Citrus Sinensis ID: 002905

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------

MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFFHTNH

cccccEEEEEccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHcccccccccccccEEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEccccEEcccccccccccccEEEEEEEEEEEEccccEEEEEEEEcccccccccEEEccccccccccccccccccHHHHHHHcccccccEEEEEccccccccccc

ccccEEEEEEccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccEEcccccEEEccccccccccHHHHHHcHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHEEEcccccccEEEEEEEEEccEEEEEEEEEEEccHHHHHcEEEEEEcccccEEEEcccccEEcccccEEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEccEEEEHHHHcccccccHHHHHHHHHHHHHHcEEEEEEEcccccccc

meksctllihfdkgtPAIANEIKEalegndvpaKVDAMKKAIMLLLNGETLPQLFITIVRyvlpsedhTIQKLLLLYLEIIDktdakgrvlPEMILICQNLRnnlqhpneyiRGVTLRFLCRlneteiieplipSVLQNLQHRHPYIRRNAILAVMAIYklpqgeqllvdaPEMIEKVLsteqdpsakRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTlvslssapTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAlnspnldirRKTLDIVLELITPRNINEVVLMLKKEVVKTqsgeleknGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLgdsnvasaIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQClgelpffsvseegedtdsskkvQQQASsttvssrrpavladgtyatqsaasetafspptivqgtltsgnlrsllltGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLqlgqspvlphpidndsfDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQishaqpddlidfyhlksrkgmsqlelEDEVQDDLKRATGefvkegddankLNRILqltgfsdpvyaeaYVTVHHYDIVLDVTVINRTKETLQNLCLELATmgdlklverpqnytlapesskqIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHidimdyispavctdAAFRTMWAEFEWENKVSLALVSCFFHTNH

MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCrtnkgekgkyIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRalnspnldirRKTLDIVLElitprninevVLMLKKEVVKTqsgeleknGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEegedtdsskkvqqqassttvssrrpavlADGTYATQsaasetafsppTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLrleevqpsrveVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAkaqishaqpddLIDFYHLKSRKGMSQLELEDEVQDDLKRATGefvkegddanklNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNytlapesskqikanikvsstetgVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFFHTNH

MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNkgekgkyikiiiSLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINevvlmlkkevvkTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKvqqqassttvssRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFFHTNH

****CTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKV**********RNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFS**************************************************TIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKML************************LIDFYHL********************************ANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTL********KANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFFH***

**KSCTLLIHFDKGTPA**************PAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFF********************************ADGTYATQSAASE**************SGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQP*RVEVNKASSQALLIMVSMLQLGQS*******DNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFV*************************DDLIDFYHLKS**********DEVQDDLK******************ILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSC*F*T**

MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVS************************RPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSE****************HAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFFHTNH

*EKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSE************************PAVLADGTYATQSAAS**************TSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELK*****SHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSCFF****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		867	2.2.26 [Sep-21-2011]
Q9SV21		948	Coatomer subunit beta-1 O	yes	no	0.986	0.901	0.848	0.0
Q9SV20		948	Coatomer subunit beta-2 O	yes	no	0.986	0.901	0.844	0.0
Q53PC7		953	Coatomer subunit beta-1 O	yes	no	0.990	0.901	0.788	0.0
Q0JNK5		950	Coatomer subunit beta-2 O	no	no	0.989	0.903	0.777	0.0
Q9JIF7		953	Coatomer subunit beta OS=	yes	no	0.970	0.882	0.484	0.0
P23514		953	Coatomer subunit beta OS=	yes	no	0.970	0.882	0.484	0.0
A0JN39		953	Coatomer subunit beta OS=	yes	no	0.967	0.880	0.485	0.0
Q5ZIA5		953	Coatomer subunit beta OS=	yes	no	0.967	0.880	0.486	0.0
P53618		953	Coatomer subunit beta OS=	yes	no	0.967	0.880	0.485	0.0
D2SW95		953	Coatomer subunit beta OS=	yes	no	0.967	0.880	0.485	0.0

>sp\|Q9SV21\|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2	Back alignment and function desciption

 Score = 1513 bits (3916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/856 (84%), Positives = 802/856 (93%), Gaps = 1/856 (0%)

Query: 1   MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVR 60
           M+KS T+L+H+DKGTPA+ANEIKEALEGNDV AKVDAMKKAIMLLLNGET+PQLFITI+R
Sbjct: 1   MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIR 60

Query: 61  YVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120
           YVLPSEDHTIQKLLLLYLE+I+KTD+KG+VLPEMILICQNLRNNLQHPNEYIRGVTLRFL
Sbjct: 61  YVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120

Query: 121 CRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS 180
           CR+ ETEI+EPL PSVLQNL+HRHP++RRNAILA+M+IYKLPQG+QL VDAPEMIEKVLS
Sbjct: 121 CRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILAIMSIYKLPQGDQLFVDAPEMIEKVLS 180

Query: 181 TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK 240
           TEQDPSAKRNAFLMLFTC ++RA+NYLL++VD+VS+W E LQMVVLELIR VC+T   EK
Sbjct: 181 TEQDPSAKRNAFLMLFTCAEERAVNYLLSNVDKVSDWNESLQMVVLELIRSVCKTKPAEK 240

Query: 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVL 300
           GKYIKIIISLL+A S+AVIYECAGTLVSLSSAPTAIRAAANTY QLLLSQSDNNVKLI+L
Sbjct: 241 GKYIKIIISLLSATSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLILL 300

Query: 301 DRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEV 360
           DRL EL++ HRDIMV+LI+DVLRAL+SPNLDIRRKTLDI L+LIT  NINEVV MLKKEV
Sbjct: 301 DRLYELKTLHRDIMVELIIDVLRALSSPNLDIRRKTLDISLDLITHHNINEVVQMLKKEV 360

Query: 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVR 420
           VKTQSGELEKNGEYRQMLIQAIH+CA+KFPEVASTVVHLLMDFLGDSNVASA+DV++FVR
Sbjct: 361 VKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVR 420

Query: 421 EIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480
           EIIE NPKLRVSIITRLLD FYQIRA +VC CALWIIGEYC SLSEVE+GI+TI QCLGE
Sbjct: 421 EIIETNPKLRVSIITRLLDTFYQIRAGKVCPCALWIIGEYCLSLSEVESGISTITQCLGE 480

Query: 481 LPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQG 540
           LPF+SVSEE E T++SKK+ Q  SS  VSSR+P +LADGTYATQSAASET FS PT+VQG
Sbjct: 481 LPFYSVSEESEPTETSKKI-QPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQG 539

Query: 541 TLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQL 600
           +LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK  +QALLIMVSMLQL
Sbjct: 540 SLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVTQALLIMVSMLQL 599

Query: 601 GQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELK 660
           GQSPV PHPIDNDS++RIV+CI+LLC+  D ++KIWL+SCRQSFVKM+SEKQLRE EELK
Sbjct: 600 GQSPVSPHPIDNDSYERIVLCIKLLCHRNDEMKKIWLESCRQSFVKMISEKQLREMEELK 659

Query: 661 AKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQ 720
           AK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQ
Sbjct: 660 AKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQ 719

Query: 721 LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLA 780
           LTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LA
Sbjct: 720 LTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLA 779

Query: 781 PESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAA 840
           PE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ A
Sbjct: 780 PERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVA 839

Query: 841 FRTMWAEFEWENKVSL 856
           FRTMWAEFEWENKV++
Sbjct: 840 FRTMWAEFEWENKVAV 855

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SV20\|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2	Back alignment and function description

>sp\|Q53PC7\|COPB1_ORYSJ Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1	Back alignment and function description

>sp\|Q0JNK5\|COPB2_ORYSJ Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1	Back alignment and function description

>sp\|Q9JIF7\|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1	Back alignment and function description

>sp\|P23514\|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1	Back alignment and function description

>sp\|A0JN39\|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIA5\|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1	Back alignment and function description

>sp\|P53618\|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3	Back alignment and function description

>sp\|D2SW95\|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		867
225429750		948	PREDICTED: coatomer subunit beta-1 [Viti	0.989	0.905	0.925	0.0
224143423		949	predicted protein [Populus trichocarpa]	0.987	0.902	0.914	0.0
224121310		949	predicted protein [Populus trichocarpa]	0.987	0.902	0.907	0.0
356521768		950	PREDICTED: coatomer subunit beta-1-like	0.989	0.903	0.861	0.0
356526314		950	PREDICTED: coatomer subunit beta-1-like	0.989	0.903	0.858	0.0
449461669		950	PREDICTED: coatomer subunit beta-1-like	0.986	0.9	0.863	0.0
449516748		854	PREDICTED: coatomer subunit beta-1-like,	0.982	0.997	0.865	0.0
5262759		971	putative protein [Arabidopsis thaliana]	0.986	0.880	0.848	0.0
334187061		948	coatomer subunit beta-1 [Arabidopsis tha	0.986	0.901	0.848	0.0
30689050		948	coatomer subunit beta-2 [Arabidopsis tha	0.986	0.901	0.844	0.0

>gi\|225429750\|ref\|XP_002282410.1\| PREDICTED: coatomer subunit beta-1 [Vitis vinifera] gi\|147845891\|emb\|CAN82167.1\| hypothetical protein VITISV_023269 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1637 bits (4240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/859 (92%), Positives = 837/859 (97%), Gaps = 1/859 (0%)

Query: 1   MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVR 60
           MEKSC+LLI+FDKGTPAIANEIKEALEGND  AK++AMKKAIMLLLNGETLPQLFITIVR
Sbjct: 1   MEKSCSLLIYFDKGTPAIANEIKEALEGNDDYAKIEAMKKAIMLLLNGETLPQLFITIVR 60

Query: 61  YVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120
           YVLPSEDHT+QKLLLLYLEII+KTDAKG+V+PEMILICQNLRNNLQHPNEYIRGVTLRFL
Sbjct: 61  YVLPSEDHTVQKLLLLYLEIIEKTDAKGKVMPEMILICQNLRNNLQHPNEYIRGVTLRFL 120

Query: 121 CRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS 180
           CRLNE EIIEPLIPSVLQNL+HRHP+IRRNAILAVM+IYKLPQGEQLLVDAPEMIEKVLS
Sbjct: 121 CRLNEAEIIEPLIPSVLQNLEHRHPFIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLS 180

Query: 181 TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK 240
           TEQDPSAKRNAFLMLFTC QDRAINYLLTHVDRV EWGELLQMVVLELIRKVCRTN+GEK
Sbjct: 181 TEQDPSAKRNAFLMLFTCAQDRAINYLLTHVDRVPEWGELLQMVVLELIRKVCRTNRGEK 240

Query: 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVL 300
           GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTY QLLLSQSDNNVKLIVL
Sbjct: 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVL 300

Query: 301 DRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEV 360
           DRLNEL+SSHR+IMVD+IMDVLRAL+SPNLDIRRKTLDIVLELITPRNINEVVL LKKEV
Sbjct: 301 DRLNELKSSHREIMVDMIMDVLRALSSPNLDIRRKTLDIVLELITPRNINEVVLTLKKEV 360

Query: 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVR 420
           VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDV++FVR
Sbjct: 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVVVFVR 420

Query: 421 EIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480
           EIIE NPKLRVSIITRLLD FYQIRAARVC+CALWIIGEYC SLSEVE+GI TIKQCLG+
Sbjct: 421 EIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGITTIKQCLGD 480

Query: 481 LPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQG 540
           LPFFSVSEEGE +DSSKKV QQ ++TTVSSRRPAVLADGTYATQSAASETAFSPPT+VQG
Sbjct: 481 LPFFSVSEEGEASDSSKKV-QQVNATTVSSRRPAVLADGTYATQSAASETAFSPPTLVQG 539

Query: 541 TLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQL 600
           +L+SGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPS+ EVNK SSQALLIMVSMLQL
Sbjct: 540 SLSSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSKAEVNKVSSQALLIMVSMLQL 599

Query: 601 GQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELK 660
           GQS VLPHPIDNDS+DRIV+CIRLLCNTGD+IRKIWLQSCRQS+VKML++KQLRE+EE+K
Sbjct: 600 GQSSVLPHPIDNDSYDRIVLCIRLLCNTGDDIRKIWLQSCRQSYVKMLADKQLRETEEIK 659

Query: 661 AKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQ 720
           AKAQIS+AQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEF+K+GDDANKLNRILQ
Sbjct: 660 AKAQISYAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFIKDGDDANKLNRILQ 719

Query: 721 LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLA 780
           LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLV+RPQNYTLA
Sbjct: 720 LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLA 779

Query: 781 PESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAA 840
           PESSKQIKANIKVSSTETGVIFGNIVYETSNV ER VVVLNDIHIDIMDYISPAVCTD A
Sbjct: 780 PESSKQIKANIKVSSTETGVIFGNIVYETSNVHERMVVVLNDIHIDIMDYISPAVCTDVA 839

Query: 841 FRTMWAEFEWENKVSLALV 859
           FRTMWAEFEWENKV++  V
Sbjct: 840 FRTMWAEFEWENKVAVNTV 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224143423\|ref\|XP_002324951.1\| predicted protein [Populus trichocarpa] gi\|222866385\|gb\|EEF03516.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224121310\|ref\|XP_002330795.1\| predicted protein [Populus trichocarpa] gi\|222872597\|gb\|EEF09728.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521768\|ref\|XP_003529523.1\| PREDICTED: coatomer subunit beta-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356526314\|ref\|XP_003531763.1\| PREDICTED: coatomer subunit beta-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449461669\|ref\|XP_004148564.1\| PREDICTED: coatomer subunit beta-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449516748\|ref\|XP_004165408.1\| PREDICTED: coatomer subunit beta-1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|5262759\|emb\|CAB45907.1\| putative protein [Arabidopsis thaliana] gi\|7270051\|emb\|CAB79866.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|334187061|ref|NP_194876.2| coatomer subunit beta-1 [Arabidopsis thaliana] gi|334187063|ref|NP_001190880.1| coatomer subunit beta-1 [Arabidopsis thaliana] gi|146286090|sp|Q9SV21.2|COPB1_ARATH RecName: Full=Coatomer subunit beta-1; AltName: Full=Beta-coat protein 1; Short=Beta-COP 1 gi|332660518|gb|AEE85918.1| coatomer subunit beta-1 [Arabidopsis thaliana] gi|332660519|gb|AEE85919.1| coatomer subunit beta-1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|30689050\|ref\|NP_194877.2\| coatomer subunit beta-2 [Arabidopsis thaliana] gi\|146286091\|sp\|Q9SV20.2\|COPB2_ARATH RecName: Full=Coatomer subunit beta-2; AltName: Full=Beta-coat protein 2; Short=Beta-COP 2 gi\|332660520\|gb\|AEE85920.1\| coatomer subunit beta-2 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		867
TAIR\|locus:2125259		948	AT4G31490 [Arabidopsis thalian	0.986	0.901	0.813	0.0
MGI\|MGI:1917599		953	Copb1 "coatomer protein comple	0.970	0.882	0.470	1.8e-199
RGD\|620861		953	Copb1 "coatomer protein comple	0.970	0.882	0.470	1.8e-199
UNIPROTKB\|A0JN39		953	COPB1 "Coatomer subunit beta"	0.970	0.882	0.470	2.9e-199
UNIPROTKB\|Q5ZIA5		953	COPB1 "Coatomer subunit beta"	0.970	0.882	0.471	3.6e-199
UNIPROTKB\|P53618		953	COPB1 "Coatomer subunit beta"	0.970	0.882	0.470	4.7e-199
UNIPROTKB\|E2R9A2		953	COPB1 "Coatomer subunit beta"	0.970	0.882	0.469	7.6e-199
UNIPROTKB\|D2SW95		953	COPB1 "Coatomer subunit beta"	0.970	0.882	0.470	7.6e-199
ZFIN\|ZDB-GENE-030219-38		953	copb1 "coatomer protein comple	0.966	0.879	0.459	6.3e-195
FB\|FBgn0008635		964	betaCop "beta-coatomer protein	0.952	0.856	0.466	3.5e-194

TAIR\|locus:2125259 AT4G31490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3586 (1267.4 bits), Expect = 0., P = 0.
 Identities = 696/856 (81%), Positives = 772/856 (90%)

Query:     1 MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVR 60
             M+KS T+L+H+DKGTPA+ANEIKEALEGNDV AKVDAMKKAIMLLLNGET+PQLFITI+R
Sbjct:     1 MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIR 60

Query:    61 YVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120
             YVLPSEDHTIQKLLLLYLE+I+KTD+KG+VLPEMILICQNLRNNLQHPNEYIRGVTLRFL
Sbjct:    61 YVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120

Query:   121 CRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS 180
             CR+ ETEI+EPL PSVLQNL+HRHP++RRNAILA+M+IYKLP G+QL VDAPEMIEKVLS
Sbjct:   121 CRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILAIMSIYKLPHGDQLFVDAPEMIEKVLS 180

Query:   181 TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNXXXX 240
             TEQDPSAKRNAFLMLFTC ++RA+NYLL++VD+VS+W E LQMVVLELIR VC+T     
Sbjct:   181 TEQDPSAKRNAFLMLFTCAEERAVNYLLSNVDKVSDWNESLQMVVLELIRSVCKTKPAEK 240

Query:   241 XXXXXXXXSLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVL 300
                     SLL+A S+AVIYECAGTLVSLSSAPTAIRAAANTY QLLLSQSDNNVKLI+L
Sbjct:   241 GKYIKIIISLLSATSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLILL 300

Query:   301 DRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINXXXXXXXXXX 360
             DRL EL++ HRDIMV+LI+DVLRAL+SPNLDIRRKTLDI L+LIT  NIN          
Sbjct:   301 DRLYELKTLHRDIMVELIIDVLRALSSPNLDIRRKTLDIALDLITHHNINEVVQMLKKEV 360

Query:   361 XXTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVR 420
               TQSGELEKNGEYRQMLIQAIH+CA+KFPEVASTVVHLLMDFLGDSNVASA+DV++FVR
Sbjct:   361 VKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVR 420

Query:   421 EIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480
             EIIE NPKLRVSIITRLLD FYQIRA +VC CALWIIGEYC SLSEVE+GI+TI QCLGE
Sbjct:   421 EIIETNPKLRVSIITRLLDTFYQIRAGKVCPCALWIIGEYCLSLSEVESGISTITQCLGE 480

Query:   481 LPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQG 540
             LPF+SVSEE E T++SKK            R+P +LADGTYATQSAASET FS PT+VQG
Sbjct:   481 LPFYSVSEESEPTETSKKIQPTSSAMVSS-RKPVILADGTYATQSAASETTFSSPTVVQG 539

Query:   541 TLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQL 600
             +LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK  SQALLIMVS+LQL
Sbjct:   540 SLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVSQALLIMVSILQL 599

Query:   601 GQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELK 660
             GQSPV PHPIDNDS++RI++CI+LLC+    ++KIWL+SCRQSFVKM+SEKQLRE EELK
Sbjct:   600 GQSPVSPHPIDNDSYERIMLCIKLLCHRNVEMKKIWLESCRQSFVKMISEKQLREMEELK 659

Query:   661 AKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQ 720
             AK Q +HAQPDDLIDF+HLKSRKGMSQLELED+VQDDLKRATGEF K+ +DANKLNRILQ
Sbjct:   660 AKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQ 719

Query:   721 LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLA 780
             LTGFSDPVYAEAYVTVHHYDI L+VTVINRTKETLQNLCLELATMGDLKLVERPQNY+LA
Sbjct:   720 LTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLA 779

Query:   781 PESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAA 840
             PE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ A
Sbjct:   780 PERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVA 839

Query:   841 FRTMWAEFEWENKVSL 856
             FRTMWAEFEWENKV++
Sbjct:   840 FRTMWAEFEWENKVAV 855

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0030276 "clathrin binding" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI\|MGI:1917599 Copb1 "coatomer protein complex, subunit beta 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|620861 Copb1 "coatomer protein complex, subunit beta 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A0JN39 COPB1 "Coatomer subunit beta" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZIA5 COPB1 "Coatomer subunit beta" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P53618 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R9A2 COPB1 "Coatomer subunit beta" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|D2SW95 COPB1 "Coatomer subunit beta" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030219-38 copb1 "coatomer protein complex, subunit beta 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0008635 betaCop "beta-coatomer protein" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D2SW95	COPB_PIG	No assigned EC number	0.4855	0.9677	0.8803	yes	no
Q9SV20	COPB2_ARATH	No assigned EC number	0.8446	0.9861	0.9018	yes	no
Q9SV21	COPB1_ARATH	No assigned EC number	0.8481	0.9861	0.9018	yes	no
P23514	COPB_RAT	No assigned EC number	0.4843	0.9700	0.8824	yes	no
P41810	COPB_YEAST	No assigned EC number	0.3758	0.9584	0.8540	yes	no
Q5ZIA5	COPB_CHICK	No assigned EC number	0.4867	0.9677	0.8803	yes	no
Q23924	COPB_DICDI	No assigned EC number	0.4390	0.9250	0.8793	yes	no
Q9JIF7	COPB_MOUSE	No assigned EC number	0.4843	0.9700	0.8824	yes	no
P45437	COPB_DROME	No assigned EC number	0.4807	0.9457	0.8506	yes	no
A0JN39	COPB_BOVIN	No assigned EC number	0.4855	0.9677	0.8803	yes	no
Q5R922	COPB_PONAB	No assigned EC number	0.4844	0.9677	0.8803	yes	no
Q66HV4	COPB_DANRE	No assigned EC number	0.4725	0.9596	0.8730	yes	no
Q6FM46	COPB_CANGA	No assigned EC number	0.3770	0.9504	0.8477	yes	no
P53618	COPB_HUMAN	No assigned EC number	0.4855	0.9677	0.8803	yes	no
Q0JNK5	COPB2_ORYSJ	No assigned EC number	0.7770	0.9896	0.9031	no	no
Q29G21	COPB_DROPS	No assigned EC number	0.4778	0.9492	0.8528	yes	no
Q53PC7	COPB1_ORYSJ	No assigned EC number	0.7888	0.9907	0.9013	yes	no
Q9UUF7	COPB_SCHPO	No assigned EC number	0.3774	0.9677	0.8925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		867
pfam07718		279	pfam07718, Coatamer_beta_C, Coatamer beta C-termin	6e-88
pfam01602		522	pfam01602, Adaptin_N, Adaptin N terminal region	5e-84
COG5096		757	COG5096, COG5096, Vesicle coat complex, various su	1e-75
PTZ00429		746	PTZ00429, PTZ00429, beta-adaptin; Provisional	2e-11
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	0.002

>gnl\|CDD\|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region	Back alignment and domain information

 Score =  280 bits (718), Expect = 6e-88
 Identities = 108/190 (56%), Positives = 133/190 (70%), Gaps = 1/190 (0%)

Query: 668 AQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEF-VKEGDDANKLNRILQLTGFSD 726
             PD  I F  L  ++       ED     L  A G         ++KL+++ QLTGFSD
Sbjct: 1   VSPDKPISFSQLSPKRFADNNMGEDRFPSSLAAALGGEESAASSTSSKLHKVTQLTGFSD 60

Query: 727 PVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQ 786
           PVY EAYVTV+ YDIVLDV V+N+TK+TLQN  LELAT+GDLK+VE+P  +TLAPES K 
Sbjct: 61  PVYVEAYVTVNQYDIVLDVLVVNQTKDTLQNATLELATLGDLKIVEQPTPFTLAPESFKS 120

Query: 787 IKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWA 846
            +A +KVSSTE GVIFGNIVY+  +V++   V+LND+HIDIMDYI PA CTD  FR MW 
Sbjct: 121 FQATVKVSSTENGVIFGNIVYDGGHVMDTNHVILNDVHIDIMDYIRPAKCTDDDFRKMWL 180

Query: 847 EFEWENKVSL 856
           EFEWENKV++
Sbjct: 181 EFEWENKVTV 190

This family is found at the N-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal pfam01602 domain. Length = 279

>gnl\|CDD\|216598 pfam01602, Adaptin_N, Adaptin N terminal region	Back alignment and domain information

>gnl\|CDD\|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		867
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	100.0
COG5096		757	Vesicle coat complex, various subunits [Intracellu	100.0
PTZ00429		746	beta-adaptin; Provisional	100.0
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	100.0
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	100.0
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	100.0
PF07718		140	Coatamer_beta_C: Coatomer beta C-terminal region;	100.0
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	100.0
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	100.0
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	100.0
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	100.0
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.95
PF14806		129	Coatomer_b_Cpla: Coatomer beta subunit appendage p	99.87
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.53
PRK09687		280	putative lyase; Provisional	99.48
PTZ00429		746	beta-adaptin; Provisional	99.4
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.37
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.37
PRK09687		280	putative lyase; Provisional	99.26
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.21
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.89
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.73
COG5096		757	Vesicle coat complex, various subunits [Intracellu	98.71
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.67
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.66
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.51
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.49
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.47
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.43
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.42
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.37
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.35
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	98.34
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.33
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.32
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	98.3
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.29
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.28
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.26
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.26
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.25
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.23
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	98.2
TIGR02270		410	conserved hypothetical protein. Members are found	98.13
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.09
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.07
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.03
TIGR02270		410	conserved hypothetical protein. Members are found	97.98
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.95
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.95
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.89
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.88
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.82
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.8
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.77
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.74
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.7
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	97.66
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.57
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.56
PF14764		459	SPG48: AP-5 complex subunit, vesicle trafficking	97.46
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.4
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.39
KOG2025		892	consensus Chromosome condensation complex Condensi	97.36
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.23
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.19
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.02
PF05804		708	KAP: Kinesin-associated protein (KAP)	96.99
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.98
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.87
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	96.83
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	96.82
KOG0414		1251	consensus Chromosome condensation complex Condensi	96.79
KOG0567		289	consensus HEAT repeat-containing protein [General	96.74
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.68
KOG1242		569	consensus Protein containing adaptin N-terminal re	96.6
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	96.54
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	96.51
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	96.36
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.31
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	96.3
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.29
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	96.24
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.15
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	96.13
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.11
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.98
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	95.95
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	95.93
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.87
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	95.8
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.78
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	95.77
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	95.74
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	95.6
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	95.57
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	95.56
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	95.54
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	95.33
KOG0567		289	consensus HEAT repeat-containing protein [General	94.89
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.8
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	94.64
COG5098		1128	Chromosome condensation complex Condensin, subunit	94.59
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	94.56
KOG0414		1251	consensus Chromosome condensation complex Condensi	94.44
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.08
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	94.07
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	94.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.92
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	93.91
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	93.91
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	93.9
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	93.1
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.95
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	92.91
KOG2025		892	consensus Chromosome condensation complex Condensi	92.43
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	92.4
KOG2956		516	consensus CLIP-associating protein [General functi	92.39
COG5098		1128	Chromosome condensation complex Condensin, subunit	92.35
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	92.03
KOG4653		982	consensus Uncharacterized conserved protein [Funct	92.0
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.96
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	91.95
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.89
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	91.89
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	91.56
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	91.53
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	91.46
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.39
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	91.26
KOG0413		1529	consensus Uncharacterized conserved protein relate	91.08
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.05
KOG4413		524	consensus 26S proteasome regulatory complex, subun	91.0
PF14631		1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	90.65
KOG1243		690	consensus Protein kinase [General function predict	90.34
KOG2062		929	consensus 26S proteasome regulatory complex, subun	89.9
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	89.52
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	89.41
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	89.39
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	89.01
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	87.76
KOG0413		1529	consensus Uncharacterized conserved protein relate	87.62
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	87.47
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	87.41
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	87.25
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	87.15
KOG2062		929	consensus 26S proteasome regulatory complex, subun	86.78
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	86.73
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	86.65
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	86.3
KOG2956		516	consensus CLIP-associating protein [General functi	86.27
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	86.12
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	86.02
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	85.93
KOG2137		700	consensus Protein kinase [Signal transduction mech	85.61
KOG1293		678	consensus Proteins containing armadillo/beta-caten	85.55
KOG2032		533	consensus Uncharacterized conserved protein [Funct	85.51
COG5116		926	RPN2 26S proteasome regulatory complex component [	84.84
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	84.76
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	84.06
PF06280		112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	84.03
KOG2973		353	consensus Uncharacterized conserved protein [Funct	83.62
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	82.8
KOG2137		700	consensus Protein kinase [Signal transduction mech	82.42
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	81.8
KOG2933		334	consensus Uncharacterized conserved protein [Funct	80.89
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	80.78
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	80.35

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=7.3e-222  Score=1839.00  Aligned_cols=847  Identities=57%  Similarity=0.920  Sum_probs=804.4

Q ss_pred             CCCceEEEEecCCCCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHH
Q 002905            1 MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEI   80 (867)
Q Consensus         1 ~~~~~t~~~~~~~~~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~   80 (867)
                      |+..|++|++.+..++++..+|++.|++++++.|+++||++|++|++|+++|.++|+||||+||++||++|||+|+|||+
T Consensus         4 ~~~~~~~~~~~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~   83 (948)
T KOG1058|consen    4 MEMVCYTLLNSPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWEL   83 (948)
T ss_pred             cccceeeeecCCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHH
Confidence            35678888888777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905           81 IDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK  160 (867)
Q Consensus        81 ~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~  160 (867)
                      +||.++||+++|||||+||++|||||||||||||.+|||||++++||+++|++|.|+.||+|||+||||+|++|++.||+
T Consensus        84 vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk  163 (948)
T KOG1058|consen   84 VPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYK  163 (948)
T ss_pred             ccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH
Q 002905          161 LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK  240 (867)
Q Consensus       161 l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~  240 (867)
                        .+.+++||+|++++.||..|+||+|+||||.+|.+++|++|++||..+++++++|++.+|++|+++|++.|..+|+++
T Consensus       164 --~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~  241 (948)
T KOG1058|consen  164 --NFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK  241 (948)
T ss_pred             --hhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence              899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002905          241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD  320 (867)
Q Consensus       241 ~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~  320 (867)
                      .++++++.++|++++++|+||||.+|+.++++|+++++++.++++++.+++|||+|+|+|++|..+...|.+++++++|+
T Consensus       242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD  321 (948)
T KOG1058|consen  242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD  321 (948)
T ss_pred             hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHH
Q 002905          321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL  400 (867)
Q Consensus       321 il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~L  400 (867)
                      ++++|+.+|.+||+|+|++.++|++++|+++|++.|+||+.++.+.+.|++.+||++++++||.||.+||+++..+|+.|
T Consensus       322 vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~l  401 (948)
T KOG1058|consen  322 VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLL  401 (948)
T ss_pred             HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877788999999999999999999999999999999


Q ss_pred             HHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHhhCC
Q 002905          401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE  480 (867)
Q Consensus       401 l~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~~  480 (867)
                      ++++++.++..+.+++.|++++++++|++|..|+++|++.|+.|++++++++++||+||||....+++.+|+.+++++|+
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGE  481 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGE  481 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCccCCCCcchhhhhhccccccccCCCCeecCCCCeeccccccccCCCCCccccCccCC-hhhHHhhhcCChhhH
Q 002905          481 LPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTS-GNLRSLLLTGDFFLG  559 (867)
Q Consensus       481 ~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Dgtyat~~~~~~~~~~~~~~~~~~~~~-~~lr~~~~~gd~~l~  559 (867)
                      +|++.+|.+...++..++.+.. .......++|+|++|||||||||+++++++      ++.+. |+||+++++||||+|
T Consensus       482 vp~~~sei~~~~~~~~~e~~~~-~~s~~~~~~~~v~~dGTYAteSA~s~~~~~------~~~~~rp~lrr~ll~Gdfflg  554 (948)
T KOG1058|consen  482 VPIVCSEIERLHGEQTKEIELT-SSSAPSSTKPKVLADGTYATESAFSSSSPT------VKEADRPSLRRFLLTGDFFLG  554 (948)
T ss_pred             cceehHHHhhhhcccccccccc-cccccccCCCeeecCccchhhhhhcccccc------hhhccchHHHHHhhcchHHHH
Confidence            9999998666655433332211 111234689999999999999999874432      34445 999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCcchHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhhcCChhHHHHHHHH
Q 002905          560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQS  639 (867)
Q Consensus       560 ~~la~~l~kl~~r~~~~~~~~~~~n~~~a~~~~i~~~~l~~~~~~~~~~~id~d~~~ri~~~~~~l~~~~~~~~~~~~~~  639 (867)
                      |++|+||||||+||..+..+..+.|+++||||+||+||||+|||++++++||+||.+||+.|||+|.+..|++..+|+++
T Consensus       555 A~la~tLtKl~lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~~~~~~Id~Ds~erI~~cIr~L~~~~p~~~~~f~~~  634 (948)
T KOG1058|consen  555 AVLAITLTKLVLRFEELEGPKTRQNALKAEALLIMVSIIHLGKSSFVSKTIDNDSLERIMLCIRILVSRNPEMNSQFLDD  634 (948)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHhccccCCCCCcCcchHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhHHHHHHhcCCccCCc--chhhhhh
Q 002905          640 CRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGD--DANKLNR  717 (867)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~f~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~--~~~~l~~  717 (867)
                      ||++|+.|+.++.+++.++..++.++..+||||||+|+||++...  ...++|.|++||.+|+|.....++  ..|||+|
T Consensus       635 cr~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ddpI~f~q~~~~~s--~~~~en~fe~~L~~A~g~~~~~~~~s~~sKL~k  712 (948)
T KOG1058|consen  635 CRQSFEKMIDAKKKRRKEELLKKSQKTTAQPDDPINFRQLRSGRS--DERGENQFEEDLVQATGDAQKAEDGSPASKLNK  712 (948)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhccccCCCCCccchHhhcccch--hhhhhhHHHHHHHHHhccccccccCCcHHHhhc
Confidence            999999999999888888777788888999999999999986432  223678899999999997655444  4599999


Q ss_pred             hhcccCCCCcceEEEEeeeecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecc
Q 002905          718 ILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTE  797 (867)
Q Consensus       718 v~qltg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste  797 (867)
                      |+|||||||||||||||+|||||||||||+||||++||||+++||||+||||+||||+|++|+||+|+++||||||+|||
T Consensus       713 V~QLtGfSDPVYaEAyv~vnqyDIVLDvL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsSte  792 (948)
T KOG1058|consen  713 VTQLTGFSDPVYAEAYVTVNQYDIVLDVLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTE  792 (948)
T ss_pred             eeeccCCCCCeeeEEEeeeeeeeEEEEEEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEEecC-CccccceEEccccccccccccccCCCCcHHHHhhccccccceeEEeec
Q 002905          798 TGVIFGNIVYETS-NVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLAL  858 (867)
Q Consensus       798 ~g~ifg~i~y~~~-~~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~feWENki~v~t  858 (867)
                      ||||||||+||++ ++.+++|||||||||||||||+||+|++++||+||+||||||||+|||
T Consensus       793 nGvIfGnIvY~~~~~a~~~~~VvLndIhidImDYI~Pa~~~d~~FRtmW~efEWENKvtv~t  854 (948)
T KOG1058|consen  793 NGVIFGNIVYDTSEAANDRNVVVLNDIHIDIMDYIKPAKCDDDEFRTMWAEFEWENKVTVNT  854 (948)
T ss_pred             CcEEEEEEEecCccccccceEEEeccccccHHHhcCCCcCChHHHHHHHHHhhhcceeeecc
Confidence            9999999999996 588999999999999999999999999999999999999999999999

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		867
2xa7_B		592	Ap2 Clathrin Adaptor Core In Active Complex With Ca		3e-13
2vgl_B		591	Ap2 Clathrin Adaptor Core Length = 591		3e-13
1w63_B		584	Ap1 Clathrin Adaptor Core Length = 584		5e-09

>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592

Back alignment and structure

Iteration: 1

Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 98/471 (20%), Positives = 194/471 (41%), Gaps = 47/471 (9%) Query: 21 EIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEI 80 E+K L + +A+KK I + G+ + LF +V + +++ ++KL+ LYL Sbjct: 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMN 75 Query: 81 IDKTDAKGRVLPEMILICQN-LRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQN 139 K+ P+M ++ N + + PN IR + +R + + +I E L + + Sbjct: 76 YAKSQ------PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKC 129 Query: 140 LQHRHPYIRRNAILAVMAIYKL------PQG-----EQLLVDAPEMI--EKVLSTEQDPS 186 L+ PY+R+ A + V ++ + QG L+ D+ M+ V + + Sbjct: 130 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 Query: 187 AKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNXXXXXXXXXX 246 + N+ L+ + IN LLT ++ +EWG Q+ +L+ + + Sbjct: 190 SHPNSNLLDLN---PQNINKLLTALNECTEWG---QIFILDCLSNYNPKDDREAQSICER 243 Query: 247 XXSLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLL---------LSQSDNNVKL 297 L+ ++AV+ L+ + ++ Y+ LL L + V+ Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFLEL---LPKDSDYYNMLLKKLAPPLVTLLSGEPEVQY 300 Query: 298 IVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINXXXXXXX 357 + L +N + +I+ I N P + ++ + LDI++ L + NI Sbjct: 301 VALRNINLIVQKRPEILKQEIKVFFVKYNDP-IYVKLEKLDIMIRLASQANI-------A 352 Query: 358 XXXXXTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVII 417 + E + ++ + ++AI CAIK + A V L+D + + I+ Sbjct: 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIV 412 Query: 418 FVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVE 468 +R+I P SII L +N + +WI+GEY + + + Sbjct: 413 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD 463

PyMOL of 2xa7

>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591

Back alignment and structure

>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		867
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	1e-110
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	2e-53
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	1e-49
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	2e-30
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
1r4x_A		275	Gamma1-COP, coatomer gamma subunit; appendage, bet	5e-08
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	7e-07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	3e-05
1qgr_A		876	Protein (importin beta subunit); transport recepto	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	7e-04
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	4e-04

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591	Back alignment and structure

 Score =  350 bits (899), Expect = e-110
 Identities = 96/490 (19%), Positives = 197/490 (40%), Gaps = 37/490 (7%)

Query: 11  FDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTI 70
           F         E+K  L       + +A+KK I  +  G+ +  LF  +V   + +++  +
Sbjct: 7   FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLEL 65

Query: 71  QKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIE 130
           +KL+ LYL    K+          I+   +   + + PN  IR + +R +  +   +I E
Sbjct: 66  KKLVYLYLMNYAKSQPD-----MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120

Query: 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE-KVLSTEQDPSAKR 189
            L   + + L+   PY+R+ A + V  ++ +    Q++ D   +   + L  + +P    
Sbjct: 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVA 178

Query: 190 NAFLMLFTCDQDRA-----------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG 238
           NA   L    +              IN LLT ++  +EWG   Q+ +L+ +      +  
Sbjct: 179 NAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG---QIFILDCLSNYNPKDDR 235

Query: 239 EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLL------LSQSD 292
           E     + +   L+  ++AV+      L+             N   + L      L   +
Sbjct: 236 EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGE 295

Query: 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352
             V+ + L  +N +     +I+    + V     +  + ++ + LDI++ L +  NI +V
Sbjct: 296 PEVQYVALRNINLIVQKRPEILKQE-IKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354

Query: 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASA 412
           +  LK+   +        + ++ +  ++AI  CAIK  + A   V  L+D +        
Sbjct: 355 LAELKEYATEV-------DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVV 407

Query: 413 IDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIA 472
            + I+ +R+I    P    SII  L +N   +         +WI+GEY + +   +  + 
Sbjct: 408 QEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLE 467

Query: 473 TIKQCLGELP 482
           +  +   +  
Sbjct: 468 SFLEGFHDES 477

PyMOL of 2vgl

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		867
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	100.0
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	100.0
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	100.0
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	100.0
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.65
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.6
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.6
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.58
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.58
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	99.57
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.49
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.48
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.46
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.42
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	99.42
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.41
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.41
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.41
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.34
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	99.34
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.33
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.31
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	99.3
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.3
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.28
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.28
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	99.27
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.26
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.24
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.23
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.22
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	99.2
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.19
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.17
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.15
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.14
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.14
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.11
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	99.08
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	99.04
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	99.03
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	99.02
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.93
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	98.92
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.84
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.8
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	98.79
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.72
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.71
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	98.63
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.51
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	98.51
3nmz_A		458	APC variant protein; protein-protein complex, arma	98.49
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	98.38
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.37
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.35
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	98.29
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.27
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.2
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	98.17
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.17
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	98.13
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.1
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.1
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	98.09
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	98.04
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	98.02
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.0
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	98.0
3nmz_A		458	APC variant protein; protein-protein complex, arma	97.95
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	97.92
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	97.89
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.78
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.54
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.51
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.45
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.4
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.29
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.19
3grl_A		651	General vesicular transport factor P115; vesicle t	97.18
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.15
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	97.01
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	96.9
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.88
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.6
3hs8_A		273	Adaptor protein complex AP-2, alpha 2 subunit; ada	96.54
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.54
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	96.47
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.46
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.37
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.23
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	96.22
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.08
1r4x_A		275	Gamma1-COP, coatomer gamma subunit; appendage, bet	96.05
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	95.99
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.97
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.79
1pzd_A		322	Coatomer gamma subunit; platform domain, appendage	95.72
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.63
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.58
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.24
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	95.19
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.19
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	95.17
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	95.17
3grl_A		651	General vesicular transport factor P115; vesicle t	95.02
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	94.98
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	94.87
1kyf_A		247	Alpha-adaptin C; protein-peptide complex, endocyto	94.75
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	94.17
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	93.78
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.93
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	92.15
1ho8_A		480	Vacuolar ATP synthase subunit H; heat repeat, hydr	90.35
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	90.21
3dad_A		339	FH1/FH2 domain-containing protein 1; formin, FHOD1	86.67
2g30_A		258	AP-2 complex subunit beta-1; alpha-helical ARH pep	85.86
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	85.74
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	83.9
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	83.69
2kzb_A		118	Autophagy-related protein 19; selective autophagy,	82.38
2b6c_A		220	Hypothetical protein EF3068; structural genomis, D	81.61
3jxy_A		232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	81.17

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

Probab=100.00  E-value=5.6e-66  Score=616.66  Aligned_cols=433  Identities=16%  Similarity=0.278  Sum_probs=387.4

Q ss_pred             ccHHHHHHHhcC---CChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002905           17 AIANEIKEALEG---NDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE   93 (867)
Q Consensus        17 ~~~~eIr~~L~s---~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E   93 (867)
                      .++++||+.|++   .+.++|+++|+|+||++++|+|++++||+|++ +++|+|+++||+||+|++.+++.++     +.
T Consensus        35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~-----e~  108 (621)
T 2vgl_A           35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNS-----EL  108 (621)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCH-----HH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCc-----HH
Confidence            467899999995   37889999999999999999999999999999 7799999999999999999955442     23


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhccCCCccccc--
Q 002905           94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNL--QHRHPYIRRNAILAVMAIYKLPQGEQLLV--  169 (867)
Q Consensus        94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L--~d~~pyVRK~A~lal~kI~~l~~~p~li~--  169 (867)
                      ++|+||+|+|||+||||++||+|||+||+|++|++++.+.|.|+++|  .|++|||||+|++|++++|+  .+|++++  
T Consensus       109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~  186 (621)
T 2vgl_A          109 IRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMG  186 (621)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCch
Confidence            69999999999999999999999999999999999999999999999  99999999999999999999  8999999  


Q ss_pred             chHHHHHHHHccCCChhHHHHHHHHHHhcchhhH------HHHHHHHhhhc---C-----------ccchHHHHHHHHHH
Q 002905          170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA------INYLLTHVDRV---S-----------EWGELLQMVVLELI  229 (867)
Q Consensus       170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a------l~~L~~~l~~i---~-----------~~~p~lQ~~iL~ll  229 (867)
                      ++.+.+.++| .|+|++|+.+|+.+|+++++++.      ++.+.+.+.++   +           ..+||+|+.+|+++
T Consensus       187 ~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll  265 (621)
T 2vgl_A          187 DWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL  265 (621)
T ss_dssp             SCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred             hHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence            8999999987 89999999999999999987552      22233333322   1           23799999999999


Q ss_pred             HHhhhc-CchhHHHHHHHHHHHHcC------------CCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHH
Q 002905          230 RKVCRT-NKGEKGKYIKIIISLLNA------------PST--AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN  294 (867)
Q Consensus       230 ~~~~~~-~p~~~~~li~~L~~lL~s------------~s~--aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~N  294 (867)
                      +.|++. +|+.+..+.+.+..++++            .|+  +|+|||+++++++.+.++.++.++.++..++ .++|+|
T Consensus       266 ~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L-~~~~~n  344 (621)
T 2vgl_A          266 QCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFL-QHRETN  344 (621)
T ss_dssp             GGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS-SCSCHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-cCCCcc
Confidence            999985 578888888888776632            233  9999999999999988888888888877665 689999


Q ss_pred             HHHHHHHHHHHHHhhCh--hhHHHHHHhheeccc-CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCC
Q 002905          295 VKLIVLDRLNELRSSHR--DIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN  371 (867)
Q Consensus       295 vk~ivL~~L~~L~~~~p--~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d  371 (867)
                      +||++|+.|..+...+|  .++++|...|+.||. |+|.+||++||++++.|+|++|++.|+.+|++++..       .|
T Consensus       345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~-------~d  417 (621)
T 2vgl_A          345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET-------AD  417 (621)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------CC
T ss_pred             hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh-------cC
Confidence            99999999999998886  789999999999999 999999999999999999999999999999988764       36


Q ss_pred             HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchH-hHH
Q 002905          372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAA-RVC  450 (867)
Q Consensus       372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~-~v~  450 (867)
                      .+||++++++|+.||.+||+.+.||+++|++++...++++..|++..+++++.++|++|.+++.+|++.+.+.... .+.
T Consensus       418 ~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li  497 (621)
T 2vgl_A          418 YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLV  497 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999876543 578


Q ss_pred             HHHhhHhhccCCCCCc
Q 002905          451 TCALWIIGEYCQSLSE  466 (867)
Q Consensus       451 ~~alWiLGEY~~~~~~  466 (867)
                      ++++|++||||+..++
T Consensus       498 ~~~~wilGEy~~~~~~  513 (621)
T 2vgl_A          498 KVGGYILGEFGNLIAG  513 (621)
T ss_dssp             HHHHHHHHHHTHHHHS
T ss_pred             HHHHHHhcchHHHhcc
Confidence            8999999999987765

PyMOL of 2vgl

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}	Back alignment and structure

>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17	Back alignment and structure

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		867
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-74
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-55
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-05
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		867
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	100.0
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.53
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.49
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.49
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.31
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.3
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.06
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.02
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.99
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.98
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.91
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.8
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.73
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.72
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.64
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.6
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.34
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.82
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.73
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	97.08
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.85
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	96.54
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.4
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	96.07
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	95.66
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	92.2
d1kyfa1		133	Alpha-adaptin AP2 ear domain, N-terminal subdomain	80.84

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure