++.+|... +. +|+-+|.. ..+..+.++- -+-+++.-.+.+ +++.+||+|.+.++|..
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-DFEEKYDMVVSALSIHH 121 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-CCCSCEEEEEEESCGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-CCCCCceEEEEeCcccc
Confidence 57999999999999999876 33 44455543 5666666652 122333222222 23489999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecCh-----------------------------------------hhHHHHHHH
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------------------------------------SAVTEVENF 834 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------------------------------------~~~~~~~~~ 834 (870)
... -....+|-++-|+|||||+++|.+.. .....+..+
T Consensus 122 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 LED-EDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp SCH-HHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 632 12235899999999999999998621 112455667
Q ss_pred HHcCCceEEEe-ecCCCceEEEEEeCCCC
Q 002884 835 LKSLHWEILFA-FSKDQEGVLSAQKGNWQ 862 (870)
Q Consensus 835 ~~~l~W~~~~~-~~~~~e~iL~~~K~~w~ 862 (870)
++.-.++.... +..-.-.+++..|+-|.
T Consensus 201 l~~aGF~~v~~~~~~~~~~~~~~~~~~~~ 229 (234)
T 3dtn_A 201 LKEAGFRDVSCIYKYYQFAVMFGRKTEGH 229 (234)
T ss_dssp HHHTTCEEEEEEEEETTEEEEEEECC---
T ss_pred HHHcCCCceeeeeeecceeEEEEEecccc
Confidence 77778876533 33445677888777664
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-07 Score=97.43 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=68.3
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCCCccchhhhhcc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
-.+|||+|||+|.++..|++. +. .|+-+|.. ..+..+.++ |+ +-++++-++.+ ++|.+||+||+.++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHAF 98 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEESC
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-CcCCCeeEEEECCh
Confidence 457999999999999999876 23 33334433 444444443 21 33344323333 45789999999988
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
|.... +...+|.++-|+|||||++++.++.
T Consensus 99 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 87664 4568999999999999999988765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-07 Score=99.46 Aligned_cols=97 Identities=8% Similarity=0.177 Sum_probs=69.7
Q ss_pred ccccccccchhHHhhhcCC----CeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCC-Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyP-rtyDllHa~~lf 793 (870)
.|||+|||+|.++.+|+.. ++ .|+-+|.. .+|..+.+| |+..-+.-.|..+..+| ..||+|.+..++
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l 149 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 149 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence 5999999999999888753 43 45666755 777777665 55444444455555666 679999887666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.+... -....+|-||-|+|||||.|||.|.
T Consensus 150 ~~~~~-~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 150 QFLEP-SERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eecCc-hhHhHHHHHHHHHcCCCcEEEEEec
Confidence 55431 2334689999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=90.99 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=86.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCC-CCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTY-PRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~ty-PrtyDllHa~~l 792 (870)
..|||+|||.|.++..|+.++-. .|+-+|.. ..+..+.++ |+ +-+++ |+.+....+ +.+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 46999999999999999988543 66677764 555554433 55 45555 444443335 489999998755
Q ss_pred cccc-----------------cCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 793 FSQL-----------------KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 fS~~-----------------~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
|... ...+.+..+|.++-|+|||||.|++--+.+.+..+...++...|....
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 4322 112557789999999999999999987778888899999988888753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.5e-07 Score=93.92 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=87.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceec-cccccccCC-CCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYH-DWCESFSTY-PRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h-~wce~f~ty-PrtyDllHa~~lfS 794 (870)
..|||+|||.|.++.+|...+. .|+-+|.. ..+..+.++ |+ +-+++ ++.+. + +..||+|.++.++.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCCEEEEEEECCHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---CcCCCCCEEEECCcHH
Confidence 4699999999999999988765 56666653 566555553 55 44444 34332 4 37899999865543
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.+..++-++-|+|||||++++.+. ......+...++...|++......+.=..|+++|
T Consensus 196 ------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k 254 (254)
T 2nxc_A 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence 246789999999999999999853 3446888888998889886554444334555554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-07 Score=94.87 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=86.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-----------------------------------Cc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-----------------------------------GL 766 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-----------------------------------Gl 766 (870)
..|||+|||+|.++..++..++ -+|+-+|-. .+|..+.++ .-
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 4599999999999888887775 356666654 555544331 01
Q ss_pred cc-ee-cccccc--ccCC-CCccchhhhhcccccc-cCCcChhhHHHhhhhcccCCcEEEEecCh---------------
Q 002884 767 FG-IY-HDWCES--FSTY-PRSYDLLHADHLFSQL-KNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------- 825 (870)
Q Consensus 767 ig-~~-h~wce~--f~ty-PrtyDllHa~~lfS~~-~~rc~~~~vl~EmDRILRPgG~~iird~~--------------- 825 (870)
|. ++ .|..+. +... ..+||+|.|..+|... ...-++..+|-+|-|+|||||+|||++..
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~ 214 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 214 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence 11 22 244442 2222 3589999998877653 22234567999999999999999999521
Q ss_pred -hhHHHHHHHHHcCCceEEEeec-C----------CCceEEEEEeC
Q 002884 826 -SAVTEVENFLKSLHWEILFAFS-K----------DQEGVLSAQKG 859 (870)
Q Consensus 826 -~~~~~~~~~~~~l~W~~~~~~~-~----------~~e~iL~~~K~ 859 (870)
.....+..++..-..++..... . ..--+++|+|.
T Consensus 215 ~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 215 ALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 1356788888877777643311 0 12346788885
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=91.33 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. +|+++|+++.++..+...+. +.+.+ +...+...+++++..||+|+++.
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~---~~~~v~vi~gD~l~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANL 122 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH---HCSSEEEEESCTTTSCGGGSCCSEEEEEC
T ss_pred CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc---cCCCeEEEECchhhCCcccCCccEEEEeC
Confidence 45789999999999999999874 89999999999988875544 22333 44455677888888899999873
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.7e-07 Score=95.77 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=67.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++..|.+.+. .|+-+|-. ..+..+..+.-+-+++.-++.++ +| .+||+||+.++|.+..
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~-- 108 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHFS-- 108 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGCS--
T ss_pred CCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhcc--
Confidence 46799999999999999998754 44444443 44444334433444554445544 54 8999999999887663
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++-|+|| ||++++.+
T Consensus 109 -~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 -HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -CHHHHHHHHHHHhC-CcEEEEEE
Confidence 57789999999999 99887764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-08 Score=102.21 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCC-CceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPR-NVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd-~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..++.... +.+.+.++. +...++++. ++| .|+++.
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~-- 101 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY-KIVGNI-- 101 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE-EEEEEC--
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc-EEEEeC--
Confidence 35779999999999999988864 89999999998765542221 223344444 457777774 689 677762
Q ss_pred cccccC-------------hHHHH----HHHHhhcCCCcEEEEE
Q 002884 542 VPWHID-------------GGKLL----LELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D-------------~~~vL----~Ei~RVLKPGG~Lv~S 568 (870)
+|... ...+| ..+.|+|+|||.|++.
T Consensus 102 -Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 102 -PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp -CSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred -CccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 23221 12223 5577788888776654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.9e-07 Score=89.79 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=80.4
Q ss_pred ccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccC---CCCccchhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFST---YPRSYDLLHA 789 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~t---yPrtyDllHa 789 (870)
-..|||+|||.|.++.+|+.. +. +|+-+|.. ..+..+.+ .|+ +-+++ |+.+.+.. .+.+||+|.+
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPGV---SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTTE---EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCEEEEecCCHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 356999999999999999876 32 33333332 33333222 232 33333 55553332 2379999988
Q ss_pred hcccccccC-------------CcC----------hhhHHHhhhhcccCCcE-EEEecChhhHHHHHHHHH--cCCceEE
Q 002884 790 DHLFSQLKN-------------RCK----------LVPVMAEVDRIVRPGGK-LIVRDEPSAVTEVENFLK--SLHWEIL 843 (870)
Q Consensus 790 ~~lfS~~~~-------------rc~----------~~~vl~EmDRILRPgG~-~iird~~~~~~~~~~~~~--~l~W~~~ 843 (870)
+.-|..... +.. +..+|.++-|+|||||+ +++.-.......+..++. ...|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 644422110 011 16788999999999999 777766666788888888 7777543
Q ss_pred E--eecCCCceEEEEEeC
Q 002884 844 F--AFSKDQEGVLSAQKG 859 (870)
Q Consensus 844 ~--~~~~~~e~iL~~~K~ 859 (870)
. .+.....++++++|.
T Consensus 188 ~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEECTTSCEEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEc
Confidence 2 244456889998874
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-07 Score=94.14 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=69.3
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh--C---ccceeccccccccCCC-Cccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER--G---LFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR--G---lig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-..|||+|||.|.++..|.+.+. +|+-+|.. ..+..+.++ + -+-+++.-.+.++ +| .+||+|++.++|.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLWH 115 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCchh
Confidence 45799999999999999998864 45556654 677777665 1 1233332224433 54 7999999988877
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
... +...+|.++-|+|||||++++.
T Consensus 116 ~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 654 4678999999999999999986
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.3e-07 Score=89.51 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=86.8
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCC-CCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTY-PRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~ty-PrtyDllHa~~ 791 (870)
..|||+|||.|.++.+|++. +- -.|+-+|.. ..+..+.++ |+ +-+++.-.+.+..+ +.+||+|.++.
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 36999999999999998775 21 145556654 555555444 54 44555434445534 58999998875
Q ss_pred cc-ccc-----cCCcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCC---ceEEEe-e---cCCCce
Q 002884 792 LF-SQL-----KNRCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLH---WEILFA-F---SKDQEG 852 (870)
Q Consensus 792 lf-S~~-----~~rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~---W~~~~~-~---~~~~e~ 852 (870)
.| ... ...-....+|.++-|+|||||++++..- ......+...+..+. |.+... + ...+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~ 181 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPI 181 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCE
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCe
Confidence 44 110 0001223599999999999999998852 224566677777665 777544 1 123567
Q ss_pred EEEEEeCC
Q 002884 853 VLSAQKGN 860 (870)
Q Consensus 853 iL~~~K~~ 860 (870)
+++.+|..
T Consensus 182 ~~~~~~~~ 189 (197)
T 3eey_A 182 LVCIEKIS 189 (197)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 77777753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-07 Score=90.34 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=83.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCC-Cccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
..|||+|||.|.++..|...+.- +|+-+|.. ..+..+.++. -+-+++.-...+ ++| .+||+|.+.++|...
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCCCCcccEEEECcchhhh
Confidence 46999999999999999887531 44555544 5555555542 233333222333 454 799999988887654
Q ss_pred cC------------CcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHH--HcCCceEEEeecCC--CceEEEEEe
Q 002884 797 KN------------RCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFL--KSLHWEILFAFSKD--QEGVLSAQK 858 (870)
Q Consensus 797 ~~------------rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~--~~l~W~~~~~~~~~--~e~iL~~~K 858 (870)
.. ...+..+|.++-|+|||||.+|+.+.... ...+.++ ....|......-.+ .-.+.+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHK 197 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEEecCcceEEEEEEEe
Confidence 31 12456899999999999999999986442 2233444 33468765432222 223566665
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=90.00 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCC-CceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQFPR-NVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd-~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+.+ .|+|+|+++.++..++.... ..+...++ .+...+++++ ..| .|+++
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV---DHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT---TCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhc---cCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 45789999999999999999874 89999999998877664332 12334444 4557788874 456 46665
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-07 Score=95.86 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c-cceec-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L-FGIYH-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l-ig~~h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++.+|++... -+|+-++.+ ..+..+.+++ + +-+++ +|-+-...+| .+||.|..+-+++
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 3599999999999999988753 233334433 6677766553 2 22333 5655556776 7999998776666
Q ss_pred cccC--CcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKN--RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~--rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.+.. .-....+|-|+-|||||||.|+|-.
T Consensus 140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5433 2345678999999999999999863
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-07 Score=96.30 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=67.6
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCC-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyP-rtyDllHa~~ 791 (870)
-..|||+|||.|.++..|+.. +. +|+-+|.. ..+..+.++ |+ +-+++.-.+.+ ++| .+||+|++.+
T Consensus 62 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 62 GDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-PFEDASFDAVWALE 137 (273)
T ss_dssp TCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCTTCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-CCCCCCccEEEEec
Confidence 357999999999999999764 43 44444543 555555444 65 33343222332 354 7999999988
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+|.+..+ ...+|-++-|+|||||.++|.+
T Consensus 138 ~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMPD---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 8876643 5789999999999999999986
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.8e-07 Score=93.27 Aligned_cols=132 Identities=14% Similarity=0.235 Sum_probs=89.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+.. +- .+|+-+|.. ..+.++.++ |+ +-+++ |+.+.+. +.+||+|.++--|
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 46999999999999999743 32 145556654 556555544 54 44444 5655432 5789999887333
Q ss_pred ccc------------cCC----------cChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE--EeecCC
Q 002884 794 SQL------------KNR----------CKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL--FAFSKD 849 (870)
Q Consensus 794 S~~------------~~r----------c~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~--~~~~~~ 849 (870)
... ..+ -.+..+|-++-|+|+|||++++.........+..+++...|... ..+...
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g 266 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGD 266 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 211 110 12357888999999999999998877777888888888878642 224556
Q ss_pred CceEEEEEe
Q 002884 850 QEGVLSAQK 858 (870)
Q Consensus 850 ~e~iL~~~K 858 (870)
.+++++++|
T Consensus 267 ~~r~~~~~~ 275 (276)
T 2b3t_A 267 NERVTLGRY 275 (276)
T ss_dssp SEEEEEEEC
T ss_pred CCcEEEEEE
Confidence 788988875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-07 Score=90.41 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=67.8
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCC-CccchhhhhcccccccC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKN 798 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~ 798 (870)
-.+|||+|||.|.++..| .. -+|+-+|.. ..+..+.++. -+.+++.-.+.++ +| .+||+|.+.++|.+..
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP-FPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC-SCSSCEEEEEEESCTTTCS-
T ss_pred CCeEEEECCCCCHhHHhC-CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC-CCCCcEEEEEEcChhhhcC-
Confidence 357999999999999999 22 134455554 6666777663 2333443333433 44 7999999988887654
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecC
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+...+|.++-|+|||||.+||.+.
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEec
Confidence 567899999999999999999863
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-07 Score=89.18 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=78.7
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|+... - ..|+-+|.. ..+..+.++ |+ +-+++ |+.+.+. ...+||+|-+++.+
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPN--GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFIGGSG 118 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTT--SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEECCCC
Confidence 469999999999999998763 1 134445543 555555443 54 33333 3333332 22679999886655
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~ 844 (870)
. .+..+|-++-|+|||||.+++... ......+..+++...|++..
T Consensus 119 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 119 G------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp T------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 3 567899999999999999999854 46678888889999986543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-07 Score=94.23 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=67.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c-cceec-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L-FGIYH-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l-ig~~h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||+|.++.+|...+. -.|+-+|.. ..+..+.++. . +-+++ |+.+-..++| .+||+|.++ .|+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d-~~~ 138 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYD-TYP 138 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEEC-CCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEEC-Ccc
Confidence 4699999999999999988754 256667765 7777776654 1 33444 3433334565 899999883 222
Q ss_pred c-cc--CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 795 Q-LK--NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 795 ~-~~--~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. .. ..-.+..+|-|+-|+|||||.|++.+.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 1 11 112234679999999999999998753
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-07 Score=92.28 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=68.9
Q ss_pred ccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhhhccccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
-..|||+|||.|.++.+|.+. +. .|+-+|.. ..+..+.++. -+-+++.-.+.++ .+.+||+|++.++|....
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 109 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVP 109 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGST
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCC
Confidence 357999999999999999865 32 33334443 6677776662 1233333334444 458999999988887653
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+...+|.++-|+|||||+++|...
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 110 ---DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp ---THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 467899999999999999999853
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-07 Score=94.97 Aligned_cols=95 Identities=15% Similarity=0.298 Sum_probs=67.4
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|... +. .|+-+|.. ..+..+.++ |+ +-++..-.+.++.-+.+||+|++..+|
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 56999999999999999876 33 34444443 555555544 54 333332223333334899999998888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.... +...+|-++-|+|||||+++|.+
T Consensus 116 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 116 EHLQ---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7665 35689999999999999999975
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=89.26 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=80.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cce-----ecccc-ccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGI-----YHDWC-ESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~-----~h~wc-e~f~tyPrtyDllHa~~lfS 794 (870)
+.|||+|||+|+|+..|++.+.. .|+-+|.. .+|.....+.- ++. +...+ +.+.. .-||.+.++-+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 46999999999999999988642 56667754 77777555421 111 11112 22222 0123333333443
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec-------------------Ch---hhHHHHHHHHHcCCceEEEee-c----
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD-------------------EP---SAVTEVENFLKSLHWEILFAF-S---- 847 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird-------------------~~---~~~~~~~~~~~~l~W~~~~~~-~---- 847 (870)
. +..+|-|+-|+|||||+|++.- +. ..+..+..++....|++.... +
T Consensus 115 ~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g 188 (232)
T 3opn_A 115 S------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG 188 (232)
T ss_dssp C------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB
T ss_pred h------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC
Confidence 2 3679999999999999999861 10 235678888899999886542 1
Q ss_pred --CCCceEEEEEeC
Q 002884 848 --KDQEGVLSAQKG 859 (870)
Q Consensus 848 --~~~e~iL~~~K~ 859 (870)
.+-|.+|.++|.
T Consensus 189 ~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 189 GAGNVEFLVHLLKD 202 (232)
T ss_dssp TTTBCCEEEEEEES
T ss_pred CCCCHHHHHHHhhc
Confidence 235678888773
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-06 Score=88.06 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=87.3
Q ss_pred ccccccccc-chhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc-cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAV-YGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag-~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+||| .|.++.+|+... ..+|+-+|.. ..+..+.+ .|+ +-+++.-...+..+| .+||+|-++-.|.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 569999999 999999988762 1245555544 45554443 354 444443223455665 8999998875543
Q ss_pred ccc----------------CCcChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCceEEEeecCC---CceE
Q 002884 795 QLK----------------NRCKLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWEILFAFSKD---QEGV 853 (870)
Q Consensus 795 ~~~----------------~rc~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~~~~~~~~~---~e~i 853 (870)
... ....+..+|.++-|+|||||++++-- .......+...++...|.+....-.. --.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~ 214 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRWRHS 214 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-CEEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeEEEE
Confidence 221 11123678999999999999999853 34567888899999999886542222 2346
Q ss_pred EEEEe
Q 002884 854 LSAQK 858 (870)
Q Consensus 854 L~~~K 858 (870)
|+.+|
T Consensus 215 l~f~~ 219 (230)
T 3evz_A 215 LIFFK 219 (230)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66655
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.1e-07 Score=89.43 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=80.6
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC----Cccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP----RSYD 785 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP----rtyD 785 (870)
-.+|||+|||.|+++.+|+.. +. .|+-+|.. ..+..+.+ .|+ +-+++ |..+.+..++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 467999999999999999876 33 34455543 45544443 365 33444 3444333333 5799
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh------------HHHHHH----HHHcCCceEEEee---
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA------------VTEVEN----FLKSLHWEILFAF--- 846 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~------------~~~~~~----~~~~l~W~~~~~~--- 846 (870)
+|.+++... ....+|-++-|+|||||++|+.+.... ...++. +...-+|.+.+.-
T Consensus 136 ~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 209 (223)
T 3duw_A 136 FIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVG 209 (223)
T ss_dssp EEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred EEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccC
Confidence 998765432 345689999999999999998754321 123333 3334456655432
Q ss_pred cCCCceEEEEEeC
Q 002884 847 SKDQEGVLSAQKG 859 (870)
Q Consensus 847 ~~~~e~iL~~~K~ 859 (870)
.....+++++++.
T Consensus 210 ~~~~dG~~~~~~~ 222 (223)
T 3duw_A 210 SKGYDGFIMAVVK 222 (223)
T ss_dssp TTEEEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 2346788888863
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=88.38 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=80.2
Q ss_pred ccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh----Cc-------cceec-cccccccCCCCccchh
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER----GL-------FGIYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR----Gl-------ig~~h-~wce~f~tyPrtyDll 787 (870)
-..|||+|||.|.++.+|++.. . .+|+-+|.. ..+..+.++ |+ +-+++ |+ +....-+.+||+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 3579999999999999998763 1 144455543 566666554 22 23333 33 2222223799999
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh----------------------HHHHH----HHHHcCCce
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------------------VTEVE----NFLKSLHWE 841 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------------------~~~~~----~~~~~l~W~ 841 (870)
.+.++|..... -.+..+|-++-|+|||||.+|+.+.... ...++ .++.+-.++
T Consensus 107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~ 185 (217)
T 3jwh_A 107 TVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYN 185 (217)
T ss_dssp EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEE
T ss_pred eeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCce
Confidence 99988887632 3456799999999999999998865422 23334 777777887
Q ss_pred EEEe
Q 002884 842 ILFA 845 (870)
Q Consensus 842 ~~~~ 845 (870)
+...
T Consensus 186 v~~~ 189 (217)
T 3jwh_A 186 VQFQ 189 (217)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-07 Score=91.56 Aligned_cols=97 Identities=13% Similarity=0.209 Sum_probs=69.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc---cceeccccccccCCCCccchhhhhccccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
-..|||+|||.|.++.+|...+.- +|+-+|.. ..+..+.++.- +-+++.-.+.++.-+.+||+|.+.++|....
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 457999999999999999887541 34445544 66666666642 3334432333332248999999988877654
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEec
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
++..+|.++-|+|||||.+||..
T Consensus 122 ---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 122 ---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 46789999999999999999975
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.8e-06 Score=81.52 Aligned_cols=108 Identities=8% Similarity=0.100 Sum_probs=79.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCCC-Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTYP-RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~tyP-rtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|..... +|+-+|.. ..+..+.++ |+ +-+++ |+.+ .+| .+||+|.++++
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC-
T ss_pred CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc-
Confidence 4699999999999999988433 44555543 555555444 44 33333 4444 344 68999999776
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
..+..+|.++-|+ |||.+++.+ .......+...++...|++...
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 4677899999999 999999987 5566788889999999988764
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-07 Score=87.90 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=79.0
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCC-Cccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
.|||+|||.|.++.+|...+. +|+-+|.. ..+..+.++ |+ +-+++.-.+.++ +| .+||+|.+. |.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEE--hhcC
Confidence 799999999999999999865 66667765 666666555 43 333333233333 44 799999883 3332
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC-----------------hhhHHHHHHHHHcCCceEEEe
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE-----------------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~-----------------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
..-.+..+|.++-|+|||||.+++.+. ......++.++. .|++...
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 223466899999999999999999842 122578888888 7887543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=91.14 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc------------------------------------------CCEEEEeCChhhHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------------------------------------------RDVLTMSFAPKDEHDA 503 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------------------------------------------r~VtgVDiSp~ml~~A 503 (870)
.++..|||++||+|.++..++. ..|+|+|+++.|+..|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 4568999999999988755542 1399999999999998
Q ss_pred HHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccccccccc------ChHHHHHHHHhhcCC--CcEEEEE
Q 002884 504 QIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARCRVPWHI------DGGKLLLELNRVLRP--GGYFVWS 568 (870)
Q Consensus 504 ~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~------D~~~vL~Ei~RVLKP--GG~Lv~S 568 (870)
+. .+...|+. ..+...+...++.+ .+||+|+|+. +|.. +...+..++.++||+ ||.+++.
T Consensus 280 r~-Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NP---PYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 280 KQ-NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANP---PYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL 349 (393)
T ss_dssp HH-HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECC---CCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HH-HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECC---CCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 84 55556664 34455566777765 4899999984 3432 224556666677766 8877765
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=88.75 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=81.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++..|... +-+|.. ..+..+.++++- ++..-.+.++ ++ .+||+|.+.++|....
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~-~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVF-VLKGTAENLP-LKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCE-EEECBTTBCC-SCTTCEEEEEEESCGGGSS--
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCE-EEEcccccCC-CCCCCeeEEEEcchHhhcc--
Confidence 357999999999999999887 233433 667777777543 3332233333 44 7999999988887653
Q ss_pred cChhhHHHhhhhcccCCcEEEEecCh------------------------hhHHHHHHHHHcCCceEEEe
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDEP------------------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~~------------------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
+...+|.++-|+|+|||++++.+.. .....+..++....+++...
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 4578999999999999999998421 13577888888888887543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.6e-07 Score=85.56 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=78.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhcc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
-.+|||+|||.|.++..|.... ..|+-+|.. ..+..+.+ .|+ +-+++ |+.+.+.. ..+||+|.+.+.
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEECCc
Confidence 3579999999999999998876 345555543 45555444 343 33333 34332221 148999988766
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEE
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~ 844 (870)
+. .+..+|.++-|+|+|||.+++.+. ......+..+++...|++..
T Consensus 110 ~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 110 GG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp TT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred hH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 53 357899999999999999999864 45567788888887775543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.3e-07 Score=88.40 Aligned_cols=124 Identities=9% Similarity=0.083 Sum_probs=81.0
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|... +- .+|+-+|.. ..+..+.+ .|+ +-+++ |+.+ +. -+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 46999999999999998754 21 134444443 44444443 355 33444 3332 22 1378999988543
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe------ecCCCceEEEEEeC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA------FSKDQEGVLSAQKG 859 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~~~K~ 859 (870)
..+..+|.++-|+|+|||++++.........++.+++ .|+.... +......+++++|.
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3467899999999999999999976666677777766 7876431 11234567777763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-07 Score=103.83 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=91.0
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccc----cccccCCC-Cccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDW----CESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~w----ce~f~tyP-rtyDllHa~~lfS~ 795 (870)
-..|||+|||.|.++.+|.+.+. +|+-+|-. +.+..+.++|+-.....+ .+.+ +++ .+||+|.+.++|.+
T Consensus 108 ~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l-~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 108 DPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-RRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHH-HHHHCCEEEEEEESCGGG
T ss_pred CCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhc-ccCCCCEEEEEECChHHh
Confidence 35799999999999999998876 66777766 888899999765443222 2222 343 89999999999988
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecCh--------------------hhHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~~--------------------~~~~~~~~~~~~l~W~~~~~ 845 (870)
.. ++..+|-++-|+|||||+++|..+. .....++.++.+..+++...
T Consensus 184 ~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 184 IP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp CT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred cC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 75 5788999999999999999998532 11468888999988887544
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=85.83 Aligned_cols=104 Identities=7% Similarity=-0.030 Sum_probs=69.1
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCC---CceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPR---NVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd---~SFDlV~ 536 (870)
.++.+|||+|||+|..+..|+. ..|+++|+++.++..++. .+...|+.++.++. +...++... ..||.|+
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT-LLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4678999999999998887765 279999999999888774 44556766554444 445554322 5799999
Q ss_pred ec-----ccccc------cc-----cCh-------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CA-----RCRVP------WH-----IDG-------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss-----~~alh------w~-----~D~-------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+. ...+. |. .+. ..+|..+.++|+ ||+|++++..
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 62 11111 11 111 245777778887 9999998543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.6e-06 Score=92.18 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc------------------------------------------CCEEEEeCChhhHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------------------------------------------RDVLTMSFAPKDEHDA 503 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------------------------------------------r~VtgVDiSp~ml~~A 503 (870)
.++.+|||+|||+|.++..++. ..|+|+|+++.++..|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4578999999999988766542 2599999999999998
Q ss_pred HHHHHHHcCCC-cE-EEEcCcccCCCCCCceeEEEeccccccccc------ChHHHHHHHHhhcCC--CcEEEEE
Q 002884 504 QIQFALERGIP-AI-SAVMGTKRLQFPRNVFDLVHCARCRVPWHI------DGGKLLLELNRVLRP--GGYFVWS 568 (870)
Q Consensus 504 ~vq~A~ergl~-~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~------D~~~vL~Ei~RVLKP--GG~Lv~S 568 (870)
+. .+...|+. .+ +...+...++.+ ..||+|+|+. +|.. +...++.++.++||+ ||.+++.
T Consensus 274 r~-Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NP---Pyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 274 RE-NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNP---PYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLI 343 (385)
T ss_dssp HH-HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECC---CCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred HH-HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECC---CCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 84 45555664 34 444455666654 5899999985 3432 234567777778877 7777765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=91.01 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=76.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh------------------Cccc---------------
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER------------------GLFG--------------- 768 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR------------------Glig--------------- 768 (870)
..|||+|||.|.++..+...+.. .|+-+|-. .+|..+.++ .+.|
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCCC--eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 56999999999965544433221 45555544 555544331 0111
Q ss_pred ---eec-ccccccc----CCC-CccchhhhhcccccccCC-cChhhHHHhhhhcccCCcEEEEecC--------------
Q 002884 769 ---IYH-DWCESFS----TYP-RSYDLLHADHLFSQLKNR-CKLVPVMAEVDRIVRPGGKLIVRDE-------------- 824 (870)
Q Consensus 769 ---~~h-~wce~f~----tyP-rtyDllHa~~lfS~~~~r-c~~~~vl~EmDRILRPgG~~iird~-------------- 824 (870)
+++ |..+..+ .+| .+||+|.+..+|...... -++..+|-||-|+|||||+|+|.+.
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 222 4443222 243 679999998887764332 2567899999999999999999731
Q ss_pred --hhhHHHHHHHHHcCCceEEE
Q 002884 825 --PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 825 --~~~~~~~~~~~~~l~W~~~~ 844 (870)
......+..++..-.+++..
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEE
Confidence 12367888888888887653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.6e-07 Score=92.15 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=71.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++..|.+.+. +|+-+|.. ..+..+.++..--++..-.+.++ +| .+||+|.+.+++-.+..
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS-
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCC-CCCCCEEEEEEcchhhhccc-
Confidence 45799999999999999998864 55666654 77777777764223332233333 54 79999998765544432
Q ss_pred cChhhHHHhhhhcccCCcEEEEecCh
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
++..+|.++-|+|||||.+++....
T Consensus 130 -~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 -NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 2778999999999999999998543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-06 Score=87.24 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=82.9
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Ccc---ceec-cccccccCCC--Cccch
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GLF---GIYH-DWCESFSTYP--RSYDL 786 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gli---g~~h-~wce~f~tyP--rtyDl 786 (870)
.-++|||+|||.|.++.+|+.. +. .|+-+|.. ..+..+.++ |+- -+++ |..+.+...+ .+||+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 3468999999999999999876 32 34445543 555555544 653 3333 4444444444 39999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh------------HHHHHH----HHHcCCceEEEee---c
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA------------VTEVEN----FLKSLHWEILFAF---S 847 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~------------~~~~~~----~~~~l~W~~~~~~---~ 847 (870)
|.+++-. -....+|-++-|+|||||++|+.+.... ...++. +...-+|...+.. .
T Consensus 140 V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~ 213 (248)
T 3tfw_A 140 IFIDADK------PNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGT 213 (248)
T ss_dssp EEECSCG------GGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECST
T ss_pred EEECCch------HHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCC
Confidence 9875521 2345689999999999999998754321 223333 3444566665431 1
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
....++++++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 345889999985
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-07 Score=95.57 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=67.1
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----C-----ccceeccccccccCCCCccchhhh-hcc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----G-----LFGIYHDWCESFSTYPRSYDLLHA-DHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----G-----lig~~h~wce~f~tyPrtyDllHa-~~l 792 (870)
.|||+|||.|.++.+|.+.+. +|+-+|.. ..+..+.++ | -+-++..-.+.++ ++.+||+|.+ ..+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-LDKRFGTVVISSGS 160 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-CSCCEEEEEECHHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-cCCCcCEEEECCcc
Confidence 699999999999999999864 55666654 666666655 2 2444443333333 3799998875 344
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+... ..-.+..+|-++-|+|||||.|||..
T Consensus 161 ~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 161 INEL-DEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HTTS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccC-CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4432 22335689999999999999999984
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-06 Score=87.94 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=80.1
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCC-----Ccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYP-----RSY 784 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyP-----rty 784 (870)
-.+|||+|||.|.++.+|+.. +. .|+-+|.. ..+..+.++ |+ +-+++ |..+.+..++ .+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 457999999999999999875 32 34444443 445444433 55 33444 4444444444 789
Q ss_pred chhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh------------hHHHHHHHH----HcCCceEEEeecC
Q 002884 785 DLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS------------AVTEVENFL----KSLHWEILFAFSK 848 (870)
Q Consensus 785 DllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~------------~~~~~~~~~----~~l~W~~~~~~~~ 848 (870)
|+|.+++. .-....+|-++-|+|||||++|+.|... ....++.+. ..-+|...+. .
T Consensus 142 D~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p 213 (225)
T 3tr6_A 142 DLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI--P 213 (225)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE--C
T ss_pred cEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE--E
Confidence 99986543 2235568899999999999999986431 122333333 3445665543 2
Q ss_pred CCceEEEEEeC
Q 002884 849 DQEGVLSAQKG 859 (870)
Q Consensus 849 ~~e~iL~~~K~ 859 (870)
-..++++++|.
T Consensus 214 ~~dG~~~~~k~ 224 (225)
T 3tr6_A 214 IGDGLTLARKK 224 (225)
T ss_dssp STTCEEEEEEC
T ss_pred cCCccEEEEEC
Confidence 35678888884
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-06 Score=93.35 Aligned_cols=134 Identities=12% Similarity=0.193 Sum_probs=88.7
Q ss_pred cccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHh----hCc---ccee-ccccccccCCCCccch
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYE----RGL---FGIY-HDWCESFSTYPRSYDL 786 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~e----RGl---ig~~-h~wce~f~tyPrtyDl 786 (870)
..|.....|||+|||.|.++.+|.+. ++-+. -+|.+..+..+.+ .|+ +-+. +|.. .++|..||+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~p~~~D~ 238 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGT---VLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF---DPLPAGAGG 238 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCCCSCSE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEE---EecCHHHHHHHHHhhhhcCcCcCeEEecCCCC---CCCCCCCcE
Confidence 45677789999999999999999763 33222 1233444544443 355 3332 2443 456668999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------------hhHHHHHHHHHcCCceEEE
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------------~~~~~~~~~~~~l~W~~~~ 844 (870)
|.+.+++-.+.+. ....+|-++-|+|||||+++|.|.. .....++.+++.-.++...
T Consensus 239 v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 239 YVLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred EEEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 9998888765431 2457999999999999999998642 1145677777777787654
Q ss_pred ee-cCCCceEEEEEe
Q 002884 845 AF-SKDQEGVLSAQK 858 (870)
Q Consensus 845 ~~-~~~~e~iL~~~K 858 (870)
.. ... ..|+.|+|
T Consensus 318 ~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 318 AHPISY-VSIVEMTA 331 (332)
T ss_dssp EEECSS-SEEEEEEE
T ss_pred EEECCC-cEEEEEee
Confidence 32 223 66777765
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-07 Score=92.57 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=79.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-Cc--------------cceeccccccccCCC----C
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-GL--------------FGIYHDWCESFSTYP----R 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-Gl--------------ig~~h~wce~f~tyP----r 782 (870)
..|||+|||.|.++..|++++. .|+-+|.. ..|..+.+| ++ ..-+.-.|..+..+| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 4599999999999999998875 67777765 788888776 21 011111233333333 6
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcE-EEEe-cCh----------hhHHHHHHHHHcCCceEEEe
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGK-LIVR-DEP----------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~-~iir-d~~----------~~~~~~~~~~~~l~W~~~~~ 845 (870)
+||+|-+.++|..... .....+|-||-|+|||||. +++. +-. ...+.++.++.. .|++...
T Consensus 101 ~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp SEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 8999988777765432 3445689999999999998 3333 210 125778888887 7877543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-06 Score=90.32 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=87.9
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHH----hhCc--cceeccccccccC---CCCccchhhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIY----ERGL--FGIYHDWCESFST---YPRSYDLLHAD 790 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~----eRGl--ig~~h~wce~f~t---yPrtyDllHa~ 790 (870)
-..|||+|||.|.+|..|+.. +- ..|+-+|.. ..+.++. .-|+ +-++|.-.+.+.. ++.+||+|-+.
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 357999999999998887643 21 133444543 4444433 3366 4555644454443 34799999874
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecC---hhhHHHHHHHHHcCCceEEEe--e----cCCCceEEEEEeCCC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE---PSAVTEVENFLKSLHWEILFA--F----SKDQEGVLSAQKGNW 861 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~---~~~~~~~~~~~~~l~W~~~~~--~----~~~~e~iL~~~K~~w 861 (870)
.+ ..+..++-++-|+|||||.|++-.. .+.+..+...++.+.|.+... . .+..-.+++.+|.-.
T Consensus 159 a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~ 231 (249)
T 3g89_A 159 AV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAP 231 (249)
T ss_dssp SS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred Cc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCC
Confidence 33 3567899999999999999987643 455666777788888887533 1 112335677787666
Q ss_pred CCCCC
Q 002884 862 QPDTY 866 (870)
Q Consensus 862 ~~~~~ 866 (870)
+|...
T Consensus 232 t~~~y 236 (249)
T 3g89_A 232 TPPAY 236 (249)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 66543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.1e-07 Score=95.11 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=80.0
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCcc---ceeccccccccCCC-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGLF---GIYHDWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGli---g~~h~wce~f~tyP-rtyDllHa~~ 791 (870)
-..|||+|||.|.++..|++. +. .|+-+|.. ..+..+.+ .|+- -+++.-.+.+ ++| .+||+|.+.+
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTASWNNE 193 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEEES
T ss_pred CCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeEEEECC
Confidence 457999999999999999876 43 34445543 55555544 4543 3344222333 355 8999999988
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecCh----h-------------------hHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----S-------------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----~-------------------~~~~~~~~~~~l~W~~~~ 844 (870)
+|-.. +...+|.++-|+|||||.+++.+.. . ....+..+++.-.+++..
T Consensus 194 ~l~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~ 265 (312)
T 3vc1_A 194 STMYV----DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHT 265 (312)
T ss_dssp CGGGS----CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEE
T ss_pred chhhC----CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEE
Confidence 88765 2788999999999999999988521 0 245667777777777643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-06 Score=89.49 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=77.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceec-cccccccCC-CCccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYH-DWCESFSTY-PRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h-~wce~f~ty-PrtyDllHa~~lfS~~~~ 798 (870)
..|||+|||.|.++.+|...+. .|+-+|.. ..+..+.++.- +-+++ |+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 4699999999999999998864 56666654 77777777732 33333 565554422 4799999884
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
-....+|.++-|+|||||.++..........+...+....+...
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 24667999999999999999954333344566666776666543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=93.19 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=91.2
Q ss_pred ccccc-ccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHh----hCccc---e-eccccccccCCCCccc
Q 002884 717 INWSN-VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYE----RGLFG---I-YHDWCESFSTYPRSYD 785 (870)
Q Consensus 717 i~W~~-~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~e----RGlig---~-~h~wce~f~tyPrtyD 785 (870)
+.|.. .+.|||+|||.|.++.+|.+. ++-+. -+|.+..+..+.+ .|+-. + .+|..+.....|..||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQ---IWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEE---EEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEE---EEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 34555 788999999999999999764 33222 2233445554443 35432 2 2344443222578899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------------hhHHHHHHHHHcC
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------------SAVTEVENFLKSL 838 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------------~~~~~~~~~~~~l 838 (870)
+|.+.++|..+.. -....+|-++-|+|||||.++|.|.. .....++.++..-
T Consensus 251 ~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 251 VVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred EEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 9999888876643 12457999999999999999997521 1134567777777
Q ss_pred CceEEEeecCCCceEEEEEeC
Q 002884 839 HWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 839 ~W~~~~~~~~~~e~iL~~~K~ 859 (870)
.+++... ......+++++|+
T Consensus 330 Gf~~~~~-~~g~~~l~~a~kp 349 (352)
T 3mcz_A 330 GLAVGER-SIGRYTLLIGQRS 349 (352)
T ss_dssp TCEEEEE-EETTEEEEEEECC
T ss_pred CCceeee-ccCceEEEEEecC
Confidence 8877642 3345778999985
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=88.47 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc------------------------------------------CCEEEEeCChhhHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------------------------------------------RDVLTMSFAPKDEHDA 503 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------------------------------------------r~VtgVDiSp~ml~~A 503 (870)
.++..|||.+||+|.++...+. ..|+|+|+++.|+..|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 4578999999999988765542 1399999999999998
Q ss_pred HHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEecccccccc------cChHHHHHHHHhhcCC--CcEEEEEE
Q 002884 504 QIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARCRVPWH------IDGGKLLLELNRVLRP--GGYFVWSA 569 (870)
Q Consensus 504 ~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~------~D~~~vL~Ei~RVLKP--GG~Lv~S~ 569 (870)
+. .+...|+. ..+...+...++.+. .||+|+|+. +|. .+...++.++.++||+ ||.+++.+
T Consensus 273 r~-Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NP---PYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 273 RK-NAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNP---PYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HH-HHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECC---CCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HH-HHHHcCCCCceEEEECChHHCCccC-CcCEEEECC---chhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 84 55566765 334445567777654 899999984 343 2235667777778877 88877763
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=85.85 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCC-ceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN-VFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~-SFDlV~Ss~~al 542 (870)
.++ +|||||||+|.++..|+++ .|+++|+++.|+..++.... +....+...|...+++++. .||.|+++ +
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~~~~~~~~~iv~N---l 118 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWEEVPQGSLLVAN---L 118 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCGGGSCTTEEEEEE---E
T ss_pred CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCChhhccCccEEEec---C
Confidence 356 9999999999999999876 89999999999887764432 2223444455677777643 68999997 4
Q ss_pred ccccC
Q 002884 543 PWHID 547 (870)
Q Consensus 543 hw~~D 547 (870)
+|...
T Consensus 119 Py~is 123 (271)
T 3fut_A 119 PYHIA 123 (271)
T ss_dssp CSSCC
T ss_pred ccccc
Confidence 55543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.7e-06 Score=85.50 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC----CceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR----NVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd----~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+++ +|+++|+++.|+..++..... .....+...+...+++++ ..|| |+++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence 45789999999999999999886 899999999998887644332 222334445566776643 5688 6666
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-07 Score=95.52 Aligned_cols=96 Identities=11% Similarity=0.255 Sum_probs=65.4
Q ss_pred cccccccccchhHHhh----hcC--CCeEEEEeccCCCC-CChhHHHhh-----Cccceeccc----ccccc-----CC-
Q 002884 723 RNVMDMRAVYGGFAAA----LKD--LQVWVMNVVNVNSP-DTLPIIYER-----GLFGIYHDW----CESFS-----TY- 780 (870)
Q Consensus 723 RnvmDm~ag~Ggfaaa----L~~--~~vwvmNvvp~~~~-~tl~~i~eR-----Glig~~h~w----ce~f~-----ty- 780 (870)
..|||+|||.|.++.. |.. .++ ...++-+|.. .+|..+.+| |+-.+--.| .+.+. +|
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 3699999999987643 332 234 2244666755 777777765 443221122 22333 24
Q ss_pred CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 781 PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 781 PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+.+||+|+|..+|-... ++...|-||-|+|||||+|+|.
T Consensus 133 ~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 48999999988887665 4678999999999999999986
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=4.9e-07 Score=94.19 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=68.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccC-CCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFST-YPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~t-yPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|...+. .+|+-+|.. ..+..+.++ |+ +-+++.-++.++. -+.+||+|.+.++|
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 5699999999999999887653 245555544 555555554 33 3444433333322 24799999998777
Q ss_pred ccc-cCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 794 SQL-KNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 794 S~~-~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
... .+.-.+..+|.++-|+|||||++||..+.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 431 22234567999999999999999998643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.8e-07 Score=88.38 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=65.6
Q ss_pred cccccccccchhH-HhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGF-AAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~Ggf-aaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.+ .+.|...+. +|+-+|.. ..+..+.++ |. +-+++.-.+.+ ++| .+||+|.+.+++.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-PFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-CSCTTCEEEEEECSCGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-CCCCCceeEEEEcChHH
Confidence 5799999999998 455555554 45556654 555555443 32 33344323333 354 8999999988776
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.. .-.+..+|-++-|+|||||++++.+
T Consensus 101 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 552 2356789999999999999999985
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.6e-07 Score=98.28 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=82.8
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh---------C-----ccceecccccccc-----C
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER---------G-----LFGIYHDWCESFS-----T 779 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR---------G-----lig~~h~wce~f~-----t 779 (870)
..|||+|||.|.++..|++. +. .|+-+|.. ..+..+.++ | -+-+++.-.+.+. +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46999999999999888764 22 44445544 667776665 5 2344443333331 5
Q ss_pred CC-CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------------------hhHHHHHHHH
Q 002884 780 YP-RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------------------SAVTEVENFL 835 (870)
Q Consensus 780 yP-rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------------------~~~~~~~~~~ 835 (870)
+| .+||+|++.++|.... +...+|.++-|+|||||+|+|.+.. .....+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 55 7999999999888765 3678999999999999999998521 2237788888
Q ss_pred HcCCceEE
Q 002884 836 KSLHWEIL 843 (870)
Q Consensus 836 ~~l~W~~~ 843 (870)
..-.++..
T Consensus 239 ~~aGF~~v 246 (383)
T 4fsd_A 239 AEAGFRDV 246 (383)
T ss_dssp HHTTCCCE
T ss_pred HHCCCceE
Confidence 88888644
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-06 Score=85.96 Aligned_cols=129 Identities=15% Similarity=0.271 Sum_probs=80.4
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceec-ccccccc-CCCCccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFS-TYPRSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~-tyPrtyDllHa~~ 791 (870)
-++|||+|||.|.++.+|+...- ...|+-+|.. ..+..+.+ .|+ +-+++ |..+.+. ..+.+||+|.+++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 46799999999999999988310 1244555543 44444433 354 44554 4444444 4468999998753
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------------hhHHHHHHHH----HcCCceEEEeecCCC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------------SAVTEVENFL----KSLHWEILFAFSKDQ 850 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------------~~~~~~~~~~----~~l~W~~~~~~~~~~ 850 (870)
- .-....+|-++-|+|||||++|+.+.. .....++.+. ..-+|...+. .-.
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~~ 222 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL--NID 222 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE--CST
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE--EcC
Confidence 2 224567899999999999999994311 1122333333 3445665443 235
Q ss_pred ceEEEEEeC
Q 002884 851 EGVLSAQKG 859 (870)
Q Consensus 851 e~iL~~~K~ 859 (870)
.++++++|+
T Consensus 223 dG~~i~~k~ 231 (232)
T 3ntv_A 223 DGLAISIKG 231 (232)
T ss_dssp TCEEEEEEC
T ss_pred CceEEEEEC
Confidence 788988884
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-06 Score=93.24 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchhHHHHhc--------------------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc---Cc-c
Q 002884 468 TRVSLDVGCGVASFGGYLFE--------------------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM---GT-K 523 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~--------------------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---da-e 523 (870)
.-+|+|+||++|..+..+.. -.|...|+..+|..........-..-....++. +. .
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 46799999999965543321 167888999998876553221100000123333 22 3
Q ss_pred cCCCCCCceeEEEecccccccccChH---------------------------------HHHHHHHhhcCCCcEEEEE
Q 002884 524 RLQFPRNVFDLVHCARCRVPWHIDGG---------------------------------KLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 524 ~LPfpd~SFDlV~Ss~~alhw~~D~~---------------------------------~vL~Ei~RVLKPGG~Lv~S 568 (870)
...||+++||+|+|+. ++||..+.+ .+|+-..+.|+|||.|+++
T Consensus 132 ~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4578999999999995 599985422 2488889999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-06 Score=96.22 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=68.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHH----HhhCc---cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPII----YERGL---FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i----~eRGl---ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++.+|++.+. ..|+-+|....+..+ ...|+ +-+++.-.+.+ ++| .+||+|.+..++.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccc
Confidence 5699999999999999998854 133334433344443 34466 45555444444 566 8999999977666
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+...-.+..+|.+++|+|||||++|+.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 5544456778999999999999999755
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.7e-06 Score=80.28 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=85.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccccCCC-CccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
..|||+|||.|.++.+|+... +|+-+|.. ..+.. ..+ +-+++ |+.+ .++ .+||+|-++..|-.....
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~~d~~~---~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVRADLLC---SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEECSTTT---TBCGGGCSEEEECCCCBTTCCC
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEECChhh---hcccCCCCEEEECCCCccCCcc
Confidence 369999999999999999987 67777765 55444 222 33333 4444 344 899999997666532221
Q ss_pred ------cChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEEee--cCCCceEEEEEe
Q 002884 800 ------CKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILFAF--SKDQEGVLSAQK 858 (870)
Q Consensus 800 ------c~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~~~--~~~~e~iL~~~K 858 (870)
.....++.++-|.| |||.+++... ......+..+++...|+..... ....+++++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 22345788888888 9999999753 4557889999999999886542 334566665543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-06 Score=91.62 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=79.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccc---eeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig---~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|+|+.+|+..+-- .|+-+|.. ..+..+.++ |+-. +++.-+..+.. +.+||+|.++..+
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV- 202 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch-
Confidence 46999999999999999876431 35555654 555554443 6643 34433333333 6899999875442
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh-------hhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-------SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~-------~~~~~~~~~~~~l~W~~~~ 844 (870)
....+|-++-|+|||||++++.+.. .....+...+....|++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 3356888999999999999996533 5578889999999999876
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-06 Score=86.50 Aligned_cols=116 Identities=9% Similarity=0.145 Sum_probs=77.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-CC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-YP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-yP-rtyDllHa~~ 791 (870)
..|||+|||.|.++.+|+.. +- .+|+-+|.. ..+..+.+ .|+ +-+++ |..+ +.. +| .+||+|++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~- 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN- 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE-
T ss_pred ceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE-
Confidence 35999999999999999765 22 266677765 56655544 365 34444 3433 432 44 789988763
Q ss_pred cccc-------ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEE
Q 002884 792 LFSQ-------LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 792 lfS~-------~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~ 843 (870)
|+. .+.|-....+|-++-|+|+|||.|+|. |.......+..++....|...
T Consensus 116 -~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 -FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp -SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred -CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 321 112222467899999999999999986 566666677777777677654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-06 Score=88.71 Aligned_cols=133 Identities=12% Similarity=0.201 Sum_probs=88.3
Q ss_pred ccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh----Cc---ccee-ccccccccCCCCccchh
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER----GL---FGIY-HDWCESFSTYPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR----Gl---ig~~-h~wce~f~tyPrtyDll 787 (870)
.|.. ..|||+|||.|.++.+|.+. +. .++-+|.+..+..+.++ |+ +-++ +|..+ ++|..||+|
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 237 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIY 237 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEE
Confidence 4555 88999999999999999764 22 23333445566555543 33 3333 35544 467889999
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-------------------------hhHHHHHHHHHcCCceE
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-------------------------SAVTEVENFLKSLHWEI 842 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-------------------------~~~~~~~~~~~~l~W~~ 842 (870)
.+.++|-.+.. -....+|-++-|+|||||+++|.|.. .....++.+++.-.++.
T Consensus 238 ~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 316 (334)
T 2ip2_A 238 LLSRIIGDLDE-AASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAV 316 (334)
T ss_dssp EEESCGGGCCH-HHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EEchhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCce
Confidence 99888875532 12347999999999999999998532 01345667777777776
Q ss_pred EEe-ecCCCceEEEEEe
Q 002884 843 LFA-FSKDQEGVLSAQK 858 (870)
Q Consensus 843 ~~~-~~~~~e~iL~~~K 858 (870)
... .......++.++|
T Consensus 317 ~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 317 ERIVDLPMETRMIVAAR 333 (334)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred eEEEECCCCCEEEEEEe
Confidence 433 2234466787776
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-06 Score=84.97 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=78.0
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-CC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-YP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-yP-rtyDllHa~ 790 (870)
..|||+|||.|.|+.+|+.. +. +|+-+|.. ..+..+.+ .|+ +-+++ |+.+ +.. +| .+||+|.++
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CeEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 45999999999999998765 22 45555544 55555444 354 33444 3443 442 44 789999886
Q ss_pred ccccccc-----CCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEE
Q 002884 791 HLFSQLK-----NRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 791 ~lfS~~~-----~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~ 844 (870)
......+ .|-....+|-++-|+|+|||.|+|. |.......+..++....|.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 3221111 1122357999999999999999997 4556667777788777887654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-06 Score=86.83 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=81.0
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC-----Cc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP-----RS 783 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP-----rt 783 (870)
.-++|||+|||.|.++.+|+.. +. .|+-+|.. ..+.++.+ .|+ +-+++ |..+.+..++ .+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 3568999999999999999873 32 34444443 45555443 365 44444 4445455555 69
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh--hHHHHHHHHHcCCceEEEee-----cCCCceEEEE
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS--AVTEVENFLKSLHWEILFAF-----SKDQEGVLSA 856 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~--~~~~~~~~~~~l~W~~~~~~-----~~~~e~iL~~ 856 (870)
||+|.+++....+. ....++.++ |+|||||.+|+.|-.. ....++.+...-+|+..... .....++.++
T Consensus 135 fD~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~ 210 (221)
T 3u81_A 135 LDMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKA 210 (221)
T ss_dssp CSEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEE
Confidence 99998876555432 122466677 9999999999986431 12233333334456655431 1235688888
Q ss_pred EeC
Q 002884 857 QKG 859 (870)
Q Consensus 857 ~K~ 859 (870)
++.
T Consensus 211 ~~~ 213 (221)
T 3u81_A 211 IYQ 213 (221)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.04 E-value=9.8e-07 Score=88.20 Aligned_cols=97 Identities=25% Similarity=0.367 Sum_probs=67.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----C-ccceec-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----G-LFGIYH-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----G-lig~~h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|...+. +|+-+|.. ..+..+.++ | -+-+++ |..+ ++ +| .+||+|.+.+++.
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LS-FEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CC-SCTTCEEEEEEESCGG
T ss_pred CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CC-CCCCcEEEEEEcCchH
Confidence 5799999999999999988754 55555544 555555544 2 233333 3333 23 44 7999999987744
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.... -....+|.++-|+|||||.+++.+..
T Consensus 115 ~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFEP-LELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCH-HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3321 24567999999999999999998754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-06 Score=91.48 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-c-------------------cceeccccccccCCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-L-------------------FGIYHDWCESFSTYP 781 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-l-------------------ig~~h~wce~f~tyP 781 (870)
..|||+|||.|.++..|++.+. .|+-+|.. ..+..+.++- + ..-+.-.|..+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4699999999999999999986 67788866 7777776542 1 011121222232222
Q ss_pred ----CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEE-ec---------Ch--hhHHHHHHHHHcCCceEEEe
Q 002884 782 ----RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV-RD---------EP--SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 782 ----rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii-rd---------~~--~~~~~~~~~~~~l~W~~~~~ 845 (870)
.+||+|-+.++|..+. ......++-+|-|+|||||.|+| +- +. ...+.+..++.. .|++...
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 7999999888777653 24566799999999999999963 31 11 235788888877 4877543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.8e-07 Score=95.25 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=66.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Ccc--------ceecccc------cccc-CCC-
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLF--------GIYHDWC------ESFS-TYP- 781 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gli--------g~~h~wc------e~f~-tyP- 781 (870)
..|||+|||.|+....+...+.+ +|+-+|.. ..|..+.+| |+- -.....+ +.+. .+|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 46999999999977766655542 56777766 788777765 321 1112222 3332 355
Q ss_pred CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 782 rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.+||+|-|..++-..-..-.+..+|-+|-|+|||||+||++...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999987654432111113568999999999999999998653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-06 Score=96.43 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=68.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHH----hhCc---cceeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIY----ERGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~----eRGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||+|||+|.++..|++.+. -.|+-+|....+..+. ..|+ +-+++.-.+.+ .+|..||+|++..+...
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Iv~~~~~~~ 141 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI-SLPEKVDVIISEWMGYF 141 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCSSCEEEEEECCCBTT
T ss_pred CEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc-CcCCcceEEEEcChhhc
Confidence 5699999999999999988764 1444444445554443 3455 45555433443 35699999999665554
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
....-.+..+|.+++|+|||||++|+.
T Consensus 142 l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 142 LLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 443345777999999999999999886
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.5e-07 Score=94.54 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=35.9
Q ss_pred CCCccchhhhhccccccc---CCcChhhHHHhhhhcccCCcEEEEec
Q 002884 780 YPRSYDLLHADHLFSQLK---NRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 780 yPrtyDllHa~~lfS~~~---~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.+.+||+|.|.+++...+ ....+..+|-+|-|+|||||+|||..
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 358999999988875443 44567789999999999999999974
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=88.55 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc--------------CCCcEEEEc-CcccC-C
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER--------------GIPAISAVM-GTKRL-Q 526 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er--------------gl~~~~~v~-dae~L-P 526 (870)
++.+|||+|||+|.++..++.+ .|+++|+++..+..++.+..... ++..+.++. +...+ .
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4679999999999998877653 69999999999988875554441 555344444 33222 1
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
...+.||+|+... + -....+|..+.++|||||+|+++.
T Consensus 127 ~~~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1135799999752 1 124688999999999999998874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.6e-06 Score=85.34 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=82.6
Q ss_pred cccccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCccch
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRSYDL 786 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----PrtyDl 786 (870)
.-++|||+|||.|.++.+|+.. .|+.+-+.|.-..-....+...|+ |-+++ |..+.+..+ +.+||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 3468999999999999988763 355555555444445555555676 34444 333333333 578999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------hhHHHHHHHHHcC----CceEEEeecCCC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------SAVTEVENFLKSL----HWEILFAFSKDQ 850 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------~~~~~~~~~~~~l----~W~~~~~~~~~~ 850 (870)
|.+++.. -....+|-++-|+|||||++|+.|-. .....++.+.+.| ++++.+. .-.
T Consensus 140 V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~~ 211 (242)
T 3r3h_A 140 IFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL--AIA 211 (242)
T ss_dssp EEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE--SSS
T ss_pred EEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE--Ecc
Confidence 9876542 23446888999999999999996532 1123344444443 4554442 235
Q ss_pred ceEEEEEeC
Q 002884 851 EGVLSAQKG 859 (870)
Q Consensus 851 e~iL~~~K~ 859 (870)
.++++++|.
T Consensus 212 dG~~~~~k~ 220 (242)
T 3r3h_A 212 DGMFLVQPI 220 (242)
T ss_dssp SCEEEEEEC
T ss_pred CceEEEEEc
Confidence 788988874
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-06 Score=78.46 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=75.8
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceec-cccccccC-------CC-Cccchhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYH-DWCESFST-------YP-RSYDLLH 788 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h-~wce~f~t-------yP-rtyDllH 788 (870)
.+|||+|||.|.++.+|... .|+.+-+.| - +.+ .-+.+++ |+.+ ++. +| .+||+|.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~----~~~----~~~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~ 93 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M----DPI----VGVDFLQGDFRD-ELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C----CCC----TTEEEEESCTTS-HHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-c----ccc----CcEEEEEccccc-chhhhhhhccCCCCceeEEE
Confidence 47999999999999998764 345554444 1 111 1123333 3332 220 44 7999999
Q ss_pred hhcccccccCC--cC------hhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEEee------cCCCceE
Q 002884 789 ADHLFSQLKNR--CK------LVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILFAF------SKDQEGV 853 (870)
Q Consensus 789 a~~lfS~~~~r--c~------~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~~~------~~~~e~i 853 (870)
++..|...... -. ...+|.++-|+|||||.+++.... .....+...+.. .|...... ....+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (180)
T 1ej0_A 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVY 172 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEE
T ss_pred ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEE
Confidence 98776543221 00 157899999999999999997432 233444444444 36554321 1235788
Q ss_pred EEEEe
Q 002884 854 LSAQK 858 (870)
Q Consensus 854 L~~~K 858 (870)
++|++
T Consensus 173 ~~~~~ 177 (180)
T 1ej0_A 173 IVATG 177 (180)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88876
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=93.83 Aligned_cols=104 Identities=14% Similarity=0.024 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----------------------CCEEEEeCChhhHHHHHHHHHHHcCCCc------EE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----------------------RDVLTMSFAPKDEHDAQIQFALERGIPA------IS 517 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----------------------r~VtgVDiSp~ml~~A~vq~A~ergl~~------~~ 517 (870)
.++.+|||.|||+|.|+..+.+ ..++|+|+++.++..|..... .+|+.. .+
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~-l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL-LHDIEGNLDHGGAI 246 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH-TTTCCCBGGGTBSE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH-HhCCCccccccCCe
Confidence 4567999999999988765542 269999999999888775443 345542 33
Q ss_pred EEcCcccC-CCCCCceeEEEecccccc-ccc-----------C-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 518 AVMGTKRL-QFPRNVFDLVHCARCRVP-WHI-----------D-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 518 ~v~dae~L-Pfpd~SFDlV~Ss~~alh-w~~-----------D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
...+.... +.....||+|+++.-... +.. + ...++..+.+.|||||++++..+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 44443222 234578999999742111 110 1 13688999999999999998754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=88.19 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCc-cc-CC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGT-KR-LQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~da-e~-LP-fpd~SFDlV~ 536 (870)
++.+|||++||+|.++..++. ..|+++|+++..+..++. .+...++.. +.++.++ .. +. ...+.||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~-N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE-NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 467999999999999988776 269999999998888774 455556654 4555443 22 22 1245799999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.. + .....++..+.++|+|||+|+++.
T Consensus 131 lDP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 864 2 123568999999999999999884
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.97 E-value=4e-06 Score=90.98 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=82.9
Q ss_pred cccccccccccccccchhHHhhhcCC--Ce--EEEEeccCCCCCChhHHHhhCccc----eeccccccccCCCCccchhh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QV--WVMNVVNVNSPDTLPIIYERGLFG----IYHDWCESFSTYPRSYDLLH 788 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~v--wvmNvvp~~~~~tl~~i~eRGlig----~~h~wce~f~tyPrtyDllH 788 (870)
+.|.....|||+|||.|.++.+|.+. ++ ++..+.++-.. ..+...|+.+ +.+|.. ..+| +||+|.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~---~~~~~~~~~~~v~~~~~d~~---~~~p-~~D~v~ 252 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVAR---HRLDAPDVAGRWKVVEGDFL---REVP-HADVHV 252 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTT---CCCCCGGGTTSEEEEECCTT---TCCC-CCSEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhc---ccccccCCCCCeEEEecCCC---CCCC-CCcEEE
Confidence 35667789999999999999999763 33 33333111110 0111124322 223443 4567 999999
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-------------------------hhHHHHHHHHHcCCceEE
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-------------------------SAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-------------------------~~~~~~~~~~~~l~W~~~ 843 (870)
+.++|-.+.+ -....+|-++-|+|||||.|+|.|.. .....++.+++.-.|+..
T Consensus 253 ~~~vlh~~~d-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 331 (348)
T 3lst_A 253 LKRILHNWGD-EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLD 331 (348)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EehhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceE
Confidence 9888865543 12247999999999999999997631 124566777777777765
Q ss_pred Eeec-CCCceEEEEEe
Q 002884 844 FAFS-KDQEGVLSAQK 858 (870)
Q Consensus 844 ~~~~-~~~e~iL~~~K 858 (870)
.... .....|+.++|
T Consensus 332 ~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 332 RVVGTSSVMSIAVGVP 347 (348)
T ss_dssp EEEECSSSCEEEEEEE
T ss_pred EEEECCCCcEEEEEEe
Confidence 4322 23344555554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-06 Score=91.88 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=88.3
Q ss_pred ccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHh----hCcc---cee-ccccccccCCCCccchh
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYE----RGLF---GIY-HDWCESFSTYPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~e----RGli---g~~-h~wce~f~tyPrtyDll 787 (870)
.+.....|||+|||.|.++.+|.+. ++- ++-+|.+..+..+.+ .|+. -++ +|+.+ .+|..||+|
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 252 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLR---GTLVELAGPAERARRRFADAGLADRVTVAEGDFFK---PLPVTADVV 252 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSCCEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCE---EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCCCCCCEE
Confidence 3455678999999999999999765 332 222333444544443 3543 222 24443 456669999
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC--h--h-----------------------hHHHHHHHHHcCCc
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE--P--S-----------------------AVTEVENFLKSLHW 840 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~--~--~-----------------------~~~~~~~~~~~l~W 840 (870)
.+.++|-.+... ....+|-++-|+|||||+++|.+. . + ....++.++..-.|
T Consensus 253 ~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 253 LLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EEeccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 998888655321 123699999999999999998776 2 1 24567778888888
Q ss_pred eEEEe-ecCCCc-----eEEEEEeC
Q 002884 841 EILFA-FSKDQE-----GVLSAQKG 859 (870)
Q Consensus 841 ~~~~~-~~~~~e-----~iL~~~K~ 859 (870)
++... ...... .++.++|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 332 ALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred ceEEEEECCCCcccCCcEEEEEEEC
Confidence 76543 233344 78888885
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.2e-06 Score=89.91 Aligned_cols=135 Identities=20% Similarity=0.339 Sum_probs=87.7
Q ss_pred ccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHh----hCcc---cee-ccccccccCCCCccchh
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYE----RGLF---GIY-HDWCESFSTYPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~e----RGli---g~~-h~wce~f~tyPrtyDll 787 (870)
.+.....|||+|||.|.++.+|.+. ++-+ +-+|-+..+..+.+ .|+. -++ +|+.+ .+|..||+|
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 253 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLPRKADAI 253 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSSCEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCCCCccEE
Confidence 3455678999999999999999765 3322 22333455555444 3442 222 24544 456669999
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh--h------------------------hHHHHHHHHHcCCce
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--S------------------------AVTEVENFLKSLHWE 841 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~--~------------------------~~~~~~~~~~~l~W~ 841 (870)
.+.++|-.+.. -....+|-++-|+|||||++||.+.. . ....++.+++.-.|+
T Consensus 254 ~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (360)
T 1tw3_A 254 ILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 332 (360)
T ss_dssp EEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EEcccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence 98888765532 12246999999999999999987654 0 135667777777887
Q ss_pred EEEee-cCCC-----ceEEEEEeC
Q 002884 842 ILFAF-SKDQ-----EGVLSAQKG 859 (870)
Q Consensus 842 ~~~~~-~~~~-----e~iL~~~K~ 859 (870)
+.... .... ..++.|+|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 333 VEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEEeCCCCcccCccEEEEEEeC
Confidence 65432 2222 578888884
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-06 Score=84.47 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=75.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Ccc---ceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLF---GIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gli---g~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+..+. .|+-+|.. ..+..+.++ |+. -+++ |..+.+.. ...||+|-+++.+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~~ 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-LPLPEAVFIGGGG 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-SCCCSEEEECSCC
T ss_pred CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-CCCCCEEEECCcc
Confidence 4699999999999999987743 45555554 566555443 554 3333 23222222 2479998765422
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~~ 844 (870)
... +|-++-|+|||||.+|+.. ..+....+...++...+++..
T Consensus 133 -------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 133 -------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp -------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred -------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 455 9999999999999999985 456677888888888887654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-06 Score=86.99 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=72.9
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----------hCc--cceecccccc-ccC-CC-Cccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----------RGL--FGIYHDWCES-FST-YP-RSYD 785 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----------RGl--ig~~h~wce~-f~t-yP-rtyD 785 (870)
..|||+|||+|.|+.+|+.. +- .+|+-+|-. ..+..+.+ .|+ +-+++.=... ++. +| .+||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 45999999999999999865 22 155556654 55554432 233 3344432232 332 44 7999
Q ss_pred hhhhhccccc-------ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCC-ceE
Q 002884 786 LLHADHLFSQ-------LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLH-WEI 842 (870)
Q Consensus 786 llHa~~lfS~-------~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~-W~~ 842 (870)
+|.. .|.. .+.|.....+|-++-|+|||||.|+|. |.......+...+.... |..
T Consensus 126 ~v~~--~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 126 KMFF--LFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEE--ESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred EEEE--eCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 9865 2221 123334467999999999999999985 66666777777776654 443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-06 Score=88.04 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=65.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceec-cccccccCCCCccchhhhh-ccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYH-DWCESFSTYPRSYDLLHAD-HLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h-~wce~f~tyPrtyDllHa~-~lf 793 (870)
-..|||+|||.|.++..|++.+. +|+-+|.. ..+..+.++ |+ +-+++ |+.+ + +++.+||+|.+. +.+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-I-AFKNEFDAVTMFFSTI 116 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-C-CCCSCEEEEEECSSGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-c-ccCCCccEEEEcCCch
Confidence 35799999999999999998875 56666654 666665543 43 33333 3332 2 346899999764 222
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
... ..-.+..+|.++-|+|+|||.+|+.-
T Consensus 117 ~~~-~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 117 MYF-DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcC-CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 222 22245679999999999999999864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-06 Score=84.28 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=61.1
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHH----hhCc---cceec-cccccccCCCCccchhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIY----ERGL---FGIYH-DWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~----eRGl---ig~~h-~wce~f~tyPrtyDllHa 789 (870)
-+.|||+|||.|.++.+|+.. +. .|+-+|.. ..+.++. ..|+ +-+++ |..+.+...+. ||+|.+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFM 132 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence 467999999999999999765 22 23333433 3444433 3455 33444 34443344467 999877
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
++- ......+|-++-|+|||||.+|+.+
T Consensus 133 ~~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 133 DCD------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ETT------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cCC------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 521 2356678999999999999999965
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.2e-06 Score=91.05 Aligned_cols=135 Identities=17% Similarity=0.294 Sum_probs=90.0
Q ss_pred cccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHH----hhCc---ccee-ccccccccCCCCccch
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIY----ERGL---FGIY-HDWCESFSTYPRSYDL 786 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~----eRGl---ig~~-h~wce~f~tyPrtyDl 786 (870)
..|.....|||+|||.|.++.+|.+. ++- ++-+|.+..+..+. +.|+ |-+. +|.. .++|..||+
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~---~~~p~~~D~ 271 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLERPPVAEEARELLTGRGLADRCEILPGDFF---ETIPDGADV 271 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---TCCCSSCSE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC---CCCCCCceE
Confidence 35667789999999999999999765 332 22223344444433 3354 2222 2444 456668999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------------------hhHHHHHHHHHcCCceE
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------------------SAVTEVENFLKSLHWEI 842 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------------------~~~~~~~~~~~~l~W~~ 842 (870)
|.+.++|-.+.. -....+|-++-|+|||||+++|.|.. .....++.+++.-.|+.
T Consensus 272 v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWDD-DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 999888865532 11236999999999999999997521 11466778888888887
Q ss_pred EEeec--CCCceEEEEEe
Q 002884 843 LFAFS--KDQEGVLSAQK 858 (870)
Q Consensus 843 ~~~~~--~~~e~iL~~~K 858 (870)
..... .....|+.|+|
T Consensus 351 ~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 351 ERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEECSSSSEEEEEEEE
T ss_pred EEEEECCCCCcEEEEEEe
Confidence 65433 45667888876
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=6e-06 Score=89.76 Aligned_cols=135 Identities=18% Similarity=0.244 Sum_probs=85.2
Q ss_pred ccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh----Cccc---eec-cccccccCCCCccchh
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER----GLFG---IYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR----Glig---~~h-~wce~f~tyPrtyDll 787 (870)
.+.....|||+|||.|.++.+|.+. ++- ++-+|.+..+..+.++ |+.+ ++. |..+. ++|. +|+|
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v 260 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELD---STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAV 260 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCe---EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEE
Confidence 3556678999999999999999865 332 2222335556555544 6533 332 44332 3444 4999
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------------------hhHHHHHHHHHcCC
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------------------SAVTEVENFLKSLH 839 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------------------~~~~~~~~~~~~l~ 839 (870)
.+.++|-.+.+ -....+|-++-|+|||||.+||.+.. .....++.+++.-.
T Consensus 261 ~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aG 339 (359)
T 1x19_A 261 LFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG 339 (359)
T ss_dssp EEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHT
T ss_pred EEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCC
Confidence 99888776543 12567999999999999999887611 12345566666666
Q ss_pred ceEEEeecCCCceEEEEEeC
Q 002884 840 WEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 840 W~~~~~~~~~~e~iL~~~K~ 859 (870)
++......-....+++++|+
T Consensus 340 f~~v~~~~~~~~~vi~a~kp 359 (359)
T 1x19_A 340 YKDVTMVRKYDHLLVQAVKP 359 (359)
T ss_dssp CEEEEEEEETTEEEEEEECC
T ss_pred CceEEEEecCCceEEEEeCC
Confidence 66543211115567777774
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.7e-06 Score=79.89 Aligned_cols=126 Identities=12% Similarity=0.242 Sum_probs=73.1
Q ss_pred cccccccccchhHHhhhcCC------CeEEEEeccCCCCCChhHHHhhCccceecccccccc------------------
Q 002884 723 RNVMDMRAVYGGFAAALKDL------QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFS------------------ 778 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~------~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~------------------ 778 (870)
..|||+|||.|+++.+|++. .|+.+-+.|.... .++.-+..|+.+. .
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~--------~~v~~~~~d~~~~-~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPI--------PNVYFIQGEIGKD-NMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCC--------TTCEEEECCTTTT-SSCCC-----------CHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCC--------CCceEEEccccch-hhhhhccccccccccchhh
Confidence 46999999999999999754 2555555553210 1221122233322 1
Q ss_pred ------CCC-CccchhhhhcccccccCC--------cChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCce-
Q 002884 779 ------TYP-RSYDLLHADHLFSQLKNR--------CKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWE- 841 (870)
Q Consensus 779 ------tyP-rtyDllHa~~lfS~~~~r--------c~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~- 841 (870)
.+| .+||+|.+++.+...... -....+|.++-|+|||||+|++..- ......+...++.. |.
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~ 173 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL 173 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe
Confidence 144 699999987765431100 0012478899999999999998632 12234455555553 43
Q ss_pred EEEee-----cCCCceEEEEEe
Q 002884 842 ILFAF-----SKDQEGVLSAQK 858 (870)
Q Consensus 842 ~~~~~-----~~~~e~iL~~~K 858 (870)
+.... ....|.++||++
T Consensus 174 v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 174 VHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEECCCC-----CCEEEEEEEE
T ss_pred EEEECCcccCCcCceEEEEEec
Confidence 33221 124688999986
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.92 E-value=3e-06 Score=91.75 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=66.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHh----hCc---cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYE----RGL---FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~e----RGl---ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|++.+. -.|+-+|....+..+.+ .|+ |-+++.-.+.+ .+| ..||+|.+..++.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCchh
Confidence 4699999999999999988754 13334443334544433 365 44555434443 355 8999999977655
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIV 821 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~ii 821 (870)
.+...-.+..+|.+++|+|+|||.+|+
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 544445677899999999999999984
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-06 Score=93.44 Aligned_cols=100 Identities=12% Similarity=0.294 Sum_probs=68.1
Q ss_pred ccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh----Cc---ccee-ccccccccCCCCccchhhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER----GL---FGIY-HDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR----Gl---ig~~-h~wce~f~tyPrtyDllHa 789 (870)
...+.|||+|||.|.++.+|++. ++ .++-+|.+..+..+.++ |+ +.++ +|..+.-.++|.+||+|.+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 45688999999999999999763 33 23333334555555544 54 2232 2443321257899999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.+++-.+... ....+|-++-|+|||||.|+|.|
T Consensus 255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 255 SQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred echhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 8888655431 23468999999999999999975
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-06 Score=88.74 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=67.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc---cceec-cccccc--cCCC--Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL---FGIYH-DWCESF--STYP--RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h-~wce~f--~tyP--rtyDllHa~~lf 793 (870)
..|||+|||.|.++..|+.... +|+-+|.. ..+..+.++-- +-+++ |..+.- ..|+ ..||+|.+..+|
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 5699999999999999987654 55666654 66766666531 22222 332210 1122 349999998888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
..... -....+|-++-|+|||||+++|.+.
T Consensus 135 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 135 HHIPV-EKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp TTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 76642 3466899999999999999888753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.5e-06 Score=84.19 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=56.5
Q ss_pred cccccccccchhHHhhhcCC-C-eEEEEeccCCCC-CC----hhHHHhhC-ccceecccccc--ccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q-VWVMNVVNVNSP-DT----LPIIYERG-LFGIYHDWCES--FSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~-vwvmNvvp~~~~-~t----l~~i~eRG-lig~~h~wce~--f~tyPrtyDllHa~~l 792 (870)
..|||+|||+|.++..|.+. + - .|+-+|.. .. +..+..+. +.-+..|..+. +.+++.+||+|.++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 36999999999999988764 1 1 34445544 22 23333332 22233343332 134568999998851
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. ..-....+|.|+-|+|||||.|++.
T Consensus 135 -~---~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 -A---QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c---ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1112334589999999999999997
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-06 Score=91.90 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=69.4
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-------------ccceecccccccc---CC---C
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-------------LFGIYHDWCESFS---TY---P 781 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-------------lig~~h~wce~f~---ty---P 781 (870)
-..|||+|||.|+++..|...+. -.|+-+|.. ..+..+.+|- -+-+++.-++.++ .+ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 45799999999999999987643 245556654 5666665542 1233443344443 24 2
Q ss_pred Cccchhhhhcccccc-cCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 782 RSYDLLHADHLFSQL-KNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 782 rtyDllHa~~lfS~~-~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.+||+|.+..+|-.. .+.-.+..+|.++-|+|||||+||+....
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999887666433 22234567999999999999999998654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.9e-06 Score=88.19 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=86.6
Q ss_pred ccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh----Ccc---ceec-cccccccCCCCccchhhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER----GLF---GIYH-DWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR----Gli---g~~h-~wce~f~tyPrtyDllHa 789 (870)
.....|||+|||.|.++.+|.+. +. .++-+|.+..+..+.++ |+- -+++ |+.+. ++|..||+|.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEE
Confidence 45678999999999999999865 32 33333433444444433 543 3333 34332 46767999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecChh---------------------------hHHHHHHHHHcCCceE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS---------------------------AVTEVENFLKSLHWEI 842 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~---------------------------~~~~~~~~~~~l~W~~ 842 (870)
.++|..+.. -....+|-++-|+|||||+++|.+... ....++.+++.-.++.
T Consensus 239 ~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~ 317 (335)
T 2r3s_A 239 PNFLHHFDV-ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH 317 (335)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred cchhccCCH-HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence 888876532 134579999999999999999875320 1456777777778876
Q ss_pred EEe-ecCCCceEEEEEeC
Q 002884 843 LFA-FSKDQEGVLSAQKG 859 (870)
Q Consensus 843 ~~~-~~~~~e~iL~~~K~ 859 (870)
... .......+++++++
T Consensus 318 ~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 318 SQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp EEEECCTTSSSEEEEEEC
T ss_pred eeEEECCCCceeEEEecC
Confidence 543 22334567777653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-06 Score=84.52 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=65.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|...+. -.|+-+|.. ..+..+.+ .|+ +-+++ |+.+.+...+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 4699999999999999988754 355666654 55555443 344 33444 4544344456789999997666
Q ss_pred ccccCCcChhhHHHhhh--hcccCCcEEEEecCh
Q 002884 794 SQLKNRCKLVPVMAEVD--RIVRPGGKLIVRDEP 825 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmD--RILRPgG~~iird~~ 825 (870)
.. .....++..+. |+|+|||.+++....
T Consensus 111 ~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 32 23445666665 999999999998544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-06 Score=87.59 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHH----HhhCc--cceec-cccccccC-CC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPII----YERGL--FGIYH-DWCESFST-YP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i----~eRGl--ig~~h-~wce~f~t-yP-rtyDllHa~ 790 (870)
..|||+|||.|.++.+|+.. +. +|+-+|.. ..+..+ .+.|+ +-+++ |..+-+.. +| .+||+|++.
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 46999999999999999754 32 45555654 455443 34465 33343 33222231 44 899999874
Q ss_pred cccccccCCc-----ChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC-Cce
Q 002884 791 HLFSQLKNRC-----KLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL-HWE 841 (870)
Q Consensus 791 ~lfS~~~~rc-----~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l-~W~ 841 (870)
......+.+. ....+|-++-|+|||||.|+|. |...+...+..++... .|+
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~ 170 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK 170 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 2221122222 2235899999999999999986 5555666666666543 344
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=78.52 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=81.8
Q ss_pred CCccccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH-cC-
Q 002884 440 GGTQFIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE-RG- 512 (870)
Q Consensus 440 ggt~F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e-rg- 512 (870)
|..++...- ..|.+.|... +... ....++||-||.|.|..++.+++. +|+.+||++..+..++.-+..- .+
T Consensus 57 g~~q~te~De~~YhE~l~h~-~l~~-~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~ 134 (294)
T 3o4f_A 57 GVVQTTERDEFIYHEMMTHV-PLLA-HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS 134 (294)
T ss_dssp TEEEEETTTHHHHHHHHHHH-HHHH-SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG
T ss_pred CchhhccccHHHHHHHHHHH-HHhh-CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc
Confidence 334444333 3455544432 3222 345789999999999999999875 7999999999887776443321 11
Q ss_pred --CCcEEE-EcCc-ccCCCCCCceeEEEeccccccccc----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 513 --IPAISA-VMGT-KRLQFPRNVFDLVHCARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 513 --l~~~~~-v~da-e~LPfpd~SFDlV~Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-+.+.. +.|. .-+--..++||+|+.-. .-+... .-..++..+.|+|+|||+|+...
T Consensus 135 ~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 135 YDDPRFKLVIDDGVNFVNQTSQTFDVIISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp GGCTTEEEEESCTTTTTSCSSCCEEEEEESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCcEEEEechHHHHHhhccccCCEEEEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 233434 4443 34444567899999742 112111 12578999999999999999763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.3e-06 Score=81.37 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=73.5
Q ss_pred cccccccccchhHHhhhcCCC--eEEEEeccCCCCCChhHHHhhCccceeccccccccC-------CC----Cccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ--VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFST-------YP----RSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~--vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~t-------yP----rtyDllHa 789 (870)
.+|||+|||+|+++.+|++++ |+-+-+.|.... .|+.-+..|..+. .+ ++ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~--------~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI--------AGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC--------TTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC--------CCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 579999999999999999874 444555543211 2333333344332 11 11 48999988
Q ss_pred hccccccc--------CCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEE-Ee-----ecCCCceEE
Q 002884 790 DHLFSQLK--------NRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEIL-FA-----FSKDQEGVL 854 (870)
Q Consensus 790 ~~lfS~~~--------~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~-~~-----~~~~~e~iL 854 (870)
+.-..... .......+|.++-|+|||||.||+.- .......+...++.. +... +. -....|.++
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 65432111 11123467889999999999999753 122234455555543 3332 22 123579999
Q ss_pred EEEe
Q 002884 855 SAQK 858 (870)
Q Consensus 855 ~~~K 858 (870)
||++
T Consensus 177 v~~~ 180 (191)
T 3dou_A 177 MFFG 180 (191)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9986
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=7.3e-06 Score=88.50 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=57.3
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHH--HhhCc--cceeccccccccCC-CCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPII--YERGL--FGIYHDWCESFSTY-PRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i--~eRGl--ig~~h~wce~f~ty-PrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|+|+..|+++ .|.-+-+..+..+..+..+ ...|. +-++.+ . .+... +.+||+|.|+..|+..
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCccccC
Confidence 46999999999999999887 3544444211112211111 01121 222222 0 22223 4799999998777511
Q ss_pred cC---CcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KN---RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~---rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. .-....+|.++.|+|||||.|++..
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 10 0001147889999999999999963
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-06 Score=84.25 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=76.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc----cceec-cccccccCC-CCc-cchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL----FGIYH-DWCESFSTY-PRS-YDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl----ig~~h-~wce~f~ty-Prt-yDllHa~ 790 (870)
..|||+|||+|+++.+|+..+. -.|+-+|.. ..+..+.++ |+ +-+++ |..+....+ +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 3599999999999998666653 246666655 566655543 44 34444 333322233 478 9999987
Q ss_pred cccccccCCcChhhHHHhh--hhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 791 HLFSQLKNRCKLVPVMAEV--DRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~Em--DRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
..|. .-....+|-++ -|+|||||.+|+...... +... .-.|.......-....+.+.+|
T Consensus 133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~~--~~~~~~~~~~~yG~~~~~~~~~ 193 (201)
T 2ift_A 133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEKDK---PLIT--PENWTLLKEKTTGIVSYRLYQN 193 (201)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCCC--CTTEEEEEEEEETTEEEEEEEE
T ss_pred CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCCC---Cccc--cchhHHHHHHhcCCEEEEEEec
Confidence 7754 12456778888 789999999999865543 1111 1246654332223455666555
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=4e-06 Score=85.17 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=65.3
Q ss_pred ccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCC--CCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTY--PRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~ty--PrtyDllH 788 (870)
-..|||+|||.|.++.+|+.. +. .|+-++.. ..+..+.++ |+ +-+++ |..+.+... +.+||+|.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 457999999999999998765 22 44555554 566665555 55 34444 444433333 57899998
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
++..+. ....+|.++-|+|||||.+|+.+
T Consensus 132 ~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 865543 45678999999999999999975
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-06 Score=83.23 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=66.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~ty-PrtyDllHa~~lf 793 (870)
..|||+|||+|.++.+++..+. -.|+-+|.. ..+..+.+ .|+ +-+++ |+.+-...+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 4699999999999997776653 234455543 55555443 354 44444 333332334 4899999987765
Q ss_pred ccccCCcChhhHHHhhhh--cccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDR--IVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDR--ILRPgG~~iird~ 824 (870)
.... -.+..+|.++-| +|+|||.|++...
T Consensus 124 ~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 124 NVDS--ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred Ccch--hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 5321 246678999998 9999999999854
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-05 Score=81.41 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred cccccccccchhHHhhhcCC--------CeEEEEeccCCCCCChhHHHhh-Cccceec-ccccc--ccCCCC-ccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--------QVWVMNVVNVNSPDTLPIIYER-GLFGIYH-DWCES--FSTYPR-SYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--------~vwvmNvvp~~~~~tl~~i~eR-Glig~~h-~wce~--f~tyPr-tyDllHa 789 (870)
..|||+|||.|++++.|++. .|+.+-+.|.- +..+... .-+-+++ |..+. +...+. +||+|++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~----l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR----CQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT----CCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH----HHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 57999999999999998753 24444443332 2222111 1133444 34332 222233 7999987
Q ss_pred hcccccccCCcChhhHHHhhhh-cccCCcEEEEecCh-----hhHHHHHHHHHcC--CceEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDR-IVRPGGKLIVRDEP-----SAVTEVENFLKSL--HWEIL 843 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDR-ILRPgG~~iird~~-----~~~~~~~~~~~~l--~W~~~ 843 (870)
++. + ..+..+|.++.| +|||||++|+.|.. .....+..+++.. ++.+.
T Consensus 159 d~~----~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 159 DNA----H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp ESS----C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCc----h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 554 1 256779999998 99999999998731 1224677778777 56653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.2e-06 Score=81.65 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=63.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccCCC---Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFSTYP---RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~tyP---rtyDllHa~~l 792 (870)
..|||+|||.|.++.+|...+.- |+-+|.. ..+..+.+ .|+ +-+++ |+.+.+..++ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 46999999999999999887542 6666664 55554443 343 33444 3433222332 38999999887
Q ss_pred cccccCCcChhhHHHhhh--hcccCCcEEEEecCh
Q 002884 793 FSQLKNRCKLVPVMAEVD--RIVRPGGKLIVRDEP 825 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmD--RILRPgG~~iird~~ 825 (870)
|. .....++.++- |+|+|||.+++....
T Consensus 120 ~~-----~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 120 YA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Cc-----hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 75 23445666666 999999999998543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.77 E-value=6.3e-06 Score=87.42 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=77.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccc----cCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESF----STYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f----~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||+|.++..|++++. .|+-+|.. .+|..+.++---..++ +|...- ...+.+||+|.++.+|.++
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF 123 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence 4699999999999999998864 56667765 7888877764222222 343221 1235799999998887654
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecChhh----HHHHHHHHHcCCceE
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----VTEVENFLKSLHWEI 842 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~~~----~~~~~~~~~~l~W~~ 842 (870)
.. -.+..+|.+|-|+| |||.++++-.... ...++.......|..
T Consensus 124 ~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~ 171 (261)
T 3iv6_A 124 TT-EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAK 171 (261)
T ss_dssp CH-HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHH
T ss_pred CH-HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeee
Confidence 32 24567899999999 9999999843321 233444444444443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.8e-06 Score=89.59 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=63.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHh----hCc---cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYE----RGL---FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~e----RGl---ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|++.+. -.|+-+|....+..+.+ .|+ +-+++.-.+.+ ++| .+||+|-+..+..
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMGY 142 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCCBT
T ss_pred CEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCchh
Confidence 4699999999999999988753 13333443334544433 344 44555433443 456 8999999876533
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLI 820 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~i 820 (870)
.+...-.+..+|.++.|+|||||.+|
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 33333346679999999999999998
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.74 E-value=7.8e-06 Score=89.22 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=64.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHh----hCc---cceeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYE----RGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~e----RGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++..|+..+. -.|+-++....+..+.+ .|+ +-+++.-.+.+ .+|..||+|.+.+++.+
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMGYM 128 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEEECCCBTT
T ss_pred CEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-CCCCceeEEEEeCchhc
Confidence 4699999999999999987754 12333333334444333 365 44555322332 35688999999888765
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+.. -.+...|.++.|+|+|||.+|+.
T Consensus 129 ~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 129 LFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 543 23556788999999999999965
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=6.3e-06 Score=83.04 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=77.5
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC-----Cc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP-----RS 783 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP-----rt 783 (870)
.-++|||+|||.|.++.+|+.. +. .|+-+|.. ..+.++.+ .|+ +-+++ |..+.+..++ .+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 3467999999999999999874 22 33334432 44444433 365 33333 3333333332 68
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------hhHHHHHHH----HHcCCceEEEeec
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------SAVTEVENF----LKSLHWEILFAFS 847 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------~~~~~~~~~----~~~l~W~~~~~~~ 847 (870)
||+|.++.. ......++.++-|+|||||.+|+.+.. .....++.+ ...-++.+.+.
T Consensus 146 ~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-- 217 (229)
T 2avd_A 146 FDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL-- 217 (229)
T ss_dssp EEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEE--
Confidence 999887543 234557899999999999999996421 122333433 33444555443
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.-..++++++|.
T Consensus 218 p~~dGl~~~~k~ 229 (229)
T 2avd_A 218 PLGDGLTLAFKI 229 (229)
T ss_dssp CSTTCEEEEEEC
T ss_pred ecCCceEEEEEC
Confidence 234689888873
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.2e-05 Score=86.12 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
++++.++++...+. ...++.+|||||||+|.|+.+++.. .|+|+|+...+...+.. ....+...+.+..
T Consensus 73 SRAAfKL~ei~eK~-----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~--~~~~g~~ii~~~~ 145 (282)
T 3gcz_A 73 SRGSAKLRWMEERG-----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM--RTTLGWNLIRFKD 145 (282)
T ss_dssp STHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEEC
T ss_pred cHHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc--cccCCCceEEeeC
Confidence 45555555544443 1246779999999999999988753 68899997643111100 0001222343443
Q ss_pred CcccCCCCCCceeEEEecccccc----cccCh--HHHHHHHHhhcCCC--cEEEEEE
Q 002884 521 GTKRLQFPRNVFDLVHCARCRVP----WHIDG--GKLLLELNRVLRPG--GYFVWSA 569 (870)
Q Consensus 521 dae~LPfpd~SFDlV~Ss~~alh----w~~D~--~~vL~Ei~RVLKPG--G~Lv~S~ 569 (870)
+.....++...+|+|+|.. +.+ +.+.. ..+|.-+.++|+|| |.|++-.
T Consensus 146 ~~dv~~l~~~~~DvVLSDm-ApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 146 KTDVFNMEVIPGDTLLCDI-GESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp SCCGGGSCCCCCSEEEECC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcchhhcCCCCcCEEEecC-ccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 3333446678899999963 233 22221 13566678999999 9999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.73 E-value=3e-05 Score=81.05 Aligned_cols=117 Identities=12% Similarity=0.113 Sum_probs=75.9
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHh-------hCc---cceec-ccccccc-----CC-CCc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYE-------RGL---FGIYH-DWCESFS-----TY-PRS 783 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~e-------RGl---ig~~h-~wce~f~-----ty-Prt 783 (870)
..|||+|||.|.++..|..+. - .+|+-+|.. ..+..+.+ .|+ +-+++ |+.+... .+ +.+
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 469999999999999887652 1 245555543 44444333 333 44555 3333211 24 479
Q ss_pred cchhhhhcccccc---------------cCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE
Q 002884 784 YDLLHADHLFSQL---------------KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 784 yDllHa~~lfS~~---------------~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~ 842 (870)
||+|-++--|-.. ...+.+..+|.++-|+|||||+|++--+.+.+..+...++.. |..
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 9999997433221 223668889999999999999999887777777777777764 654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.72 E-value=2.9e-06 Score=82.23 Aligned_cols=97 Identities=12% Similarity=0.253 Sum_probs=63.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc---cceec-cccccccCC---CCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL---FGIYH-DWCESFSTY---PRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl---ig~~h-~wce~f~ty---PrtyDllHa~ 790 (870)
..|||+|||.|.++.+|...+. ..|+-+|.. ..+..+. ..|+ +-+++ |+.+....+ +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 4699999999999998876653 234444443 4444333 3354 44555 455433222 4789999987
Q ss_pred cccccccCCcChhhHHHhh--hhcccCCcEEEEecCh
Q 002884 791 HLFSQLKNRCKLVPVMAEV--DRIVRPGGKLIVRDEP 825 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~Em--DRILRPgG~~iird~~ 825 (870)
..|.. .....++..+ -|+|+|||++++....
T Consensus 124 ~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 76542 2344566666 9999999999998543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.72 E-value=2.5e-05 Score=82.20 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-C--EEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCC-----ceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-D--VLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRN-----VFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-~--VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~-----SFDlV~ 536 (870)
.++.+|||||||+|.++. |... . |+++|+++.|+..++..... .+...++. +...+++++. ..|.|+
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~~~~~~vv 95 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGELAEKMGQPLRVF 95 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHHHHHHTSCEEEE
T ss_pred CCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc---CCceEEEECchhhCCHHHhhcccCCceEEE
Confidence 457799999999999999 7653 6 99999999988766532211 12444444 4566665432 347788
Q ss_pred ec
Q 002884 537 CA 538 (870)
Q Consensus 537 Ss 538 (870)
++
T Consensus 96 sN 97 (252)
T 1qyr_A 96 GN 97 (252)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=77.75 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCC-C------------eEEEEeccCCCCCChhHHHhhCcccee-c-cccccc------cCCC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q------------VWVMNVVNVNSPDTLPIIYERGLFGIY-H-DWCESF------STYP 781 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~------------vwvmNvvp~~~~~tl~~i~eRGlig~~-h-~wce~f------~tyP 781 (870)
.+|||+|||.|+++.+|... + |+.+-+.|... + .+ +-.+ + |+...- ..++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~---~-----~~-~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP---L-----EG-ATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC---C-----TT-CEEECSCCTTSHHHHHHHHHHSG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc---C-----CC-CeEEEeccCCCHHHHHHHHHhcC
Confidence 56999999999999999764 2 44444444211 1 11 1112 1 222110 1134
Q ss_pred -CccchhhhhcccccccC--------CcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEEe-----e
Q 002884 782 -RSYDLLHADHLFSQLKN--------RCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILFA-----F 846 (870)
Q Consensus 782 -rtyDllHa~~lfS~~~~--------rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~~-----~ 846 (870)
++||+|-+++.+..... ......+|.++-|+|||||.|++.+-. .....+...++..--.+... .
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~ 174 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASR 174 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC---
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccC
Confidence 68999988654432111 011146899999999999999998432 22234444444331222222 1
Q ss_pred cCCCceEEEEEe
Q 002884 847 SKDQEGVLSAQK 858 (870)
Q Consensus 847 ~~~~e~iL~~~K 858 (870)
....|.+|+|..
T Consensus 175 ~~~~e~~~v~~g 186 (196)
T 2nyu_A 175 KESSEVYFLATQ 186 (196)
T ss_dssp -----EEEEEEE
T ss_pred ccCceEEEEeee
Confidence 123577777764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00022 Score=85.33 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=72.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Ccc----ceec-cccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLF----GIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gli----g~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|||+|+|+.+++..+. -.|+-+|.. ..|..+.+. |+- -+++ |..+-+.....+||+|-++--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 4699999999999998877654 234455554 455554432 442 2333 333322233579999987653
Q ss_pred -ccccc-------CCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 793 -FSQLK-------NRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 -fS~~~-------~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
|+..+ ..-....++.++-|+|+|||++++.-...........+....++...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~ 678 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQE 678 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceee
Confidence 22111 11234578899999999999999986553222224555666666443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=8.6e-06 Score=88.10 Aligned_cols=124 Identities=12% Similarity=0.038 Sum_probs=76.5
Q ss_pred cccccccccchhHHhhhc-C-CCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALK-D-LQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~-~-~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|++++.+. . .+. .|+-+|.. ..+..+.++ |+ .-+.-.|.....+| .+||+|.+.++
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC--
Confidence 569999999999886653 2 233 34444543 556555544 77 33333344444455 89999976444
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHH----HH-HHHHHcCCceEEEeecC---CCceEEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVT----EV-ENFLKSLHWEILFAFSK---DQEGVLSAQK 858 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~----~~-~~~~~~l~W~~~~~~~~---~~e~iL~~~K 858 (870)
--....++-|+-|+|||||.|++++...... .+ ....+ .|+.....+. ....|.+++|
T Consensus 198 ----~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k 263 (298)
T 3fpf_A 198 ----AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFK 263 (298)
T ss_dssp ----CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEE
T ss_pred ----ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEc
Confidence 1245689999999999999999997432210 00 11222 6766554332 2456888888
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=80.50 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=71.6
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHH--------hhCc--cceeccccccccCCC-Cccchhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIY--------ERGL--FGIYHDWCESFSTYP-RSYDLLH 788 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~--------eRGl--ig~~h~wce~f~tyP-rtyDllH 788 (870)
..|||+|||.|.++.+|+.. +. .|+-+|.. ..|..+. .+|+ +-+++.-.+.++ ++ .+ |.++
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v~ 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GELH 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEEE
Confidence 45999999999999999876 33 45555554 5555421 3454 233343334433 44 44 6655
Q ss_pred hhccccccc----CCcChhhHHHhhhhcccCCcEEEEecC-------------------hhhHHHHHHHHHcCCceEEEe
Q 002884 789 ADHLFSQLK----NRCKLVPVMAEVDRIVRPGGKLIVRDE-------------------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 789 a~~lfS~~~----~rc~~~~vl~EmDRILRPgG~~iird~-------------------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
. +|+... ..-+...+|-+|-|+|||||.|+|... ......+..++..-.|++...
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 104 V--LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp E--ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred E--EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 2 222100 001226799999999999999999621 112345888888899988643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.9e-06 Score=88.41 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=78.8
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHh----hCccceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYE----RGLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~e----RGlig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||+|.++.+|.... -+ .|+-+|.. ..+..+.+ .|+-..++ ++..+...+.+||+|.++..|...
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEEE-EccccccccCCeeEEEECCCcccC
Confidence 469999999999999997652 11 33344443 34444433 35432221 222222226899999998887642
Q ss_pred c--CCcChhhHHHhhhhcccCCcEEEEecCh--hhHHHHHHHHHcCCceEEEeecCCCceEEEEEeC
Q 002884 797 K--NRCKLVPVMAEVDRIVRPGGKLIVRDEP--SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 797 ~--~rc~~~~vl~EmDRILRPgG~~iird~~--~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~ 859 (870)
. ..-....+|.++-|+|||||.++|.... .....++.++.. + .......+-+|+.+.|.
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~--~~~~~~~gf~v~~~~k~ 337 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--H--EVIAQTGRFKVYRAIMT 337 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--C--EEEEECSSEEEEEEEC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--e--EEEeeCCCEEEEEEEeC
Confidence 1 1123567999999999999999997533 234455555543 2 22234556778877763
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=81.84 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=73.4
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceec-ccccc--ccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYH-DWCES--FSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h-~wce~--f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|++. .|+.+-+.|......+..+..+.-+-+++ |..+. ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-- 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-- 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC--
Confidence 46999999999999999765 23333222210011333444433233333 44432 2223478999988433
Q ss_pred cccCCcCh-hhHHHhhhhcccCCcEEEEecChhh----------HHHHHHHHHcCCceEEEeec-C---CCceEEEEEe
Q 002884 795 QLKNRCKL-VPVMAEVDRIVRPGGKLIVRDEPSA----------VTEVENFLKSLHWEILFAFS-K---DQEGVLSAQK 858 (870)
Q Consensus 795 ~~~~rc~~-~~vl~EmDRILRPgG~~iird~~~~----------~~~~~~~~~~l~W~~~~~~~-~---~~e~iL~~~K 858 (870)
.... ..++.++-|+|||||.+++.-.... ......++....|++..... . ...-+++++|
T Consensus 157 ----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 157 ----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp ----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred ----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 1222 3457789999999999999633211 22224666777787754211 1 2345666665
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.1e-05 Score=82.89 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=55.3
Q ss_pred cccccccccchhHHhhhc--CCCeEEEEeccCCCC--CChhHH---H----hhCccc--eeccccccccC-CCCccchhh
Q 002884 723 RNVMDMRAVYGGFAAALK--DLQVWVMNVVNVNSP--DTLPII---Y----ERGLFG--IYHDWCESFST-YPRSYDLLH 788 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~--~~~vwvmNvvp~~~~--~tl~~i---~----eRGlig--~~h~wce~f~t-yPrtyDllH 788 (870)
..|||+|||.|.++.+|+ ..+. +|+-+|.. ..|.++ . .+|+.. .++.-.+.++. +...+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 459999999999999998 3343 55556654 344443 2 346533 33333333321 113344444
Q ss_pred hhccccc--ccCCcChhhHHHhhhhcccCCcEEEE
Q 002884 789 ADHLFSQ--LKNRCKLVPVMAEVDRIVRPGGKLIV 821 (870)
Q Consensus 789 a~~lfS~--~~~rc~~~~vl~EmDRILRPgG~~ii 821 (870)
+...+.. ...+-....+|.||-|+|||||.|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 3211111 11112335689999999999999999
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.69 E-value=1e-05 Score=82.77 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCC---------
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTY--------- 780 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~ty--------- 780 (870)
-.+|||+|||.|.++..|+.. +. .|+-+|.. ..+..+.++ |+ +-+++ |..+.+..+
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 457999999999999998764 22 33334433 444444443 55 33333 233322212
Q ss_pred ------C-CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------hhHHHHH----HHHHc
Q 002884 781 ------P-RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------SAVTEVE----NFLKS 837 (870)
Q Consensus 781 ------P-rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------~~~~~~~----~~~~~ 837 (870)
+ .+||+|.+++.. -.+..+|.++-|+|||||.+|+.+.. .....++ .+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYND 211 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhC
Confidence 2 689999775332 23457889999999999999997621 1222333 33444
Q ss_pred CCceEEEeecCCCceEEEEEeCC
Q 002884 838 LHWEILFAFSKDQEGVLSAQKGN 860 (870)
Q Consensus 838 l~W~~~~~~~~~~e~iL~~~K~~ 860 (870)
-++.+... .-..++.+++|.+
T Consensus 212 ~~~~~~~~--p~~~g~~~~~~~~ 232 (239)
T 2hnk_A 212 SLVDVSLV--PIADGVSLVRKRL 232 (239)
T ss_dssp TTEEEEEE--CSTTCEEEEEECC
T ss_pred CCeEEEEE--EcCCceEeeeehh
Confidence 45555443 2246799999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2e-05 Score=83.86 Aligned_cols=129 Identities=12% Similarity=0.223 Sum_probs=84.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCcc---chhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSY---DLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrty---DllHa~ 790 (870)
..|||+|||.|.++.+|+..+- .+|+-+|.. ..+.++.+ .|+ +-+++ ||.+.+ +.+| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEEc
Confidence 4699999999999999986632 245555544 55555443 365 44554 566543 4678 998876
Q ss_pred cccccc----------c------CCcChhhHHHhhh-hcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceE
Q 002884 791 HLFSQL----------K------NRCKLVPVMAEVD-RIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGV 853 (870)
Q Consensus 791 ~lfS~~----------~------~rc~~~~vl~EmD-RILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~i 853 (870)
--+... . ..++-..++.++- |+|+|||++++.-..+....+..+++.. ....|-.+.+++
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~g~~R~ 276 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSAGKYRF 276 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTTSSEEE
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccCCCceE
Confidence 211110 0 1122236889999 9999999999986666667777777765 223355667888
Q ss_pred EEEEeC
Q 002884 854 LSAQKG 859 (870)
Q Consensus 854 L~~~K~ 859 (870)
+++.++
T Consensus 277 ~~~~~k 282 (284)
T 1nv8_A 277 LLLNRR 282 (284)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888775
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=80.57 Aligned_cols=98 Identities=11% Similarity=0.176 Sum_probs=61.7
Q ss_pred cccccccccchhHHhhhcCC-C--e--EEEEeccC--CCCCChhHHHhh----Cc---cceec-c-ccccccCCC-Cccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q--V--WVMNVVNV--NSPDTLPIIYER----GL---FGIYH-D-WCESFSTYP-RSYD 785 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~--v--wvmNvvp~--~~~~tl~~i~eR----Gl---ig~~h-~-wce~f~tyP-rtyD 785 (870)
..|||+|||.|.++..|.+. + . ..+-+.|. ..+..+..+.++ |+ +-+++ | +...-.+|| .+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 56999999999999999865 2 3 33322222 112366665544 43 33333 2 322223454 8999
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+|++.++|.+... ...++-.+.++|+|||++++.+
T Consensus 125 ~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 125 RVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 9999988876543 3445555566666799999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-05 Score=82.57 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=79.8
Q ss_pred ccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHH----HhhCcc----ceec-cccccccCC-CCccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPII----YERGLF----GIYH-DWCESFSTY-PRSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i----~eRGli----g~~h-~wce~f~ty-PrtyDllHa 789 (870)
+|||+|||.|.++.+|+.. +. .|+-+|.. ..+.++ ...|+- -+++ |..+-+..+ +.+||+|.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 7999999999999988752 22 23334433 333333 233543 3333 333444455 489999977
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------hhHHHHHHHHHcCCceEE--EeecCCCceEEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------SAVTEVENFLKSLHWEIL--FAFSKDQEGVLS 855 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------~~~~~~~~~~~~l~W~~~--~~~~~~~e~iL~ 855 (870)
+... -....++-++-|+|||||++++.|-. .....++.+...|++.-+ ...-.-.+++++
T Consensus 136 d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~ 209 (221)
T 3dr5_A 136 QVSP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTV 209 (221)
T ss_dssp CCCT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEE
T ss_pred cCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHH
Confidence 5432 23456889999999999999997532 112355666666666522 222334678999
Q ss_pred EEeCC
Q 002884 856 AQKGN 860 (870)
Q Consensus 856 ~~K~~ 860 (870)
++|.+
T Consensus 210 ~~~~~ 214 (221)
T 3dr5_A 210 VTKAL 214 (221)
T ss_dssp EEECC
T ss_pred HHHHH
Confidence 99976
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-05 Score=82.97 Aligned_cols=115 Identities=12% Similarity=0.197 Sum_probs=70.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh------------Cc--cceec-cccccccC-CC-Ccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER------------GL--FGIYH-DWCESFST-YP-RSY 784 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR------------Gl--ig~~h-~wce~f~t-yP-rty 784 (870)
..|||+|||+|+|+.+|+...- -.+|+-+|.. ..+..+.++ |+ +-+++ |..+.+.. ++ .+|
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 4699999999999999976521 0245555544 455554432 65 23333 33332332 43 678
Q ss_pred chhhhhcccccc-------cCCcChhhHHHhhhhcccCCcEEEE-ecChhhHHHHHHHHHcCCc
Q 002884 785 DLLHADHLFSQL-------KNRCKLVPVMAEVDRIVRPGGKLIV-RDEPSAVTEVENFLKSLHW 840 (870)
Q Consensus 785 DllHa~~lfS~~-------~~rc~~~~vl~EmDRILRPgG~~ii-rd~~~~~~~~~~~~~~l~W 840 (870)
|.|.. +|..- +.|.-...+|.++-|+|+|||.|++ +|.....+.+...+....|
T Consensus 130 d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 130 SKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred CEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 87653 22211 1122225799999999999999988 5776666777766666554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.5e-06 Score=90.42 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=56.3
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC---CChhHHHhhCc-cceeccccccccCC-CCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP---DTLPIIYERGL-FGIYHDWCESFSTY-PRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~---~tl~~i~eRGl-ig~~h~wce~f~ty-PrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|+|+..|++. .|+-+-+.|.... ..+. ....|. +-+++. +..+..+ +.+||+|.|+..+...
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~-~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd~~~~~~ 153 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI-TESYGWNIVKFKS-RVDIHTLPVERTDVIMCDVGESSP 153 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCC-CCBTTGGGEEEEC-SCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhh-hhccCCCeEEEec-ccCHhHCCCCCCcEEEEeCcccCC
Confidence 46999999999999998876 5666666663110 1000 000111 112210 1122223 5899999987552211
Q ss_pred cC----CcChhhHHHhhhhcccCCc--EEEEec
Q 002884 797 KN----RCKLVPVMAEVDRIVRPGG--KLIVRD 823 (870)
Q Consensus 797 ~~----rc~~~~vl~EmDRILRPgG--~~iird 823 (870)
.. .-.+ .+|-++.|+||||| .|++..
T Consensus 154 ~~~~d~~~~l-~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 154 KWSVESERTI-KILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHCTTCEEEEEE
T ss_pred ccchhHHHHH-HHHHHHHHHhccCCCeEEEEEe
Confidence 10 0011 27888999999999 999863
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.5e-06 Score=88.44 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=64.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|+++.+|+..+. .|+-+|.. ..+..+.+ .|+ +-+++.-.+.+. -+.+||+|.++..|.
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 5699999999999999998863 55566654 55555443 354 344442222222 347999999988877
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.... ....+.++-|+|+|||++|+..
T Consensus 156 ~~~~---~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPDY---ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGGG---GGSSSBCTTTSCSSCHHHHHHH
T ss_pred Ccch---hhhHHHHHHhhcCCcceeHHHH
Confidence 5432 2236779999999999988774
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.68 E-value=5.5e-05 Score=89.90 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhhhc-CCCCCEEEEECCCCchhHH----HH--hc---------C--CEEEEeCChhhHHHHHHHHHHH
Q 002884 449 LHYIDFIQQAVPKIAW-GKYTRVSLDVGCGVASFGG----YL--FE---------R--DVLTMSFAPKDEHDAQIQFALE 510 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~-g~~~~~VLDIGCGtG~~a~----~L--a~---------r--~VtgVDiSp~ml~~A~vq~A~e 510 (870)
..|.+.|...+..+.. +.....|||||||+|-+.. +. ++ . +|++||-++......+....
T Consensus 390 ~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-- 467 (745)
T 3ua3_A 390 DVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-- 467 (745)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh--
Confidence 3455555555443321 1234589999999997742 11 22 2 89999999965544343332
Q ss_pred cCCC-cEEEE-cCcccCCCC-----CCceeEEEecccccccc---cChHHHHHHHHhhcCCCcEEE
Q 002884 511 RGIP-AISAV-MGTKRLQFP-----RNVFDLVHCARCRVPWH---IDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 511 rgl~-~~~~v-~dae~LPfp-----d~SFDlV~Ss~~alhw~---~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.+.. .+.++ .+.+.+.+| .+.+|+|+|-. +... +-...+|..+.|.|||||+++
T Consensus 468 Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 468 RTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCeEEEEeCchhhcccccccCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3433 23344 445666553 46799999953 2222 122578888899999999987
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.67 E-value=7.8e-05 Score=79.62 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--C----EEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCC------cee
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--D----VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN------VFD 533 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~----VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~------SFD 533 (870)
.++.+|||||||+|.++..|+.+ . |+++|+++.|+..++.. . .....+...+...+++++- ..+
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~~D~~~~~~~~~~~~~~~~~~ 116 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHAGDALTFDFGSIARPGDEPSL 116 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEESCGGGCCGGGGSCSSSSCCE
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEECChhcCChhHhcccccCCce
Confidence 45789999999999999999874 5 99999999999888754 2 2123344455677776532 234
Q ss_pred EEEec
Q 002884 534 LVHCA 538 (870)
Q Consensus 534 lV~Ss 538 (870)
.|++|
T Consensus 117 ~vv~N 121 (279)
T 3uzu_A 117 RIIGN 121 (279)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66666
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=82.78 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=73.5
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhh-Cccceeccccccc--cCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYER-GLFGIYHDWCESF--STYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eR-Glig~~h~wce~f--~tyPrtyDllHa~~lfS 794 (870)
-.|||+|||.|+++..|++. .|+.+-+.|.-....+..+.+| ++..+..|-.... ...+..||+|.++..+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 45999999999999888764 2444333222100112333344 3444444544321 1224689998876432
Q ss_pred cccCCcChhhHHH-hhhhcccCCcEEEEec----------ChhhHHHHHHHHHcCCceEEEe-ec---CCCceEEEEEeC
Q 002884 795 QLKNRCKLVPVMA-EVDRIVRPGGKLIVRD----------EPSAVTEVENFLKSLHWEILFA-FS---KDQEGVLSAQKG 859 (870)
Q Consensus 795 ~~~~rc~~~~vl~-EmDRILRPgG~~iird----------~~~~~~~~~~~~~~l~W~~~~~-~~---~~~e~iL~~~K~ 859 (870)
.....+|+ .+.|+|||||.|++.- +.++...+...++.-..++.-. .- +...-+++++|+
T Consensus 157 -----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 157 -----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp -----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred -----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence 34445555 4566999999999862 2223334444555445554432 11 235678888886
Q ss_pred C
Q 002884 860 N 860 (870)
Q Consensus 860 ~ 860 (870)
+
T Consensus 232 ~ 232 (232)
T 3id6_C 232 G 232 (232)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.66 E-value=5e-05 Score=79.60 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=73.9
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh-----Cc--cceec-cccccccCCC-Cccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER-----GL--FGIYH-DWCESFSTYP-RSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR-----Gl--ig~~h-~wce~f~tyP-rtyDllH 788 (870)
-..|||+|||.|+++..|++. +. .|+-+|.. ..+..+.++ |+ +-+++ |+.+ .+| .+||+|-
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~Vi 184 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDAVI 184 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEEEE
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccEEE
Confidence 357999999999999999865 33 44455553 555555554 53 23333 4444 344 6899987
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh-hHHHHHHHHHcCCceEE
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS-AVTEVENFLKSLHWEIL 843 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~-~~~~~~~~~~~l~W~~~ 843 (870)
++ --....+|-++-|+|||||.+++..... ....+...+....|...
T Consensus 185 ~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 185 AD--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EC--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred Ec--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 61 1234578999999999999999987654 55667677777767654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.1e-05 Score=82.58 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=76.7
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC-----Ccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP-----RSY 784 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP-----rty 784 (870)
-++|||+|||.|.++.+|+.. +. .|+-+|.. ..+.++.+ .|+ |-+++ +..+.+..+| .+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 457999999999999999865 22 23333332 44444433 365 33333 3333333332 789
Q ss_pred chhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh------------hhHHHHHHHHH----cCCceEEEeecC
Q 002884 785 DLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------------SAVTEVENFLK----SLHWEILFAFSK 848 (870)
Q Consensus 785 DllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------------~~~~~~~~~~~----~l~W~~~~~~~~ 848 (870)
|+|.+++.. -....+|-++-|+|||||++|+.+.. .....++.+.. .-++...+. .
T Consensus 150 D~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p 221 (232)
T 3cbg_A 150 DLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVI--P 221 (232)
T ss_dssp EEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEE--C
T ss_pred CEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEE--E
Confidence 999875431 24457899999999999999996422 12234444443 345555443 2
Q ss_pred CCceEEEEEeC
Q 002884 849 DQEGVLSAQKG 859 (870)
Q Consensus 849 ~~e~iL~~~K~ 859 (870)
-.+++.+++|.
T Consensus 222 ~~dG~~~~~~~ 232 (232)
T 3cbg_A 222 LGDGMTLALKK 232 (232)
T ss_dssp SBTCEEEEEEC
T ss_pred cCCeEEEEEeC
Confidence 24678888874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.6e-06 Score=82.31 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=61.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCCCCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
-..|||+|||.|.++..|.+.+. +|+-+|.. ..+..+.++ |+ +-+++ |+.+. ..-+.+||+|.+++.+
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG-WQARAPFDAIIVTAAP 153 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC-CGGGCCEEEEEESSBC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC-CccCCCccEEEEccch
Confidence 35699999999999999987743 44445543 555555544 54 33344 33332 2224799999997766
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.... -++-|+|||||++|+.-..
T Consensus 154 ~~~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCC---------THHHHTEEEEEEEEEEECS
T ss_pred hhhh---------HHHHHhcccCcEEEEEEcC
Confidence 5433 2678999999999998654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.65 E-value=2.5e-05 Score=75.71 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=80.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC--ccceeccccccccC--C-CCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG--LFGIYHDWCESFST--Y-PRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG--lig~~h~wce~f~t--y-PrtyDllHa~~lfS~~ 796 (870)
..|||++||.. . +|.. .+|..+.+|- -+-+++.=.+.++. | +.+||+|.+..+|...
T Consensus 14 ~~vL~~~~g~v----------------~-vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~ 76 (176)
T 2ld4_A 14 QFVAVVWDKSS----------------P-VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST 76 (176)
T ss_dssp SEEEEEECTTS----------------C-HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred CEEEEecCCce----------------e-eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence 55899998851 1 4433 5666666653 23344433344444 3 4899999997777654
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecChhh----------HHHHHHHHHcCCceEEEeecC----C-------------
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------VTEVENFLKSLHWEILFAFSK----D------------- 849 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------~~~~~~~~~~l~W~~~~~~~~----~------------- 849 (870)
. .+...+|-|+-|+|||||+|++.++... ...+...++.-.+ +.+.... .
T Consensus 77 ~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~~g~ 153 (176)
T 2ld4_A 77 T--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREHLGH 153 (176)
T ss_dssp C--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHHTCC
T ss_pred c--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHHhcc
Confidence 1 2457899999999999999999754321 5677788887777 4433110 0
Q ss_pred --C---ceEEEEEeCCCCCCCC
Q 002884 850 --Q---EGVLSAQKGNWQPDTY 866 (870)
Q Consensus 850 --~---e~iL~~~K~~w~~~~~ 866 (870)
. -.+++++|+-|..+++
T Consensus 154 ~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 154 ESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp CCSSEEEEEEEEECCCSSCCSC
T ss_pred cCCceEEEEEeccCCcccccCC
Confidence 1 3478999998876654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.64 E-value=6.3e-06 Score=83.15 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=62.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceec-cccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYH-DWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h-~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|.++..|.... -+|+-+|.. ..+..+.++. -+-+++ |..+.+ +.+.+||+|.+.+++...
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHHHH
Confidence 469999999999999998875 245555544 5666665552 233333 444322 224789999997776532
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.-++-|+|||||.+|+....
T Consensus 148 ---------~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 148 ---------LCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp ---------CHHHHHTEEEEEEEEEEECS
T ss_pred ---------HHHHHHHcCCCcEEEEEEcC
Confidence 34789999999999998653
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.64 E-value=9.4e-06 Score=85.64 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCCh-------hhHHHHHHHHHHHcCCCc-EEEEc-Cccc-CC-CCC--Cc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAP-------KDEHDAQIQFALERGIPA-ISAVM-GTKR-LQ-FPR--NV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp-------~ml~~A~vq~A~ergl~~-~~~v~-dae~-LP-fpd--~S 531 (870)
++.+|||+|||+|.++..|+.. .|+++|+++ .++..|+.. +...++.. +.++. +... ++ +++ ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n-~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLN-PETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHS-HHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhH-HHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 4679999999999999988865 899999999 777766533 22223322 44444 4333 33 444 78
Q ss_pred eeEEEeccc
Q 002884 532 FDLVHCARC 540 (870)
Q Consensus 532 FDlV~Ss~~ 540 (870)
||+|++...
T Consensus 162 fD~V~~dP~ 170 (258)
T 2r6z_A 162 PDIVYLDPM 170 (258)
T ss_dssp CSEEEECCC
T ss_pred ccEEEECCC
Confidence 999999753
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=86.52 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCchhHHHH---hcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYL---FER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~L---a~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~ 536 (870)
...+|||||||+|-+.... ..+ +|++|+-++. ...+.. .....+.. .+.++.+ .+.+.+| +.+|+|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~-~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLE-NWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHH-HHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHH-HHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 3458999999999763222 222 6899999984 444443 33444443 3444444 5666655 5699999
Q ss_pred ec---ccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 537 CA---RCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 537 Ss---~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
|= .+++. +--..+|....|.|||||.++
T Consensus 434 SEwMG~fLl~--E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADN--ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGG--GCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccc--cCCHHHHHHHHHhcCCCcEEc
Confidence 83 12122 223468888899999999987
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=79.62 Aligned_cols=126 Identities=10% Similarity=0.190 Sum_probs=71.0
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHh----hCccceec-ccccc--ccCCCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYE----RGLFGIYH-DWCES--FSTYPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~e----RGlig~~h-~wce~--f~tyPrtyDllHa~ 790 (870)
..|||+|||.|.++.+|.+. .|+.+-+.| ..+..+.+ +.-+-+++ |..+. +...+.+||+|.++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 46999999999999998754 233333222 22222211 11122333 44432 12345789998874
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecCh---------h-h-HHHHHHHHHcCCceEEEeec----CCCceEEE
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------S-A-VTEVENFLKSLHWEILFAFS----KDQEGVLS 855 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------~-~-~~~~~~~~~~l~W~~~~~~~----~~~e~iL~ 855 (870)
.. ..-....+|.++-|+|||||++++.-.. . + ...+..+ ..- +++..... ....-+++
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~ 223 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFV 223 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEE
Confidence 33 1112234599999999999999985211 0 1 2455665 444 77654321 12345777
Q ss_pred EEeC
Q 002884 856 AQKG 859 (870)
Q Consensus 856 ~~K~ 859 (870)
++|+
T Consensus 224 ~~~~ 227 (227)
T 1g8a_A 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7763
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.6e-05 Score=79.97 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=73.4
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cccc---eec-cccccccCCC-Cccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GLFG---IYH-DWCESFSTYP-RSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Glig---~~h-~wce~f~tyP-rtyDllH 788 (870)
-..|||+|||.|.++.+|+.. .. .|+-+|.. ..+..+.++ |+.. +++ |+.+. +| .+||+|.
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~v~ 167 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG---IEEENVDHVI 167 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC---CCCCSEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc---cCCCCcCEEE
Confidence 346999999999999999876 33 33444544 555555554 6543 333 45543 44 6899987
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCC--ceE
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLH--WEI 842 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~--W~~ 842 (870)
+ +-.....+|-++-|+|||||.+++..+ .+....+...++... |..
T Consensus 168 ~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 168 L--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp E--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSC
T ss_pred E--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 6 222445689999999999999998764 455667777777766 643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.3e-05 Score=80.07 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred ccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh-----Cc--cceec-cccccccCCC-Cccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER-----GL--FGIYH-DWCESFSTYP-RSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR-----Gl--ig~~h-~wce~f~tyP-rtyDllH 788 (870)
-..|||+|||.|.++.+|+.. .. +|+-+|.. ..+..+.++ |. +-+++ |+.+. ++| .+||+|.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v~ 171 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGVA 171 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEEE
Confidence 357999999999999999865 33 34444543 555555554 52 33333 44432 355 6899987
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh-hHHHHHHHHHcCCceE
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS-AVTEVENFLKSLHWEI 842 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~-~~~~~~~~~~~l~W~~ 842 (870)
++ --....+|.++-|+|||||.+++..+.. .+.++...++...|..
T Consensus 172 ~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 172 LD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 62 1234578999999999999999987654 5566666666666654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=76.29 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCC--ceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRN--VFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~--SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+++ +|+++|+++.|+..+... ......+ ..+...+++++. .| .|+++
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-----~~~~v~~i~~D~~~~~~~~~~~~~-~vv~N- 102 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-----GDERLEVINEDASKFPFCSLGKEL-KVVGN- 102 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-----CCTTEEEECSCTTTCCGGGSCSSE-EEEEE-
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-----cCCCeEEEEcchhhCChhHccCCc-EEEEE-
Confidence 35789999999999999999875 799999999987766532 2223344 445677777642 23 56665
Q ss_pred cccccccChHHHHHHHHhhc--CCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVL--RPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVL--KPGG~Lv~S 568 (870)
++|.. ...++..+.+.. -+.+++++.
T Consensus 103 --lPy~i-~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 103 --LPYNV-ASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp --CCTTT-HHHHHHHHHHTGGGCSEEEEEEE
T ss_pred --Cchhc-cHHHHHHHHhcCCCCceEEEEEe
Confidence 45543 233444444332 344555554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.60 E-value=3.2e-05 Score=78.72 Aligned_cols=129 Identities=9% Similarity=0.073 Sum_probs=71.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Ccccee-ccccccc--cCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLFGIY-HDWCESF--STYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Glig~~-h~wce~f--~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|++. +- -.|+-+|.. ..+..+.++ .-+-.+ .|..+.. ..++.+||+|..+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~--- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED--- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC---
T ss_pred CEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe---
Confidence 46999999999999999765 31 123333433 344333332 112222 2333211 2334789997521
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe----cChh-------hHHHHHHHHHcCCceEEEeecC----CCceEEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR----DEPS-------AVTEVENFLKSLHWEILFAFSK----DQEGVLSAQK 858 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir----d~~~-------~~~~~~~~~~~l~W~~~~~~~~----~~e~iL~~~K 858 (870)
....-....+|.++-|+|||||++++. .... ....++ ++....+++.....- ....+++++|
T Consensus 151 --~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 151 --VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp --CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred --cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 111111256799999999999999994 1110 125566 666666765433111 2346788887
Q ss_pred C
Q 002884 859 G 859 (870)
Q Consensus 859 ~ 859 (870)
+
T Consensus 228 ~ 228 (230)
T 1fbn_A 228 E 228 (230)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=82.26 Aligned_cols=120 Identities=15% Similarity=0.010 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc-------CCEEEEeCChhhHHHHHHHHHHHcCCC--cEEE-Ec
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE-------RDVLTMSFAPKDEHDAQIQFALERGIP--AISA-VM 520 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~-------r~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~-v~ 520 (870)
..++|.+.+.......++.+|||.+||+|.|...+.. ..++|+|+++.+...|+.... .+|+. ...+ ..
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~-l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI-LHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH-HTTCCGGGEEEEES
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH-HcCCCcCccceEec
Confidence 3455555544211123577999999999987765543 279999999998888775544 35652 3333 33
Q ss_pred CcccC--C-CCCCceeEEEecccc-ccccc------C---------------hHHHHHHHHhhcC-CCcEEEEEECC
Q 002884 521 GTKRL--Q-FPRNVFDLVHCARCR-VPWHI------D---------------GGKLLLELNRVLR-PGGYFVWSATP 571 (870)
Q Consensus 521 dae~L--P-fpd~SFDlV~Ss~~a-lhw~~------D---------------~~~vL~Ei~RVLK-PGG~Lv~S~~p 571 (870)
+.... | +....||+|+++.-. ..|.. + .-.++..+.+.|+ |||++.+..+.
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 44333 4 456789999997321 12210 0 1247899999999 99999887443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=1.1e-05 Score=90.68 Aligned_cols=110 Identities=12% Similarity=0.222 Sum_probs=72.2
Q ss_pred cccccccccc------chhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCC------CCcc
Q 002884 722 VRNVMDMRAV------YGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTY------PRSY 784 (870)
Q Consensus 722 ~RnvmDm~ag------~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~ty------Prty 784 (870)
-.+|||+||| +||.+..|... .|+.+-+.|. +. +...-|-++..=++.+++- +.+|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~----m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sF 289 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK----SH---VDELRIRTIQGDQNDAEFLDRIARRYGPF 289 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC----GG---GCBTTEEEEECCTTCHHHHHHHHHHHCCE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH----Hh---hcCCCcEEEEecccccchhhhhhcccCCc
Confidence 4689999999 78877777543 3444444443 21 1112233444333443322 4799
Q ss_pred chhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC------------------hhhHHHHHHHHHcCCceE
Q 002884 785 DLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE------------------PSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 785 DllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~------------------~~~~~~~~~~~~~l~W~~ 842 (870)
|+|.+++.. + -......|.|+-|+|||||+|||.|- ..++..++.++..|+|.-
T Consensus 290 DlVisdgsH--~--~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 290 DIVIDDGSH--I--NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp EEEEECSCC--C--HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred cEEEECCcc--c--chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence 999987532 1 13456789999999999999999752 245789999999998864
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=97.58 E-value=1.2e-05 Score=82.92 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=65.5
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh-------Cc-------------------------
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER-------GL------------------------- 766 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR-------Gl------------------------- 766 (870)
..|||+|||.|.|+..|... +- .+|+-+|.. ..+.++.++ |+
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~--~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSL--RQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGE--EEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCC--CeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 46999999999999998765 22 356666654 555544421 33
Q ss_pred ---cc-------------eec-cccccccC----CCCccchhhhhcccccccC------CcChhhHHHhhhhcccCCcEE
Q 002884 767 ---FG-------------IYH-DWCESFST----YPRSYDLLHADHLFSQLKN------RCKLVPVMAEVDRIVRPGGKL 819 (870)
Q Consensus 767 ---ig-------------~~h-~wce~f~t----yPrtyDllHa~~lfS~~~~------rc~~~~vl~EmDRILRPgG~~ 819 (870)
+- +++ |+.+.+.. -...||+|-++-.|..... .-....+|.++-|+|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 22 333 55543211 2248999998765543322 122347899999999999999
Q ss_pred EEecCh
Q 002884 820 IVRDEP 825 (870)
Q Consensus 820 iird~~ 825 (870)
+|.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 997654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.3e-05 Score=81.91 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=77.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-----Cc-----------cceec-cccccccCCCCc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-----GL-----------FGIYH-DWCESFSTYPRS 783 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-----Gl-----------ig~~h-~wce~f~tyPrt 783 (870)
-++|||+|||.|+++.+|+..++ .+|+-++.. ..+.++.++ |+ +-+++ |..+-+.. +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 36799999999999999988754 344444443 444444433 33 22333 22221222 788
Q ss_pred cchhhhhcccccccCCc-ChhhHHHhhhhcccCCcEEEEec-----ChhhHHHHHHHHHcCCceEEEee----c-CCCce
Q 002884 784 YDLLHADHLFSQLKNRC-KLVPVMAEVDRIVRPGGKLIVRD-----EPSAVTEVENFLKSLHWEILFAF----S-KDQEG 852 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc-~~~~vl~EmDRILRPgG~~iird-----~~~~~~~~~~~~~~l~W~~~~~~----~-~~~e~ 852 (870)
||+|.++.......... ....++-++-|+|+|||.+++.. ....+..+...++..--.+.... . ...-.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~ 232 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWA 232 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEE
Confidence 99998854321111001 12468899999999999999962 22334444444444433333321 1 23456
Q ss_pred EEEEEeC
Q 002884 853 VLSAQKG 859 (870)
Q Consensus 853 iL~~~K~ 859 (870)
+++|.|.
T Consensus 233 ~~~as~~ 239 (281)
T 1mjf_A 233 FLVGVKG 239 (281)
T ss_dssp EEEEEES
T ss_pred EEEeeCC
Confidence 8888886
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.58 E-value=1.1e-05 Score=83.54 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=61.2
Q ss_pred ccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhccccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
-..|||+|||.|.++..|.+. +. .|+-+|.. ..+..+.+++- +-++..-.+.++.-+.+||+|.+.+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-----
Confidence 346999999999999999876 43 34445544 67777777762 22222222333322379999987433
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
...|.|+.|+|||||.+++..+
T Consensus 158 -----~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 -----PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp -----CCCHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhhHHHHHHhcCCCcEEEEEEc
Confidence 2368999999999999999864
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=84.12 Aligned_cols=105 Identities=10% Similarity=-0.058 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC-------CEEEEeCChhhHHHHHHHHHHH-----cCCCcEEEEcCc-ccC-CCCCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-------DVLTMSFAPKDEHDAQIQFALE-----RGIPAISAVMGT-KRL-QFPRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-------~VtgVDiSp~ml~~A~vq~A~e-----rgl~~~~~v~da-e~L-Pfpd~SF 532 (870)
++.+|||.|||+|.++..++.. .++|+|+++.++..|..+.... .++.......++ ..+ +.....|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 4679999999999988877653 5899999999887773333222 233332333332 221 2345789
Q ss_pred eEEEecccccc-ccc--------------------------C-hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVP-WHI--------------------------D-GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alh-w~~--------------------------D-~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+++.-... +.. + ...++..+.+.|+|||++++..+.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 99999853211 100 0 124677899999999999988544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=84.53 Aligned_cols=102 Identities=18% Similarity=0.075 Sum_probs=68.5
Q ss_pred CEEEEECCCCchhHHHHh-------------------cCCEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcCcccC-C
Q 002884 469 RVSLDVGCGVASFGGYLF-------------------ERDVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMGTKRL-Q 526 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La-------------------~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~dae~L-P 526 (870)
.+|||.+||+|.|...++ ...++|+|+++.++..|...... +|+...+ ...+.... .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-RGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-TTCCCBCCSSSCCTTTSCS
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-hCCCcccceeccchhcCcc
Confidence 499999999998776542 23799999999988888755443 4554332 22232222 3
Q ss_pred CCCCceeEEEeccccc--ccccC--------------------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 527 FPRNVFDLVHCARCRV--PWHID--------------------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 527 fpd~SFDlV~Ss~~al--hw~~D--------------------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
++...||+|+++.-.. .|..+ .-.+|..+.+.|+|||++++..+.
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 5567899999974211 12110 026789999999999999887543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.1e-05 Score=80.53 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHH----hhCc---cceec-cccccccCC------CC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIY----ERGL---FGIYH-DWCESFSTY------PR 782 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~----eRGl---ig~~h-~wce~f~ty------Pr 782 (870)
.-++|||+|||.|.++..|+.. +. .|+-+|.. ..+.++. ..|+ |-+++ |..+.+..+ +.
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 3468999999999999888753 22 23333432 3444433 3465 33444 333333333 57
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+||+|.+++-. -....+|-++-|+|||||.+|+.+
T Consensus 156 ~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 156 SYDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CBSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CEEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 89998775421 245678899999999999999875
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.52 E-value=3e-05 Score=83.66 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||||||.|+++.+|++. +- -.|+-+|.. ..+..+.++ |+ +-+++.-...+..++.+||+|.++--.
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence 46999999999999998753 11 124455554 555555544 65 334443334444456789999875332
Q ss_pred cccc---CC---------cC-------hhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHcCCceE
Q 002884 794 SQLK---NR---------CK-------LVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 794 S~~~---~r---------c~-------~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~l~W~~ 842 (870)
|... .. -. ...+|.++-|+|||||.+|+.. +.+....++.+++...++.
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 2110 00 00 1378999999999999999953 2344456677777666544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=77.83 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
++++.++.+...+ . + ..++.+||||||++|.|+.++++. .|+|+|+...+...+.. ....+.+.+.+..
T Consensus 64 SRaa~KL~ei~ek--~-l--~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~ 136 (300)
T 3eld_A 64 SRGAAKIRWLHER--G-Y--LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKD 136 (300)
T ss_dssp STTHHHHHHHHHH--T-S--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEEC
T ss_pred chHHHHHHHHHHh--C-C--CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeec
Confidence 4555555554444 2 1 246889999999999999999974 67888887532100000 0000122333333
Q ss_pred CcccCCCCCCceeEEEeccccccccc----Ch---HHHHHHHHhhcCCC-cEEEEEE
Q 002884 521 GTKRLQFPRNVFDLVHCARCRVPWHI----DG---GKLLLELNRVLRPG-GYFVWSA 569 (870)
Q Consensus 521 dae~LPfpd~SFDlV~Ss~~alhw~~----D~---~~vL~Ei~RVLKPG-G~Lv~S~ 569 (870)
+....-+....||+|+|.. +-+ .. |. ..+|.-+.++|+|| |.|++-.
T Consensus 137 ~~di~~l~~~~~DlVlsD~-APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 137 KSNVFTMPTEPSDTLLCDI-GES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp SCCTTTSCCCCCSEEEECC-CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CceeeecCCCCcCEEeecC-cCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3333345667899999963 233 21 11 24566678999999 9999973
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.4e-05 Score=81.63 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=69.0
Q ss_pred cccccccccccc---hhHHhhhcCC--CeEEEEeccCCC-CCChhHHHhh----Cccceec-cccccc---------cCC
Q 002884 721 NVRNVMDMRAVY---GGFAAALKDL--QVWVMNVVNVNS-PDTLPIIYER----GLFGIYH-DWCESF---------STY 780 (870)
Q Consensus 721 ~~RnvmDm~ag~---GgfaaaL~~~--~vwvmNvvp~~~-~~tl~~i~eR----Glig~~h-~wce~f---------~ty 780 (870)
.++.|||+|||+ |.++..+... +. .|+-+|. +.+|..+.++ +-+.+++ |..+.- ..+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 468899999999 9887666432 22 3455555 3666665554 2333333 333210 134
Q ss_pred C-CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 781 P-RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 781 P-rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
| .+||+|-+.++|-.+... ....+|-++-|+|||||+|+|.+..
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4 489999888888776654 6778999999999999999999754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=82.24 Aligned_cols=71 Identities=11% Similarity=-0.010 Sum_probs=53.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHc--CCCcEEEEcC-ccc-CCC-CCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALER--GIPAISAVMG-TKR-LQF-PRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~er--gl~~~~~v~d-ae~-LPf-pd~SFDlV~Ss 538 (870)
++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.+. ... |+..+.++.+ ... ++. ++++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~-~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNI-PLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhH-HHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999988875 8999999999999887544 333 6555555554 333 332 34579999995
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.6e-05 Score=76.72 Aligned_cols=106 Identities=10% Similarity=0.148 Sum_probs=71.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+..+ ..|+-+|.. ..+..+.++ |+ +-+++ |+.+.+ .-+..||+|-++
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~--- 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVD--- 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEEC---
T ss_pred CEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEEC---
Confidence 469999999999999998763 355666654 566666554 44 33333 344422 013689998761
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCce
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWE 841 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~ 841 (870)
-.....+|.++-|+|||||.+++..+. ..+..+...++.. |.
T Consensus 166 -----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 166 -----VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp -----SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred -----CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 124557899999999999999998773 4556666666554 54
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.46 E-value=4.3e-05 Score=92.24 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=71.3
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----------Cc--cceeccccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----------GL--FGIYHDWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----------Gl--ig~~h~wce~f~tyPrtyDllH 788 (870)
-..|||+|||.|.++.+|+..+--.-.|+-+|-. ..+..+.+| |+ +-+++.-.+.++..+.+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 3569999999999999999875111255566654 666666552 54 4455543444454458999999
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+.++|.++.. -....+|-+|-|+|||| ++||..+
T Consensus 802 ~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 802 CLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9988887653 12335889999999999 8888754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.9e-05 Score=79.99 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=60.4
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHH----HhhCc---cceec-cccccccCC------CC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPII----YERGL---FGIYH-DWCESFSTY------PR 782 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i----~eRGl---ig~~h-~wce~f~ty------Pr 782 (870)
.-++|||+|||.|..+.+|+.. +. .|+-+|.. ..+.++ ...|+ |-+++ |..+.+..+ +.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 3568999999999999888653 22 23333332 334433 33466 33443 444433334 47
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+||+|.+++-- -....+|-++-|+|||||.+++.+
T Consensus 147 ~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 89998775321 134578899999999999999975
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.45 E-value=2.8e-05 Score=77.97 Aligned_cols=126 Identities=10% Similarity=0.051 Sum_probs=75.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccCC-CCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFSTY-PRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~ty-PrtyDllHa~~lfS 794 (870)
..|||+|||+|.++.+|+..+. -.|+-+|.. ..+..+.+ .|+ +-+++.-++.+..+ +.+||+|-++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 4699999999999998766653 256667765 56655543 344 44454322333333 47999998876654
Q ss_pred cccCCcChhhHHHhhh--hcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 795 QLKNRCKLVPVMAEVD--RIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmD--RILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
. -....+|-++- |+|||||.+++....... +.. ..-.|.......-....+.+.+|
T Consensus 134 ~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~ 191 (202)
T 2fpo_A 134 R----GLLEETINLLEDNGWLADEALIYVESEVENG--LPT--VPANWSLHREKVAGQVAYRLYQR 191 (202)
T ss_dssp T----TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred C----CcHHHHHHHHHhcCccCCCcEEEEEECCCcc--ccc--cCCcceEEeeeccCCEEEEEEEE
Confidence 1 23456777774 579999999998654221 000 01257654432334455666554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=8e-06 Score=89.44 Aligned_cols=97 Identities=13% Similarity=0.250 Sum_probs=63.0
Q ss_pred cccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHh-hCccceeccccccccCCCCccchhhhhccccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYE-RGLFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~e-RGlig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
+...+.|||+|||.|.++.+|.+. ++-++ -+|.+..+..+.+ .++--+.+|..+ ++|. ||+|.+.++|-.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~-~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLPQVIENAPPLSGIEHVGGDMFA---SVPQ-GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHTTCCCCTTEEEEECCTTT---CCCC-EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEE---EeChHHHHHhhhhcCCCEEEeCCccc---CCCC-CCEEEEeccccc
Confidence 455678999999999999999765 33222 1121222221111 122223335544 4566 999999888866
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+... ....+|-++-|+|||||.+||.|
T Consensus 280 ~~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 WSDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 5431 22379999999999999999985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00012 Score=77.58 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=80.3
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceeccccccc-cCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYHDWCESF-STYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h~wce~f-~tyPrtyDllH 788 (870)
-++|||+|||.|+++.+|+.. ++- .|+-++.. ..+.++.+. |+ +-+++.=+..+ ...+.+||+|-
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 578999999999999999887 552 23333332 344443332 22 33444322222 22358999998
Q ss_pred hhcccccccC-CcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEee------cCCCceEEEE
Q 002884 789 ADHLFSQLKN-RCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAF------SKDQEGVLSA 856 (870)
Q Consensus 789 a~~lfS~~~~-rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~------~~~~e~iL~~ 856 (870)
++........ ......++-++-|+|+|||.+++... ...+..+...+++.--.+.... ....-.+++|
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~a 233 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIG 233 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEe
Confidence 8543321110 11124688999999999999999732 2334555555555533443321 1234568889
Q ss_pred EeCC
Q 002884 857 QKGN 860 (870)
Q Consensus 857 ~K~~ 860 (870)
.|.+
T Consensus 234 sk~~ 237 (275)
T 1iy9_A 234 SKKY 237 (275)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=1e-05 Score=81.54 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=56.6
Q ss_pred cccccccccchhHHhhhcCC-C--eEEEEeccCCCC-CChhHHHhh----Cc-------cceec-cccccccCCCCccch
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSP-DTLPIIYER----GL-------FGIYH-DWCESFSTYPRSYDL 786 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~-~tl~~i~eR----Gl-------ig~~h-~wce~f~tyPrtyDl 786 (870)
..|||+|||.|++++.|... + . .|+-+|.. ..+..+.++ |+ +-+++ |..+. ..-+..||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC-cccCCCcCE
Confidence 46999999999999998754 1 2 33334433 444444332 21 33333 34322 122468999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
||++..+ ..++-++-|+|||||.+++.-.
T Consensus 155 i~~~~~~---------~~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAA---------PVVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBB---------SSCCHHHHHTEEEEEEEEEEES
T ss_pred EEECCch---------HHHHHHHHHhcCCCcEEEEEEe
Confidence 9986554 2356788999999999999753
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8.4e-05 Score=79.54 Aligned_cols=137 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceec-cccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h-~wce~f~tyPrtyDllH 788 (870)
-++|||+|||.|+++.+|++. ++ ..|+-+|.. ..+.++.++ |+ +-+++ |..+.+...+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 368999999999999999987 44 244444443 444444332 22 33333 33222233468899998
Q ss_pred hhcccccccCC--cChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEee------cCCCceEEE
Q 002884 789 ADHLFSQLKNR--CKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAF------SKDQEGVLS 855 (870)
Q Consensus 789 a~~lfS~~~~r--c~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~------~~~~e~iL~ 855 (870)
++......... -....++-++-|+|+|||.+++.-. ......+...+++.--.+.... ....-.+++
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 75321101100 0125688999999999999999732 2223344444444333343321 123457889
Q ss_pred EEeCC
Q 002884 856 AQKGN 860 (870)
Q Consensus 856 ~~K~~ 860 (870)
|.|.+
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 99874
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.43 E-value=3e-05 Score=84.57 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=75.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc----cceeccccccccCC----CCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL----FGIYHDWCESFSTY----PRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl----ig~~h~wce~f~ty----PrtyDllHa 789 (870)
..|||+|||+|+|+.+|+..+. .|+-+|.. ..+..+.++ |+ +-+++.-+..+... ..+||+|-+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4699999999999999998875 66777765 555555443 54 33444323333322 468999877
Q ss_pred hcc-cccccC------CcChhhHHHhhhhcccCCcEEEEecC-------hhhHHHHHHHHHcCCceEE
Q 002884 790 DHL-FSQLKN------RCKLVPVMAEVDRIVRPGGKLIVRDE-------PSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 790 ~~l-fS~~~~------rc~~~~vl~EmDRILRPgG~~iird~-------~~~~~~~~~~~~~l~W~~~ 843 (870)
+-- |..... .-.+..+|.++-|+|+|||+|++... ......++..++.+.+++.
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 433 221110 01245789999999999999887632 1234555556667777665
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.1e-05 Score=80.33 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=79.6
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC----------ccceeccccccccC--CCCccchh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG----------LFGIYHDWCESFST--YPRSYDLL 787 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG----------lig~~h~wce~f~t--yPrtyDll 787 (870)
-++|||+|||.|+++..|++. ++ ..|+-+|.. ..+.++.++- -+-+++.-...+.. -+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 467999999999999999876 33 233334433 3444443321 13334422222222 25799999
Q ss_pred hhhcccccccCCcC-hhhHHHhhhhcccCCcEEEEecCh-----hhHHHHHHHHHcCCceEEEeec-------CCCceEE
Q 002884 788 HADHLFSQLKNRCK-LVPVMAEVDRIVRPGGKLIVRDEP-----SAVTEVENFLKSLHWEILFAFS-------KDQEGVL 854 (870)
Q Consensus 788 Ha~~lfS~~~~rc~-~~~vl~EmDRILRPgG~~iird~~-----~~~~~~~~~~~~l~W~~~~~~~-------~~~e~iL 854 (870)
-++........... -..++-++-|+|||||.+++.... .....+...++...+.....+. ...-.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 88544322111111 146889999999999999996432 3456666777776665432221 2334688
Q ss_pred EEEeC
Q 002884 855 SAQKG 859 (870)
Q Consensus 855 ~~~K~ 859 (870)
+|.|.
T Consensus 254 ~as~~ 258 (304)
T 3bwc_A 254 VCSKK 258 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88885
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.42 E-value=7.9e-05 Score=77.92 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=73.9
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCC-Cccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYP-RSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyP-rtyDllHa 789 (870)
..|||+|||.|.++.+|+.. .. +|+-+|.. ..+..+.++ |+ +-+++ |+++. +| .+||+|-+
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V~~ 187 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDALFL 187 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEEEE
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEEEE
Confidence 46999999999999998765 23 45555653 566665554 54 33333 44443 44 68999876
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~ 843 (870)
+ --....+|-++-|+|+|||.+++.... ..+..+...++...|...
T Consensus 188 ~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 188 D--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234 (277)
T ss_dssp C--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEE
T ss_pred C--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 2 123446899999999999999998774 456677777777777653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.42 E-value=3.7e-05 Score=81.05 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=68.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|+|+..|+.. +- ..|+-+|.. ..+..+.+ .|+ +-+++.-++.+ ..+.+||+|-++...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~--~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKP--KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS-
T ss_pred CEEEEecCcCCHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc-
Confidence 46999999999999998765 20 123333432 33333322 344 22444333333 336789998775433
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChh------hH-HHHHHHHHcCCceEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS------AV-TEVENFLKSLHWEIL 843 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~------~~-~~~~~~~~~l~W~~~ 843 (870)
....+|.++-|+|+|||.+++..... .. ..++.+...+.+.+.
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 55678999999999999999996432 33 344555555555554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.7e-05 Score=80.16 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=35.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQ 506 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq 506 (870)
.++.+|||+|||+|.++..|+.+ .|+|+|+++.|+..|+.+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~ 69 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 45789999999999999888753 799999999999887743
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=1.4e-05 Score=85.28 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=55.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC---CChhHHHhhCc-ccee--c-cccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP---DTLPIIYERGL-FGIY--H-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~---~tl~~i~eRGl-ig~~--h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|+|+..|+++ .|.-+-+.|.... +.+. ....|. +-++ . |. +.++ +.+||+|-|+..+.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~-~~~~~~~v~~~~~~~D~-~~l~--~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRL-VETFGWNLITFKSKVDV-TKME--PFQADTVLCDIGES 159 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCCTTGGGEEEECSCCG-GGCC--CCCCSEEEECCCCC
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhh-hhhcCCCeEEEeccCcH-hhCC--CCCcCEEEECCCcC
Confidence 46999999999999999876 4666666663100 0000 000011 1222 1 22 2222 58999998865422
Q ss_pred cccCC---cChhhHHHhhhhcccCCc--EEEEe
Q 002884 795 QLKNR---CKLVPVMAEVDRIVRPGG--KLIVR 822 (870)
Q Consensus 795 ~~~~r---c~~~~vl~EmDRILRPgG--~~iir 822 (870)
..... -....+|-++.|+||||| .|++.
T Consensus 160 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 160 NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 11100 000127889999999999 99885
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=8.8e-05 Score=80.47 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=80.2
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceec-cccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h-~wce~f~tyPrtyDllH 788 (870)
-++|||+|||.|+++.+|... ++ ..|+-+|.. ..+.++.++ |+ +-+++ |+.+.+...+.+||+|-
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 367999999999999999887 44 244444443 455554433 22 33333 33332223368999998
Q ss_pred hhccccccc-CC-cChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEee------cCCCceEEE
Q 002884 789 ADHLFSQLK-NR-CKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAF------SKDQEGVLS 855 (870)
Q Consensus 789 a~~lfS~~~-~r-c~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~------~~~~e~iL~ 855 (870)
++. +.... .. ..-..++-++-|+|+|||.+++... .+.+..+...++..--.+.... ....-.+++
T Consensus 195 ~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 195 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 753 22111 10 1115688999999999999999632 2334455555555544444321 112235788
Q ss_pred EEeCC
Q 002884 856 AQKGN 860 (870)
Q Consensus 856 ~~K~~ 860 (870)
|.|.+
T Consensus 274 as~~~ 278 (321)
T 2pt6_A 274 CSKTD 278 (321)
T ss_dssp EESST
T ss_pred eeCCC
Confidence 88875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.37 E-value=8.3e-05 Score=77.28 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=68.7
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh-----C-c---cceec-cccccccCC-CCccchh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER-----G-L---FGIYH-DWCESFSTY-PRSYDLL 787 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR-----G-l---ig~~h-~wce~f~ty-PrtyDll 787 (870)
..|||+|||.|.++.+|+.. .. .|+-+|.. ..+..+.++ | + +-+++ |.++. .+ +.+||+|
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~~~~D~v 175 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSVDRA 175 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCCCceeEE
Confidence 46999999999999999864 33 44555554 555555544 4 2 33333 34332 24 4789998
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHc-CCce
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKS-LHWE 841 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~-l~W~ 841 (870)
-++ -.....+|.++-|+|||||++++..+. ..+..+...++. ..|.
T Consensus 176 ~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 176 VLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 762 124557899999999999999997653 444455444444 5554
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.37 E-value=4.3e-05 Score=83.54 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceec-cccccccCCC-Cccchh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYH-DWCESFSTYP-RSYDLL 787 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h-~wce~f~tyP-rtyDll 787 (870)
-++|||+|||.|+++..|+.. ++ ..|+-++.. ..+.++.++ |+ +-+++ |+.+-+..++ .+||+|
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 478999999999999999987 34 244445543 445444432 33 33444 4444333454 799999
Q ss_pred hhhcccccccCCcC-hhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADHLFSQLKNRCK-LVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~lfS~~~~rc~-~~~vl~EmDRILRPgG~~iir 822 (870)
-++........... ...++-++-|+|||||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 88542111111111 246889999999999999996
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=66.70 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=61.2
Q ss_pred CCEEEEECCCCchhHHHHh---cCCEEEEeCChhhHHHHHHHHHHHcCC---CcEEEEcC-cc-c--------------C
Q 002884 468 TRVSLDVGCGVASFGGYLF---ERDVLTMSFAPKDEHDAQIQFALERGI---PAISAVMG-TK-R--------------L 525 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La---~r~VtgVDiSp~ml~~A~vq~A~ergl---~~~~~v~d-ae-~--------------L 525 (870)
.++||++|||. -+..|+ ..+|+++|.++.....|+..++ ..|+ ..+.++.+ +. . +
T Consensus 31 a~~VLEiGtGy--STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGSGG--STVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESCSH--HHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECchH--HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 67999999964 344443 3489999999998888775444 4454 33434433 21 1 2
Q ss_pred C--------C-CCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 526 Q--------F-PRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 P--------f-pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ . ..++||+|+.-. .....++..+.+.|+|||++++-
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg------~k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG------RFRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS------SSHHHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeC------CCchhHHHHHHHhcCCCeEEEEe
Confidence 2 2 237899999852 12246677788999999999774
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=79.92 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=74.8
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceec-cccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h-~wce~f~tyPrtyDllH 788 (870)
-++|||+|||.|+++.+|+.. ++ ..|+-++.. ..+.++.++ |+ +-+++ |..+.+..-+.+||+|-
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 468999999999999999877 33 344445543 444444433 33 23333 33222222357899998
Q ss_pred hhccccccc-CCcCh-hhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEee----c-CCCc-eEEE
Q 002884 789 ADHLFSQLK-NRCKL-VPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAF----S-KDQE-GVLS 855 (870)
Q Consensus 789 a~~lfS~~~-~rc~~-~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~----~-~~~e-~iL~ 855 (870)
++.. .... ..-.. ..++-++-|+|||||.+++... ......+...++.+--.+.... . .... ++++
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ 265 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEE
Confidence 7542 2111 11111 5688999999999999999742 2233444444444433333221 1 1123 6888
Q ss_pred EEeC
Q 002884 856 AQKG 859 (870)
Q Consensus 856 ~~K~ 859 (870)
|.|.
T Consensus 266 ask~ 269 (314)
T 2b2c_A 266 CAKN 269 (314)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8876
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.34 E-value=2.5e-05 Score=89.42 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=63.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhH----HHhhCc---cceec-cccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPI----IYERGL---FGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~----i~eRGl---ig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|+..+. ..|+-+|....+.. +...|| +-+++ |+.+ + .+|..||+|-++.++.
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMGY 235 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTC--SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCHH
T ss_pred CEEEEecCcccHHHHHHHHcCC--CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCchH
Confidence 5799999999999999987753 13333343323333 334466 44555 3433 2 4578999999977765
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.... -.+...|.++-|+|+|||++++.
T Consensus 236 ~~~~-e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 236 MLFN-ERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHTC-HHHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCc-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 4432 13455778999999999999853
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=3.3e-05 Score=84.81 Aligned_cols=95 Identities=13% Similarity=0.238 Sum_probs=62.8
Q ss_pred cccccccccccccchhHHhhhcCC--C--eEEEEeccCCCCCChhHHHhh-CccceeccccccccCCCCccchhhhhccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL--Q--VWVMNVVNVNSPDTLPIIYER-GLFGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~--~--vwvmNvvp~~~~~tl~~i~eR-Glig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
|...+.|||+|||.|.++.+|.+. + +.+.-+ +..+..+.++ ++--+.+|..+ ++|.. |+|.+.+++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~---~~p~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-----PHVIQDAPAFSGVEHLGGDMFD---GVPKG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-----HHHHHhhhhcCCCEEEecCCCC---CCCCC-CEEEEechh
Confidence 566788999999999999999763 3 333333 2222222122 22223335544 56655 999888887
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-.+... ....+|-++-|+|||||.++|.|
T Consensus 272 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDWSDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGBCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 665431 23468999999999999999975
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.28 E-value=3.7e-05 Score=76.66 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred cccccccccchhHHhhhcCCC---eEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
..|||+|||.|.+++.|.... . .|+-+|.. ..+..+.++ |+ +-+++ |..+.+. -+.+||+|.+.+
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 469999999999999987642 2 23334433 455555443 43 22233 3322211 136899999977
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.+.... -++-|+|||||.+++.-..
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 665322 4889999999999998654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.28 E-value=6.3e-05 Score=78.61 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=62.6
Q ss_pred cccccccccccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCc-cceeccccccccCCC---Cccc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGL-FGIYHDWCESFSTYP---RSYD 785 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGl-ig~~h~wce~f~tyP---rtyD 785 (870)
|.+..+.. |||+|||.|.|+.+|++. .|..+.+.|.-...-...+.+++. ..+..+-+.. ..|| .++|
T Consensus 73 l~ikpG~~--VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p-~~~~~~~~~vD 149 (233)
T 4df3_A 73 LPVKEGDR--ILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFP-EKYRHLVEGVD 149 (233)
T ss_dssp CCCCTTCE--EEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCG-GGGTTTCCCEE
T ss_pred cCCCCCCE--EEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCc-cccccccceEE
Confidence 34555544 999999999999999864 266665554322222222334453 3344444433 3333 7888
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+|.++ |. ..-....+|.|+.|+|||||.++|.+
T Consensus 150 vVf~d--~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYAD--VA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEC--CC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEe--cc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 77653 11 11234568999999999999999874
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=4.6e-05 Score=83.66 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=63.1
Q ss_pred cccccccccccccchhHHhhhcCC--C--eEEEEeccCCCCCChhHHHhhC-ccceeccccccccCCCCccchhhhhccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL--Q--VWVMNVVNVNSPDTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~--~--vwvmNvvp~~~~~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
|...+.|||+|||.|.++.+|.+. + +.+.-+ +..+..+.++. +--+.+|..+ ++|.. |+|.+.+++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-----PHVISEAPQFPGVTHVGGDMFK---EVPSG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-----HHHHHhhhhcCCeEEEeCCcCC---CCCCC-CEEEehHHh
Confidence 566788999999999999999763 3 333333 22222222222 2223335544 56654 999888877
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-.+.. -....+|-++-|+|||||+|+|.|
T Consensus 270 h~~~d-~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 270 HDWSD-QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GGSCH-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 66542 134578999999999999999975
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=6.8e-05 Score=81.37 Aligned_cols=96 Identities=13% Similarity=0.211 Sum_probs=64.2
Q ss_pred ccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHh-hCccceeccccccccCCCCccchhhhhcc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYE-RGLFGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~e-RGlig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
.|.....|||+|||.|.++.+|.+. .|.++-+ | ..+..+.+ .++--+.+|..+ ++|. ||+|.+.++
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~ 255 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYI 255 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESC
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccC---CCCC-ccEEEeehh
Confidence 4556688999999999999999854 2444443 2 22221111 122223345544 4564 999999888
Q ss_pred cccccCCcChhhHHHhhhhcccC---CcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRP---GGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRP---gG~~iird 823 (870)
|-.+.+. ....+|-++-|+||| ||+++|.|
T Consensus 256 lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 256 LHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hccCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 8766431 223799999999999 99999985
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00034 Score=73.86 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=59.4
Q ss_pred CCCCCEEEEECCCCchhHHHHh----------------cCCEEEEeCCh---hhHHHHH---------HHHHHHc-----
Q 002884 465 GKYTRVSLDVGCGVASFGGYLF----------------ERDVLTMSFAP---KDEHDAQ---------IQFALER----- 511 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La----------------~r~VtgVDiSp---~ml~~A~---------vq~A~er----- 511 (870)
..+..+|||||||+|..+..+. ..++++++..| .++..+. .+.....
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999997554432 12789999877 4444331 1111111
Q ss_pred ----------CCCcE-EEEcCc-ccCCCCC----CceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEE
Q 002884 512 ----------GIPAI-SAVMGT-KRLQFPR----NVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 512 ----------gl~~~-~~v~da-e~LPfpd----~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
+...+ +...|+ +.+|..+ ..||+|+.-...-.-+++ ...+|..+.|+|||||+|+.
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11122 233333 3355322 279999974211110122 26899999999999999985
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00025 Score=75.02 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=56.3
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHH--HHHc----C-C-CcEEEEcC-cc-cCCCCCCceeEEE
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQF--ALER----G-I-PAISAVMG-TK-RLQFPRNVFDLVH 536 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~--A~er----g-l-~~~~~v~d-ae-~LPfpd~SFDlV~ 536 (870)
.+|||+|||+|..+..|+.+ .|+++|+++.+...+.... +... + + ..+.++.+ .. -++.....||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 79999999999999888764 8999999998644433222 2111 1 2 23444444 32 2443234699999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCc
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGG 563 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG 563 (870)
+... ++. .....++++..++||+.+
T Consensus 170 lDP~-y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPM-FPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCC-CCC-CCC-----HHHHHHHHHS
T ss_pred EcCC-CCC-cccchHHHHHHHHHHHhh
Confidence 9753 333 223456777888888755
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00029 Score=69.76 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=75.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCCCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
..|||+|||.|+++.+|...+. -+|+-+|.. ..+..+.++ |+ +-+++ ..+..+|.+||+|-++.-|...
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEE---CchHHcCCCCCEEEEcCCCccc
Confidence 4699999999999999987753 134455543 455554443 33 22333 3333457799999998777655
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEE
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~ 844 (870)
... ....+|-++-|+| ||.+++. .+......+..++....|++..
T Consensus 126 ~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 126 RKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp STT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 432 3345788888998 6655554 2666778888888888887754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.19 E-value=7.5e-05 Score=80.48 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=55.0
Q ss_pred cccccccccchhHHhhhcCC-C--eEEEEeccCCCC-CChhHHHhh-----------------Cccceec-cccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSP-DTLPIIYER-----------------GLFGIYH-DWCESFSTY 780 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~-~tl~~i~eR-----------------Glig~~h-~wce~f~ty 780 (870)
..|||+|||.|.++.+|+.. + . .|+-+|.. ..+..+.++ .-+-+++ |.++....+
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 46999999999999998764 2 2 23333433 344444332 1133444 454443345
Q ss_pred C-CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 781 P-RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 781 P-rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+ .+||+|.++. .....+|-++-|+|||||.+++...
T Consensus 184 ~~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 184 KSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ----EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5 5899988732 2233478999999999999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=4.6e-05 Score=81.79 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=58.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Ccc--ceec-cccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLF--GIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gli--g~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|....----.|+-++.. ..+..+.++ |+- -+++ |..+ ..+-+..||+|.+++.+.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIFVTVGVD 155 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEECSBBS
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEEEcCCHH
Confidence 469999999999999997652100013333433 555555544 653 3333 3322 222237899999987776
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
... -++-|+|||||.+++....
T Consensus 156 ~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 156 EVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred HHH---------HHHHHhcCCCcEEEEEECC
Confidence 432 5778999999999998543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00024 Score=77.55 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=89.0
Q ss_pred cccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh---C----ccceeccccccccCCCCccchh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER---G----LFGIYHDWCESFSTYPRSYDLL 787 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR---G----lig~~h~wce~f~tyPrtyDll 787 (870)
+.|+..+.|+|+|||.|.++.+|.+. ++-+ +=.|.|..+..+.++ + +--+-||..+. + +..+|++
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~---~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~--~-~~~~D~~ 248 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCKI---TVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD--P-LPEADLY 248 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSCEE---EEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS--C-CCCCSEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCcee---EeccCHHHHHHHHHhhhhcccCceeeecCccccC--C-CCCceEE
Confidence 46788899999999999999999865 3321 122334444444332 1 22223454332 2 2468998
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh--------------h------------hHHHHHHHHHcCCce
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------S------------AVTEVENFLKSLHWE 841 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~--------------~------------~~~~~~~~~~~l~W~ 841 (870)
...+++-.+.+. ....||-++-|.|+|||.++|-|.+ + ...+.+.++..-.|+
T Consensus 249 ~~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~ 327 (353)
T 4a6d_A 249 ILARVLHDWADG-KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR 327 (353)
T ss_dssp EEESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred EeeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 887777665431 2246899999999999999998632 0 135667788888887
Q ss_pred EEEe-ecCCCceEEEEEeCC
Q 002884 842 ILFA-FSKDQEGVLSAQKGN 860 (870)
Q Consensus 842 ~~~~-~~~~~e~iL~~~K~~ 860 (870)
..-. .......+++|+|..
T Consensus 328 ~v~v~~~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 328 DFQFKKTGAIYDAILARKGT 347 (353)
T ss_dssp EEEEECCSSSCEEEEEECCC
T ss_pred eEEEEEcCCceEEEEEEecC
Confidence 6433 334456799999964
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=77.06 Aligned_cols=136 Identities=14% Similarity=0.058 Sum_probs=78.7
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------C-c----cceec-cccccccCCCCccchh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------G-L----FGIYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------G-l----ig~~h-~wce~f~tyPrtyDll 787 (870)
-++|||+|||.|+++..|++. ++ ..|+-++.. ..+.++.++ | + +-+++ |..+-+...+.+||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 468999999999999999887 33 233444433 344443322 2 1 33333 2222122236899999
Q ss_pred hhhcccccccCCcC-----hhhHHHhhhhcccCCcEEEEec------ChhhHHHHHHHHHcCCceEEEee----c-CCCc
Q 002884 788 HADHLFSQLKNRCK-----LVPVMAEVDRIVRPGGKLIVRD------EPSAVTEVENFLKSLHWEILFAF----S-KDQE 851 (870)
Q Consensus 788 Ha~~lfS~~~~rc~-----~~~vl~EmDRILRPgG~~iird------~~~~~~~~~~~~~~l~W~~~~~~----~-~~~e 851 (870)
-++...... ..+. ...++-++-|+|+|||.+++.- ..+....+...++.+--.+.... . ...-
T Consensus 156 i~d~~~~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~ 234 (314)
T 1uir_A 156 IIDLTDPVG-EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (314)
T ss_dssp EEECCCCBS-TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EECCCCccc-ccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeE
Confidence 886433220 0011 3568999999999999999872 12345555555665543443221 1 2234
Q ss_pred eEEEEEeCC
Q 002884 852 GVLSAQKGN 860 (870)
Q Consensus 852 ~iL~~~K~~ 860 (870)
.+++|.|.+
T Consensus 235 ~~~~as~~~ 243 (314)
T 1uir_A 235 GFLLASDAF 243 (314)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 578898863
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00019 Score=77.34 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=75.5
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------Cc----cceecc-ccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------GL----FGIYHD-WCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------Gl----ig~~h~-wce~f~tyPrtyDllH 788 (870)
-++|||+|||.|+++..|++. ++ ..|+-++.. ..+.++.++ |+ +-+++. ..+-+...+.+||+|-
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 478999999999999999887 33 233344433 344444332 33 333432 2221223358999998
Q ss_pred hhcccccccC-CcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe------ecCCCceEEEE
Q 002884 789 ADHLFSQLKN-RCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA------FSKDQEGVLSA 856 (870)
Q Consensus 789 a~~lfS~~~~-rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~~ 856 (870)
++........ .-....++-++-|+|||||.+++... .+....+...++.+-=.+... +....-++++|
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~a 253 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLC 253 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEE
Confidence 7543211100 00123588899999999999998751 223444444444443233222 11223468888
Q ss_pred EeC
Q 002884 857 QKG 859 (870)
Q Consensus 857 ~K~ 859 (870)
.|.
T Consensus 254 s~~ 256 (304)
T 2o07_A 254 SKN 256 (304)
T ss_dssp ESS
T ss_pred eCC
Confidence 886
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=75.37 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=76.2
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh------C----ccceec-cccccccCCCCccchhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER------G----LFGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR------G----lig~~h-~wce~f~tyPrtyDllH 788 (870)
-++|||+|||.|+++..|... ++ ..|+-++.. ..+.++.++ | -+-+++ |..+-....+.+||+|-
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 468999999999999999876 33 234444433 344444332 1 122333 32222222368999998
Q ss_pred hhcccccccCCcCh-hhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe------ecCCCceEEEE
Q 002884 789 ADHLFSQLKNRCKL-VPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA------FSKDQEGVLSA 856 (870)
Q Consensus 789 a~~lfS~~~~rc~~-~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~~ 856 (870)
++.........-.. ..++-++-|+|||||.+++... .+.+..+...++..--.+... +....-++++|
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~ 236 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 236 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEE
Confidence 86432211111111 4688999999999999998842 223344444444443333322 11122357778
Q ss_pred EeC
Q 002884 857 QKG 859 (870)
Q Consensus 857 ~K~ 859 (870)
.|.
T Consensus 237 s~~ 239 (283)
T 2i7c_A 237 SKT 239 (283)
T ss_dssp ESS
T ss_pred eCC
Confidence 776
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0041 Score=69.21 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+++.+||||||++|.++..|.++ .|++||+.+-.- . . ...+.+.++. +...+..+...||+|+|-..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~-~-----l--~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~- 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ-S-----L--MDTGQVTWLREDGFKFRPTRSNISWMVCDMV- 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH-H-----H--HTTTCEEEECSCTTTCCCCSSCEEEEEECCS-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh-h-----h--ccCCCeEEEeCccccccCCCCCcCEEEEcCC-
Confidence 356899999999999999999987 899999886421 1 1 1223444444 44555556678999999642
Q ss_pred cccccChHHHHHHHHhhcCCC
Q 002884 542 VPWHIDGGKLLLELNRVLRPG 562 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPG 562 (870)
.++..++.-+.+.|..|
T Consensus 280 ----~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 ----EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp ----SCHHHHHHHHHHHHHTT
T ss_pred ----CChHHhHHHHHHHHhcc
Confidence 24455555555555544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.14 E-value=2.6e-05 Score=78.61 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=56.9
Q ss_pred cccccccccchhHHhhhcCCCe----EEEEeccCCCC-CChhHHHhh----Cc-------cceec-ccccccc---CCCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV----WVMNVVNVNSP-DTLPIIYER----GL-------FGIYH-DWCESFS---TYPR 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v----wvmNvvp~~~~-~tl~~i~eR----Gl-------ig~~h-~wce~f~---tyPr 782 (870)
..|||+|||.|.+++.|....- =-..|+-+|.. ..+..+.++ |+ +-+++ |..+.+. .-+.
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 4699999999999999876410 00023333433 444444433 42 33333 3333210 1237
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.||+|++.+.+. .++-++-|+|||||.+|+.-.
T Consensus 162 ~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 162 LFDAIHVGASAS---------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CEEEEEECSBBS---------SCCHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEECCchH---------HHHHHHHHhcCCCcEEEEEEc
Confidence 899999866554 356788999999999998854
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00017 Score=76.24 Aligned_cols=118 Identities=10% Similarity=0.029 Sum_probs=71.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCC-C-CChhHHHhh---------Cc-------ccee-ccccccccCC---
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNS-P-DTLPIIYER---------GL-------FGIY-HDWCESFSTY--- 780 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~-~-~tl~~i~eR---------Gl-------ig~~-h~wce~f~ty--- 780 (870)
+.|||+|||.|.++.+|...+. -.|+-+|. . ..+..+.++ |+ +-+. .+|.......
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 4699999999999999887753 23455555 2 444444332 22 3333 4687654333
Q ss_pred --CCccchhhhhcccccccCCcChhhHHHhhhhccc---C--CcEEEEe--cCh----hhHHHHHHHHHcCC-ceEEEe
Q 002884 781 --PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVR---P--GGKLIVR--DEP----SAVTEVENFLKSLH-WEILFA 845 (870)
Q Consensus 781 --PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILR---P--gG~~iir--d~~----~~~~~~~~~~~~l~-W~~~~~ 845 (870)
+.+||+|-+..++-. .-.+..+|-++.|+|+ | ||.++|. ... .....+...++... |.+...
T Consensus 159 ~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp HSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred ccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 478999977555432 2246679999999999 9 9965543 211 11234444566666 666543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00052 Score=74.66 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=79.8
Q ss_pred ccccccccccccccchhHHhhhcCCC---eEEEEeccCCCC-CChhHHH----hhCc--cceeccccccccCCCCccchh
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-DTLPIIY----ERGL--FGIYHDWCESFSTYPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-~tl~~i~----eRGl--ig~~h~wce~f~tyPrtyDll 787 (870)
+|..-..|||+|||.|+++..++... . .|+-+|.. ..+..+. ..|+ |-+++.-...++.....||+|
T Consensus 200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~---~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~I 276 (354)
T 3tma_A 200 DARPGMRVLDPFTGSGTIALEAASTLGPTS---PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRI 276 (354)
T ss_dssp TCCTTCCEEESSCTTSHHHHHHHHHHCTTS---CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEE
T ss_pred CCCCCCEEEeCCCCcCHHHHHHHHhhCCCc---eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEE
Confidence 45555679999999999987776531 2 22333333 3444433 3464 444443333444434678999
Q ss_pred hhhccccccc-CCc----ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe---ecCC-CceEEEEEe
Q 002884 788 HADHLFSQLK-NRC----KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA---FSKD-QEGVLSAQK 858 (870)
Q Consensus 788 Ha~~lfS~~~-~rc----~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~---~~~~-~e~iL~~~K 858 (870)
.++--|..-. ..- ....++.++-|+|||||.++|-.... ..++.+++ ..|+.... ++.. .-.|++++|
T Consensus 277 i~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 277 LANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp EECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEEEEECCBTTBCCEEEEEEE
T ss_pred EECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEEEEEEEeCCEEEEEEEEEc
Confidence 9865554211 111 12568889999999999999875543 23556666 78876533 2332 335666665
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00068 Score=72.96 Aligned_cols=124 Identities=11% Similarity=0.132 Sum_probs=72.7
Q ss_pred cccccccc------cchh-HHhhhcC--CCeEEEEeccCCCCCChhHHHhhCccc-eeccccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRA------VYGG-FAAALKD--LQVWVMNVVNVNSPDTLPIIYERGLFG-IYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~a------g~Gg-faaaL~~--~~vwvmNvvp~~~~~tl~~i~eRGlig-~~h~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|| |.|+ .++.+.. ..|.-+-+.|. + .++.= +..|+.+. .++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v-----~~v~~~i~gD~~~~--~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V-----SDADSTLIGDCATV--HTANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B-----CSSSEEEESCGGGC--CCSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C-----CCCEEEEECccccC--CccCcccEEEEcCC
Confidence 35999999 5576 3333333 23555444444 2 23322 33455442 24589999998643
Q ss_pred cccc------c--CCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCce-EEEe--ecCCCceEEEEEe
Q 002884 793 FSQL------K--NRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWE-ILFA--FSKDQEGVLSAQK 858 (870)
Q Consensus 793 fS~~------~--~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~-~~~~--~~~~~e~iL~~~K 858 (870)
.... . ..-.+..+|-++-|+|||||.|++... ......+..+++...|. +... .....|.+|+|+.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 2211 1 111234789999999999999999542 22235777778877554 4443 1234688888876
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=5.3e-05 Score=82.40 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=63.1
Q ss_pred ccccccccccccccchhHHhhhcCC--C--eEEEEeccCCCCCChhHHHh-hCccceeccccccccCCCCccchhhhhcc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKDL--Q--VWVMNVVNVNSPDTLPIIYE-RGLFGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~~--~--vwvmNvvp~~~~~tl~~i~e-RGlig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
.|...+.|||+|||.|.++.+|.+. + +.++-+ | ..+..+.+ .++--+.+|..+ ++| .||+|.+.++
T Consensus 190 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~---~~~-~~D~v~~~~v 260 (358)
T 1zg3_A 190 VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFK---SIP-SADAVLLKWV 260 (358)
T ss_dssp HHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTT---CCC-CCSEEEEESC
T ss_pred hccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H----HHHhhcccCCCcEEEeCccCC---CCC-CceEEEEccc
Confidence 3456678999999999999999765 2 333333 2 11111111 232223335554 456 4999999888
Q ss_pred cccccCCcChhhHHHhhhhcccC---CcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRP---GGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRP---gG~~iird 823 (870)
|-.+.+. ....+|-++-|+||| ||.++|.|
T Consensus 261 lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 261 LHDWNDE-QSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp GGGSCHH-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred ccCCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 8766431 123799999999999 99999975
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00024 Score=70.24 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhhhcccccccCCc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc 800 (870)
..|||+|||.|.|+.+|...+. -.|+-+|.. ..+..+.++- -+-+++. .+..+|.+||+|-++..|......
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~---d~~~~~~~~D~v~~~~p~~~~~~~- 126 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVA---DVSEISGKYDTWIMNPPFGSVVKH- 126 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEEC---CGGGCCCCEEEEEECCCC-------
T ss_pred CEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEEC---cHHHCCCCeeEEEECCCchhccCc-
Confidence 5699999999999999987753 234555544 5666655552 1223332 222356899999998888766542
Q ss_pred ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
....+|-++-|+| |+.+++. +......+..++.... ++.
T Consensus 127 ~~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVF 165 (200)
T ss_dssp -CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEE
T ss_pred hhHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEE
Confidence 2235788888888 5544444 4456677777777665 443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=8e-05 Score=75.89 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=57.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccc--eec-cccccccCCC-C-ccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFG--IYH-DWCESFSTYP-R-SYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig--~~h-~wce~f~tyP-r-tyDllHa~~ 791 (870)
-..|||+|||.|.+++.|.+..- ..|+-+|.. ..+..+.++ |+-. ++. |. ...+| . .||+|.+..
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEECS
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc---ccCCCCCCCccEEEECC
Confidence 35799999999999999987521 233334432 444444443 4422 222 23 34454 3 499999866
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.+.. +.-++-|+|||||.+|+.-..
T Consensus 167 ~~~~---------~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 167 GAPK---------IPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BBSS---------CCHHHHHTEEEEEEEEEEECS
T ss_pred cHHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 5542 334788999999999998543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00073 Score=71.30 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=70.4
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----------hCccceeccccccccCCCCccchhhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----------RGLFGIYHDWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----------RGlig~~h~wce~f~tyPrtyDllHa~ 790 (870)
-++|||+|||.|+++++|...+ ..|+-++.. ..+.++.+ ..-+.+++.-+..+ +.+||+|-++
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---IKKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---CCCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---HhhCCEEEEC
Confidence 4689999999999999888775 233333332 22222221 11133333222222 3889998875
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEeec----CCCceEEEEEeCC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAFS----KDQEGVLSAQKGN 860 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~~----~~~e~iL~~~K~~ 860 (870)
. .+....+-++-|+|||||.+++... ...+..+...++..--.+..... ...-.+++|.|.+
T Consensus 147 ~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 147 Q--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp S--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred C--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCC
Confidence 1 1223378899999999999999621 12233444444443223332211 2234577888863
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00015 Score=74.21 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=84.1
Q ss_pred ccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhh----Cccc-eeccccccc-cCCCCccchhhhhcc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYER----GLFG-IYHDWCESF-STYPRSYDLLHADHL 792 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eR----Glig-~~h~wce~f-~tyPrtyDllHa~~l 792 (870)
-.+|||+|||+|.+|.+|... .+ .++.+|-. ..+.++.++ |+-+ +-+ +... ...|.+||+|-+..+
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a---~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKI---IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCC---EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 568999999999999999766 44 55666755 677666654 4442 222 3222 244688999777655
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------hhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
+-++. .....+..+-+.|||||.||--++. .+-...+..+..=.|.+....- ..|-+.|.+|
T Consensus 125 LHlL~---~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~-~nEl~y~~~~ 197 (200)
T 3fzg_A 125 LPVLK---QQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVI-GNELVYITSG 197 (200)
T ss_dssp HHHHH---HTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEE-TTEEEEEECC
T ss_pred HHhhh---hhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeee-CceEEEEEec
Confidence 55552 2334677899999999999988722 2346677777888888765322 3344544444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 870 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-10 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 6e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.002 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 57.8 bits (138), Expect = 9e-10
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 3/151 (1%)
Query: 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALER 511
IDF+++ + A + RV LD+ CG L ER + +E + +
Sbjct: 27 IDFVEEIFKEDAKREVRRV-LDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 512 GIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH--IDGGKLLLELNRVLRPGGYFVWSA 569
I + G +N FD V + + D KL ++ L+PGG F+
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 570 TPVYQKLGEDVEIWNAMSNLTVSMCWELVTI 600
+ + +WN + + +
Sbjct: 146 PCWFYGGRDGPVVWNEQKGEEKLVIMDWREV 176
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.4 bits (109), Expect = 7e-06
Identities = 38/245 (15%), Positives = 69/245 (28%), Gaps = 35/245 (14%)
Query: 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFAL 509
Y+ F+ V KI K + +D GCG G L + D + + A
Sbjct: 13 DYVSFLVNTVWKIT--KPVHI-VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR 69
Query: 510 ERGIPAISAVMGTKRLQFPRNVFDLVHCARCR--VPWHIDGGKLLLELNRVLRPGGYFV- 566
E + + D A C + +L ++ ++ GG +
Sbjct: 70 ELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 129
Query: 567 -----------WSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKM---DKLNSAGFAI 612
+ Q + + + + I M L+ G
Sbjct: 130 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKN 189
Query: 613 YRKPTTNECYEKRNQMTPPMCQNEEDPNAAWYVPL-QACVHRVPVDKAE-------RGSQ 664
+ +K N + M N++ Y L + + P DK + RG
Sbjct: 190 IECRVS----DKVNFLDSNMHHNDK---NDLYQSLKEEGIAGDPGDKQQFVERLIARGLT 242
Query: 665 WPEAW 669
+ A
Sbjct: 243 YDNAL 247
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 443 QFIHGALHYIDFIQQAVPKIAW---GKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKD 499
+ A HY V ++ K T V LD+GCG + + + ++ D
Sbjct: 58 RAFLDAGHYQPLRDAIVAQLRERLDDKATAV-LDIGCGEGYYTHAFADA-LPEITTFGLD 115
Query: 500 EHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVL 559
I+ A +R V + RL F D + P + EL RV+
Sbjct: 116 VSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR--IYAPCKAE------ELARVV 167
Query: 560 RPGGYFVWSATPVYQKLGEDVEIW 583
+PGG+ +ATP + L E +
Sbjct: 168 KPGGWV-ITATPGPRHLMELKGLI 190
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 18/114 (15%)
Query: 472 LDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--------- 522
LDV CG L E S D+ +
Sbjct: 61 LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 120
Query: 523 KRLQFPRNVFDLVHCARCRVPWHI--------DGGKLLLELNRVLRPGGYFVWS 568
+ + FD V C H+ + L + ++RPGG V
Sbjct: 121 DKDVPAGDGFDAVICL-GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 5/150 (3%)
Query: 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFAL 509
+ DFI + + + LD+ CG + L + T + E ++ +
Sbjct: 22 KWSDFIIEKCVENN-LVFDDY-LDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF 79
Query: 510 ERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGG---KLLLELNRVLRPGGYFV 566
FDL+ C + ID K ++ L+ GG F+
Sbjct: 80 RSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
Query: 567 WSATPVYQKLGEDVEIWNAMSNLTVSMCWE 596
+ Y+ + V WE
Sbjct: 140 FDINSYYKLSQVLGNNDFNYDDDEVFYYWE 169
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.002
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 7/116 (6%)
Query: 472 LDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528
LD+G G + + A+ + + +
Sbjct: 38 LDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97
Query: 529 RNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583
D+ C W L + L+PGG + P +++L EI
Sbjct: 98 NEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLIG-EPYWRQLPATEEIA 150
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 0.004
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 472 LDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529
LD+G G + + + + A + + L FP
Sbjct: 21 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80
Query: 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566
+ FD++ C R D K + E+ RVL+ G F+
Sbjct: 81 DSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 870 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.74 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.61 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.59 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.57 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.51 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.48 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.46 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.44 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.4 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.4 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.37 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.36 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.36 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.35 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.35 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.34 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.33 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.33 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.32 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.29 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.27 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.25 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.2 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.18 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.12 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.11 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.02 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.0 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.94 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.93 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.79 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.79 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.73 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.7 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.63 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.62 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.62 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.6 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.59 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.58 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.58 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.57 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.55 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.52 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.51 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.49 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.45 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.44 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.43 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.41 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.4 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.39 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.38 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.32 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.31 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.29 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.27 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.26 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.24 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.22 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.21 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.21 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.2 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.2 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.19 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.19 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.18 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.18 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.16 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.15 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.13 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.12 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.12 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.11 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.1 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.04 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.03 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.02 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.02 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.02 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.98 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.97 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.95 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.91 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.86 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.84 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.81 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.77 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.74 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.74 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.73 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.73 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.72 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.71 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.7 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.69 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.69 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.65 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.64 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.63 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.61 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.52 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.47 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 97.45 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.37 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.35 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.35 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.32 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.29 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.23 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.14 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.06 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.01 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.91 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.91 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.8 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.77 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.51 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.41 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.3 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.18 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 96.17 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 96.03 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.0 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.0 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 95.99 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.98 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 95.89 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.87 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.72 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 95.52 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 95.41 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 95.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 95.32 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 95.22 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 94.99 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 94.95 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.91 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.76 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.74 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.68 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 94.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.94 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 93.94 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 93.91 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 93.89 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.64 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.62 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.94 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 92.94 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 92.68 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.51 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 92.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.29 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.24 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.22 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 91.35 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 90.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.79 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 90.73 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.0 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 89.29 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.81 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 88.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.96 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.79 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 87.61 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 86.49 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 86.24 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 85.57 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 83.98 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 83.23 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.95 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 82.16 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 80.07 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 80.06 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=6.7e-18 Score=170.84 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=94.4
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQF 527 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPf 527 (870)
+.++|.+.+. -+++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+ +.+...+++.+.++. +.+.+||
T Consensus 4 ~~~~l~~~~~----~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~~~~ 78 (234)
T d1xxla_ 4 SLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPF 78 (234)
T ss_dssp HHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCS
T ss_pred HHHHHHHHhC----CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhcccccccccccccccccccc
Confidence 4455544433 367899999999999999999886 8999999999999988 456666776555555 5688999
Q ss_pred CCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 528 PRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++++||+|+|.. +++|..++..+|+++.|+|||||+|+++.
T Consensus 79 ~~~~fD~v~~~~-~l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 79 PDDSFDIITCRY-AAHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp CTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceeeeec-eeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 999999999986 48888999999999999999999999974
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.74 E-value=9.8e-18 Score=167.73 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=105.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
+++.+|||||||+|.++..|++. +|+|+|+|+.|+..|+. .+...+.+.+. .+.+...+||++++||+|+|..+ +
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~-~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~-l 91 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA-A 91 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC-G
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhh-ccccccccccccccccccccccccccccccccccc-c
Confidence 56789999999999999999875 89999999999998874 44455666554 44557889999999999999864 8
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
||..++..+|.+++|+|||||+|++....... .+......+.......+...+.. ......+.++||.+..
T Consensus 92 ~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aGf~~~~ 164 (231)
T d1vl5a_ 92 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKK-SDWLKMLEEAGFELEE 164 (231)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBH-HHHHHHHHHHTCEEEE
T ss_pred cccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCH-HHHHHHHHHCCCEEEE
Confidence 88889999999999999999999987432221 12222222222222223223332 2456678888997764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.71 E-value=1.8e-17 Score=172.54 Aligned_cols=185 Identities=16% Similarity=0.216 Sum_probs=119.8
Q ss_pred cchhhhhc-CCeeecC---C--CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEe
Q 002884 424 HQNWVRVT-GEIITFP---G--GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMS 494 (870)
Q Consensus 424 ~qnWv~~~-Ge~~~FP---g--ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVD 494 (870)
...|..+| |+.++|. . ....+........+.+...+.......++.+|||||||+|.++..|+++ .|+|+|
T Consensus 18 ~~fy~~~w~g~~~h~G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD 97 (282)
T d2o57a1 18 DRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLN 97 (282)
T ss_dssp HHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHcCCCCceeeecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEe
Confidence 34455666 4667652 1 1111112222334445554444434457899999999999999988764 799999
Q ss_pred CChhhHHHHHHHHHHHcCCC-cE-EEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 495 FAPKDEHDAQIQFALERGIP-AI-SAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 495 iSp~ml~~A~vq~A~ergl~-~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+++.|+..|+. .+...|+. .+ +...+...+|+++++||+|+|..+ +++..++..+|.+++|+|||||+|++.....
T Consensus 98 ~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~-l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 98 IAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA-FLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp SCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccchhhhhhhc-ccccccccccccccccccccccccccccchhhccch-hhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 99999988874 45555654 34 444557899999999999999865 6667889999999999999999999985433
Q ss_pred cCc--hhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 573 YQK--LGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 573 ~~t--L~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
... .......+.... +.. + ..+......+.++||....
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~-~--~s~~~~~~~l~~~Gf~~i~ 215 (282)
T d2o57a1 176 EDGIDKSSIQPILDRIK-LHD-M--GSLGLYRSLAKECGLVTLR 215 (282)
T ss_dssp CTTCCGGGGHHHHHHHT-CSS-C--CCHHHHHHHHHHTTEEEEE
T ss_pred CCCCchhHHHHHHHHhc-cCC-C--CCHHHHHHHHHHcCCceEE
Confidence 221 111122222111 111 1 1133446678889997655
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=3.7e-16 Score=154.47 Aligned_cols=101 Identities=24% Similarity=0.361 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+..+|||||||+|.++..|++. .|+|+|+|+.|+..|+ +.+...+........++..+|+++++||+|+|..+ ++|
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~-l~~ 114 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS-IVH 114 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC-GGG
T ss_pred CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecc-hhh
Confidence 5679999999999999999886 8999999999999987 45555666666666678899999999999999865 666
Q ss_pred cc--ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HI--DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~--D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. +...+|+++.|+|||||+|++..
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 54 55789999999999999999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.3e-15 Score=150.51 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=95.8
Q ss_pred CCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI 546 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~ 546 (870)
+..+|||||||+|.++..|. .++|+|+|+.|+..|+ ++++ .+...+...+|+++++||+|+|+. +++|..
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~a~-----~~~~--~~~~~d~~~l~~~~~~fD~I~~~~-~l~h~~ 105 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEIAR-----KRGV--FVLKGTAENLPLKDESFDFALMVT-TICFVD 105 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT--CCEEEESCHHHHHHHH-----HTTC--EEEECBTTBCCSCTTCEEEEEEES-CGGGSS
T ss_pred CCCeEEEECCCCcccccccc--eEEEEeCChhhccccc-----cccc--cccccccccccccccccccccccc-cccccc
Confidence 35689999999999998886 4799999999876554 4443 455566788999999999999986 488888
Q ss_pred ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 547 DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 547 D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
++..+|.+++|+|||||.|++..+.....+..................+.........|+.+||.+..
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999986544332222111111111111112222233456678899997554
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1e-15 Score=153.21 Aligned_cols=98 Identities=23% Similarity=0.359 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|++. +|+|+|+|+.|+..|+ +++... ....+...+||++++||+|+|...++||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~-----~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR-----EKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH-----HHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeecccccccccc-----cccccc-cccccccccccccccccceeeecchhhh
Confidence 5679999999999999999986 8999999999876554 445433 4455678899999999999986556888
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+|+..+|+++.|+|||||+|+++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 89999999999999999999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.5e-15 Score=152.91 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc-CcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM-GTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~-dae~L 525 (870)
.++.|...+. ..++.+|||||||+|.++..|+++ .|+|||+|+.|+..|+ +.+...|+.. +.++. +...+
T Consensus 21 ~~~~l~~~~~----l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 21 KYATLGRVLR----MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHTC----CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHcC----CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhhc
Confidence 3444554433 356889999999999999888753 8999999999999887 4566677653 44444 45666
Q ss_pred CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHHHhhcccccccchhHHHHHHH
Q 002884 526 QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIWNAMSNLTVSMCWELVTIKMD 603 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w~~~~~la~~mcW~~va~~~~ 603 (870)
+++++||+|+|..+ ++|..+...+|.+++|+|||||+|++..+.... ...+....|..... ...........
T Consensus 96 -~~~~~fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 169 (245)
T d1nkva_ 96 -VANEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSST----SDFLTLPGLVG 169 (245)
T ss_dssp -CCSSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCG----GGSCCHHHHHH
T ss_pred -cccCceeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCC----cccCCHHHHHH
Confidence 57889999999865 677778999999999999999999998532211 12233333321111 11111234556
Q ss_pred HHhhccceEEE
Q 002884 604 KLNSAGFAIYR 614 (870)
Q Consensus 604 ~L~daGfaI~r 614 (870)
.+.++||.+..
T Consensus 170 ~~~~aG~~~v~ 180 (245)
T d1nkva_ 170 AFDDLGYDVVE 180 (245)
T ss_dssp HHHTTTBCCCE
T ss_pred HHHHcCCEEEE
Confidence 67888887654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=1.2e-14 Score=146.03 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
..++.+|||||||+|.++..|++. +|+|+|+|+.|+..|+...+ ..+............++++...||+|+|+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~~~~~~~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVEIKNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchhhccccccceeeEEe
Confidence 346789999999999998887642 79999999999999885444 33333333333334455666789999998
Q ss_pred ccccccc--cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWH--IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~--~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.+ +||. .+...+|++++|+|||||.|++....
T Consensus 116 ~~-l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 116 FT-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp SC-GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ee-ccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 64 6766 35689999999999999999998543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=6.2e-15 Score=148.89 Aligned_cols=113 Identities=25% Similarity=0.292 Sum_probs=88.9
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCc
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNV 531 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~S 531 (870)
++..++.... ..+..+|||||||+|.++..|++. +|+|+|+|+.|+..|+. .+...++...+...++..++++ +.
T Consensus 29 ~~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~ 105 (251)
T d1wzna1 29 FVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NE 105 (251)
T ss_dssp HHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SC
T ss_pred HHHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-cc
Confidence 3444443322 345679999999999999999876 89999999999999885 4556676666777778999987 57
Q ss_pred eeEEEecccccccc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCARCRVPWH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~~alhw~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||+|+|...+++|. .+...+|.+++|+|||||+|++..
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999975556654 344689999999999999999973
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.51 E-value=3.5e-14 Score=143.97 Aligned_cols=114 Identities=20% Similarity=0.320 Sum_probs=87.5
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd 529 (870)
.+++.+.+... +.++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+. .+...+.+..+...+...++++
T Consensus 24 ~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~~~~~d~~~~~~~- 99 (246)
T d1y8ca_ 24 SDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCGGGCCCS-
T ss_pred HHHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccceeeccchhhhccc-
Confidence 44555554432 334679999999999999999986 79999999999999874 4556677666666666777764
Q ss_pred CceeEEEeccccccccc---ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHI---DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~---D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++||+|+|...++++.. +...+|.+++++|||||.|++..
T Consensus 100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 68999998654555543 44679999999999999999863
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.5e-14 Score=145.09 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=99.9
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCC
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPR 529 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd 529 (870)
++.+.+..+....+..+|||||||+|.++..|+.. +|+|+|+|+.|+..|+.. +...+.+... ...+...+++++
T Consensus 47 ~l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~-~~~~~~~~~~f~~~d~~~~~~~~ 125 (222)
T d2ex4a1 47 FLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTY-LGEEGKRVRNYFCCGLQDFTPEP 125 (222)
T ss_dssp HHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHH-TGGGGGGEEEEEECCGGGCCCCS
T ss_pred HHHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccc-ccccccccccccccccccccccc
Confidence 34444433333445689999999999999887653 799999999999988743 3344444444 445578899999
Q ss_pred CceeEEEecccccccccCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhh
Q 002884 530 NVFDLVHCARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNS 607 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~d 607 (870)
++||+|+|..+ +|+..++ ..+|.+++|+|||||.|++.......... +.. ........ .......+.+
T Consensus 126 ~~fD~I~~~~~-l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-----~~~---~~~~~~~~-~~~~~~l~~~ 195 (222)
T d2ex4a1 126 DSYDVIWIQWV-IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-----LDD---VDSSVCRD-LDVVRRIICS 195 (222)
T ss_dssp SCEEEEEEESC-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-----EET---TTTEEEEB-HHHHHHHHHH
T ss_pred ccccccccccc-cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-----ccc---CCceeeCC-HHHHHHHHHH
Confidence 99999999865 6666554 57999999999999999998532221110 000 01111111 2234566788
Q ss_pred ccceEEE
Q 002884 608 AGFAIYR 614 (870)
Q Consensus 608 aGfaI~r 614 (870)
+||.+.+
T Consensus 196 aGf~ii~ 202 (222)
T d2ex4a1 196 AGLSLLA 202 (222)
T ss_dssp TTCCEEE
T ss_pred cCCEEEE
Confidence 8998876
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.49 E-value=1.2e-13 Score=138.85 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=95.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||+|.++..|++. +|+|+|+|+.++..|+. +...++.++.+ ...+++ +++||+|+|.. +++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~-----~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~-vle 92 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQG-----RLKDGITYIHSRFEDAQL-PRRYDNIVLTH-VLE 92 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHH-----HSCSCEEEEESCGGGCCC-SSCEEEEEEES-CGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhc-----cccccccccccccccccc-ccccccccccc-eeE
Confidence 4668999999999999999875 99999999998876652 22233444444 466665 57899999985 588
Q ss_pred cccChHHHHHHHH-hhcCCCcEEEEEECCCcCchhHHHHHHHhhcc-----------cccccchhHHHHHHHHHhhccce
Q 002884 544 WHIDGGKLLLELN-RVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN-----------LTVSMCWELVTIKMDKLNSAGFA 611 (870)
Q Consensus 544 w~~D~~~vL~Ei~-RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~-----------la~~mcW~~va~~~~~L~daGfa 611 (870)
|..++..+|.++. |+|||||.|+++.+. ...+......|..... ..+ ..+.........+..+||.
T Consensus 93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~pn-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~l~~~l~~~Gf~ 170 (225)
T d2p7ia1 93 HIDDPVALLKRINDDWLAEGGRLFLVCPN-ANAVSRQIAVKMGIISHNSAVTEAEFAHGH-RCTYALDTLERDASRAGLQ 170 (225)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEEC-TTCHHHHHHHHTTSSSSTTCCCHHHHHTTC-CCCCCHHHHHHHHHHTTCE
T ss_pred ecCCHHHHHHHHHHHhcCCCceEEEEeCC-cccHHHHHHHHhhhhhhhhhcCccccceee-eeccCHHHHHHHHHHCCCE
Confidence 8899999999998 899999999998543 3333333232311100 111 1111122445678889998
Q ss_pred EEE
Q 002884 612 IYR 614 (870)
Q Consensus 612 I~r 614 (870)
+..
T Consensus 171 i~~ 173 (225)
T d2p7ia1 171 VTY 173 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.5e-14 Score=147.57 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|++. .++|+|+|+.|+..|. ++.....+.+.+...+||++++||+|++...
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~-----~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~- 156 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-----KRYPQVTFCVASSHRLPFSDTSMDAIIRIYA- 156 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-----HHCTTSEEEECCTTSCSBCTTCEEEEEEESC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhh-----cccccccceeeehhhccCCCCCEEEEeecCC-
Confidence 35789999999999999988864 7899999999876554 3444455566678999999999999999753
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHH
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVE 581 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~ 581 (870)
.++ +.|+.|+|||||+|+++ +|..+.+.+++.
T Consensus 157 ~~~-------~~e~~rvLkpgG~l~~~-~p~~~~l~el~~ 188 (268)
T d1p91a_ 157 PCK-------AEELARVVKPGGWVITA-TPGPRHLMELKG 188 (268)
T ss_dssp CCC-------HHHHHHHEEEEEEEEEE-EECTTTTHHHHT
T ss_pred HHH-------HHHHHHHhCCCcEEEEE-eeCCcchHHHHH
Confidence 332 68999999999999998 566666666553
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.48 E-value=6.3e-14 Score=146.37 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR 524 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~ 524 (870)
.|+.+|...+.. ..++.+|||||||+|.++..|+.. .|+|+|+++.++..|+. .+...+....+...+...
T Consensus 13 d~l~~l~~~~~~---~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~-~~~~~~~~~~f~~~d~~~ 88 (281)
T d2gh1a1 13 DYVSFLVNTVWK---ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDATE 88 (281)
T ss_dssp HHHHHHHHTTSC---CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHH-HHHSSSSEEEEEESCTTT
T ss_pred HHHHHHHHHHhc---cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhc-cccccccccccccccccc
Confidence 455666554432 235789999999999999888763 69999999999988874 444455544455556778
Q ss_pred CCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 525 LQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 525 LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|++ ++||+|+|+.+ +||..++..+|.+++|+|||||.|++..+
T Consensus 89 ~~~~-~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 89 IELN-DKYDIAICHAF-LLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCCS-SCEEEEEEESC-GGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccc-CCceEEEEehh-hhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8886 47999999864 88888999999999999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.46 E-value=1.3e-13 Score=136.01 Aligned_cols=99 Identities=21% Similarity=0.379 Sum_probs=80.3
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+.+|||||||+|.++..|+++ +|+|+|+|+.|+..+.. .+...+++.+.+.. +...+++ +++||+|+|..+ +|+
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~-~~~ 107 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVV-MMF 107 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESC-GGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeee-eec
Confidence 469999999999999999987 89999999999998874 45567777655544 4466665 678999999865 665
Q ss_pred ccCh--HHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HIDG--GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D~--~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.++. ..+|.++.++|+|||+|++..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5433 689999999999999999874
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.8e-13 Score=141.42 Aligned_cols=120 Identities=11% Similarity=0.093 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhhh----cCCCCCEEEEECCCCchhHHHHhcC----------CEEEEeCChhhHHHHHHHHHHHcCCCcE
Q 002884 451 YIDFIQQAVPKIA----WGKYTRVSLDVGCGVASFGGYLFER----------DVLTMSFAPKDEHDAQIQFALERGIPAI 516 (870)
Q Consensus 451 Yid~L~~~Lp~i~----~g~~~~~VLDIGCGtG~~a~~La~r----------~VtgVDiSp~ml~~A~vq~A~ergl~~~ 516 (870)
+.+++.+.++.+. ..++..+|||||||+|.++..|+.. .++|+|+|+.|+..+....+....++..
T Consensus 20 ~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~ 99 (280)
T d1jqea_ 20 MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENV 99 (280)
T ss_dssp HHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccc
Confidence 3444555554432 2334448999999999987776542 5799999999998887655544444443
Q ss_pred EEE--cC-c------ccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 517 SAV--MG-T------KRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 517 ~~v--~d-a------e~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.+. .. . ...++++++||+|+|..+ +||..++..+|.+++++|+|||+|++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 100 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccchhhhhhhhcchhcccCCCCceeEEEEccc-eecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 322 11 1 134678899999999875 888889999999999999999999988543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=1.1e-12 Score=138.59 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+++.+|||||||.|.++.++++. .|+|+++|+..+..++ +.+...|+.....+. ....++++++||.|+|..+.
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~~-~~d~~~~~~~fD~i~sie~~ 136 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVR-IQGWEEFDEPVDRIVSLGAF 136 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEEE-ECCGGGCCCCCSEEEEESCG
T ss_pred CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhhh-hhcccccccccceEeechhH
Confidence 467999999999999999998864 8999999999888877 455566665432221 12345668899999998764
Q ss_pred ccccc--------ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHI--------DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~--------D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-|... +...+|+++.|+|||||.|++.+
T Consensus 137 eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 137 EHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp GGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred HhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 44432 24799999999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.40 E-value=2.4e-13 Score=138.93 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCC-CCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQF-PRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPf-pd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|..+..+++. .|+|+|+|+.|+..|..+ +...+.. ..+.+.+....++ ..++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 35789999999999988888763 699999999999988743 3333332 3344555555665 467899999986
Q ss_pred cccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ +||..+ ...+|.++.|+|||||+|+++.
T Consensus 102 ~-l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 102 S-FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp C-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred e-eeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 4 666532 3679999999999999999984
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=1.4e-12 Score=136.88 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEc-CcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++.+|||||||+|.++.++++. .|+|+|+|+.++..|+ +.+.+.++.... ... +...+ +++||.|+|..
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~ 125 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE 125 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence 457899999999999999888764 8999999999988877 455666665333 222 22322 46899999987
Q ss_pred cccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+..|.. .+...+|+++.|+|||||.|++..
T Consensus 126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 644443 234899999999999999999864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.36 E-value=4.1e-13 Score=138.58 Aligned_cols=101 Identities=20% Similarity=0.334 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
....+|||||||+|.++..|+.. .|+++|+++.|+..|+.... +.+.. +...+...+++++++||+|+|..+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v- 167 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA---GMPVGKFILASMETATLPPNTYDLIVIQWT- 167 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT---TSSEEEEEESCGGGCCCCSSCEEEEEEESC-
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc---ccccceeEEccccccccCCCccceEEeecc-
Confidence 45789999999999999887643 79999999999988764322 33333 344567889999999999999876
Q ss_pred cccccCh--HHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHIDG--GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++|..+. ..+|.++.++|||||+|++...
T Consensus 168 l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 6666554 5889999999999999999743
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=4.4e-13 Score=139.85 Aligned_cols=115 Identities=21% Similarity=0.206 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-----cEEEEcC
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-----AISAVMG 521 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-----~~~~v~d 521 (870)
..+.+++...+.. ..+.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+.... .++.. ......+
T Consensus 42 ~~~~~~l~~~l~~----~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhh----cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeeeeecc
Confidence 3455666665544 34679999999999999999886 89999999999998875433 33322 1122222
Q ss_pred c----ccCCCCCCceeEEEecccccccccC-------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 522 T----KRLQFPRNVFDLVHCARCRVPWHID-------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 522 a----e~LPfpd~SFDlV~Ss~~alhw~~D-------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ..+|+ .++||+|+|...++++..+ ...+|++++|+|||||+|++..
T Consensus 117 ~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 117 WLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 1 23343 4679999986555555432 4679999999999999999973
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.8e-13 Score=136.07 Aligned_cols=139 Identities=15% Similarity=0.102 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc---------------------------
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA--------------------------- 515 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~--------------------------- 515 (870)
.++.+|||||||+|.++..++.. .|+|+|+|+.|+..|+.... ......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK-KEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH-TCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh-hccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35679999999999988777653 79999999999998875432 221110
Q ss_pred --E--EEEc----CcccCCCCCCceeEEEeccccccccc----ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHH
Q 002884 516 --I--SAVM----GTKRLQFPRNVFDLVHCARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583 (870)
Q Consensus 516 --~--~~v~----dae~LPfpd~SFDlV~Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w 583 (870)
+ .... +....|++.++||+|++..+ +|+.. +...+|+++.|+|||||+|++++........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~------ 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------ 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhh-HHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce------
Confidence 0 0111 11334678899999999876 55542 4468999999999999999998543221100
Q ss_pred HhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 584 NAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 584 ~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
..........+. .......+..+||.|..
T Consensus 202 -~~~~~~~~~~~~-~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 202 -VGKREFSCVALE-KGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp -ETTEEEECCCCC-HHHHHHHHHHTTEEEEE
T ss_pred -eccccccccCCC-HHHHHHHHHHCCCEEEE
Confidence 001111112222 23456778999998776
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=8.3e-13 Score=137.14 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=85.4
Q ss_pred CccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEE
Q 002884 441 GTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISA 518 (870)
Q Consensus 441 gt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~ 518 (870)
|..|..|.+.--..+.+.+... ..++.+|||+|||+|.++..+++. +|+|+|+++.++..|+ +.+...++...+.
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~ 172 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFL 172 (254)
T ss_dssp C-----CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEE
T ss_pred ccccCccccchhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEE
Confidence 3455555544444444444332 246889999999999988877764 8999999999999988 4566778776655
Q ss_pred EcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 519 VMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 519 v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+.. .+++.++||+|+++.. . .....++.++.|+|||||+|++++
T Consensus 173 ~~d~~-~~~~~~~fD~V~ani~-~---~~l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 173 EGSLE-AALPFGPFDLLVANLY-A---ELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ESCHH-HHGGGCCEEEEEEECC-H---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecccc-ccccccccchhhhccc-c---ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 54433 2456788999999732 2 235788899999999999999984
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.34 E-value=5e-13 Score=128.21 Aligned_cols=102 Identities=8% Similarity=-0.151 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-------------CCcEEEEcCcccCC-CC
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG-------------IPAISAVMGTKRLQ-FP 528 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg-------------l~~~~~v~dae~LP-fp 528 (870)
..++.+|||+|||+|..+.+|+++ .|+|+|+|+.|+..|+.+ +...+ ....+...+...++ +.
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE-RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHH-HCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHH-hccccchhhhhhhhhccccccceeccccccccccc
Confidence 346889999999999999999975 999999999999888643 32211 11223333344444 34
Q ss_pred CCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 529 RNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
...||+|++..+ +++..+ ...++.++.++|||||+|++.
T Consensus 97 ~~~~D~i~~~~~-l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 97 IGHCAAFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHSEEEEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccceeEEEEEee-eEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 578999999854 555543 378999999999999998876
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=4.1e-12 Score=133.83 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=92.0
Q ss_pred hhhhhcCCeeec-----CCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCCh
Q 002884 426 NWVRVTGEIITF-----PGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAP 497 (870)
Q Consensus 426 nWv~~~Ge~~~F-----Pgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp 497 (870)
.|..+.|+.++| ..+...+..+.....+.+.+.+ ..+++.+|||||||.|.++.++++. .|+|+++|+
T Consensus 20 fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~ 95 (285)
T d1kpga_ 20 FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK 95 (285)
T ss_dssp HHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHc----CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccH
Confidence 344455666553 3333333333333444444433 3467899999999999999988864 999999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 498 KDEHDAQIQFALERGIPAISAV-MGTKRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 498 ~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+..|+...+.......+.+. .+...+| ++||.|+|..+..|.. .+...+|+++.|+|||||.|++.+
T Consensus 96 ~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 96 NQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp HHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 9888887444433333334333 3334443 6799999987644443 345899999999999999999863
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=131.85 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHH-----------------cCCCcEEEEcCcccC
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALE-----------------RGIPAISAVMGTKRL 525 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~e-----------------rgl~~~~~v~dae~L 525 (870)
..++.+|||+|||+|..+.+|++. +|+|||+|+.++..|+.+.... .+....+.+.+...+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 356789999999999999999986 8999999999887766432211 112233344444444
Q ss_pred -CCCCCceeEEEecccccccccC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 526 -QFPRNVFDLVHCARCRVPWHID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 526 -Pfpd~SFDlV~Ss~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+...+.||+|+...+..+.+.+ ...++.++.|+|||||++++..
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 4667899999987654444333 3789999999999999988773
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=2.6e-12 Score=126.67 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=77.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. +|+++|+++.++..++... ...++.. +.+..++..-++++++||+|+|+..
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~-~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p- 128 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENI-KLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP- 128 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC-
T ss_pred CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHH-HHhCCccceEEEEEcchhhhhccCCceEEEEccc-
Confidence 46889999999999999999875 8999999999998887543 4444432 3444433223677889999999864
Q ss_pred cccccC-hHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHID-GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D-~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|+..+ ...++.++.|+|||||.+++.
T Consensus 129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 129 IRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence 444333 367899999999999999876
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.3e-12 Score=132.22 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEec---
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHCA--- 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~Ss--- 538 (870)
++.+|||||||+|.++..|++. +|+++|+++.++..|+.. +...+........+. ...++++++||+|+..
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW-APRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHH-GGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHH-hhhcccccccccccccccccccccccccceeecccc
Confidence 5789999999999999999875 799999999999888743 333343333333332 3456788999999842
Q ss_pred -ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 -RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 -~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
...+++..+...++.+++|+|||||+|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 111333356688999999999999999875
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.29 E-value=7.1e-12 Score=122.88 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=80.9
Q ss_pred cCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEc-CcccCCCCCCceeEEEecc
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
...++.+|||||||+|.++..|+.. +|+++|+++.++..|+. .++..|+ +++.++. +...++++...||+|++..
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~-n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEM-NLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHH-HHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 3457899999999999999999876 89999999999999884 4556666 3554444 4566667778999999974
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ..+...++..+.++|||||+|++..
T Consensus 109 ~----~~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 109 S----GGELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp C----TTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c----cccchHHHHHHHHHhCcCCEEEEEe
Confidence 3 2345789999999999999999873
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=3.5e-12 Score=130.39 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LPfpd~SFDlV~Ss 538 (870)
.+++.+|||||||+|.++..|++. .|+|+|+|+.|+..+.. .+..+ ++...+.. . ...++.+..||++++.
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~-~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER--ENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHhhh--cccceEEEeeccCcccccccceeEEee
Confidence 467899999999999999888863 79999999999987763 34333 33333443 3 3334566677776654
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.+++..+...++.++.|+|||||+|+++.
T Consensus 149 -~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 149 -EDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp -ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 346666777899999999999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.27 E-value=1.6e-11 Score=125.83 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
...++|||||||+|.++..|+++ .++++|+ +.++..+....+ ..++ ..+.++.++..-+.+ .+||+|+++.+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~rv~~~~~D~~~~~~-~~~D~v~~~~v 155 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFEPLP-RKADAIILSFV 155 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTSCCS-SCEEEEEEESC
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH-Hhhcccchhhccccchhhcc-cchhheeeccc
Confidence 34689999999999999988864 7888998 567877775444 4444 445555554222333 56999999876
Q ss_pred ccccccCh--HHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHH--HhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 541 RVPWHIDG--GKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIW--NAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 541 alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w--~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|+..+. ..+|++++|+|||||.|++....... ........+ .-+..... ..+...+....+.++||.+.+
T Consensus 156 -lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g--~~rt~~e~~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 156 -LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG--ALRTREKWDGLAASAGLVVEE 232 (253)
T ss_dssp -GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC--CCCBHHHHHHHHHHTTEEEEE
T ss_pred -cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCC--cCCCHHHHHHHHHHCCCeEEE
Confidence 5544443 57899999999999999987543222 111111111 10000000 011123455678899998866
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=9.8e-12 Score=124.90 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC--CCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP--fpd~SFDlV~Ss~ 539 (870)
....|||||||+|.++..|+.. .++|+|+++.++..+. +.+.+.++.++.++.+ +..+. +++++||.|++.+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 4568999999999999888764 8999999999998887 5667778887776665 45554 8899999999874
Q ss_pred cccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..+|.... ..+|.++.|+|||||.|++.
T Consensus 108 -p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 -SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp -CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred -ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 47776432 47999999999999999997
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.20 E-value=4.4e-11 Score=123.27 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=90.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
..++|||||||+|.++..|+++ +++++|+ |.++..+....+.......+.++.++...|.|. .||+|++..++.
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~-~~D~v~~~~vLh 158 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVLL 158 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCGG
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccc-cchhhhcccccc
Confidence 4679999999999999999874 7899998 667777664444333334455555554345554 599999987644
Q ss_pred ccccC-hHHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHHHhhcc--cccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHID-GGKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIWNAMSN--LTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D-~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w~~~~~--la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..+ ...+|++++|+|||||.|++....... ........+..+.- ....... ...+....++++||.+.+
T Consensus 159 ~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~r-t~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVR-TRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCC-CHHHHHHHHHTTTEEEEE
T ss_pred ccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccC-CHHHHHHHHHHCCCceeE
Confidence 44322 257899999999999999988543221 11111111111110 1111111 133556778999998877
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.18 E-value=1.4e-11 Score=124.08 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=72.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCC---ceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRN---VFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~---SFDlV~ 536 (870)
.+++.+|||||||+|.++..|++. .|+|+|+++.|+..+.. .+..++ +...+.. ....+.... .+|+|+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~-~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE-LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH-HHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHH-HhhccC--CceEEEeeccCccccccccceEEEEE
Confidence 467899999999999988888763 69999999999998873 455543 4445444 343333333 455555
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+. ++++.+...++.+++|+|||||+|+++.
T Consensus 131 ~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 131 QD---IAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EC---CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec---ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 43 4444567899999999999999999873
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.6e-11 Score=125.14 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=86.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC----------------------------C
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI----------------------------P 514 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl----------------------------~ 514 (870)
..+.+|||||||+|.+...++.. +|+++|+|+.|+..++.......+. .
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 35789999999999876555432 7999999999998876432211100 0
Q ss_pred c--EEEEcCc------ccCCCCCCceeEEEecccccccc-cC---hHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHH
Q 002884 515 A--ISAVMGT------KRLQFPRNVFDLVHCARCRVPWH-ID---GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582 (870)
Q Consensus 515 ~--~~~v~da------e~LPfpd~SFDlV~Ss~~alhw~-~D---~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~ 582 (870)
. ....++. ...+++.++||+|+|.+| +|+. .+ ...+|+++.|+|||||+|++.+........
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~----- 206 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----- 206 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE-----
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHH-HHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc-----
Confidence 0 1122221 223455678999999876 5554 33 478999999999999999998543221100
Q ss_pred HHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 583 WNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 583 w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.....+. .... ......+.+.++||.+..
T Consensus 207 -~~~~~~~-~~~~-t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 207 -AGEARLT-VVPV-SEEEVREALVRSGYKVRD 235 (263)
T ss_dssp -ETTEEEE-CCCC-CHHHHHHHHHHTTEEEEE
T ss_pred -cCCcccc-cCCC-CHHHHHHHHHHCCCeEEE
Confidence 0000000 0111 122456778899999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=8.9e-11 Score=117.82 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC--CCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP--fpd~SFDlV~Ss~ 539 (870)
....|||||||+|.++..|+.. .++|+|+++.++..|. ..+.+.+++++.++.+ +..+. +++.++|.|++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 3568999999999999888763 8999999999998876 4566777877666554 45554 7889999999874
Q ss_pred cccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-.+|.... ..+|..+.|+|||||.|++.
T Consensus 110 -PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 -SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp -CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred -cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 36775432 68999999999999999987
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=9.4e-11 Score=122.23 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=80.2
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc--CCCcEEEEcC-cccCCCCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER--GIPAISAVMG-TKRLQFPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er--gl~~~~~v~d-ae~LPfpd~SFDlV~ 536 (870)
..++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.++.... ...+..++.+ ....++++++||+|+
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ 173 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV 173 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence 467999999999999999999863 89999999999988886554432 2345555554 567789999999998
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+. .+++..++.++.|+|||||.|++..
T Consensus 174 ld------lp~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 174 LD------MLAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp EE------SSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred Ee------cCCHHHHHHHHHhccCCCCEEEEEe
Confidence 74 2577899999999999999999874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=8.6e-11 Score=118.18 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss 538 (870)
.+++.+|||||||+|.++..|++. .|+++|+++.++..|... ....++.+...+.+ ....++.+++||+|++.
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~-~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~ 151 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhh-HhhhcccccccccCchHHccccccchhhhhhh
Confidence 357899999999999998888753 699999999999888754 45566666666554 45666667889999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ +++.+ .++.++|||||.|++.
T Consensus 152 ~~-~~~~p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 152 VG-VDEVP------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp SB-BSCCC------HHHHHHEEEEEEEEEE
T ss_pred cc-HHHhH------HHHHHhcCCCcEEEEE
Confidence 53 55432 3577899999999985
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.10 E-value=6.7e-11 Score=122.41 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=79.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.++....+..++.+..++..-.+++++||+|++.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld- 161 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD- 161 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec-
Confidence 467899999999999998888753 79999999999988886555544556666665543333678899999975
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
..++..+|.++.++|||||+|++..+
T Consensus 162 -----~p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 162 -----IPDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp -----CSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred -----CCchHHHHHHHHHhcCCCceEEEEeC
Confidence 24667899999999999999998743
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=4.8e-10 Score=118.98 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..++++ .|+++|.++ ++..|+ +.+...+.. .+.++ .+...+++++++||+|+|..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~-~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHH-HHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 5789999999999998888764 799999997 555555 344444443 34444 4568899999999999986321
Q ss_pred --cccccChHHHHHHHHhhcCCCcEEE
Q 002884 542 --VPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 542 --lhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
+.+......++..+.|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 2222345788999999999999997
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.2e-10 Score=118.35 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCccc
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKR 524 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~ 524 (870)
..|.+.|.+.... .++.+|||||||+|.++..++++ .|+++|.++.+.. +....+.......+.++ .+...
T Consensus 21 ~~y~~ai~~~~~~----~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~ 95 (311)
T d2fyta1 21 ESYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhcccc----CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHH
Confidence 3455555543322 25789999999999998888764 7999999998754 33233333333444444 45688
Q ss_pred CCCCCCceeEEEeccccccccc--C-hHHHHHHHHhhcCCCcEEEE
Q 002884 525 LQFPRNVFDLVHCARCRVPWHI--D-GGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 525 LPfpd~SFDlV~Ss~~alhw~~--D-~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
++++..+||+|+|... .++.. . ...++..+.|+|||||+++-
T Consensus 96 l~~~~~~~D~Ivse~~-~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWM-GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCC-BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeee-eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 8999999999999632 33222 2 36778888999999999984
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=3.3e-10 Score=118.02 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=78.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
..++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.. ....++ ....+..++....++...||.|+..
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~-~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d 179 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEGFDEKDVDALFLD 179 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-HHHhccccCcEEEeccccccccccceeeeEec
Confidence 467999999999999999888752 799999999999998854 444555 4555555554556778889999763
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+++..+|.++.++|||||.|++..+
T Consensus 180 ------~p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 180 ------VPDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp ------CSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ------CCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 35788999999999999999998743
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=1.5e-10 Score=118.01 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cc---ccCCCCCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GT---KRLQFPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-da---e~LPfpd~SFDlV 535 (870)
.+++.+|||+|||+|.++..|++. .|+|+|+++.|+..+.. .+..++ +...+. +. ..++.....+|+|
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~-~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP-IVEERR--NIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHSSCT--TEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHHhcC--CceEEEEECCCcccccccccceEEE
Confidence 457999999999999999999863 79999999999988763 444333 333333 32 3344556789999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++. ++++.+...++.++.++|||||+|+++
T Consensus 148 ~~d---~~~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 148 FED---VAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEC---CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEE---ccccchHHHHHHHHHHhcccCCeEEEE
Confidence 885 444556788999999999999999987
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=6.6e-10 Score=117.42 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..+++. .|+|+|.++.+ ..+. +.+...++. .+.++ .+...++++.++||+|+|...
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~-~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~- 109 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM- 109 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC-
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhh-hHHHHhCCccccceEeccHHHcccccceeEEEeeeee-
Confidence 4789999999999998888764 69999999854 3443 344445543 34444 456889999999999998632
Q ss_pred cccc---cChHHHHHHHHhhcCCCcEEEE
Q 002884 542 VPWH---IDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 542 lhw~---~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
.++. .....++..+.|+|||||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3222 3458899999999999999984
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=5.6e-10 Score=119.06 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH------HcCC--CcEEEE-cCcccCCCCCCce
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL------ERGI--PAISAV-MGTKRLQFPRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~------ergl--~~~~~v-~dae~LPfpd~SF 532 (870)
.++.+|||||||+|.++..++.. .++|+|+++.++..|...... ..|. ..+.++ .+...+|+.+..|
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~ 229 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 229 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence 56889999999999988777642 699999999998877644322 1122 234444 4557777776655
Q ss_pred --eEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 533 --DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 533 --DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+|+++. +.|..+....|.++.|+|||||.++..
T Consensus 230 ~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 230 NTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 6677653 344567789999999999999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.2e-09 Score=110.61 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc----CCCcEEEEc-CcccCCCCCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER----GIPAISAVM-GTKRLQFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er----gl~~~~~v~-dae~LPfpd~SFDlV 535 (870)
+++.+|||||||+|.++..|+.. .|+++|+++.++..|+..+.+.. +.....+.. +....+++.+.||+|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 56889999999999988777652 79999999999988875544321 223344444 445666778899999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++.. +++..+ .++.+.|||||+|++.
T Consensus 155 ~~~~-~~~~ip------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 155 HVGA-AAPVVP------QALIDQLKPGGRLILP 180 (224)
T ss_dssp EECS-BBSSCC------HHHHHTEEEEEEEEEE
T ss_pred hhhc-chhhcC------HHHHhhcCCCcEEEEE
Confidence 9974 355432 3578999999999985
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=3.1e-09 Score=116.66 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=71.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHH------cCC---CcEEEEcC-cccCCCC--
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALE------RGI---PAISAVMG-TKRLQFP-- 528 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~e------rgl---~~~~~v~d-ae~LPfp-- 528 (870)
.+++.+|||||||+|.++..++.. .|+|+|+++.|+..|+.+.... .+. .......+ ....++.
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 357889999999999988877653 6999999999998887544321 111 12222222 2222211
Q ss_pred -CCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 529 -RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 529 -d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-..+|+|+++. +++.++...+|.++.|+|||||.|+.+.
T Consensus 294 ~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 294 LIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 13468888763 4455677899999999999999998763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=7.4e-09 Score=110.55 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc----------CCCcEEEEc-CcccC--C
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER----------GIPAISAVM-GTKRL--Q 526 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er----------gl~~~~~v~-dae~L--P 526 (870)
..++.+|||+|||+|.++..|+.. .|+++|+++.++..|+.++.... ...++.+.. +.... .
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 467999999999999999998863 79999999999988886554321 122344443 33333 3
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..||.|+.- .+++..+|.++.++|||||+|++..+
T Consensus 176 ~~~~~fD~V~LD------~p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 176 IKSLTFDAVALD------MLNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp -----EEEEEEC------SSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred cCCCCcceEeec------CcCHHHHHHHHHHhccCCCEEEEEeC
Confidence 467789999863 14566799999999999999998743
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.73 E-value=1.5e-08 Score=102.94 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC-CCCceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF-PRNVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf-pd~SFDlV~Ss~~a 541 (870)
.+++.+|||||||+|.+++.|+.. .|+++|+++.++..|+.... ...++.++.++....+ ..+.||.|++..+
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~---~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a- 143 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS---YYNNIKLILGDGTLGYEEEKPYDRVVVWAT- 143 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT---TCSSEEEEESCGGGCCGGGCCEEEEEESSB-
T ss_pred hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh---cccccccccCchhhcchhhhhHHHHHhhcc-
Confidence 357889999999999999888764 89999999998887764322 2345555555433333 3578999999743
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++..+ ..+.+.|||||+|++-
T Consensus 144 ~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 144 APTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp BSSCC------HHHHHTEEEEEEEEEE
T ss_pred hhhhh------HHHHHhcCCCCEEEEE
Confidence 54332 3466889999999985
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=1.3e-09 Score=106.81 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=73.4
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCC-CCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcCh
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNS-PDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKL 802 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~-~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~ 802 (870)
.|||+|||+|.|+.+|.. + +-+|. +.++.++.+|++ -++...++.++..+.+||+|++.++|.+.. ++
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~-----~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--K-----IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--C-----EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccce--E-----EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence 599999999999999964 2 23444 488899999975 456677788766669999999999998875 47
Q ss_pred hhHHHhhhhcccCCcEEEEec
Q 002884 803 VPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 803 ~~vl~EmDRILRPgG~~iird 823 (870)
..+|.|+.|+|||||.++|.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEe
Confidence 789999999999999999985
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.5e-08 Score=105.90 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||+|||+|.++..|+. ..|+++|+|+..+..|+ +.+...++.++.++.++..-+++++.||+|+|+.-.+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 467899999999998887765 38999999999999888 5666777766666666544456678999999985333
Q ss_pred ccc------------cC------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWH------------ID------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~------------~D------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.-. +. ...++.++.++|+|||.|++.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 00 135788899999999999996
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=3.1e-08 Score=105.11 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c----ccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T----KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a----e~LPfpd~SFDlV~Ss~ 539 (870)
++.+|||++||+|.++..++.. .|+++|+++.++..++ +.+...|+..+.++.. . ..++...+.||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5789999999999999888753 8999999999999988 4555677765555544 2 23455567899999853
Q ss_pred cccccc--------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWH--------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
-.+.-. .+...++..+.++|||||+|++++.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 211111 1124678889999999999999854
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.62 E-value=2e-09 Score=111.00 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|+++..|++. +. +|+-+|.. .++..+.+ .|| +-+++.=.+.+ ++| .+||+|++.++
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQDA 144 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEESC
T ss_pred CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccchhhccch
Confidence 46999999999999999875 43 33444432 45544444 465 34555333444 455 89999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|-+.. +...+|-|+.|+|||||.|+|.+
T Consensus 145 l~h~~---d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 145 FLHSP---DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 87765 46789999999999999999985
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=5.3e-08 Score=98.19 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEeccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~~ 540 (870)
..++.+|||||||+|..++.|+. ..|+++|..+.++..|. +...+.++.++.++.++ .......+.||.|++. +
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~-~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~-~ 153 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAK-RNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVT-A 153 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC-S
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHH-HHHHHcCCceeEEEECccccCCcccCcceeEEee-c
Confidence 45788999999999998887764 37999999998888777 45556677777777765 3333346789999997 4
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++...+ .. +...|+|||+|++-
T Consensus 154 a~~~ip--~~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 154 GAPKIP--EP----LIEQLKIGGKLIIP 175 (215)
T ss_dssp BBSSCC--HH----HHHTEEEEEEEEEE
T ss_pred ccccCC--HH----HHHhcCCCCEEEEE
Confidence 455332 22 45679999999975
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.60 E-value=5.4e-09 Score=109.15 Aligned_cols=100 Identities=8% Similarity=0.122 Sum_probs=76.8
Q ss_pred cccccccccchhHHhhhcCC-Ce--EEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~v--wvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
-.|||+|||.||+|.+|.+. ++ ..+++++....-....+.+.||...++..+..+..+|.+||.|-+.++|-+...+
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~~~~ 133 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHE 133 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGTCGG
T ss_pred CEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHhhhh
Confidence 35999999999999998765 54 4455444433333445667799888877767777789999999999999876542
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
.+..+|-++.|+|+|||.++|.+
T Consensus 134 -~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 134 -NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp -GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -hHHHHHHHHHhccCCCceEEEEE
Confidence 56789999999999999999863
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.59 E-value=5.9e-09 Score=103.07 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=69.1
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCcc--ceeccccccccCCC-Cccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGLF--GIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGli--g~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
.|||+|||.|.|+.+|++.+. .|+-+|-. +++..+. ..|+. .+++.=++.++ || .+||+|+|.++|-+
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l~~ 93 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAAHH 93 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCGGG
T ss_pred EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccccccccccccc
Confidence 599999999999999998865 34444543 5555543 34553 44555556644 55 89999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. ++..+|-|+.|+|+|||+++|.+
T Consensus 94 ~~---d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 94 FP---NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 64 57789999999999999999975
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.58 E-value=8.6e-08 Score=101.73 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc-----ccCCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT-----KRLQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da-----e~LPfpd~SFDlV~ 536 (870)
.++.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...|+. ...++.++ ..++.....||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~-N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHH-HHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 35789999999999999888754 79999999999988874 45556663 34444442 23445567899999
Q ss_pred eccccccccc--------ChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRVPWHI--------DGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~alhw~~--------D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+..-.+.-.. +...++..+.++|||||+|++++..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8532111111 1245788899999999999998543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=7.1e-09 Score=103.70 Aligned_cols=92 Identities=21% Similarity=0.415 Sum_probs=71.4
Q ss_pred cccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc--cceeccccccccCCC-Cccchhhhhcccccc
Q 002884 725 VMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL--FGIYHDWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 725 vmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl--ig~~h~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
|||+|||+|.++..|+++.- +|+-+|.. .+|.++. ++|+ +-+++.-.+.+ +|| .+||+|.|.++|...
T Consensus 20 ILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~ 95 (234)
T d1xxla_ 20 VLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITCRYAAHHF 95 (234)
T ss_dssp EEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEEESCGGGC
T ss_pred EEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccceeeeeceeecc
Confidence 99999999999999998753 66777755 6666543 4454 44555445554 466 899999998888764
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. ++..+|-|+.|+|||||++++.+
T Consensus 96 ~---d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 96 S---DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHeeCCCcEEEEEE
Confidence 3 57889999999999999999974
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=9.9e-08 Score=92.36 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc----cCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK----RLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae----~LPfpd~SFDlV~Ss~~ 540 (870)
.+.+|||+|||+|.++..++.+ .|+++|.++.++..++.. +...++.......+.. ........||+|++..
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP- 118 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP- 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC-
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH-HHhhccccceeeeehhcccccccccCCccceeEEcc-
Confidence 4779999999999998877665 899999999999888744 5556666544444421 2234567899999974
Q ss_pred ccccccChHHHHHHH--HhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLEL--NRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei--~RVLKPGG~Lv~S 568 (870)
+|..+....+.++ ..+|+|||++++.
T Consensus 119 --PY~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 119 --PYAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp --CTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred --ccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence 4444554555555 3579999999986
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.56 E-value=5.7e-08 Score=95.77 Aligned_cols=103 Identities=10% Similarity=0.085 Sum_probs=65.5
Q ss_pred CCCCEEEEECCCCch----hHHHHhcC--------CEEEEeCChhhHHHHHHHH-------------HHHc----CC--C
Q 002884 466 KYTRVSLDVGCGVAS----FGGYLFER--------DVLTMSFAPKDEHDAQIQF-------------ALER----GI--P 514 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~----~a~~La~r--------~VtgVDiSp~ml~~A~vq~-------------A~er----gl--~ 514 (870)
.+.-+|+++|||+|. ++..|.+. .|+|+|+++..+..|+... .... +. .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999994 44444431 6999999999887775210 0000 00 0
Q ss_pred c------------EEEEcCc-ccCCCCCCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 515 A------------ISAVMGT-KRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ~------------~~~v~da-e~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. .+..... ...+.+.+.||+|+|.++++.+.... ..+|..++++|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 0111111 12233457899999987644443222 78999999999999999986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.55 E-value=1.2e-07 Score=98.05 Aligned_cols=121 Identities=10% Similarity=0.044 Sum_probs=82.2
Q ss_pred eecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc
Q 002884 435 ITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER 511 (870)
Q Consensus 435 ~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er 511 (870)
+.+.-..++|..+...-...|...+ .++.+|||+|||+|.++..++.+ +|+++|++|..+..+.. .+...
T Consensus 81 ~~~d~~~~~f~~~~~~er~ri~~~~------~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~-N~~~n 153 (260)
T d2frna1 81 YKLDVAKIMFSPANVKERVRMAKVA------KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLN 153 (260)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHC------CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHT
T ss_pred EEeccccccEecCCHHHHHHHHhhc------CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHH-HHHHh
Confidence 3333344555555443333444443 35889999999999998877653 89999999998888774 45555
Q ss_pred CCCc-EEEEcC-cccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 512 GIPA-ISAVMG-TKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 512 gl~~-~~~v~d-ae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++.. +..+.+ +..++ +.+.||.|+++. .+ ....+|.++.++|+|||++.+.
T Consensus 154 ~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 154 KVEDRMSAYNMDNRDFP-GENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp TCTTTEEEECSCTTTCC-CCSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCCceEEEEEcchHHhc-cCCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEE
Confidence 6654 444444 44443 457899999863 22 3356788899999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=1.8e-08 Score=99.75 Aligned_cols=94 Identities=21% Similarity=0.398 Sum_probs=73.6
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-Cccchhhhh-cccccccCCc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHAD-HLFSQLKNRC 800 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~-~lfS~~~~rc 800 (870)
.|||+|||.|.++..|.+.+. .|+-+|.. .++..+.++|+.-.+..-.+.++ || .+||+|-|. +++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~~--- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE--- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS---
T ss_pred EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhhh---
Confidence 499999999999999999875 45555654 89999999997655554445554 55 899998874 4666543
Q ss_pred ChhhHHHhhhhcccCCcEEEEecC
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+...+|-|+-|+|+|||.+||+.+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 456789999999999999999854
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.51 E-value=1.2e-07 Score=95.96 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----------CEEEEeCChhhHHHHHHHHHH----HcCCCcEEEEcC-cccCCCCCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----------DVLTMSFAPKDEHDAQIQFAL----ERGIPAISAVMG-TKRLQFPRN 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----------~VtgVDiSp~ml~~A~vq~A~----ergl~~~~~v~d-ae~LPfpd~ 530 (870)
+++.+|||||||+|.+++.|+.. +|+++|+.+.++..|+..... ..++.++.++.+ ......+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 46889999999999988877653 599999999988887654322 123444555544 344444567
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||.|++.. ++...+ ..+.+.|||||+|++.
T Consensus 159 ~fD~Iiv~~-a~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGA-AAPDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECS-CBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ceeeEEEEe-echhch------HHHHHhcCCCcEEEEE
Confidence 899999974 454322 2467899999999985
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.5e-08 Score=102.03 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=68.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|||.|+++.+|+.. +..|. -+|.. .++..+.++ |+ +-+.+ |+.+ + +.+.+||+|+|.++
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~~~~v~---GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~v~~~~~ 109 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDHGITGT---GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEKCDVAACVGA 109 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCCEEE---EEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSCEEEEEEESC
T ss_pred CEEEEEcCCCCHHHHHHHHhcCCEEE---EEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCceeEEEEEeh
Confidence 35999999999999999764 66553 33433 566555554 76 34444 4433 2 34689999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+.. ++..+|-||.|+|||||.++|.+
T Consensus 110 ~~~~~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 110 TWIAG---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhccC---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 87665 46789999999999999999985
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.45 E-value=3.1e-07 Score=93.89 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
...++|||||||+|.++..|+++ +++.+|+.. .+ ........+.++.++..-+.| ..|+|++..++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~vL 149 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENAPPLSGIEHVGGDMFASVP--QGDAMILKAVC 149 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTCCCCTTEEEEECCTTTCCC--CEEEEEEESSG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hccCCCCCeEEecCCcccccc--cceEEEEehhh
Confidence 35689999999999999988865 788888732 21 112223455666554333455 35999998775
Q ss_pred cccccCh-HHHHHHHHhhcCCCcEEEEEECCCcC--chhHHHHHHHhhcc--c-ccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQ--KLGEDVEIWNAMSN--L-TVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL~El~~~w~~~~~--l-a~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.+|..+. ..+|+.++++|+|||.|++....... ...........++- + ...-..+...+....++++||...+
T Consensus 150 h~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 5554322 68899999999999999988532221 11111111111000 0 0011112244667778999998665
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.44 E-value=1.5e-08 Score=106.23 Aligned_cols=105 Identities=9% Similarity=0.157 Sum_probs=80.9
Q ss_pred cccccccccccccccccchhHHhhhcCC---CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+++.-+.. |||+|||.||+|.+|++. .|..+++++.+.......+.+.|+.+-++.-+..+...|.+||-|-+.+
T Consensus 58 l~l~~G~~--VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~ 135 (285)
T d1kpga_ 58 LGLQPGMT--LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIG 135 (285)
T ss_dssp TTCCTTCE--EEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEES
T ss_pred cCCCCCCE--EEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeeh
Confidence 44544533 999999999999988655 5677777777665555677888998888766666677789999988888
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.|-+... =....+|-++.|+|||||.++|.
T Consensus 136 ~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 136 AFEHFGH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CGGGTCT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhhhcCc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 8876533 13457899999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.43 E-value=2.9e-08 Score=98.73 Aligned_cols=98 Identities=10% Similarity=0.197 Sum_probs=79.8
Q ss_pred cccccccccchhHHhhhcC----CCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||+|.++.+|+. .+. +|+-+|.. .+|..+.++ +....++..|..+..+| ..+|++.+..+
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 4699999999999888764 243 77788876 899988776 78888888888888887 89999999777
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
|.... .=+...+|-+|-|+|+|||.||+.|.
T Consensus 118 l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 118 LQFLP-PEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGGSC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence 76543 23566899999999999999999863
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=1.8e-08 Score=98.34 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=70.8
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccce-eccccccccCCCCccchhhhhccccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGI-YHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~-~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.|||+|||.|.++..|.+.+. +|+-+|.. +++..+.++ |+.-. ++.-.+.++....+||+|.|.++|.+..
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 489999999999999998875 55666655 777776654 43222 2222233332238999999998888763
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. .++..+|-|+-|+|+|||.+||...
T Consensus 117 ~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 117 P-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 2 3566789999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=2.1e-08 Score=105.34 Aligned_cols=99 Identities=7% Similarity=0.101 Sum_probs=73.6
Q ss_pred ccccccccchhHHhhhcCC-Ce--EEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCC-
Q 002884 724 NVMDMRAVYGGFAAALKDL-QV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR- 799 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~v--wvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r- 799 (870)
.|||+|||.||++.+|++. ++ ..+++++....-....+.+.||...++.-+..+.+.+.+||.|-+.+.|-+..+.
T Consensus 64 ~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~~~~~ 143 (291)
T d1kpia_ 64 TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGA 143 (291)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTCCS
T ss_pred EEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhcchhh
Confidence 4999999999999998754 54 4444444333333445677799888776555666667899999998888876432
Q ss_pred -----cChhhHHHhhhhcccCCcEEEEe
Q 002884 800 -----CKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 800 -----c~~~~vl~EmDRILRPgG~~iir 822 (870)
=....++-++.|+|||||.+++.
T Consensus 144 ~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 144 GDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp SCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 13468999999999999999986
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.39 E-value=4.6e-08 Score=97.48 Aligned_cols=115 Identities=17% Similarity=0.330 Sum_probs=82.2
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc--cceeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
.+|||+|||.|.|+..|.+.+. .|+-+|-. +.+.++..|.- +-+++.-.+.+. .|.+||+|.+.++|.+..
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~-- 95 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID-- 95 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS--
T ss_pred CcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC--
Confidence 4699999999999999998753 34444443 67777766632 333443334433 369999999999998765
Q ss_pred cChhhHHHhh-hhcccCCcEEEEecC---------------------------------hhhHHHHHHHHHcCCceEEE
Q 002884 800 CKLVPVMAEV-DRIVRPGGKLIVRDE---------------------------------PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 800 c~~~~vl~Em-DRILRPgG~~iird~---------------------------------~~~~~~~~~~~~~l~W~~~~ 844 (870)
+...+|.|+ +|+|||||+++|.-+ ......++.++.....++..
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 456789998 599999999999732 11256788888888887654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.39 E-value=1.7e-07 Score=88.67 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-c-ccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-T-KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-a-e~LPfpd~SFDlV~Ss~~ 540 (870)
.+.+|||+|||+|.++...+.+ +|+++|.++.++..++. .+...++.. ..++.+ . ..++...+.||+|++..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP- 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP- 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEech-
Confidence 5789999999999999766544 89999999998887764 444455543 444443 3 23455678899999863
Q ss_pred ccccccCh-HHHHHHH--HhhcCCCcEEEEE
Q 002884 541 RVPWHIDG-GKLLLEL--NRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~-~~vL~Ei--~RVLKPGG~Lv~S 568 (870)
+|.... ...|..+ .+.|+|||.+++.
T Consensus 92 --Py~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 --PYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp --SSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred --hhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 333222 4555544 3679999999987
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=4.5e-08 Score=97.24 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=84.5
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCCCccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
-..|||+|||.|.++..|+..... .|+-+|-. ++|..+.++ |. +-.++.=.+.++.-+.+||+|++.++|-
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 356999999999999998765431 34444544 777776665 22 2233332344554458999999999888
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChh---------------hHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS---------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~---------------~~~~~~~~~~~l~W~~~~ 844 (870)
+.... .+..+|-++-|+|||||+++|.+... ....++.++..-.+++.-
T Consensus 139 h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 139 HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 76532 24569999999999999999985321 267888999888888754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.32 E-value=3.2e-08 Score=100.77 Aligned_cols=105 Identities=23% Similarity=0.438 Sum_probs=71.2
Q ss_pred cccccccccccccccchhHHhhhcCC--Ce--EEEEeccCCCCCChhHHHhhCccceecccc-ccccCCCCccchhhhhc
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWC-ESFSTYPRSYDLLHADH 791 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~v--wvmNvvp~~~~~tl~~i~eRGlig~~h~wc-e~f~tyPrtyDllHa~~ 791 (870)
+.|...+.|||+|||.|.++.+|.++ ++ .++.+ |-........+.+.|+..-+.-.+ ..|...|..||+|.+.+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~ 154 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 154 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeecc
Confidence 57788999999999999999999865 33 33332 211112223445567654333222 22455678999999888
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+|-.+... ....+|-++-|+|||||.|+|.|
T Consensus 155 vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 155 VLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 88765432 23468999999999999999975
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.7e-07 Score=93.82 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=79.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----C--------------ccc---------------
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----G--------------LFG--------------- 768 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----G--------------lig--------------- 768 (870)
..|||+|||.|.++..|...+.. .|+-+|-. +++..+.++ + +-|
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 45999999999999888777653 55555544 555555433 1 001
Q ss_pred ----eecccccc--ccCCC-Cccchhhhhccccccc-CCcChhhHHHhhhhcccCCcEEEEecChh--------------
Q 002884 769 ----IYHDWCES--FSTYP-RSYDLLHADHLFSQLK-NRCKLVPVMAEVDRIVRPGGKLIVRDEPS-------------- 826 (870)
Q Consensus 769 ----~~h~wce~--f~tyP-rtyDllHa~~lfS~~~-~rc~~~~vl~EmDRILRPgG~~iird~~~-------------- 826 (870)
..++.+.. ..++| .+||+|.+..++.... .+=.+..+|-+|-|+|||||++|+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~ 210 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 210 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence 11111122 23444 7999998877776543 22245578999999999999999986321
Q ss_pred --hHHHHHHHHHcCCceEEE
Q 002884 827 --AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 827 --~~~~~~~~~~~l~W~~~~ 844 (870)
..+.++.+++.-.+++.-
T Consensus 211 ~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 211 ALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CCCHHHHHHHHHHTTEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEEE
Confidence 268899999998887643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.29 E-value=1.8e-07 Score=91.43 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=84.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCccc--eeccccccccCC-CCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLFG--IYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGlig--~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
-.+|||+|||.|.++.+|+...- +|.-+|.. ..+..+.+ .|+-. +-..++..+..+ +.+||+|-++..|
T Consensus 53 ~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 53 DDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI 129 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred CCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccE
Confidence 46799999999999999987632 44445543 55555543 24422 111233333333 5899999998776
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
..... .+..+|-++.|+|+|||.++|.-. ......+...++.+-+.+.......+-+||-++|
T Consensus 130 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K 193 (194)
T d1dusa_ 130 RAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp TTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred Eecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence 43221 245688999999999998877432 2223455555666666666554556677888887
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.27 E-value=1.7e-06 Score=86.52 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e~LP-----fpd~SFD 533 (870)
+.++|||||||+|..+..|+.. +|+++|+++.+...|+..+ ...|+. .+.++.+. +.+| +..+.||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhcccccccc
Confidence 4689999999999988888753 7999999999888887444 444553 34444442 2232 4567899
Q ss_pred EEEecccccccccCh--HHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+.- +++... ...+.++.++|||||++++-.
T Consensus 135 ~ifiD----~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLD----HWKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEEC----SCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeec----ccccccccHHHHHHHhCccCCCcEEEEeC
Confidence 99985 233332 345788889999999988753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=9.1e-08 Score=95.49 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=72.6
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccc-eeccccccccCCCCccchhhhh-ccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFG-IYHDWCESFSTYPRSYDLLHAD-HLF 793 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig-~~h~wce~f~tyPrtyDllHa~-~lf 793 (870)
..+.|||+|||+|.++..|++.+. +|+-+|.. ++|..+.++ |+-. ++..=.+.+ ++|..||+|.+. ++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNEFDAVTMFFSTI 116 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhc-ccccccchHhhhhhhh
Confidence 345799999999999999999875 67777766 788776655 5432 333223443 467999999884 566
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.+.. ..++..+|-++.|+|||||.|||.-
T Consensus 117 ~~~~-~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 117 MYFD-EEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6543 2466789999999999999999853
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.24 E-value=2.1e-06 Score=90.80 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcC-c-c---cCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI--PAISAVMG-T-K---RLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~d-a-e---~LPfpd~SFDlV~ 536 (870)
++.+|||+.||+|.|+..++.. .|+++|+++..+..+..+.. ..++ ..+.++.+ . . .+.-....||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4789999999999999876543 79999999999988885544 3444 24444444 3 2 2223456899999
Q ss_pred ecccccccc--------cChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 537 CARCRVPWH--------IDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 537 Ss~~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+..-.+.-. .+...++..+.++|+|||+|++++..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 853211100 12356888899999999999998543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.22 E-value=1.6e-07 Score=91.57 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=68.7
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCccc---eeccccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLFG---IYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||+|||.|.++.+|++++. .|+-+|.. ..|..+ .+.|+-. ...|.++. .++.+||+|.|.++|-+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEEEeeeeec
Confidence 499999999999999999975 45556654 555543 3445543 22233332 35699999999998877
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
... -.+..+|-++-|+|||||++++.
T Consensus 108 ~~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 LEA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp SCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 643 35667999999999999999987
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=1.1e-07 Score=97.89 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=64.6
Q ss_pred cccccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhcccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
.-..|||+|||.|.|+.+|++. ++ +++-+|.. ..+..+.+|+- +..+..=.+.++.-+.+||+|.+.+.+.
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~-- 158 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-- 158 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH--
Confidence 3467999999999999999876 44 33444544 77777777753 3333334455543359999998744332
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.+-||.|||||||++|+..+
T Consensus 159 --------~~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 159 --------KAEELARVVKPGGWVITATP 178 (268)
T ss_dssp --------CHHHHHHHEEEEEEEEEEEE
T ss_pred --------HHHHHHHHhCCCcEEEEEee
Confidence 26799999999999999854
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.21 E-value=7.7e-08 Score=97.43 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=69.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceeccccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
..|||+|||.|+++..|++.++ -+|+-+|.. .+|..+.+|- . +-.++.=+...+.. ..+||+|.|.+++
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 4699999999999999988765 256667765 7888887662 2 22223223333332 4799999887666
Q ss_pred ccccC-CcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKN-RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~-rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-+.-. .=.+..+|-+|.|+|||||+||++-
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 55422 2245679999999999999999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.6e-06 Score=87.30 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e~LP-----fpd~SFD 533 (870)
..++||+||||+|.-+..|+.. +|+++|+++.....|+..+ ...|+. .+.+..+. +.++ ...++||
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~-~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHH-HhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 4689999999999988888763 8999999999888887444 444543 34444442 2232 3467899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+|+.. +........+..+.++|+|||++++.....
T Consensus 138 ~ifiD----~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 138 VAVVD----ADKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEEC----SCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEEe----CCHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 99985 244556788999999999999999985443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.20 E-value=7.8e-08 Score=98.39 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=84.1
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.-.+|||+|||.|.++..|+....- +|.-+|.. ..|..+.++ +.+-+++.=.+.|..-+.+||+|.+..+|-+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 3457999999999999998765321 23333433 566666554 3444444433444433589999999999877
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecChh----------------hHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS----------------AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~~~----------------~~~~~~~~~~~l~W~~~~~ 845 (870)
+.. =.+..+|.++-|+|+|||++||.+... ....++.+++.-.+++...
T Consensus 171 l~d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 171 LTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cch-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 643 135578999999999999999986421 1467788888778877543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.19 E-value=1.7e-07 Score=94.03 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=70.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Ccc-ceec-cccccccCCCCccchhhhh-cccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLF-GIYH-DWCESFSTYPRSYDLLHAD-HLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gli-g~~h-~wce~f~tyPrtyDllHa~-~lfS 794 (870)
++|||+|||.|.++..|++++. .|+-+|.. .+|.++.+| |+- -+++ |+. .|. .+++||+|=|. ++|.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTGGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh-hhc-ccccccccceeeeeee
Confidence 5799999999999999999986 67778876 788887765 442 2222 232 222 36899987653 5666
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.....-.+..+|-+|-|+|+|||.|||.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 6655456777999999999999999974
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=6.1e-06 Score=80.23 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||++||+|.++...+.+ .|+.||.++..+..++... ...+......+.. + ..+......||+|++..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~-~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP-- 119 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNL-ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP-- 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC--
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHH-hhccccceeeeeecccccccccccccCEEEEcC--
Confidence 4679999999999999877665 7999999999888777544 4455555444443 2 33444567899999974
Q ss_pred cccccCh-HHHHHHHHh--hcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
+|.... ..++..+.+ .|+|+|++++.
T Consensus 120 -PY~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 120 -PFRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -ccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 444433 566666554 69999999986
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.18 E-value=2.3e-06 Score=86.89 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
...++|||||||+|.++..|+++ ++++.|+.+. +.. ....+.+.++.+...-|.|. .|+++....+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~-------~~~~~r~~~~~~d~~~~~P~--ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED-------APSYPGVEHVGGDMFVSIPK--ADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT-------CCCCTTEEEEECCTTTCCCC--CSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh-------cccCCceEEecccccccCCC--cceEEEEEEe
Confidence 34679999999999999988874 8899998653 211 12224555666543335554 3555655554
Q ss_pred cccccC-hHHHHHHHHhhcCCCcEEEEEECCCcCc----hhHHHHHHHhhcccc---cccchhHHHHHHHHHhhccceEE
Q 002884 542 VPWHID-GGKLLLELNRVLRPGGYFVWSATPVYQK----LGEDVEIWNAMSNLT---VSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 542 lhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t----L~El~~~w~~~~~la---~~mcW~~va~~~~~L~daGfaI~ 613 (870)
..|..+ ...+|++++++|+|||.+++........ .......+-.+.-+. .... +...+....+.++||...
T Consensus 150 h~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~e-rt~~e~~~ll~~AGf~~v 228 (243)
T d1kyza2 150 HDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE-RTQKEFEDLAKGAGFQGF 228 (243)
T ss_dssp TTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCC-EEHHHHHHHHHHHCCSCE
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCc-CCHHHHHHHHHHcCCCcE
Confidence 555432 3789999999999999999875433211 111111111111111 1111 123355667889999877
Q ss_pred E
Q 002884 614 R 614 (870)
Q Consensus 614 r 614 (870)
+
T Consensus 229 k 229 (243)
T d1kyza2 229 K 229 (243)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-07 Score=94.85 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=69.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC------ccceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG------LFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG------lig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
.+|||+|||+|.+|.+|++.+. -+|+-++.. ..+..+.++. +..+.+++..-...+| .+||+|-.+.+.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 4699999999999999988754 244444443 5677766654 2334556777677777 6888875444443
Q ss_pred cc--cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QL--KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~--~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. .+.-....+|-|+-|+|||||.|++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 33 223345679999999999999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.16 E-value=2.1e-07 Score=96.20 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=68.3
Q ss_pred cccccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccCCCCccchhhhhc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+-+.|||+|||+|.++..|++. +. +|+-+|.. ..+..+.++ |+ +-.++.-.+.+ +++.+||+||+.+
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~~ 102 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHA 102 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEES
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEeh
Confidence 4467999999999999888764 33 23334543 555555433 43 22233333443 4578999999999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+|.+.. +...+|-+|-|+|||||++|+.++
T Consensus 103 ~l~~~~---d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 103 FLLHMT---TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CGGGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 987765 366799999999999999999864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=8.9e-06 Score=83.06 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhhhc-CCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-
Q 002884 449 LHYIDFIQQAVPKIAW-GKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG- 521 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~-g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d- 521 (870)
..|...|...+..... ..+..+|||||||+|.++..|+. .+++|+|+++..+..|+.. +...++.. ...+..
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N-~~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH-HHHhCCCcceeeeeec
Confidence 3456666666543221 23456999999999988877765 3999999999999998854 44455543 323222
Q ss_pred c-ccC-----CCCCCceeEEEecc
Q 002884 522 T-KRL-----QFPRNVFDLVHCAR 539 (870)
Q Consensus 522 a-e~L-----Pfpd~SFDlV~Ss~ 539 (870)
. ..+ ...++.||+|+||.
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNP 144 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNP 144 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECC
T ss_pred cHHhhhhhhhhcccCceeEEEecC
Confidence 1 111 23456899999985
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.8e-07 Score=94.20 Aligned_cols=96 Identities=10% Similarity=0.216 Sum_probs=66.8
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCC-CChhHHHhh-----Cccceecccccc---------ccCC-CC
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSP-DTLPIIYER-----GLFGIYHDWCES---------FSTY-PR 782 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~-~tl~~i~eR-----Glig~~h~wce~---------f~ty-Pr 782 (870)
+|||+|||.|.|+..|+.. +-....++-+|-. .+|..+.+| .+..+--+|... ...+ +.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 5999999999997777542 1123455666655 667666654 233332233221 1234 48
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+||+|+|.++|-... ++..+|-+|.|+|+|||+++|.
T Consensus 123 ~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999998887765 4778999999999999999887
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.13 E-value=3.1e-06 Score=86.22 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||||||+|.++..++++ ++++.|+.. .+.. + ...+.+.++.++..-|.+ .+|++++..++.
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-----~--~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVEN-----L--SGSNNLTYVGGDMFTSIP--NADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT-----C--CCBTTEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHh-----C--cccCceEEEecCcccCCC--CCcEEEEEeecc
Confidence 3578999999999999888764 888999843 2211 1 122445566554333444 479999987755
Q ss_pred ccccCh-HHHHHHHHhhcCCC---cEEEEEECCCcCch--hHH--HHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDG-GKLLLELNRVLRPG---GYFVWSATPVYQKL--GED--VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~-~~vL~Ei~RVLKPG---G~Lv~S~~p~~~tL--~El--~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|.++. ..+|+.++++|+|| |.+++......... ... ...+-.+.-+...-..+...+....+.++||.+.+
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 554333 68999999999999 77777644332211 111 11111111111111222344667778899998766
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=7e-06 Score=86.65 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=75.4
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCc-c---
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGT-K--- 523 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~da-e--- 523 (870)
...+.+.+.. ..++.+|||++||+|.++..++.. .|++||+|+..+..|+.+... .++. .+.++.++ .
T Consensus 120 r~~~~~~~~~---~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 120 WEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp HHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHHHhh---ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhH
Confidence 3445554443 235789999999999999888765 899999999999998865544 3443 34455442 1
Q ss_pred -cCCCCCCceeEEEeccccc-------ccc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 524 -RLQFPRNVFDLVHCARCRV-------PWH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 524 -~LPfpd~SFDlV~Ss~~al-------hw~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+......||+|++..=.+ .|. .+...++..+.++|+|||.|++.+
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 1223357899999842111 121 122456677889999999876653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.12 E-value=1.3e-07 Score=96.72 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=72.9
Q ss_pred cccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhCccceecccc-ccccCCCCccchhhhhc
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWC-ESFSTYPRSYDLLHADH 791 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wc-e~f~tyPrtyDllHa~~ 791 (870)
+.|..++.|||+|||.|.++++|++. .+.++.+ |-........+.+.|+...+.-.. ..|.+.|..||++.+.+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~ 155 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 155 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence 56788999999999999999999865 3445443 221122333455667655333222 23445678899999888
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+|-.+.. -....+|-++-|+|||||.|+|.|.
T Consensus 156 vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNWSD-EDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccCc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence 8766542 1234689999999999999999875
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=2.1e-06 Score=84.95 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=52.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+.+|||+|||+|.++..++.+ .|+|+|+++.++..+.. .+...+....+...+...+ +..||+|+++.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~-N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEF---NSRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGC---CCCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHH-HHHHcCCCceEEECchhhh---CCcCcEEEEcC
Confidence 5789999999999988766554 79999999998888764 4555666655555555444 45699999984
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=5.5e-07 Score=92.69 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=81.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCcccee-c-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGLFGIY-H-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGlig~~-h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
..|||+|||.|.++.+|+..+. .|+-+|.. ..+..+. ..|+-..+ + ++. ..+| .+||+|.|+.++.
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~---~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE---AALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH---HHGGGCCEEEEEEECCHH
T ss_pred CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEecccc---ccccccccchhhhccccc
Confidence 3599999999999999988874 34555544 5555544 34653322 2 222 2344 7899998854433
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.+..++-++-|+|||||++|+++-. +-...+...++...|++......+.=..|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence 2456788999999999999998632 335778888899999876543333223444443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.04 E-value=7.8e-06 Score=85.58 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=76.1
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc----C-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE----R-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK 523 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~----r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae 523 (870)
.++...+..+....++.+|||.|||+|.|+..+.. + .++|+|+++.++..|..... ..+........+.
T Consensus 103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~- 180 (328)
T d2f8la1 103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDG- 180 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCT-
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhcccc-
Confidence 34444444444445678999999999998877643 1 69999999998887765433 3445454444443
Q ss_pred cCCCCCCceeEEEeccccccccc----------------C-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 524 RLQFPRNVFDLVHCARCRVPWHI----------------D-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 524 ~LPfpd~SFDlV~Ss~~alhw~~----------------D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
....+...||+|+++.-...... + ...++..+.+.|+|||++++..+
T Consensus 181 ~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 181 LANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp TSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 22345578999999842111100 0 12468889999999999887744
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.03 E-value=5.4e-06 Score=82.21 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+.+|||+|||+|.++..++.. .|+++|+++.++..|+. ......+...+...++ +.||+|+++.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~-----N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR-----NCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHH-----HCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHH-----ccccccEEEEehhhcC---CcceEEEeCc
Confidence 5789999999999887665543 79999999987655542 2222344555555543 6799999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=7.6e-06 Score=84.83 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCc--ccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGT--KRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~da--e~LPfpd~SFDlV~Ss~~ 540 (870)
...+|||+|||+|..+..++. ..|+++|+++..+..|+ +.+...++.... +..+. ..++...+.||+|+||.-
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 356899999999987766654 38999999999998888 456666765443 33333 223333478999999843
Q ss_pred ccccc------------------cChHHHHHH-HHhhcCCCcEEEEE
Q 002884 541 RVPWH------------------IDGGKLLLE-LNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~------------------~D~~~vL~E-i~RVLKPGG~Lv~S 568 (870)
.+.-. .|.-.+++. +.+.|+|||+|++.
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 22211 001122222 56789999999997
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=3e-06 Score=83.68 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=70.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC-----CCCCCceeE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL-----QFPRNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L-----Pfpd~SFDl 534 (870)
..++..+||++||+|.++..++++ .|+|+|.++.|+..|+... ...+. ...++.+ ...+ .+..+.||.
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l-~~~~~-r~~~~~~~f~~~~~~~~~~~~~~vdg 98 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSD-RVSLFKVSYREADFLLKTLGIEKVDG 98 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTT-TEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh-ccccc-cccchhHHHhhHHHHHHHcCCCCcce
Confidence 457889999999999988888763 8999999999988877433 22232 3334433 2222 345678999
Q ss_pred EEecccc--ccc------ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 535 VHCARCR--VPW------HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 535 V~Ss~~a--lhw------~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+.-... .+. .......|..+.++|+|||.+++..
T Consensus 99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 9864321 111 0112578899999999999999873
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.02 E-value=2.4e-07 Score=87.76 Aligned_cols=95 Identities=6% Similarity=-0.045 Sum_probs=65.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c--------------cceeccccccccCCC-Cc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L--------------FGIYHDWCESFSTYP-RS 783 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l--------------ig~~h~wce~f~tyP-rt 783 (870)
-|||+|||.|-+|..|++++. .|+-+|-. ++|..+.+|- + +-.+..=......++ ..
T Consensus 23 rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 99 (201)
T d1pjza_ 23 RVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 99 (201)
T ss_dssp EEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred EEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence 499999999999999999986 44555544 6777776652 1 111111112223333 68
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
||+|.+.++|-.... -....++-+|-|+|+|||.+++.
T Consensus 100 ~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 100 CAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred eeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 999988877765442 34557899999999999998876
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.98 E-value=1.4e-06 Score=86.73 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=79.4
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCCC-----CChhHHHhhCc--cceeccccccccC-CC-Cccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-----DTLPIIYERGL--FGIYHDWCESFST-YP-RSYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-----~tl~~i~eRGl--ig~~h~wce~f~t-yP-rtyDllHa~~l 792 (870)
.|||+|||.|.|..+|+.. .. |++-++-. ..+.-+.+.|| +-++|.=.+.+.. +| .++|.||. +
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i--~ 108 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL--N 108 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE--E
T ss_pred eEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc--c
Confidence 4999999999999999765 44 55555543 23445667787 5556643333443 45 89999986 3
Q ss_pred ccc-------ccCCcChhhHHHhhhhcccCCcEEEE-ecChhhHHHHHHHHHcCCceEEE
Q 002884 793 FSQ-------LKNRCKLVPVMAEVDRIVRPGGKLIV-RDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 fS~-------~~~rc~~~~vl~EmDRILRPgG~~ii-rd~~~~~~~~~~~~~~l~W~~~~ 844 (870)
|.. .+.|=--..+|-++.|+|+|||.|+| ||..++...+...+....|....
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 432 11222225789999999999999977 68888777777777777776543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.97 E-value=9.4e-07 Score=87.98 Aligned_cols=115 Identities=7% Similarity=0.085 Sum_probs=76.1
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCCC-CC----hhHHHhhCc--cceeccccccc-cCCC-Cccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DT----LPIIYERGL--FGIYHDWCESF-STYP-RSYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~t----l~~i~eRGl--ig~~h~wce~f-~tyP-rtyDllHa~~l 792 (870)
.|||+|||.|.|...|+.. +. |++-++.. +. +..+.++|| +-+++.=...+ ..+| .++|.|+....
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 4899999999999999765 33 55566644 33 344667787 44444322223 2354 89998776444
Q ss_pred cccccC----CcCh-hhHHHhhhhcccCCcEEEE-ecChhhHHHHHHHHHcCCce
Q 002884 793 FSQLKN----RCKL-VPVMAEVDRIVRPGGKLIV-RDEPSAVTEVENFLKSLHWE 841 (870)
Q Consensus 793 fS~~~~----rc~~-~~vl~EmDRILRPgG~~ii-rd~~~~~~~~~~~~~~l~W~ 841 (870)
.-..+. |..+ ...|-+|-|+|+|||.|+| +|...+.+.+...+......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~ 163 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLL 163 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCc
Confidence 332221 2222 4789999999999999977 58888878777777655544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=7e-07 Score=92.14 Aligned_cols=98 Identities=17% Similarity=0.285 Sum_probs=68.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccceec-------cccc--cccCCCCccchh
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYH-------DWCE--SFSTYPRSYDLL 787 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h-------~wce--~f~tyPrtyDll 787 (870)
.++|||+|||.|.++..|++.+. +|+-+|.. .+|.++.++ ++...++ +|-. .-.++..+||+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 46799999999999999999985 67788876 777766543 3322221 2221 112344799998
Q ss_pred hhhc-ccccccC----CcChhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADH-LFSQLKN----RCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~-lfS~~~~----rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.|.+ .|.++.. .-.+..+|-+|-|+|||||.|||.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 8643 5555432 123556999999999999999996
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.91 E-value=1.7e-05 Score=77.12 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-cEE-EEcCcc-cC---CCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-AIS-AVMGTK-RL---QFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~~~-~v~dae-~L---Pfpd~SFDlV~S 537 (870)
.+.+|||++||+|.++...+.+ .|+++|.++..+..++.... ..+.. ... ...+.. .+ .-....||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~-~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhh-hhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5789999999999999877765 79999999998887775443 33333 333 333432 22 224567999998
Q ss_pred ccccccccc-ChHHHHHHHHh--hcCCCcEEEEE
Q 002884 538 ARCRVPWHI-DGGKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~-D~~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
.. +|.. +....|..+.. .|+|||++++.
T Consensus 120 DP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 120 DP---PYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ch---hhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 64 4543 34667777654 69999999986
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.86 E-value=1.5e-05 Score=80.54 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--ccCC------CCCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--KRLQ------FPRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e~LP------fpd~SF 532 (870)
..++||+||+++|.-+..|+. ..|+++|.++.....|+..+. +.|.. .+.++.+. ..|+ ...++|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~-~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH-HhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 468999999999987777764 389999999998877774444 44554 34444442 2332 125689
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+.- +++......+..+.+.|+|||++++-...
T Consensus 138 D~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 138 DFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp SEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred eEEEec----cchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 999985 35566788999999999999999997543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.84 E-value=3.4e-06 Score=83.94 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=65.1
Q ss_pred ccccccccchhHHhhhcCC---C-eEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 724 NVMDMRAVYGGFAAALKDL---Q-VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~-vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
.|||+|||.|++..+|.+. + |+.+-+.|.-...-...+-.|+.+..++.-+.....|+..+|.+. -+|......
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd--~v~~~~~~~ 136 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD--LIYQDIAQK 136 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE--EEEECCCST
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE--EEEecccCh
Confidence 4999999999999998764 2 444433332111122334556777677665666667776666543 345544444
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
.....+|.|+.|+|||||+++|.+
T Consensus 137 ~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 137 NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCeEEEEE
Confidence 566678999999999999999874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.1e-06 Score=84.29 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=79.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-c----------------------cceec-cccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-L----------------------FGIYH-DWCESF 777 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-l----------------------ig~~h-~wce~f 777 (870)
.-|||+|||.|-.+.+|++++. .|+-+|.. ..+..+.++- . +-++. |+.+--
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 3499999999999999999987 66777766 5555554432 1 11122 222222
Q ss_pred cCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC----------hh--hHHHHHHHHHcCCceEEE
Q 002884 778 STYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE----------PS--AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 778 ~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~----------~~--~~~~~~~~~~~l~W~~~~ 844 (870)
...+.+||+|...++|-.... =....++.+|-|+|||||++++... .. ..+.|+.++.. .|++..
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred ccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 334579999988777766543 3456799999999999998777621 11 25678888876 477654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.77 E-value=2.5e-05 Score=75.93 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
..++.+|||.|||+|.|+..+.++ .++|+|+++..+..+ .......+..........||+|+++.
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~~~~~fd~ii~np 86 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPGEAFDLILGNP 86 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccccccccceecccC
Confidence 356789999999999998777642 699999998743211 11222333322233457899999974
Q ss_pred cccccc---------------------------cCh-HHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWH---------------------------IDG-GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~---------------------------~D~-~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
-..... .+. ..++..+.+.|+|||++++..+
T Consensus 87 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 87 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 321100 001 2456788999999999988743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.74 E-value=5.4e-06 Score=86.82 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=66.4
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCC----CChhHHHhhCccc---eeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSP----DTLPIIYERGLFG---IYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~----~tl~~i~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
++|||+|||+|.++-.+++.+- -|. -++.. .....+...|+.. +++.-.+.+..-+..||+|-+.-+..
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~---avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVI---GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEE---EEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEE---EEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4599999999999888877652 232 22222 2334455567744 44443444443448999998876666
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+.....++.++.+++|+|+|||.+|-.
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 6666567888999999999999998843
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=3.9e-06 Score=87.45 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=67.7
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCC----CChhHHHhhCcc---ceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSP----DTLPIIYERGLF---GIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~----~tl~~i~eRGli---g~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|.++..+++.+. -|. -++.. ..+..+...|+. -+++.-.+.+..-+..||+|-+.-+++
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~---aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVL---GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEE---EEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEE---EEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 4599999999999998887753 232 22322 234556677764 444444444443348999998877777
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.......+..++..++|+|||||.+|-.
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred ecccccccHHHHHHHHhcCCCCcEEecc
Confidence 6655556777888999999999999843
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.73 E-value=2.9e-05 Score=80.34 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHH---------cCCCcEE
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALE---------RGIPAIS 517 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~e---------rgl~~~~ 517 (870)
.|.+.|... +. ......++||.||+|.|..+..+++. +|+++|++|..+..|+.-+... ..-+.+.
T Consensus 57 ~Yhe~l~~~-~l-~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~ 134 (276)
T d1mjfa_ 57 SYHEPLVHP-AM-LAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK 134 (276)
T ss_dssp HHHHHHHHH-HH-HHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEE
T ss_pred HHHHHhhcc-hh-hcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCce
Confidence 455555442 22 22345789999999999999888765 7999999999887765322111 1123333
Q ss_pred EE-cCcccCCCCCCceeEEEecccccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 518 AV-MGTKRLQFPRNVFDLVHCARCRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 518 ~v-~dae~LPfpd~SFDlV~Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+ .++...--.++.||+|++-. .-+.... -..++..+.++|+|||+|++..
T Consensus 135 i~~~Da~~~l~~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 135 LTIGDGFEFIKNNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEESCHHHHHHHCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEChHHHHHhccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 33 34321111256899999842 1222111 1578999999999999999763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=5.9e-06 Score=84.26 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=80.3
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh--Cccce-----------------------------
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER--GLFGI----------------------------- 769 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR--Glig~----------------------------- 769 (870)
=+.|||+|||.|.+...++...+ .+|+-+|-. +++.++..+ .-.+.
T Consensus 55 g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 45699999999988766555543 477777765 777766432 11111
Q ss_pred -----e-cccccc-----ccCCCCccchhhhhccccccc-CCcChhhHHHhhhhcccCCcEEEEecChh-----------
Q 002884 770 -----Y-HDWCES-----FSTYPRSYDLLHADHLFSQLK-NRCKLVPVMAEVDRIVRPGGKLIVRDEPS----------- 826 (870)
Q Consensus 770 -----~-h~wce~-----f~tyPrtyDllHa~~lfS~~~-~rc~~~~vl~EmDRILRPgG~~iird~~~----------- 826 (870)
+ +|.... ....+..||+|-+..+++... ++.++..+|-+|-|+|||||+||+.+...
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 1 122221 112246899988866665543 44567889999999999999999986321
Q ss_pred -----hHHHHHHHHHcCCceEE
Q 002884 827 -----AVTEVENFLKSLHWEIL 843 (870)
Q Consensus 827 -----~~~~~~~~~~~l~W~~~ 843 (870)
..+.|+.++..-.-+++
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEE
Confidence 25888999988887764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=7.8e-05 Score=77.96 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCccccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC--
Q 002884 440 GGTQFIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG-- 512 (870)
Q Consensus 440 ggt~F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg-- 512 (870)
|..++.... ..|.+.|.. ++... ....++||-||.|.|..++.+++. .|+++|++|.++..+..-+....+
T Consensus 63 g~~q~~~~De~~YhE~l~h-~pl~~-~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~ 140 (295)
T d1inla_ 63 GITMTTEKDEFMYHEMLAH-VPMFL-HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF 140 (295)
T ss_dssp TEEEEETTTHHHHHHHHHH-HHHHH-SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG
T ss_pred CEEEEecCchhhhhhhhcc-hhHhh-CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc
Confidence 333444333 345554443 23333 235789999999999999999874 699999999988877644333221
Q ss_pred -CCcEE-EEcCc-ccCCCCCCceeEEEecccccccc-----cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 513 -IPAIS-AVMGT-KRLQFPRNVFDLVHCARCRVPWH-----IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 513 -l~~~~-~v~da-e~LPfpd~SFDlV~Ss~~alhw~-----~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-+... .+.|+ .-+.-..+.||+|++-. .-++. -....++..+.+.|+|||+|++..
T Consensus 141 ~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 141 DDPRAEIVIANGAEYVRKFKNEFDVIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp GCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcEEEhhhHHHHHhcCCCCCCEEEEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 23333 34443 22333457899999752 12221 112689999999999999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=4.6e-06 Score=87.77 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=65.9
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCC----CChhHHHhhCccce---eccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSP----DTLPIIYERGLFGI---YHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~----~tl~~i~eRGlig~---~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|.++..+++.+. -|.- ++.. -....+...|+... ++.-.+.+..-+..||+|-+.-++.
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~a---vd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIG---VDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEE---EESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEE---EeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 4599999999999988887753 2222 2222 23445667787553 4433343332238999998877776
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLI 820 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~i 820 (870)
....--.+..++.+++|+|+|||.+|
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 66555667789999999999999887
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.70 E-value=7.8e-06 Score=82.53 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=80.5
Q ss_pred cccccccccccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCC---Cccch
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP---RSYDL 786 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP---rtyDl 786 (870)
+++.-+.. |||+|||.|+++.+|.+. .|+.+-+.|.-....+..+..|+.+-.++.-......|+ ..+|+
T Consensus 69 l~i~pG~~--VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPGKS--VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCTTCE--EEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccCCCCE--EEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 34554544 999999999999999864 256555554433333344445564433332222223343 56676
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec----------ChhhHHHHHHHHHcCCceEEEe-e---cCCCce
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD----------EPSAVTEVENFLKSLHWEILFA-F---SKDQEG 852 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird----------~~~~~~~~~~~~~~l~W~~~~~-~---~~~~e~ 852 (870)
|+++ ....-....+|.++.|+|+|||+++|.. +..+...++.+++. .+++.-. + .+....
T Consensus 147 i~~d-----~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~ 220 (227)
T d1g8aa_ 147 IFED-----VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHA 220 (227)
T ss_dssp EEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEE
T ss_pred EEEE-----ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceE
Confidence 6552 2111234568999999999999999862 23344556665554 5666432 1 122346
Q ss_pred EEEEEeC
Q 002884 853 VLSAQKG 859 (870)
Q Consensus 853 iL~~~K~ 859 (870)
++|++|+
T Consensus 221 ~vv~rK~ 227 (227)
T d1g8aa_ 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7888885
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=5.8e-05 Score=79.41 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-C---CCcEEE-Ec
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-G---IPAISA-VM 520 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-g---l~~~~~-v~ 520 (870)
.|.+.|.. ++.+. ....++||.||+|.|..+..+++. +|+++|+++..+..++..+..-. + -+.+.. +.
T Consensus 62 ~Yhe~l~h-~~l~~-~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~ 139 (312)
T d1uira_ 62 IYHETLVH-PAMLT-HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139 (312)
T ss_dssp HHHHHHHH-HHHHH-SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHHHHhh-hhhhh-CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc
Confidence 35555544 23322 345789999999999999888764 79999999998877765443211 1 133333 44
Q ss_pred Cc-ccCCCCCCceeEEEecccccccccC-------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GT-KRLQFPRNVFDLVHCARCRVPWHID-------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 da-e~LPfpd~SFDlV~Ss~~alhw~~D-------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+ .-+.-.+..||+|++-. .-++..+ -..+++.+.|+|+|||+|++..
T Consensus 140 Da~~~l~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 140 DARAYLERTEERYDVVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CHHHHHHHCCCCEEEEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHHHHhhhcCCcccEEEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 43 22222356799999742 1222211 1578999999999999999753
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00022 Score=75.02 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=80.1
Q ss_pred ccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC
Q 002884 444 FIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG 521 (870)
Q Consensus 444 F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d 521 (870)
|......-.+.|.+.+.......+..+|||+-||+|.|+..|++. .|+|+|+++..+..|+ +.+...++.+..++.+
T Consensus 189 FfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~ 267 (358)
T d1uwva2 189 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHE 267 (358)
T ss_dssp CCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEEC
T ss_pred hhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeec
Confidence 443333333334333333333445789999999999999999986 8999999999888887 4667778887777765
Q ss_pred c--ccC---CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 522 T--KRL---QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 522 a--e~L---Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ..+ +.....||+|+...-. .-...++..+.+ ++|.-++++|
T Consensus 268 ~~~~~~~~~~~~~~~~d~vilDPPR----~G~~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 268 NLEEDVTKQPWAKNGFDKVLLDPAR----AGAAGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp CTTSCCSSSGGGTTCCSEEEECCCT----TCCHHHHHHHHH-HCCSEEEEEE
T ss_pred chhhhhhhhhhhhccCceEEeCCCC----ccHHHHHHHHHH-cCCCEEEEEe
Confidence 3 222 2335679999875311 112456666665 4788888888
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.65 E-value=3.4e-06 Score=85.24 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=78.6
Q ss_pred ccccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCC-Cccchhhhh
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
.+..+.. |||+|||.|.++.+|.+. .|+.+.+.|.-...-...+..|+.+-.++.-+.....|+ .++|++-+
T Consensus 71 ~ikpG~~--VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i- 147 (230)
T d1g8sa_ 71 PIKRDSK--ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI- 147 (230)
T ss_dssp CCCTTCE--EEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE-
T ss_pred CCCCCCE--EEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe-
Confidence 4444433 999999999999999864 256666655432222233344565544553334445554 67775443
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecC----------hhhHHHHHHHHHcCCceEEEe
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE----------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~----------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
|...........+|.++.|+|||||+++|.+. ..+...+...++.-..++.-.
T Consensus 148 --~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 148 --YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp --EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred --eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 33343445677889999999999999999732 233466667777666766543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.00017 Score=71.74 Aligned_cols=95 Identities=18% Similarity=0.077 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHHh----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLF----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||+|.|.-|..|+ +.+++.+|....-+.... +.+.+.++.++..+.+ .+.+. ....||+|+|..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA-- 140 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHH-HHHHHcCCcceeeeccchhhhc-cccccceehhhh--
Confidence 35699999999997665554 348999999988554433 4556678876666654 45553 456899999863
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ .....++.-+...|++||.+++.
T Consensus 141 ~---~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 141 F---ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp S---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred h---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 2 35778899999999999999986
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.63 E-value=0.0002 Score=73.97 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEEEE-cC
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAISAV-MG 521 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~~v-~d 521 (870)
.|.+.+... +... ....++||-||.|.|..++.+.+. +|+.+|+++..+..|+.-+....+ -+....+ .|
T Consensus 60 ~Yhe~l~h~-~l~~-~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D 137 (274)
T d1iy9a_ 60 VYHEMVAHV-PLFT-HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137 (274)
T ss_dssp HHHHHHHHH-HHHH-SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred hchhhhccc-hhhc-cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech
Confidence 455544332 3222 345789999999999999998874 799999999988877654433222 2333333 34
Q ss_pred c-ccCCCCCCceeEEEeccccccc----ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 522 T-KRLQFPRNVFDLVHCARCRVPW----HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 522 a-e~LPfpd~SFDlV~Ss~~alhw----~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .-+--..+.||+|+.-. .-++ +-....++..+.++|+|||+|+...
T Consensus 138 ~~~~l~~~~~~yDvIi~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 138 GFMHIAKSENQYDVIMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp SHHHHHTCCSCEEEEEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHhhcCCCCCEEEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 3 22333457899999752 1221 1123688999999999999999863
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.61 E-value=0.00023 Score=73.99 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcE-EEEcC
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAI-SAVMG 521 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~-~~v~d 521 (870)
.|.+.+... +... ....++||-||.|.|..++.+.+. .|+++|+++..+..++.-+.... .-+.. ..+.|
T Consensus 65 ~Yhe~l~h~-~~~~-~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D 142 (290)
T d1xj5a_ 65 AYQEMITHL-PLCS-IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD 142 (290)
T ss_dssp HHHHHHHHH-HHTT-SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred HHHHHHhhH-HHhh-CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence 355444433 3222 235689999999999999998875 69999999998877765332211 12333 34444
Q ss_pred c-ccC-CCCCCceeEEEeccccccccc--C--hHHHHHHHHhhcCCCcEEEEEE
Q 002884 522 T-KRL-QFPRNVFDLVHCARCRVPWHI--D--GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 522 a-e~L-Pfpd~SFDlV~Ss~~alhw~~--D--~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .-+ -..++.||+|+.-.. -++.. . -..++..+.++|+|||+|++..
T Consensus 143 a~~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 143 GVAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp HHHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHhhccccCccEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 3 223 234568999997521 12111 1 2689999999999999999974
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00016 Score=75.20 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcEEE-EcCc-ccCCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAISA-VMGT-KRLQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~~~-v~da-e~LPfpd~SFDlV~ 536 (870)
...++||-||.|.|..++.+.+. +|+++|+++..+..++.-+.... .-+.... +.|+ .-+--..+.||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35689999999999999999875 89999999998888765443211 1233334 3343 22323456899999
Q ss_pred eccccccccc----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+-. .-+... .-..++..+.|+|+|||+|++..
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 852 111111 11467999999999999999874
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.47 E-value=0.00011 Score=77.24 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcEEEEc-C
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAISAVM-G 521 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~~~v~-d 521 (870)
.|.+.|... +... ....++||-||.|.|..++.+++. +|+.+|+++..+..+..-+.... .-+....+. |
T Consensus 91 ~YhE~l~h~-pl~~-~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D 168 (312)
T d2b2ca1 91 SYQEMLAHL-PMFA-HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168 (312)
T ss_dssp HHHHHHHHH-HHHH-SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred HHHHHhhhH-HHhc-CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch
Confidence 455555433 3222 335789999999999999999874 79999999998877663222111 113334443 3
Q ss_pred c-ccCCCCCCceeEEEeccccccccc----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 522 T-KRLQFPRNVFDLVHCARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 522 a-e~LPfpd~SFDlV~Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .-+--..+.||+|++-.. -+... ....++..+.|+|+|||+|+...
T Consensus 169 a~~~l~~~~~~yDvII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 169 GFEFLKNHKNEFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp HHHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCCCCEEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 2 222234578999998521 11111 11578999999999999999873
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.45 E-value=1.8e-05 Score=76.31 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=74.9
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||+|||+|+++.+|+...- .|+-+|.. +.+..+.+ .|| +-+++.....+..=...||+|-+.+.-
T Consensus 36 ~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~-- 110 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG-- 110 (186)
T ss_dssp EEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT--
T ss_pred EEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc--
Confidence 499999999999999987742 34445554 55555544 455 334554333332223789987654321
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~~ 843 (870)
-.+..++-++-|.|||||++++... .+....+...++...|...
T Consensus 111 ----~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 111 ----GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ----TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred ----ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 2467899999999999999998764 3456667777887777554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.37 E-value=7.5e-05 Score=76.30 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=65.4
Q ss_pred ccccccccchhHHhhhcCC----C-eEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCCCccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL----Q-VWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~----~-vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyPrtyDllHa 789 (870)
.|||+|||.|+++.+|+.. + |.. ++.. ..+..+.++ |. +-++| |+++.+ ...+||+|..
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g~V~~-----vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~~~~fD~V~l 160 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKGTLTV-----VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--SDQMYDAVIA 160 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSEEEE-----ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--CSCCEEEEEE
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCcEEEE-----EECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--ccceeeeeee
Confidence 4999999999999888743 2 332 3433 455555542 32 34444 576653 2478998765
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCce
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWE 841 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~ 841 (870)
+ --....+|-++.|+|||||.+++.-+. .-+.++...++.-.|.
T Consensus 161 d--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 161 D--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp C--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred c--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 2 123446899999999999999987553 2244444445555554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.35 E-value=0.00021 Score=72.06 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
..++.+|||||||+|.++..|++. .|+++++++.++...+..+ .+.++..++. |...++++......|+++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~---~~~~n~~i~~~D~l~~~~~~~~~~~vv~N--- 92 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKL---VDHDNFQVLNKDILQFKFPKNQSYKIFGN--- 92 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHT---TTCCSEEEECCCGGGCCCCSSCCCEEEEE---
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHh---hcccchhhhhhhhhhccccccccceeeee---
Confidence 356899999999999999999875 8999999998765544322 1234444444 456666665545566666
Q ss_pred ccccc
Q 002884 542 VPWHI 546 (870)
Q Consensus 542 lhw~~ 546 (870)
++|..
T Consensus 93 LPYnI 97 (235)
T d1qama_ 93 IPYNI 97 (235)
T ss_dssp CCGGG
T ss_pred ehhhh
Confidence 56654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.35 E-value=0.0008 Score=64.80 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCc----ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGT----KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~da----e~LPfpd~SFDlV~S 537 (870)
.+.+|||+-||+|.++...+.+ .|+.||.+...+..... .+...+.. .......+ .........||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~-Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhh-HHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4679999999999999888876 89999999987665553 33333432 23333322 223344567999998
Q ss_pred cccccccccCh-HHHHHHHH--hhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG-GKLLLELN--RVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~-~~vL~Ei~--RVLKPGG~Lv~S 568 (870)
-. +|..+. ..+|..+. ..|+++|++++.
T Consensus 122 DP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DP---PFHFNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ch---hHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 64 454443 56666654 479999999987
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=7.7e-06 Score=81.35 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=54.6
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCC--Cccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP--RSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP--rtyDllHa~~lfS~~ 796 (870)
.|||+|||+|.+++.|... .|+..-+.|.-.......+...|+-.+....+.....+| .+||+|++.+.+..
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~- 156 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDE- 156 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSC-
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHHH-
Confidence 5999999999999988643 244443333211111222233344443333344444454 68999999665542
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+.-++-|.|||||.+|+-
T Consensus 157 --------~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 157 --------VPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp --------CCHHHHHHEEEEEEEEEE
T ss_pred --------hHHHHHHhcCCCcEEEEE
Confidence 334566889999999984
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00053 Score=66.40 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--------CCCCCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--------QFPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--------Pfpd~S 531 (870)
+++.+||||||+.|.|+.++.+. .|+++|+.+. ..++...++.+. ... -+....
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 56889999999999999988763 7999999874 123444444432 110 123567
Q ss_pred eeEEEeccccccccc----Ch-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCARCRVPWHI----DG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~~alhw~~----D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||+|+|-.+ ..... |. ..+|.-+.++||+||.|++-.
T Consensus 89 ~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 89 VQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp EEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 999999532 32221 11 255667789999999999873
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=0.00083 Score=68.04 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchhHHHHh----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCC---CCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLF----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQF---PRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPf---pd~SFDlV~Ss 538 (870)
...+|||||+|.|.-|..|+ +.+++.+|....-...-+ ....+.++.++..+.+ .+.+.. ..+.||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~-~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE-KLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHH-HHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 46799999999997665554 448999999887543322 3455668887766654 344432 24679999996
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. + .....++.-+...|++||.+++.
T Consensus 149 A--v---a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 A--V---ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp C--C---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred h--h---hCHHHHHHHHhhhcccCCEEEEE
Confidence 3 2 46788999999999999999986
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.14 E-value=3e-05 Score=79.02 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=57.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+..+|||||||+|.++..|++. .|+++|+++.++..++..+. ..++..++. |...++++...++.|+++ +
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~~~~~~~~vv~N---L 101 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRYKIVGN---I 101 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEEEEEEE---C
T ss_pred CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh---hccchhhhhhhhhccccccceeeeEeee---e
Confidence 45789999999999999999874 89999999987544321111 223444444 457778888888888887 5
Q ss_pred ccccChHHHHHHH
Q 002884 543 PWHIDGGKLLLEL 555 (870)
Q Consensus 543 hw~~D~~~vL~Ei 555 (870)
+|+.-..-++.-+
T Consensus 102 PY~Ist~il~~~l 114 (245)
T d1yuba_ 102 PYHLSTQIIKKVV 114 (245)
T ss_dssp CSSSCHHHHHHHH
T ss_pred ehhhhHHHHHHHh
Confidence 6654444333333
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00097 Score=68.74 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=73.7
Q ss_pred cCCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC--CCCCCceeEEEe
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL--QFPRNVFDLVHC 537 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L--Pfpd~SFDlV~S 537 (870)
...++.+|||+.+|.|.=+..|+. ..|+++|+++.-+.... +.....|+.+...+...... +.....||.|++
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~ 177 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 177 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEE
Confidence 345788999999999975555543 36999999999877655 45666787766665544222 134567999985
Q ss_pred -ccc----ccccccCh----------------HHHHHHHHhhcCCCcEEEEEECCCc
Q 002884 538 -ARC----RVPWHIDG----------------GKLLLELNRVLRPGGYFVWSATPVY 573 (870)
Q Consensus 538 -s~~----alhw~~D~----------------~~vL~Ei~RVLKPGG~Lv~S~~p~~ 573 (870)
..| ++.-+++. ..+|..+.+.|||||+|+.++..+.
T Consensus 178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 112 12111111 2678889999999999999965443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.00072 Score=70.77 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCCEEEEECCCCchhHHHHhc---C--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEe-
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE---R--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHC- 537 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~---r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~S- 537 (870)
..++.+|||+.||.|.=+..|+. . .++++|+++.-+.... ......|+.++..... ...++.....||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEc
Confidence 45789999999999974444432 2 6999999998776654 3444556666555543 4556666788999986
Q ss_pred cccc----cc------cccCh----------HHHHHHHHhhcCCCcEEEEEECCCc
Q 002884 538 ARCR----VP------WHIDG----------GKLLLELNRVLRPGGYFVWSATPVY 573 (870)
Q Consensus 538 s~~a----lh------w~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~p~~ 573 (870)
..|+ +. |.... ..+|..+.+.|||||+++.++..+.
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 2221 11 11111 2578889999999999999965443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00012 Score=75.17 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHH----HhhCccceecc-ccccccCCC-Cccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPII----YERGLFGIYHD-WCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i----~eRGlig~~h~-wce~f~tyP-rtyDllHa~~l 792 (870)
.|||+|||.|+++++|+.. .|+..-+.| ..+..+ -..|+...+.. .......++ ..||.+..
T Consensus 106 ~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~----~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~--- 178 (266)
T d1o54a_ 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE----EFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL--- 178 (266)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH----HHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE---
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe---
Confidence 4999999999999988643 243332222 333333 33455443331 111112233 66776533
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCceE
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~~ 842 (870)
+-.+...+|-++.|+|||||.+++--+ .+-+.++...++...|..
T Consensus 179 -----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~ 224 (266)
T d1o54a_ 179 -----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 224 (266)
T ss_dssp -----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred -----cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCcee
Confidence 235667899999999999999987654 444566666666667753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.91 E-value=0.0014 Score=70.78 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=73.0
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc-----------------CCEEEEeCChhhHHHHHHHHHHHcCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE-----------------RDVLTMSFAPKDEHDAQIQFALERGI 513 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~-----------------r~VtgVDiSp~ml~~A~vq~A~ergl 513 (870)
..+++..++. ...+.+|||-.||+|.|...+.+ ..+.|+|+++.+...|...... +|+
T Consensus 150 Iv~~mv~ll~----~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~ 224 (425)
T d2okca1 150 LIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGI 224 (425)
T ss_dssp HHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred hhHhhheecc----CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCC
Confidence 3455554432 34578999999999998765543 2599999999988777765544 333
Q ss_pred Cc---EEEEcCcccCCCCCCceeEEEeccccccccc------------------C-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 514 PA---ISAVMGTKRLQFPRNVFDLVHCARCRVPWHI------------------D-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 514 ~~---~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~------------------D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.. .....+. -...+...||+|+++. +|.. + ...++..+.+.|+|||.+++..+
T Consensus 225 ~~~~~~i~~~d~-l~~~~~~~fD~Ii~NP---Pfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 225 GTDRSPIVCEDS-LEKEPSTLVDVILANP---PFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSSCCSEEECCT-TTSCCSSCEEEEEECC---CSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeecCch-hhhhcccccceEEecC---CCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 21 1222222 2234567899999974 2311 0 13588899999999999888744
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00013 Score=75.45 Aligned_cols=130 Identities=14% Similarity=0.258 Sum_probs=82.4
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH---H-hhCc--cceec-cccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII---Y-ERGL--FGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i---~-eRGl--ig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
.|||+|||+|..|.+|+.. +- ..|+-+|-. ..|.++ . .-|+ +.+++ ||.+++.. ..||||-|+-=+=
T Consensus 111 ~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPYi 186 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPYI 186 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCCB
T ss_pred ceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchhh
Confidence 3999999999999988653 22 144555543 333332 2 2233 55566 67665422 6899976642210
Q ss_pred ------------cccC---Cc-------ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCce-EEE-eecCCC
Q 002884 795 ------------QLKN---RC-------KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWE-ILF-AFSKDQ 850 (870)
Q Consensus 795 ------------~~~~---rc-------~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~-~~~-~~~~~~ 850 (870)
.+.. .. .+..++.+.-+.|+|||++++-=..+-...+..++....|. +.+ .|-.+.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~g~ 266 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDN 266 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSS
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 0000 00 12358889999999999999964444467888999888886 332 355678
Q ss_pred ceEEEEE
Q 002884 851 EGVLSAQ 857 (870)
Q Consensus 851 e~iL~~~ 857 (870)
.++++++
T Consensus 267 ~R~v~~r 273 (274)
T d2b3ta1 267 ERVTLGR 273 (274)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 8998885
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.77 E-value=0.0012 Score=67.34 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
++++.++.....+.+ ..+..+|+|||||.|.++.+++.. .|.|+++--. ++..-. .....+.....+..
T Consensus 49 SR~~~Kl~~~~~~~~-----~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d-~~e~P~-~~~~~~~ni~~~~~ 121 (257)
T d2p41a1 49 SRGSAKLRWFVERNL-----VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPI-PMSTYGWNLVRLQS 121 (257)
T ss_dssp STHHHHHHHHHHTTS-----SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCC-CCCSTTGGGEEEEC
T ss_pred chHHHHHHHHHHhcC-----ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc-cccCCc-cccccccccccchh
Confidence 455555554443321 245679999999999999999865 5677776321 100000 00011112222322
Q ss_pred CcccCCCCCCceeEEEecccccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GTKRLQFPRNVFDLVHCARCRVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 dae~LPfpd~SFDlV~Ss~~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
...-.-.+....|+|+|-.+ -. ..+. -.+|.-+.+.|+|||-|++-.
T Consensus 122 ~~dv~~l~~~~~D~vlcDm~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 122 GVDVFFIPPERCDTLLCDIG-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp SCCTTTSCCCCCSEEEECCC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhhHHhcCCCcCCEEEeeCC-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 22222345678999999632 11 2221 256666778999999999864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.0037 Score=60.47 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=68.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-c----cC-CCCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-K----RL-QFPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e----~L-Pfpd~SFDlV~ 536 (870)
..++..++|..||.|..+..|++. +|+|+|..+.++..+. ....+...++.+. . .+ .+..+.+|.|+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~-----~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl 90 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK-----GLHLPGLTVVQGNFRHLKRHLAALGVERVDGIL 90 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHh-----hccccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence 357899999999999999888876 8999999998765544 3333444444432 1 11 13456799998
Q ss_pred ecccccccc-cC-------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWH-ID-------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~-~D-------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.-...-.+. .+ ....|.....+|+|||.+++..
T Consensus 91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 753321111 11 1357888899999999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.001 Score=70.15 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=63.6
Q ss_pred ccccccccccccccccchhHHhhhcCC----C-eEEEEeccCCCC-CChhHHHhh-----------------Cccceec-
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKDL----Q-VWVMNVVNVNSP-DTLPIIYER-----------------GLFGIYH- 771 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~~----~-vwvmNvvp~~~~-~tl~~i~eR-----------------Glig~~h- 771 (870)
++.-+.. |||+|||.|+++.+|+.. + |+.. +-. ..+.++.++ +-+-++|
T Consensus 95 ~i~pG~r--VLE~GtGsG~lt~~LAr~vg~~G~V~t~-----E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 95 DINPGDT--VLEAGSGSGGMSLFLSKAVGSQGRVISF-----EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp TCCTTCE--EEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred CCCCCCE--EEEecccccHHHHHHHHHhCCCcEEEEe-----cCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 3444443 999999999999998753 2 4333 322 333333221 1234455
Q ss_pred cccccccCCC-CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHH--cCCceEE
Q 002884 772 DWCESFSTYP-RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLK--SLHWEIL 843 (870)
Q Consensus 772 ~wce~f~tyP-rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~--~l~W~~~ 843 (870)
|.|.....++ ..||.|.. +--....+|-++-|+|||||.+++--+ ..-+.++-+.++ .+.|...
T Consensus 168 di~~~~~~~~~~~fD~V~L--------D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVAL--------DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp CTTCCC-------EEEEEE--------CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred chhhcccccCCCCcceEee--------cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 5666555555 68887643 111233589999999999999987543 333444444444 4568654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.30 E-value=0.00026 Score=70.30 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=70.5
Q ss_pred cccccccccccccchhHHhhhcCC---C--eEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC----C-Ccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL---Q--VWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY----P-RSY 784 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~---~--vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty----P-rty 784 (870)
-.+-++||++|+|+|..+.+|+.. + |+++=+-|.-.......+-.-|+ |-+++ +..+.+..+ + .+|
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 345789999999999888888653 2 44433322222233334455576 44555 344444333 2 679
Q ss_pred chhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEE
Q 002884 785 DLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 785 DllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~ 844 (870)
|+|+.+|-.+.+ .....|.+.-|+|||||.+|+.|- .+.+..|+. .=+|....
T Consensus 134 D~ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 134 DMVFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred ceeeeccccccc----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 999876543322 223467788899999998777652 334444443 44666543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.00068 Score=67.60 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=80.3
Q ss_pred ccccccccccccchhHHhhhcCC----C-eEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCccc
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL----Q-VWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRSYD 785 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~----~-vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----PrtyD 785 (870)
..-++||++|+|+|--|.+|+.- + |++.=..|.........+..-|+ |-+++ +-.+.+..+ +.+||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 45789999999999888877643 2 33322222111123344444554 33333 344444333 57899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------hhHHHHHHHHHcCCceEEEeecCC
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------SAVTEVENFLKSLHWEILFAFSKD 849 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------~~~~~~~~~~~~l~W~~~~~~~~~ 849 (870)
+|..++--+ ....++-.+-|.|||||.+|+.|-. .+.+..+.|.+.-+|...+.- -
T Consensus 138 ~ifiD~dk~------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP--i 209 (219)
T d2avda1 138 VAVVDADKE------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP--L 209 (219)
T ss_dssp EEEECSCST------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC--S
T ss_pred EEEEeCCHH------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee--c
Confidence 988765433 3345677778999999999997532 122334556677888876642 2
Q ss_pred CceEEEEEe
Q 002884 850 QEGVLSAQK 858 (870)
Q Consensus 850 ~e~iL~~~K 858 (870)
..++++|+|
T Consensus 210 gdGl~ia~K 218 (219)
T d2avda1 210 GDGLTLAFK 218 (219)
T ss_dssp TTCEEEEEE
T ss_pred CCeeEEEEe
Confidence 467999998
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.17 E-value=0.0007 Score=69.45 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=62.7
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCC-CChhHHHh---h---Cccceeccccccc--cCCC-Cccchhh
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSP-DTLPIIYE---R---GLFGIYHDWCESF--STYP-RSYDLLH 788 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~-~tl~~i~e---R---Glig~~h~wce~f--~tyP-rtyDllH 788 (870)
.|||+|||.|+++.+|+.. .|+.. |.. ..+..+.+ + +...-++..+..+ ..+| .+||.|.
T Consensus 99 ~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ 173 (264)
T d1i9ga_ 99 RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV 173 (264)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence 4999999999999999753 24443 333 44444433 1 2223233233322 2455 7999865
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHH-cCCce
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLK-SLHWE 841 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~-~l~W~ 841 (870)
. .. =+...+|-++-|+|||||.+++-.+ .+-+.++...++ .-.|.
T Consensus 174 l-----dl---p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 174 L-----DM---LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp E-----ES---SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred E-----ec---CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 4 11 2344689999999999999987654 333444444443 33474
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.00049 Score=72.11 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=72.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCccc--eec-c---ccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGLFG--IYH-D---WCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGlig--~~h-~---wce~f~tyPrtyDllHa~~ 791 (870)
+.|||++||+|||+.+|+... -.|+-+|.. ..|..+. .-||-. +++ | |.+.+....++||+|-++-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 569999999999999987432 355666655 4444433 345532 122 2 3333333447999987642
Q ss_pred c-cccccC-----CcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCCceEEEe
Q 002884 792 L-FSQLKN-----RCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 792 l-fS~~~~-----rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
= |+..+. ......++..+-++|||||.+++... ......|...+..-+.++++.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 221111 01233688899999999999999632 234556666666666666543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.00 E-value=0.0063 Score=60.98 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=54.8
Q ss_pred CCCEEEEECCCCchhHHHHh--------cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc---C-CCCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLF--------ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR---L-QFPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La--------~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~---L-Pfpd~SFD 533 (870)
++.+||+||++.|.-+..++ ...|+++|+.+.....+ . ...+.+.++.+ ... + -+....||
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~-~~~~~I~~i~gDs~~~~~~~~l~~~~~d 153 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----A-SDMENITLHQGDCSDLTTFEHLREMAHP 153 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----G-GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----h-ccccceeeeecccccHHHHHHHHhcCCC
Confidence 46799999999996544333 23899999987532111 1 11233444433 211 1 13355688
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+.- . -|........+ ++..+|+|||++++.+
T Consensus 154 lIfID-~-~H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 154 LIFID-N-AHANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEEE-S-SCSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEEEc-C-CcchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 88764 2 23322222223 4678999999999974
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.004 Score=69.11 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc----------------------CCEEEEeCChhhHHHHHHHHH
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE----------------------RDVLTMSFAPKDEHDAQIQFA 508 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~----------------------r~VtgVDiSp~ml~~A~vq~A 508 (870)
.+++|.+++ ...++.+|+|-.||+|.|.....+ ..++|+|+.+.+...|.....
T Consensus 152 Iv~~mv~ll----~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 152 LIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred hhHhhhhcc----cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 344555443 335678999999999998754432 158999999988777665443
Q ss_pred HHcCCCcE------EEEcCccc-CCCCCCceeEEEecccccccc---------------cCh-HHHHHHHHhhcCCCcEE
Q 002884 509 LERGIPAI------SAVMGTKR-LQFPRNVFDLVHCARCRVPWH---------------IDG-GKLLLELNRVLRPGGYF 565 (870)
Q Consensus 509 ~ergl~~~------~~v~dae~-LPfpd~SFDlV~Ss~~alhw~---------------~D~-~~vL~Ei~RVLKPGG~L 565 (870)
. ++.... ....+... -......||+|+++. +|. .+. -.++..+.+.|+|||++
T Consensus 228 l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NP---Pfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 228 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP---PFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECC---CCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred h-hcccccccccchhhhhhhhhhcccccccceeEEecC---CccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 3 333211 11111100 012345799999984 231 111 35888999999999999
Q ss_pred EEEEC
Q 002884 566 VWSAT 570 (870)
Q Consensus 566 v~S~~ 570 (870)
.+..+
T Consensus 304 aiIlP 308 (524)
T d2ar0a1 304 AVVVP 308 (524)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.00028 Score=70.51 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=49.1
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCcc----ceecccc-ccccCCC--Cccchhhhhc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLF----GIYHDWC-ESFSTYP--RSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGli----g~~h~wc-e~f~tyP--rtyDllHa~~ 791 (870)
.|||+|||+|-+++.|... .|+.+-..+.-.......+...|+. +..+..+ ..+..+| ..||.|++.+
T Consensus 79 ~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~ 158 (224)
T d1i1na_ 79 KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGA 158 (224)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhc
Confidence 5999999999888777653 2433322111111111122222321 1111111 2223343 6899999855
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
... .+..++-|.|+|||.+|+-
T Consensus 159 ~~~---------~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 159 AAP---------VVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp BBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred chh---------hcCHHHHhhcCCCcEEEEE
Confidence 443 3445677899999999983
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.014 Score=59.87 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++..||+||+|.|.++..|+++ +|+++++++.++......+.......... ...|.....++ .++.|+++ +
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~N---L 94 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN---L 94 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE---C
T ss_pred CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcc---h
Confidence 45789999999999999999874 99999999987766543332211112333 34444444443 35678876 5
Q ss_pred cccc
Q 002884 543 PWHI 546 (870)
Q Consensus 543 hw~~ 546 (870)
+|..
T Consensus 95 PY~I 98 (278)
T d1zq9a1 95 PYQI 98 (278)
T ss_dssp CGGG
T ss_pred HHHH
Confidence 7654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.89 E-value=0.00067 Score=68.54 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=64.3
Q ss_pred cccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhC----ccceeccccccccCCCCccchhhhh
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERG----LFGIYHDWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRG----lig~~h~wce~f~tyPrtyDllHa~ 790 (870)
|..++.|+|+|||.|.++++|++. .+.|+-+-++ |-+.+ +-.+-+|.. .+.| ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~~~~ri~~~~gd~~---~~~p-~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV--------IENAPPLSGIEHVGGDMF---ASVP-QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH--------HTTCCCCTTEEEEECCTT---TCCC-CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh--------hhccCCCCCeEEecCCcc---cccc-cceEEEEe
Confidence 678899999999999999999854 4566654332 22222 233345654 4456 45998877
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+++-.+.. -....||-.+-+.|+|||.++|-|
T Consensus 147 ~vLh~~~d-e~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 77776643 122368999999999999999986
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.042 Score=56.35 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=65.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCC---CCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFP---RNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfp---d~SFDlV 535 (870)
..++.+|||+.||.|.=+.+|+. ..|+++|+++.-+.... +.+...|+.++..... ...++.. .+.||.|
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V 170 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 170 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence 35688999999999986665553 26999999998766654 4556678776655543 3333322 2569999
Q ss_pred Eec-ccc----c------ccc--cC---h-------HHHHHHHHhhcCCCcEEEEEECCC
Q 002884 536 HCA-RCR----V------PWH--ID---G-------GKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 536 ~Ss-~~a----l------hw~--~D---~-------~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
++- .|+ + .|. .. . ..+|..+. .|+|||.|+.++..+
T Consensus 171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 862 111 1 111 01 0 12344444 479999999986443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.72 E-value=0.018 Score=61.35 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchhHHHHh-cC---CEEEEeCChhhHHHHHHHHHHHcCCCc---------------EEEE-cCcccCC
Q 002884 467 YTRVSLDVGCGVASFGGYLF-ER---DVLTMSFAPKDEHDAQIQFALERGIPA---------------ISAV-MGTKRLQ 526 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La-~r---~VtgVDiSp~ml~~A~vq~A~ergl~~---------------~~~v-~dae~LP 526 (870)
++.+|||..||+|.++...+ +. .|++.|+++..+..++.+... .++.. .... .++..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~l-N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHh-cCccccccccccccccccceeEeehhhhhhhh
Confidence 46799999999999887543 32 799999999988777644433 33321 1111 1221111
Q ss_pred -CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 527 -FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 527 -fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
-....||+|..-. | -.+..+|..+.|.++.||+|.++.+.
T Consensus 124 ~~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1245699998753 2 23578999999999999999999765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.57 E-value=0.0027 Score=63.55 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=60.4
Q ss_pred cccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+..++.|+|+|||.|.++.+|++. .+.|.-+-++-...... -.+-.+-||+.+.++.. ..|-|-|.-|.++
T Consensus 79 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~----~r~~~~~~d~~~~~P~a-d~~~l~~vlh~~~ 153 (243)
T d1kyza2 79 FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY----PGVEHVGGDMFVSIPKA-DAVFMKWICHDWS 153 (243)
T ss_dssp TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC----TTEEEEECCTTTCCCCC-SCEECSSSSTTSC
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC----CceEEecccccccCCCc-ceEEEEEEeecCC
Confidence 356899999999999999999865 45666654443221111 12556667776553321 2232223222222
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. . ....||-.+-+.|+|||.++|-|.
T Consensus 154 d--~--~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 154 D--E--HCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp H--H--HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred H--H--HHHHHHHHHHHhcCCCceEEEEEE
Confidence 1 1 233689999999999999999753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=95.52 E-value=0.00086 Score=67.13 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=50.3
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh--C--ccceeccccccccCCC--Cccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER--G--LFGIYHDWCESFSTYP--RSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR--G--lig~~h~wce~f~tyP--rtyDllHa~~lfS~~ 796 (870)
.|||+|||+|-++|.|....-- |+.++.. ..+..+.++ + -+-+.| ...+..|| ..||.|++.+...
T Consensus 73 ~VLdIG~GsGy~ta~La~l~~~---V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~~-- 145 (224)
T d1vbfa_ 73 KVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATAP-- 145 (224)
T ss_dssp EEEEECCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBBS--
T ss_pred eEEEecCCCCHHHHHHHHHhcc---cccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcchh--
Confidence 5999999999999988776432 3334433 233333222 1 122222 22334455 5699999855432
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+.-++-+.|+|||.+|+-
T Consensus 146 -------~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 146 -------TLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp -------SCCHHHHHTEEEEEEEEEE
T ss_pred -------hhhHHHHHhcCCCCEEEEE
Confidence 2333445679999999873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0016 Score=70.65 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=52.8
Q ss_pred ccccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhh-----------Cc-cceec-ccccccc
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYER-----------GL-FGIYH-DWCESFS 778 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eR-----------Gl-ig~~h-~wce~f~ 778 (870)
.+.-+.+ |||+|||.|.++..|+.. .|+-.-++| ..+.++.++ |+ .|... .+...|.
T Consensus 213 ~Lkpgd~--fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~----~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 213 QLKKGDT--FMDLGSGVGNCVVQAALECGCALSFGCEIMD----DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp TCCTTCE--EEEESCTTSHHHHHHHHHHCCSEEEEEECCH----HHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred CCCCCCE--EEeCCCCCcHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 3444444 999999999988777543 355444443 333333322 11 11111 1222221
Q ss_pred CCC-Cccchhhhhccccc-ccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 779 TYP-RSYDLLHADHLFSQ-LKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 779 tyP-rtyDllHa~~lfS~-~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.-+ --.++-.|+-+|.. +..--.+...|.||-|+|||||.+|..+.
T Consensus 287 ~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred hccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 111 11111223333321 11112456789999999999999998763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.0037 Score=64.17 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=80.0
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---h-hCc---cceec-cccccccCCCCccchhhhh--
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---E-RGL---FGIYH-DWCESFSTYPRSYDLLHAD-- 790 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---e-RGl---ig~~h-~wce~f~tyPrtyDllHa~-- 790 (870)
...|+|+|||.|..+.+|+..+=+ .|+-+|-. ..+.++. + -|+ +.+++ +|.+.+......||||-|+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 456899999999988888755421 23444543 3333332 2 244 44555 5766655555688996443
Q ss_pred -----ccccc---cc-------CCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceEEE
Q 002884 791 -----HLFSQ---LK-------NRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLS 855 (870)
Q Consensus 791 -----~lfS~---~~-------~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~ 855 (870)
..... +. ..-.+..+-.=+-++|+|||++++-=..+--+.|+.++....| ..|-.+.+++++
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~---~kDl~g~~R~~~ 265 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF---LKDSAGKYRFLL 265 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEE---EECTTSSEEEEE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCE---EeccCCCcEEEE
Confidence 11110 00 0011221111135889999999997555556778888887766 346667899999
Q ss_pred EEeC
Q 002884 856 AQKG 859 (870)
Q Consensus 856 ~~K~ 859 (870)
++|+
T Consensus 266 ~~k~ 269 (271)
T d1nv8a_ 266 LNRR 269 (271)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9985
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.32 E-value=0.00055 Score=63.93 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc---cceeccccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
.+|||++||+|+||-..+.++. -+|.-++.. ..+..+.+ -|+ +-+++.-|..+... ...||+|.++-=|
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 4699999999999976666665 245555654 33333222 243 44555434444333 4789999875433
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
........+ +.|.+ .++|+|||.+|+..
T Consensus 94 ~~~~~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AKETIVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp HHHHHHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred ccchHHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 321111112 22233 48999999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.22 E-value=0.0033 Score=63.91 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH---Hh-hCccceeccccccccCCC--Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII---YE-RGLFGIYHDWCESFSTYP--RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i---~e-RGlig~~h~wce~f~tyP--rtyDllHa~~lfS~ 795 (870)
..||||+||+|+|+-.++..+- -.|+.+|.. ..+..+ .. -||-+.++..+.....++ ..||.|..+-..
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~-- 184 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV-- 184 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS--
T ss_pred cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC--
Confidence 4599999999999988776652 134444433 333332 22 255443333333333343 578877653221
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecC-------hhhHHHHHHHHHcCCceEEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDE-------PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~-------~~~~~~~~~~~~~l~W~~~~ 844 (870)
.-...|-+.-++|+|||++.+-+. .+..+.++.+++...+++..
T Consensus 185 -----~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 185 -----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence 223467778899999999876531 23457788888888888754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.99 E-value=0.003 Score=66.01 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=58.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCccceecccccc-------ccCCCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLFGIYHDWCES-------FSTYPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGlig~~h~wce~-------f~tyPrtyDllHa~ 790 (870)
.+|||++||+|+|+.+++..+.- .|+-+|.. ..+..+ ..-||-..++-.+.. +..-.++||+|=++
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 46999999999999988877641 23344433 333332 233554433322221 12223689997654
Q ss_pred ccc-ccccC-----CcChhhHHHhhhhcccCCcEEEEec
Q 002884 791 HLF-SQLKN-----RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 791 ~lf-S~~~~-----rc~~~~vl~EmDRILRPgG~~iird 823 (870)
--. +..+. ......++...-|+|||||.+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 332 11111 1124468888999999999999974
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=94.95 E-value=0.0048 Score=64.50 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCC-CChhHHHh-hCccc----eec-c---ccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSP-DTLPIIYE-RGLFG----IYH-D---WCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~-~tl~~i~e-RGlig----~~h-~---wce~f~tyPrtyDllHa~~ 791 (870)
+.|||+.||+|||+-+++..+- .|.+|=..... ......++ .||-. ++. | |...+..-.+.||+|=+|=
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP 225 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 225 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence 5699999999999987766554 44444211111 22223333 34421 222 2 2222222346899976541
Q ss_pred -ccccccCC-c----ChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCCceEEE
Q 002884 792 -LFSQLKNR-C----KLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 -lfS~~~~r-c----~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~W~~~~ 844 (870)
-|+..+.. = ....++...=++|+|||++|+.-. .+....|...+..-.+.+..
T Consensus 226 P~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 226 PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 12211110 0 133577788899999999999732 23345555655555555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.91 E-value=0.031 Score=51.72 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCCCCEEEEECCCC-chhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc--------CC-CCCCc
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR--------LQ-FPRNV 531 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~--------LP-fpd~S 531 (870)
.+++.+||-+|||. |.++..+++ .+|+++|.++. +.+++++.|............ +. .....
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHH-----HHHHHHHcCCcEEEeccccccccchhhhhhhcccccC
Confidence 35688999999984 566655554 38999999887 445666767544332221100 00 11245
Q ss_pred eeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 532 FDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|+|+-.- .....+..+.++|||||.+++.+.
T Consensus 99 ~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 99 PNVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 89998531 235778899999999999998743
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.019 Score=58.03 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDA 503 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A 503 (870)
.++..||+||||.|.++..|+++ +|+++|+++.++...
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L 59 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARL 59 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHH
Confidence 45789999999999999999986 999999999865443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.74 E-value=0.012 Score=57.24 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=69.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC-ccc-eeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG-LFG-IYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG-lig-~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..|||+|||+|+++.+++.++. ..|+-+|.. ..+..+.+.- ..+ -....|.....++..||+|=++-=|......
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~ 125 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKH 125 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTT
T ss_pred CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccccc
Confidence 3599999999999987777764 244445544 4555544321 111 1223455556678889998777666544444
Q ss_pred cChhhHHHhhhhcccCCcEEEE--ecChhhHHHHHHHHHcCCceEEE
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIV--RDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~ii--rd~~~~~~~~~~~~~~l~W~~~~ 844 (870)
+.+..+. +.+.+++.++. .........++.+.+...|.+..
T Consensus 126 ~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 126 ADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 4544332 33444554433 34455567788888888887754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.68 E-value=0.015 Score=61.88 Aligned_cols=99 Identities=17% Similarity=0.327 Sum_probs=61.5
Q ss_pred CEEEEECCCCchhHHHHhc--------------------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc---Cc-cc
Q 002884 469 RVSLDVGCGVASFGGYLFE--------------------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM---GT-KR 524 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~--------------------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---da-e~ 524 (870)
-+|.|+||.+|..+..+.. -.|.--|+-.++..................++. +. ..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 5699999999965532211 056777887777655442222212211122332 32 22
Q ss_pred CCCCCCceeEEEecccccccccC---------------------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 525 LQFPRNVFDLVHCARCRVPWHID---------------------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 525 LPfpd~SFDlV~Ss~~alhw~~D---------------------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--||+++.+++||+. ++||... ...+|+-=.+-|+|||.++++
T Consensus 133 rLfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hcCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 338999999999985 5999531 113566667789999999997
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.42 E-value=0.002 Score=63.93 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred ccccccccchhHHhhhcCC-C--eEEEEeccCCCCCChhHHHhhCccceeccccccccCCC--CccchhhhhcccccccC
Q 002884 724 NVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP--RSYDLLHADHLFSQLKN 798 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP--rtyDllHa~~lfS~~~~ 798 (870)
+|||+|||+|-++|.|... + |..+-+.+.-.......+.+.|+-.+.--.+..+..+| ..||.|++.+-...
T Consensus 81 ~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~--- 157 (215)
T d1jg1a_ 81 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPK--- 157 (215)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSS---
T ss_pred eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccccc---
Confidence 6999999999999888754 2 54433322111122223444565544444445555565 78999998443332
Q ss_pred CcChhhHHHhhhhcccCCcEEEEe
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+..-|+ .-|+|||.+|+-
T Consensus 158 ---ip~~l~---~qL~~gGrLv~p 175 (215)
T d1jg1a_ 158 ---IPEPLI---EQLKIGGKLIIP 175 (215)
T ss_dssp ---CCHHHH---HTEEEEEEEEEE
T ss_pred ---CCHHHH---HhcCCCCEEEEE
Confidence 223344 359999999863
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.0084 Score=56.07 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCCCCEEEEECCC-CchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCG-VASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCG-tG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.+++.+||-+||| .|.++..+++ .+|+++|.++..+ +.+++.|....+..... ....-..+.||+|+...
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-----~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-----EDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-----HHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-----HHhhccCCcEEeeccchHHHHHhhhcccceEEEEe
Confidence 3568899999998 4666666654 3899999998743 45666675433221111 11111235699988632
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
...+ ...+....++|+|||.+++.+
T Consensus 100 ~~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 100 SSLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp SCST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred cCCc-----cchHHHHHHHhhccceEEEec
Confidence 2111 112456789999999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.0029 Score=61.05 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=72.3
Q ss_pred ccccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCC-CCccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTY-PRSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~ty-PrtyDllHa~~lfS~ 795 (870)
-.+|+|+||+-|||.-++.+. .|+..-+.|...-+.. .+-.|-++.....-.....+ ...+|||-||+-+..
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~--~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~ 100 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV--DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM 100 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE--EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc--eEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence 467999999999999987753 2444444444322111 11122222212111111122 256999999888764
Q ss_pred ccCC--------cChhhHHHhhhhcccCCcEEEEe--cChhhHHHHHHHHHcCCceEEEe-----ecCCCceEEEEEe
Q 002884 796 LKNR--------CKLVPVMAEVDRIVRPGGKLIVR--DEPSAVTEVENFLKSLHWEILFA-----FSKDQEGVLSAQK 858 (870)
Q Consensus 796 ~~~r--------c~~~~vl~EmDRILRPgG~~iir--d~~~~~~~~~~~~~~l~W~~~~~-----~~~~~e~iL~~~K 858 (870)
...+ ......|.=+.++|||||.||+- +..+. ..+...++.+=-++.+. -....|..|||+.
T Consensus 101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~-~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF-DEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH-HHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccH-HHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 3221 11123444467899999999976 33222 23334444333333333 1235799999975
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.0029 Score=66.16 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.0
Q ss_pred ChhhHHHhhhhcccCCcEEEEec
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird 823 (870)
++...|.||-|+|||||.+|...
T Consensus 244 ~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 244 EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHHhCCCCcEEEEec
Confidence 45678999999999999999864
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.89 E-value=0.0076 Score=58.98 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
+.|||+|||+|.+|-++...+.- +|+-+|.. ..+..+.+. ..-+.-.|..+..+|..||+|=++=-|-......+
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N--~~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~D 125 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRN--CGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 125 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHH--CTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHc--cccccEEEEehhhcCCcceEEEeCcccchhhhhch
Confidence 57999999999998777666542 34555544 566555443 22223344445667889999877655533222233
Q ss_pred hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHc
Q 002884 802 LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKS 837 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~ 837 (870)
+. + ++..+.+++.++..-.......+...+..
T Consensus 126 ~~--f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 126 RA--F--IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp HH--H--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HH--H--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 22 2 34456666665544344455555555544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.64 E-value=0.043 Score=51.72 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----C-CCCCcee
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----Q-FPRNVFD 533 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----P-fpd~SFD 533 (870)
.+++.+||=+|||. |.++..+++. .|+++|.++. +.+.+++.|.... +......+ . .....||
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~lGa~~~-i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKFYGATDI-LNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHHHTCSEE-ECGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh-----hHHHHHhhCcccc-ccccchhHHHHHHHHhhccCcc
Confidence 35688999999986 6777766663 7999999886 4456666675322 11111111 0 1234599
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|+-.-. ....+....++|||+|.+++...
T Consensus 99 ~vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 99 RVIMAGG-------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred eEEEccC-------CHHHHHHHHHHHhcCCEEEEEee
Confidence 9986421 23567888999999999998743
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.62 E-value=0.092 Score=50.38 Aligned_cols=98 Identities=16% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCCCCEEEEECCCC-chhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC-----C-CCCCce
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL-----Q-FPRNVF 532 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L-----P-fpd~SF 532 (870)
.+++.+||.+|||. |.++..+++ ..|+++|.++. +.++|++.|... .+... ..+ - .....+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~-----rl~~a~~~Ga~~--~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHAKAQGFEI--ADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCEE--EETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch-----hhHhhhhccccE--EEeCCCcCHHHHHHHHhCCCCc
Confidence 35789999999997 555555554 27999999987 445677777532 22211 111 0 123458
Q ss_pred eEEEeccc-----cccc---ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 533 DLVHCARC-----RVPW---HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 533 DlV~Ss~~-----alhw---~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+++-.-. ..++ .......|..+.+++||||.+++.+
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 99985311 0111 1223679999999999999999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.074 Score=49.31 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=61.6
Q ss_pred CCCCCEEEEECCCCc-hhHHHHhc---C-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc------CC-CCCCce
Q 002884 465 GKYTRVSLDVGCGVA-SFGGYLFE---R-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR------LQ-FPRNVF 532 (870)
Q Consensus 465 g~~~~~VLDIGCGtG-~~a~~La~---r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~------LP-fpd~SF 532 (870)
.+++.+||=+|||.. .++..+++ . +|+++|.++. +.+++++.|............ +. .....|
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~-----rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH-----HHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence 356889999999864 44444443 2 7999999887 445677777654332221100 00 012458
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+..- .....+..+.++|||||.+++.+.+
T Consensus 99 Dvvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECT-------GAEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEecc-------CCchhHHHHHHHhcCCCEEEEEecC
Confidence 9998742 2356889999999999999987543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.94 E-value=0.015 Score=58.36 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=63.7
Q ss_pred cccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcc
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
..|..++.|+|+|+|.|.++.+|.+. .+.|...-++-..... ...+--+-||..+. -| .+|++...++
T Consensus 76 ~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~----~~rv~~~~gD~f~~---~p-~aD~~~l~~v 147 (244)
T d1fp2a2 76 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG----SNNLTYVGGDMFTS---IP-NADAVLLKYI 147 (244)
T ss_dssp HHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC----BTTEEEEECCTTTC---CC-CCSEEEEESC
T ss_pred ccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcc----cCceEEEecCcccC---CC-CCcEEEEEee
Confidence 35677899999999999999999765 4567665332111000 01133344465433 34 6799888888
Q ss_pred cccccCCcChhhHHHhhhhcccCC---cEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPG---GKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPg---G~~iird 823 (870)
|-.+.+. ....||--+-+.|+|| |.++|-|
T Consensus 148 LHdw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 148 LHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cccCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 7766531 2235888999999999 6677764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=92.68 E-value=0.034 Score=57.74 Aligned_cols=140 Identities=13% Similarity=0.060 Sum_probs=79.9
Q ss_pred ccccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHH-----------hhCccceec-cccccccCCCCccch
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIY-----------ERGLFGIYH-DWCESFSTYPRSYDL 786 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~-----------eRGlig~~h-~wce~f~tyPrtyDl 786 (870)
...++||.+|+|-|+.++.|... ++--+-+|.++. .-+.+.. +---+-+++ |+-+-+...++.||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH-HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 35789999999999999988766 452223344432 2222221 111234444 444444456789999
Q ss_pred hhhhcc--cccccCCcCh--hhHHHhhhhcccCCcEEEEec------ChhhHHHHHHHHHcCCceEEEeec-----CCCc
Q 002884 787 LHADHL--FSQLKNRCKL--VPVMAEVDRIVRPGGKLIVRD------EPSAVTEVENFLKSLHWEILFAFS-----KDQE 851 (870)
Q Consensus 787 lHa~~l--fS~~~~rc~~--~~vl~EmDRILRPgG~~iird------~~~~~~~~~~~~~~l~W~~~~~~~-----~~~e 851 (870)
|..+.. +.....-..+ ...+..+-|+|+|||.+++.- ...+...+.+.+++.=..+..... ...-
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w 234 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCC
Confidence 975431 1111111111 246778999999999999852 234556676666666555544211 1234
Q ss_pred eEEEEEeCC
Q 002884 852 GVLSAQKGN 860 (870)
Q Consensus 852 ~iL~~~K~~ 860 (870)
.+++|.|..
T Consensus 235 ~f~~aS~~~ 243 (312)
T d1uira_ 235 GFLLASDAF 243 (312)
T ss_dssp EEEEEESSS
T ss_pred EeEEEeCCC
Confidence 578888753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=0.088 Score=49.29 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc--------CC-CCCCc
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR--------LQ-FPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~--------LP-fpd~S 531 (870)
+++.+||-+|||. |.++..+++. .|+++|.++. +.+.+++.|....+ ...... .. .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN-----RLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccc-----cccccccccceEEE-eccccchHHHHHHHHHhhCCCC
Confidence 4688999999984 5566555543 6899999887 33566666653322 111111 00 12345
Q ss_pred eeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||+|+-.-. ....+..+.++|+|||.+++.+
T Consensus 101 ~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 101 ADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 999986421 1356788899999999998764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.37 E-value=0.0069 Score=60.18 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=48.8
Q ss_pred cccccccccchhHHhhhcCC----Ce----EEEEeccCCCC-CChhHHHhh---------Cc--cceeccccccccCCC-
Q 002884 723 RNVMDMRAVYGGFAAALKDL----QV----WVMNVVNVNSP-DTLPIIYER---------GL--FGIYHDWCESFSTYP- 781 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~----~v----wvmNvvp~~~~-~tl~~i~eR---------Gl--ig~~h~wce~f~tyP- 781 (870)
-.|||+|||+|-++|.|... ++ =|. -++.. ..+..+.++ |+ +-+++. .....+|
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~---~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~--d~~~~~~~ 156 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIV---GIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG--DGRKGYPP 156 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEE---EEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES--CGGGCCGG
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccCCcccEEE---EEecCHHHHHHHHHhhhhcchhhcCccEEEEEec--cccccccc
Confidence 35999999999999888654 21 122 22322 222222211 22 223332 2233343
Q ss_pred -CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 782 -RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 782 -rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..||.|++.+... .+-..+-+.|+|||.+|+-
T Consensus 157 ~~~fD~Iiv~~a~~---------~~p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 157 NAPYNAIHVGAAAP---------DTPTELINQLASGGRLIVP 189 (223)
T ss_dssp GCSEEEEEECSCBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred ccceeeEEEEeech---------hchHHHHHhcCCCcEEEEE
Confidence 6899999854433 2333455789999999873
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.29 E-value=0.096 Score=48.89 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=59.8
Q ss_pred CCCCCEEEEECCCCc-hhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----CCCCCceeE
Q 002884 465 GKYTRVSLDVGCGVA-SFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----QFPRNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG-~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----Pfpd~SFDl 534 (870)
.+++.+||=+|||.- .++..+++ ..|+++|.++. +.+++++.|....+ ......+ -+.++.||+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~-----k~~~a~~~Ga~~~i-~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES-----RLELAKQLGATHVI-NSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH-----HHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH-----HHHHHHHcCCeEEE-eCCCcCHHHHHHHHcCCCCcE
Confidence 457889999999853 34444443 26778888886 44566677754332 2221111 123457999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+-.- .....+..+.++|+|+|.+++.+.
T Consensus 100 vid~~-------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALEST-------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECS-------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcC-------CcHHHHHHHHhcccCceEEEEEee
Confidence 98531 235788899999999999998643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.24 E-value=0.12 Score=48.71 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=63.5
Q ss_pred CCCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC------CCCCCcee
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL------QFPRNVFD 533 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L------Pfpd~SFD 533 (870)
.+++.+||=+|||. |.++..+++. .|+++|.++. +.+++++.|....+........ -.....+|
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 35788999999997 6666666653 6889999987 4466777776443221111100 01235689
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCC-cEEEEEECC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPG-GYFVWSATP 571 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPG-G~Lv~S~~p 571 (870)
+|+-.- .....+.+..+.|+|| |.+++...+
T Consensus 101 ~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 101 YSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEEESS-------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEEec-------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence 998631 2457899999999996 999987544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.095 Score=48.69 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCCCCEEEEECC--CCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC------CCCCCcee
Q 002884 465 GKYTRVSLDVGC--GVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL------QFPRNVFD 533 (870)
Q Consensus 465 g~~~~~VLDIGC--GtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L------Pfpd~SFD 533 (870)
.+++.+||-+|+ |.|..+..+++ .+|++++.++. ..+++++.|...++- .....+ ......||
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-----~~~~~~~~Ga~~vi~-~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-----GQKIVLQNGAHEVFN-HREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTTCSEEEE-TTSTTHHHHHHHHHCTTCEE
T ss_pred CCCCCEEEEEeccccccccccccccccCccccccccccc-----ccccccccCcccccc-cccccHHHHhhhhhccCCce
Confidence 357889999997 34566666655 38888887765 345666777654322 111111 12346699
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+... ....+....++|+|||.++..+
T Consensus 100 ~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 100 IIIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred EEeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 999752 2357888899999999999863
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=91.35 E-value=0.011 Score=55.98 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=54.1
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCccc-eeccccccccCC---C-Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLFG-IYHDWCESFSTY---P-RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGlig-~~h~wce~f~ty---P-rtyDllHa~~lf 793 (870)
.|||++||+|++|.+...++.=| +-+|.. ..+..+ ..-|+-. ++..-+..|..+ + ..||+|-+|==|
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga~v---v~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred eEEEeccccchhhhhhhhccchh---hhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc
Confidence 59999999999999888888633 334543 333322 2234432 333344443322 2 579998554222
Q ss_pred ccccCCcChhhHHHhh--hhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEV--DRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~Em--DRILRPgG~~iird~ 824 (870)
.. ++..++.++ -.+|+|||.+|+.-+
T Consensus 121 ~~-----~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 121 AM-----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TS-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cc-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 11 223334433 258999999999643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.99 E-value=0.09 Score=52.03 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=73.3
Q ss_pred cccccccccccccccchhHHhhhc----CCC-eEEEEeccCCCCCChhHHHhhCc---cceecc-ccccccC------CC
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALK----DLQ-VWVMNVVNVNSPDTLPIIYERGL---FGIYHD-WCESFST------YP 781 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~----~~~-vwvmNvvp~~~~~tl~~i~eRGl---ig~~h~-wce~f~t------yP 781 (870)
+.....++||.+|+++|--|.+|+ +.+ |+++=..|....-....+..-|+ |-+++. -.+.+.. .+
T Consensus 55 ~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 55 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp HHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred HHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccC
Confidence 334568999999999996666554 332 33332222211223344555576 333332 3333332 25
Q ss_pred CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh--------------hh----HHHHHH----HHHcCC
Q 002884 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP--------------SA----VTEVEN----FLKSLH 839 (870)
Q Consensus 782 rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~--------------~~----~~~~~~----~~~~l~ 839 (870)
.+||+|=.|+ . + -....++--+-++|||||.+|+.+-. .. ...+++ +...=+
T Consensus 135 ~~fD~iFiDa----~-k-~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r 208 (227)
T d1susa1 135 GSYDFIFVDA----D-K-DNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPR 208 (227)
T ss_dssp TCBSEEEECS----C-S-TTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CceeEEEecc----c-h-hhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6899964432 1 1 22445666667899999999998531 11 122333 233345
Q ss_pred ceEEEeecCCCceEEEEEe
Q 002884 840 WEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 840 W~~~~~~~~~~e~iL~~~K 858 (870)
|++.+. .-.+++++|+|
T Consensus 209 ~~~~ll--PigDGl~i~~K 225 (227)
T d1susa1 209 IEICML--PVGDGITICRR 225 (227)
T ss_dssp BCCEEE--CSTTCEEEECB
T ss_pred EEEEEe--ecCCeeEEEEE
Confidence 666553 22467999988
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.79 E-value=0.11 Score=47.82 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=56.9
Q ss_pred CCCCCEEEEECCCC-chhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----CCCCCceeEE
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----QFPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----Pfpd~SFDlV 535 (870)
.+++.+||=+|||. |.++..+++ .+|+++|.++. +.+++++.|....+ ....... ....+.+|.|
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~-----~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA-----KLELARKLGASLTV-NARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh-----HHHhhhccCccccc-cccchhHHHHHHHhhcCCcccc
Confidence 35688999999985 445555554 38999999886 34566677754322 2111110 0112335555
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.. ....+....++|+|||.+++..
T Consensus 99 ~~~~--------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 99 VTAV--------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp ECCS--------CHHHHHHHHTTEEEEEEEEECC
T ss_pred cccc--------cchHHHHHHHHhcCCcEEEEEE
Confidence 5431 2467888999999999999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.02 Score=54.61 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=55.4
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC--CChhHHHhhCccceec----cccccccCCCCccchhhhhccccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP--DTLPIIYERGLFGIYH----DWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~--~tl~~i~eRGlig~~h----~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.|||+.||+|++|-..++++..-.-.|..+.. ..+.-..++.-+.-+. |...-+......||+|-+|-=|..
T Consensus 46 ~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~-- 123 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR-- 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST--
T ss_pred hhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc--
Confidence 49999999999998777887743333444433 4444455554232222 222222223478999888654432
Q ss_pred CCcChhhHHHhh--hhcccCCcEEEEe
Q 002884 798 NRCKLVPVMAEV--DRIVRPGGKLIVR 822 (870)
Q Consensus 798 ~rc~~~~vl~Em--DRILRPgG~~iir 822 (870)
.....+|-=+ -.+|+|+|++|+-
T Consensus 124 --~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 124 --GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp --TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred --chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2233232222 3589999999985
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.087 Score=48.75 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCCC-chhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.+++.+||=+|||. |.++..+++. +++++|.++.-+ +++++.|....+..............||+|+-.-.
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-----~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-----EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-----HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-----HHHhccCCcEEEECchhhHHHHhcCCCceeeeeee
Confidence 35788999999975 5666666553 778888877633 45666675433221111111122356999986421
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....+....++|+|||.+++..
T Consensus 103 -------~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 103 -------APHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp -------SCCCHHHHHTTEEEEEEEEECC
T ss_pred -------cchhHHHHHHHHhcCCEEEEec
Confidence 1234667789999999999874
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.29 E-value=0.068 Score=55.49 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh---h-Cccc----eec-ccccc---ccCCCCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE---R-GLFG----IYH-DWCES---FSTYPRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e---R-Glig----~~h-~wce~---f~tyPrtyDllHa 789 (870)
+.|||+.||+|+|+.+++..+- .|+-+|.. ..|..+.+ . |+-. +++ |...- +....+.||+|-+
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 5799999999999999998875 35556765 44444432 2 4533 233 22111 1122478999865
Q ss_pred hcc-cccccC------CcChhhHHHhhhhcccCCcEEEEe-c------ChhhHHHHHHHHHcCCceEE
Q 002884 790 DHL-FSQLKN------RCKLVPVMAEVDRIVRPGGKLIVR-D------EPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 790 ~~l-fS~~~~------rc~~~~vl~EmDRILRPgG~~iir-d------~~~~~~~~~~~~~~l~W~~~ 843 (870)
|== |+..++ +-.+..++..+-++|+|||.++|. - .....+.++..+......+.
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 421 222111 011233444567899999975554 1 22234555666666666664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.81 E-value=0.18 Score=46.00 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCCCCEEEEECCCCc-hhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccCC-CCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVA-SFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRLQ-FPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG-~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~LP-fpd~SFDlV~ 536 (870)
.+++.+||=+|||.- .++..+++ .+|++++.++. +.+++++.|........+. ..+. ...+.+|+|+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~-----r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE-----KLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH-----HhhhhhhcCcceecccccchhhhhcccccCCCceEEe
Confidence 356889999999874 44444443 38899998886 4456777776432211111 0011 1234455554
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+. . ....+....++|+|||.+++...
T Consensus 100 ~~---~-----~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 100 TA---V-----SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SS---C-----CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ec---C-----CHHHHHHHHHHhccCCceEeccc
Confidence 43 1 25778999999999999998743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=88.58 E-value=0.26 Score=49.11 Aligned_cols=138 Identities=17% Similarity=0.255 Sum_probs=84.1
Q ss_pred ccccccccccccccch--hHHhhhcCCCeEEEEeccCCCC--CChh-HHHhhCcc--ceeccccccccC---CCCccchh
Q 002884 718 NWSNVRNVMDMRAVYG--GFAAALKDLQVWVMNVVNVNSP--DTLP-IIYERGLF--GIYHDWCESFST---YPRSYDLL 787 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~G--gfaaaL~~~~vwvmNvvp~~~~--~tl~-~i~eRGli--g~~h~wce~f~t---yPrtyDll 787 (870)
......+|+|+|+|-| |.--|+..... =+.++..... ..|. ++.+=||- -++|.-.|.+.. +...||+|
T Consensus 67 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 67 DFNQVNTICDVGAGAGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred cccCCCeEEeecCCCchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEE
Confidence 3345678999998866 33333332222 2233443333 4444 34455874 456766676643 34689998
Q ss_pred hhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChh---hHHHHHHHHHcCCceEEEe--ec---CCCc-eEEEEEe
Q 002884 788 HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS---AVTEVENFLKSLHWEILFA--FS---KDQE-GVLSAQK 858 (870)
Q Consensus 788 Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~---~~~~~~~~~~~l~W~~~~~--~~---~~~e-~iL~~~K 858 (870)
-| .+-+.+..+|-=..++|+|||.+|+--... .+...+..+..+.+++... +. .+.+ .|++.+|
T Consensus 146 ~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K 218 (239)
T d1xdza_ 146 TA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRK 218 (239)
T ss_dssp EE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred EE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEE
Confidence 77 334677878878899999999999975443 3566666778888887533 11 2333 5778887
Q ss_pred CCCCC
Q 002884 859 GNWQP 863 (870)
Q Consensus 859 ~~w~~ 863 (870)
.-=.|
T Consensus 219 ~~~~p 223 (239)
T d1xdza_ 219 IKNTP 223 (239)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 54333
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.96 E-value=0.49 Score=43.59 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCc-hhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC----C-CCCCceeEE
Q 002884 466 KYTRVSLDVGCGVA-SFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL----Q-FPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG-~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L----P-fpd~SFDlV 535 (870)
+++.+||-+|||.. .++..+++ ..|+++|.++. +.+++++.|.... +....... - .....+|+|
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~-----k~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE-----KLKLAERLGADHV-VDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH-----HHHHHHHTTCSEE-EETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH-----HHHHHhhccccee-ecCcccHHHHHHHhhCCCCceEE
Confidence 46789999999864 44444443 27888899886 4456666665432 22211111 0 123459999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+-.. .....+....++|+|||.+++..
T Consensus 105 id~~-------g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 105 MDFV-------GSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EESS-------CCHHHHHHGGGGEEEEEEEEECC
T ss_pred EEec-------CcchHHHHHHHHHhCCCEEEEEe
Confidence 8642 23467889999999999999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.79 E-value=0.23 Score=45.58 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCCCEEEEECCC--CchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----C-CCCCce
Q 002884 465 GKYTRVSLDVGCG--VASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----Q-FPRNVF 532 (870)
Q Consensus 465 g~~~~~VLDIGCG--tG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----P-fpd~SF 532 (870)
.+++.+||=+||+ .|.++..++. ..|++++.++. +.+++++.|..... ....... . .....|
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-----~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-----AVEAAKRAGADYVI-NASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-----HHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchh-----hHHHHHHcCCceee-ccCCcCHHHHHHHHhhcccc
Confidence 3568899999974 3444444443 38899998876 44566666754322 2221111 0 123569
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+... .....+..+.++|+|||.+++...+
T Consensus 99 d~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 99 DAVIDLN-------NSEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEESC-------CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhhccc-------ccchHHHhhhhhcccCCEEEEeccc
Confidence 9998742 2356778889999999999987433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.61 E-value=0.048 Score=51.88 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.4
Q ss_pred cccccccccchhHHhhhcC
Q 002884 723 RNVMDMRAVYGGFAAALKD 741 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~ 741 (870)
.+|+|.+||.|+|..++.+
T Consensus 21 ~~IlDp~~G~G~fl~~~~~ 39 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFRE 39 (223)
T ss_dssp CEEEEETCTTCHHHHHHHH
T ss_pred CEEEECCCchHHHHHHHHH
Confidence 3699999999999888764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=86.49 E-value=0.3 Score=49.67 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=71.9
Q ss_pred ccccccccccchhHHhhhc----CCCeEEEEeccCCCC-CChhHHH----hhC-ccceec-cccccccCCC-Cccchhhh
Q 002884 722 VRNVMDMRAVYGGFAAALK----DLQVWVMNVVNVNSP-DTLPIIY----ERG-LFGIYH-DWCESFSTYP-RSYDLLHA 789 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~----~~~vwvmNvvp~~~~-~tl~~i~----eRG-lig~~h-~wce~f~tyP-rtyDllHa 789 (870)
--+|+|.+||.|+|..++. +....-.++.-++-. ..+.++. -.| -..++| ++. ...| ..||+|-+
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~---~~~~~~~fD~vi~ 194 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGL---ANLLVDPVDVVIS 194 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTT---SCCCCCCEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccc---ccccccccccccc
Confidence 3569999999999998774 333333345544433 2332221 112 122222 332 2223 67999877
Q ss_pred hcccccccC--------------CcChhh-HHHhhhhcccCCcEEEEecChhh-----HHHHHHHHHcCCceEEEe----
Q 002884 790 DHLFSQLKN--------------RCKLVP-VMAEVDRIVRPGGKLIVRDEPSA-----VTEVENFLKSLHWEILFA---- 845 (870)
Q Consensus 790 ~~lfS~~~~--------------rc~~~~-vl~EmDRILRPgG~~iird~~~~-----~~~~~~~~~~l~W~~~~~---- 845 (870)
+-=|+.... .-.+.. .+.-+-+.|+|||.+++=-+... -..+++.+-.-++-..+.
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp~ 274 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPE 274 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCG
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECCc
Confidence 766643210 011222 35557899999997655433222 356777655555444333
Q ss_pred --ec--CCCceEEEEEeC
Q 002884 846 --FS--KDQEGVLSAQKG 859 (870)
Q Consensus 846 --~~--~~~e~iL~~~K~ 859 (870)
+. .-+--|||.+|+
T Consensus 275 ~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 275 TLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGSCC-CCCEEEEEEEEC
T ss_pred cccCCCCCCeEEEEEECC
Confidence 11 124458888885
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=0.022 Score=55.15 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=69.2
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC-----ccceecccccccc----CCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG-----LFGIYHDWCESFS----TYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG-----lig~~h~wce~f~----tyP-rtyDllHa~ 790 (870)
..|+|++||+||++.+|++. +- ..|+-+|.. ..|.++.+|- -+-++|++...+. .|+ ..+|-|-.|
T Consensus 25 ~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 25 KIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 35999999999999999875 32 357777765 7777777653 2455665554433 232 455654433
Q ss_pred ccccccc----CC--cChhhHHHhhhhcccCCcEEEEecChhh-HHHHHHHHHc
Q 002884 791 HLFSQLK----NR--CKLVPVMAEVDRIVRPGGKLIVRDEPSA-VTEVENFLKS 837 (870)
Q Consensus 791 ~lfS~~~----~r--c~~~~vl~EmDRILRPgG~~iird~~~~-~~~~~~~~~~ 837 (870)
-=.|.++ .| ..+...|..+-++|+|||.+++-.-... -..++.+++.
T Consensus 103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 1112111 11 2344788999999999999976543332 2345555553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.082 Score=54.13 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=61.7
Q ss_pred ccccccccccccchhHHhhhcCC-CeEEEEeccCCCC------CChhH---HHhhCccceecccc-ccccCCCCccchhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP------DTLPI---IYERGLFGIYHDWC-ESFSTYPRSYDLLH 788 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~------~tl~~---i~eRGlig~~h~wc-e~f~tyPrtyDllH 788 (870)
..-++||-+|.|-|+.+..+.+. ++--+-+|.+|.. ..++. .++---+-++++-+ +-+..-+++||+|-
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 34688999999999999999987 5645556666632 11211 12222344555322 22334578999998
Q ss_pred hhcccccccCCcCh--hhHHHhhhhcccCCcEEEEe
Q 002884 789 ADHLFSQLKNRCKL--VPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 789 a~~lfS~~~~rc~~--~~vl~EmDRILRPgG~~iir 822 (870)
.+ +|.-...--.+ ...+-.+-|+|+|||.+++.
T Consensus 157 ~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 TD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred Ec-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 76 34322111111 14577889999999999987
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.98 E-value=0.14 Score=48.99 Aligned_cols=44 Identities=11% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 781 PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 781 PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
++.||+|=|-+||..... =....||-.+-+.|+|||+++|-...
T Consensus 130 ~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 130 PGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp CCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred CCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 378999999999987664 22346899999999999999998543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.23 E-value=0.37 Score=49.79 Aligned_cols=138 Identities=12% Similarity=0.179 Sum_probs=74.4
Q ss_pred ccccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHH----------HhhCccceec-cccccccCCCCccchh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPII----------YERGLFGIYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i----------~eRGlig~~h-~wce~f~tyPrtyDll 787 (870)
...++||-+|.|-|+.++.+.+. +|--+-+|.+|.. -+.+. ++.--+-+++ |--+-+...++.||+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~-Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH-HHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 45789999999999999999886 5533344554432 11111 1111222333 2112222346889998
Q ss_pred hhhcccccccCCcC--hhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEee------cCCCceEE
Q 002884 788 HADHLFSQLKNRCK--LVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFAF------SKDQEGVL 854 (870)
Q Consensus 788 Ha~~lfS~~~~rc~--~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~~------~~~~e~iL 854 (870)
-.|- |.-...--. -...+-.+-|+|+|||.++..-. .+.+..+...++..=..+.... ....-.++
T Consensus 184 I~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~ 262 (312)
T d2b2ca1 184 ITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYL 262 (312)
T ss_dssp EECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred EEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceee
Confidence 7652 221111011 12467789999999999999732 2334555555555444444321 11233578
Q ss_pred EEEeC
Q 002884 855 SAQKG 859 (870)
Q Consensus 855 ~~~K~ 859 (870)
+|-|.
T Consensus 263 ~aSk~ 267 (312)
T d2b2ca1 263 ICAKN 267 (312)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 88774
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.95 E-value=1.4 Score=40.78 Aligned_cols=93 Identities=9% Similarity=-0.098 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCCc-hhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC-------CCCCce
Q 002884 465 GKYTRVSLDVGCGVA-SFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ-------FPRNVF 532 (870)
Q Consensus 465 g~~~~~VLDIGCGtG-~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP-------fpd~SF 532 (870)
.+++.+||=+|||.. .++..+++ ..|+++|.++. +.+++++.|....+- ....... ...+-+
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~-----kl~~a~~lGa~~~i~-~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD-----KFPKAIELGATECLN-PKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG-----GHHHHHHTTCSEEEC-GGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH-----HHHHHHHcCCcEEEc-CCCchhHHHHHHHHhcCCCC
Confidence 467899999999864 34443443 37999999987 345666777543221 1111111 123458
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCC-CcEEEEEEC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRP-GGYFVWSAT 570 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKP-GG~Lv~S~~ 570 (870)
|+|+-.- .....+....+.|++ +|.+++...
T Consensus 99 d~vid~~-------g~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 99 DYAVECA-------GRIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SEEEECS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cEEEEcC-------CCchHHHHHHHHHHHhcCceEEEEE
Confidence 8888641 234566666666655 688887643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.16 E-value=0.7 Score=42.45 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=57.2
Q ss_pred CCCCCEEEEECC--CCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC------CCCCcee
Q 002884 465 GKYTRVSLDVGC--GVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ------FPRNVFD 533 (870)
Q Consensus 465 g~~~~~VLDIGC--GtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP------fpd~SFD 533 (870)
.+++.+||=.|+ |.|.++..|+.. .++++.-++. ..+++++.|....+. .....+. .....||
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~-----~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA-----KREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH-----HHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeecccc-----ccccccccccccccc-CCccCHHHHHHHHhCCCCEE
Confidence 356789999874 235566666653 7777776664 335666777653322 2221110 2345699
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|+.... ...+.++.++|+|+|.++..
T Consensus 97 ~v~d~~g--------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLA--------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence 9998521 25778889999999999975
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=80.07 E-value=0.72 Score=47.12 Aligned_cols=141 Identities=12% Similarity=0.031 Sum_probs=76.2
Q ss_pred ccccccccccccchhHHhhhcCC-CeEEEEeccCCCC------CChhHHH---hhCccceec-cccccccCCCCccchhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP------DTLPIIY---ERGLFGIYH-DWCESFSTYPRSYDLLH 788 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~------~tl~~i~---eRGlig~~h-~wce~f~tyPrtyDllH 788 (870)
...++||=+|.|-|+.++.+... ++--+-+|.+|.. ..++.+. +---+-+++ |.-+-+...++.||+|-
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45789999999999999999886 4533345555522 1112111 111123334 33333444578999998
Q ss_pred hhcccccccCCcCh--hhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe------ecCCCceEEE
Q 002884 789 ADHLFSQLKNRCKL--VPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA------FSKDQEGVLS 855 (870)
Q Consensus 789 a~~lfS~~~~rc~~--~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~ 855 (870)
+|..-.....-+.+ ...+..+-|.|+|||.+++.-. ......+...+++.=-.+... +..+.-.+++
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~ 247 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 247 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEE
Confidence 75322211111222 3678889999999999998632 222333333334433333322 2122336888
Q ss_pred EEeCC
Q 002884 856 AQKGN 860 (870)
Q Consensus 856 ~~K~~ 860 (870)
|.|..
T Consensus 248 aSk~~ 252 (295)
T d1inla_ 248 ASKGI 252 (295)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 88864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.06 E-value=0.22 Score=50.45 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred ccccccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHh-----hC-----------ccceeccccccccCCCCc
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYE-----RG-----------LFGIYHDWCESFSTYPRS 783 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~e-----RG-----------lig~~h~wce~f~tyPrt 783 (870)
..-++||-+|+|-|+.+.++...++--+-+|.+|. .-+.+..+ .| -+-++++=.-.|..=.++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH-HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 55789999999999999998887653334455542 22222211 01 012233211111111478
Q ss_pred cchhhhhcccccccCCcCh--hhHHHhhhhcccCCcEEEEe
Q 002884 784 YDLLHADHLFSQLKNRCKL--VPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~--~~vl~EmDRILRPgG~~iir 822 (870)
||+|-.| +|.-...-..+ ...+..+.|+|+|||.+++.
T Consensus 150 yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 9998764 33322111111 24678899999999999985
|