Citrus Sinensis ID: 002926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860----
Protein Sequence
MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEESTVQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRVKFKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS
Secondary Structure (PSIPRED)
cccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHcccccccEEccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHccccccccHHHHHHHHcHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEEEEEcccEEEEEEEcccccccEEccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccEEEEEccccccHHHcccccHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccHHHHccccccccEEEEEcccccccccEEEEcccccccccHccccccccccccccEcccEEEEEcccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEcccccEEEEEccccccHHHHHHHccccccEEcccccccccccccccccccHHcHHHHHHcHHHHHcccccccccccHccccccccccccccccEEEcccccccEEEEEEEEcccccccccccccEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEccccccccccccccccccccccccccEEEEEEccccccccccccccccccccHcccccccccccccEEEcccccccccccccccccccccccccccccccEEccccccEEEccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHccccccccccHHHccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEccHcccccc
Coil and Loop (DISEMBL)
mafhvacpitckricfctlgfprsvqsskarndfVHDVVLVEEFlkdplgrfrvskeestvqvlvpevpqppppavavvdgagLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARRFESGyvataskdiageeqgqsntNVMCRLCFVGENEGCERARrmlsckscgkkyhrnCLKNWAqnrdlfhwsswkcpscriceicrrtgdpnkfmfcrrcdaayhcycqhpphknvssgpylcpkhtkchscgsnvpgnglsVRWFLGYtccdacgrlfvkgnycpvclkvyrdsestpmvccdvcqrwvhcqcdgisdekYLQFQVdgnlqyrcptcrgecyqvRDLEDAVRELWRRKDMADKDLIASLRAaaglptedeifsispysddeengpvvlknefGRSLKLSLkgvvdkspkkvKEHGKKWlnkkyprkkgyqmplnskpepdqsfegyhdvhsygnsfgddtqspknegldipssvagivshtegvcsisqpgilkhkyvdevmvsdddkisrvkfktskphdldsgeddgkhvsksktiKAKKLVINLGArkinvtnsprsdasscqreqdlttsngiedpslqrmnskfvldrhdgssklgdgdrvdhssqsrglkiagrggnvikfgrvrqevsdsntkvsrgssadehepehmhvlsgkrnidRSRAAVSRVGEVAALrgdrkqlesrpnasresnddtsvlqslpkdskpplrlkfrkpnlenqnsqvsqpeeEKSLIkgqrskrkrpspftektlfnededaaQSNQDSLMSEIMDANWILKKLGKDAIGKRVEvhqqsdnswhkgvvTDTVEGTSTLSITLDDSRVKTLElgkqgvrfvpqkqkrsms
Flexible Loop (DISEMBL)
mafhvacpitckricFCTLGFPRSVQSSKARNDFVHDVVLVEEflkdplgrfrvskEESTVQvlvpevpqpppPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARRFESGYVATASKDiageeqgqsntnVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLraaaglptedEIFSispysddeenGPVVLKNEFGRSLKLslkgvvdkspkkvkehgkkwlnkkyprkkgyqmplnSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEgvcsisqpgilkhkyvDEVMvsdddkisrvkfktskphdldsgeddgkhvsksktikakklvinlgarkinvtnsprsdasscqreqdlttsngiedpslqrMNSKFVLDRHDGssklgdgdrvdhssqsrglkiagrggnvikfgrvrqevsdsntkvsrgssadehepehmhvlsgkrnidrsRAAVSRVgevaalrgdrkqlesrpnasresnddtsvlqslpkdskpplrlkfrkpnlenqnsqvsqpeeekslikgqrskrkrpspftektlfnededaAQSNQDSLMSEIMDANWILKKLGKDAIGKRVevhqqsdnswhkgvvTDTVEgtstlsitlddsrvktlelgkqgvrfvpqkqkrsms
Low Complexity Region (SEG)
MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEESTvqvlvpevpqppppavavvdgagldaaeeaaaavsaQTKRValqrkaaaamvaaedyaRRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRVKFKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS
Disordered region (IsUnstruct)
**FHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVS******QVL**************V*********************VALQRKAAAAMVAAEDYARRFESGYVATA*************TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFS****************************************************************************************************VAGIVSHTEGVCSISQPGILKHKYVDEVMV**************************************KLVINLGA**************************************************************************VIKF******************************************************************************************************************************************************IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL*******************
Disordered Region (DISOPRED)
*AFHVACPITCKRICFCTLGFP************VHDVVLVEEFLKDPLG**********************************************************************************************VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVR***********
Disordered Region (DISEMBL)
MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEESTVQVLVPEVPQPPPPAVAVVDGAGLDAA*************************AAEDYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGV***********GKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRVKFK********************KTIKAKKLVINLGARKINVT****************TTSNGIEDPSLQRMNSKFVLDRHDGSSKL*************GLKIAGRGGNVIKFGRVRQ************************VLSGKRNIDRSRAAVSRVGEVAALRG**********************QSLPKDSKPPLRLKFRKPNLE****************************FTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFV*********
Disordered Region (DISPRO)
*AFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEESTVQVLVPEVPQP*****************************V**Q*K**AAMVAAEDYARRFESGYVATASK******QGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE*********AVRELWRRKDMADKDLIASLRAAAGLPTEDEIF*ISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDK******************************************************************************CSISQPGILKHKYVDEVMVSDDDKISRVKFKTSKP********************AKKLVI*LGA****************************************************************GLKIA***G***K************************************************************************************SKPPLRLKFRKPN***************************************************MSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEESTVQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRVKFKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	864	2.2.26 [Sep-21-2011]
Q9UMN6	2715	Histone-lysine N-methyltr	yes	no	0.202	0.064	0.333	3e-25
O08550	2713	Histone-lysine N-methyltr	yes	no	0.202	0.064	0.333	4e-25
Q8NEZ4	4911	Histone-lysine N-methyltr	no	no	0.207	0.036	0.308	7e-24
Q8BRH4	4903	Histone-lysine N-methyltr	no	no	0.207	0.036	0.308	1e-23
Q6PDK2	5588	Histone-lysine N-methyltr	no	no	0.216	0.033	0.297	2e-22
Q03164	3969	Histone-lysine N-methyltr	no	no	0.214	0.046	0.314	2e-22
O14686	5537	Histone-lysine N-methyltr	no	no	0.216	0.033	0.292	3e-22
P55200	3966	Histone-lysine N-methyltr	no	no	0.214	0.046	0.305	4e-21
Q24742	3828	Histone-lysine N-methyltr	N/A	no	0.230	0.051	0.266	5e-18
P20659	3726	Histone-lysine N-methyltr	no	no	0.247	0.057	0.253	1e-16

>sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=Homo sapiens GN=WBP7 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 164  MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMF-CRRCDA 222
            ++ C+ C   +H  CL+  A+     H  +W C  C+ C +C R G  +K +  C RC  
Sbjct: 1215 LVFCQVCCDPFHPFCLEE-AERPLPQHHDTWCCRRCKFCHVCGRKGRGSKHLLECERCRH 1273

Query: 223  AYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLF 279
            AYH  C  P +   ++     ++C    +C SCG+  PG    V W   Y+ C  C +L+
Sbjct: 1274 AYHPACLGPSYPTRATRKRRHWICSACVRCKSCGAT-PGKNWDVEWSGDYSLCPRCTQLY 1332

Query: 280  VKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPT 337
             KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SDE Y +   +  ++ Y C  
Sbjct: 1333 EKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSDEDYEILSGLPDSVLYTCGP 1392

Query: 338  CRG 340
            C G
Sbjct: 1393 CAG 1395

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|O08550|MLL4_MOUSE Histone-lysine N-methyltransferase MLL4 OS=Mus musculus GN=Wbp7 PE=1 SV=3

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 164  MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMF-CRRCDA 222
            ++ C+ C   +H  CL+  A+     H  +W C  C+ C +C R G  +K +  C RC  
Sbjct: 1221 LVFCQVCCDPFHPFCLEE-AERPSPQHRDTWCCRRCKFCHVCGRKGRGSKHLLECERCRH 1279

Query: 223  AYHCYCQHPPHKNVSSG---PYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLF 279
            AYH  C  P +   ++     ++C    +C SCG+  PG    V W   Y+ C  C  L+
Sbjct: 1280 AYHPACLGPSYPTRATRRRRHWICSACVRCKSCGAT-PGKNWDVEWSGDYSLCPRCTELY 1338

Query: 280  VKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPT 337
             KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SDE Y +   +  ++ Y C  
Sbjct: 1339 EKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSDEDYEILSGLPDSVLYTCGP 1398

Query: 338  CRG 340
            C G
Sbjct: 1399 CAG 1401

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3 PE=1 SV=3

 Score =  113 bits (282), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 208
            +C V  + G     R+L+C  CG+ YH  C+    +   +     W+C  C +CE C + 
Sbjct: 959  MCVVCGSFGQGAEGRLLACSQCGQCYHPYCVS--IKITKVVLSKGWRCLECTVCEACGKA 1016

Query: 209  GDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLG 268
             DP + + C  CD +YH YC  PP + V  G + C     C  CG+     GL   W   
Sbjct: 1017 TDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGAT--SAGLRCEWQNN 1074

Query: 269  YTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVD 328
            YT C  C  L    + CPVC + YR+ +   ++ C  C RW+H  C  ++ E+ ++   D
Sbjct: 1075 YTQCAPCASL----SSCPVCYRNYREEDL--ILQCRQCDRWMHAVCQNLNTEEEVENVAD 1128

Query: 329  GNLQYRCPTCR 339
              + + C  CR
Sbjct: 1129 --IGFDCSMCR 1137

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Central component of the MLL2/MLL3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. MLL3 may be a catalytic subunit of this complex. May be involved in leukemogenesis and developmental disorder.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3 PE=2 SV=2

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 208
            +C V  + G     R+L+C  CG+ YH  C+    +   +     W+C  C +CE C + 
Sbjct: 952  MCVVCGSFGQGAEGRLLACSQCGQCYHPYCVS--IKITKVVLSKGWRCLECTVCEACGKA 1009

Query: 209  GDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLG 268
             DP + + C  CD +YH YC  PP + V  G + C     C  CG+     GL   W   
Sbjct: 1010 TDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGAT--SAGLRCEWQNN 1067

Query: 269  YTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVD 328
            YT C  C  L    + CPVC + YR+ +   ++ C  C RW+H  C  ++ E+ ++   D
Sbjct: 1068 YTQCAPCASL----SSCPVCCRNYREEDL--ILQCRQCDRWMHAVCQNLNTEEEVENVAD 1121

Query: 329  GNLQYRCPTCR 339
              + + C  CR
Sbjct: 1122 --IGFDCSMCR 1130

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Central component of the MLL2/MLL3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. MLL3 may be a catalytic subunit of this complex.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q6PDK2|MLL2_MOUSE Histone-lysine N-methyltransferase MLL2 OS=Mus musculus GN=Mll2 PE=1 SV=2

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 15/202 (7%)

Query: 141  SNTN---VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCP 197
            SNT+   +M  +C V  + G      +L+C  C + YH  C+ +      L     W+C 
Sbjct: 1324 SNTDKFVLMQDMCVVCGSFGRGAEGHLLACSQCSQCYHPYCVNSKITKVMLL--KGWRCV 1381

Query: 198  SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVP 257
             C +CE+C +  DP++ + C  CD +YH YC  PP   V  G + C     C  CG+  P
Sbjct: 1382 ECIVCEVCGQASDPSRLLLCDDCDISYHTYCLDPPLLTVPKGGWKCKWCVSCMQCGAASP 1441

Query: 258  GNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317
              G    W   YT C  C  L      CPVC   Y + +   ++ C  C+RW+H  C+ +
Sbjct: 1442 --GFHCEWQNSYTHCGPCASLVT----CPVCHAPYVEEDL--LIQCRHCERWMHAGCESL 1493

Query: 318  SDEKYLQFQVDGNLQYRCPTCR 339
              E  ++   D    + C +C+
Sbjct: 1494 FTEDEVEQAADEG--FDCVSCQ 1513

Histone methyltransferase. Methylates 'Lys-4' of histone H3 (H3K4me). H3K4me represents a specific tag for epigenetic transcriptional activation. Plays a central role in beta-globin locus transcription regulation by being recruited by NFE2. Acts as a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription (By similarity). Plays an important role in controlling bulk H3K4me during oocyte growth and preimplantation development. Required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that preceeds resumption of meiosis, oocyte survival and normal zygotic genome activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q03164|MLL1_HUMAN Histone-lysine N-methyltransferase MLL OS=Homo sapiens GN=MLL PE=1 SV=5

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 12/197 (6%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLF-HWSSWKCPSCRICEICRR 207
            +CF+  + G       + C+ C + +H+ CL+     R L     +W C  C+ C +C R
Sbjct: 1433 VCFLCASSG---HVEFVYCQVCCEPFHKFCLEE--NERPLEDQLENWCCRRCKFCHVCGR 1487

Query: 208  TGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNGLSV 263
                 K +  C +C  +YH  C  P +    +     ++C K  +C SCGS  PG G   
Sbjct: 1488 QHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDA 1547

Query: 264  RWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKY 322
            +W   ++ C  C +LF KGN+CP+C K Y D +  + M+ C  C RWVH +C+ +SDE Y
Sbjct: 1548 QWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMY 1607

Query: 323  -LQFQVDGNLQYRCPTC 338
             +   +  ++ Y C  C
Sbjct: 1608 EILSNLPESVAYTCVNC 1624

Histone methyltransferase that plays an essential role in early development and hematopoiesis. Catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac). In the MLL1/MLL complex, it specifically mediates H3K4me, a specific tag for epigenetic transcriptional activation. Has weak methyltransferase activity by itself, and requires other component of the MLL1/MLL complex to obtain full methyltransferase activity. Has no activity toward histone H3 phosphorylated on 'Thr-3', less activity toward H3 dimethylated on 'Arg-8' or 'Lys-9', while it has higher activity toward H3 acetylated on 'Lys-9'. Required for transcriptional activation of HOXA9. Promotes PPP1R15A-induced apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O14686|MLL2_HUMAN Histone-lysine N-methyltransferase MLL2 OS=Homo sapiens GN=MLL2 PE=1 SV=2

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 15/202 (7%)

Query: 141  SNTN---VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCP 197
            SNT+   +M  +C V  + G      +L+C  C + YH  C+ +      L     W+C 
Sbjct: 1368 SNTDKFVLMQDMCVVCGSFGRGAEGHLLACSQCSQCYHPYCVNSKITKVMLL--KGWRCV 1425

Query: 198  SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVP 257
             C +CE+C +  DP++ + C  CD +YH YC  PP   V  G + C     C  CG+  P
Sbjct: 1426 ECIVCEVCGQASDPSRLLLCDDCDISYHTYCLDPPLLTVPKGGWKCKWCVSCMQCGAASP 1485

Query: 258  GNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 317
              G    W   YT C  C  L      CP+C   Y + +   ++ C  C+RW+H  C+ +
Sbjct: 1486 --GFHCEWQNSYTHCGPCASLVT----CPICHAPYVEEDL--LIQCRHCERWMHAGCESL 1537

Query: 318  SDEKYLQFQVDGNLQYRCPTCR 339
              E  ++   D    + C +C+
Sbjct: 1538 FTEDDVEQAADEG--FDCVSCQ 1557

Histone methyltransferase. Methylates 'Lys-4' of histone H3 (H3K4me). H3K4me represents a specific tag for epigenetic transcriptional activation. Plays a central role in beta-globin locus transcription regulation by being recruited by NFE2. Acts as a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription. Plays an important role in controlling bulk H3K4me during oocyte growth and preimplantation development. Required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that preceeds resumption of meiosis, oocyte survival and normal zygotic genome activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|P55200|MLL1_MOUSE Histone-lysine N-methyltransferase MLL OS=Mus musculus GN=Mll PE=1 SV=3

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 15/200 (7%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLF-HWSSWKCPSCRICEICRR 207
            +CF+  + G       + C+ C + +H+ CL+     R L     +W C  C+ C +C R
Sbjct: 1432 VCFLCASSG---HVEFVYCQVCCEPFHKFCLEE--NERPLEDQLENWCCRRCKFCHVCGR 1486

Query: 208  TGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNGLSV 263
                 K +  C +C  +YH  C  P +    +     ++C K  +C SCGS  PG G   
Sbjct: 1487 QHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDA 1546

Query: 264  RWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKY 322
            +W   ++ C  C +LF KGN+CP+C K Y D +  + M+ C  C RWVH +C+ +S  + 
Sbjct: 1547 QWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCESLSGTED 1606

Query: 323  LQFQVDGNL----QYRCPTC 338
              +++  NL     Y C  C
Sbjct: 1607 EMYEILSNLPESVAYTCVNC 1626

Histone methyltransferase that plays an essential role in early development and hematopoiesis. Catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac). In the MLL1/MLL complex, it specifically mediates H3K4me, a specific tag for epigenetic transcriptional activation. Has weak methyltransferase activity by itself, and requires other component of the MLL1/MLL complex to obtain full methyltransferase activity. Has no activity toward histone H3 phosphorylated on 'Thr-3', less activity toward H3 dimethylated on 'Arg-8' or 'Lys-9', while it has higher activity toward H3 acetylated on 'Lys-9'. Required for transcriptional activation of HOXA9. Promotes PPP1R15A-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis GN=trx PE=3 SV=1

 Score = 94.0 bits (232), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 52/251 (20%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCL----------------------------- 179
            LCF+  + G +    ++ C  C + YH+ C+                             
Sbjct: 1253 LCFLCGSTGLDP---LIFCACCCEPYHQYCVLDEYNLKHSSFEDTLMTSLLETSNNACAI 1309

Query: 180  ---KNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV 236
                N A N+ L    +W CP C +C  C  +      + C++C   YH  C     + +
Sbjct: 1310 SAATNTALNQ-LTQRLNWLCPRCTVCYTCNMSSGSK--VKCQKCQKNYHSTCLGTSKRLL 1366

Query: 237  SSG-PYLCPKHTKCHSCGSNVPGNGLSVRWFLG-YTCCDACGRLFVKGNYCPVCLKVYRD 294
             +  P +C    KC SC +        V  F+G    C AC +L  KGN+CP+C K Y D
Sbjct: 1367 GADRPLICVNCLKCKSCATT------KVSKFVGNLPMCTACFKLRKKGNFCPICQKCYDD 1420

Query: 295  SE-STPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPTCRGECYQVRDLEDAV 352
            ++    M+ C  C +WVH +C+G+SDE+Y L   +  ++++ C  C   C   R+  D  
Sbjct: 1421 NDFDLKMMECGDCNQWVHSKCEGLSDEQYNLLSTLPESIEFICKKCARRCDVSRNKADE- 1479

Query: 353  RELWRRKDMAD 363
               WR+  M +
Sbjct: 1480 ---WRQAVMEE 1487

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Functions in segment determination through interaction with genes of bithorax (BX-C) and antennapedia (ANT-C) complexes. Acts as an activator of BX-C. Involved in the very early regulation of homeotic genes expressed only in the posterior region of the embryo.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila melanogaster GN=trx PE=1 SV=4

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 54/268 (20%)

Query: 149  LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS---------------- 192
            LCF+  + G +    ++ C  C + YH+ C+++     +L H S                
Sbjct: 1268 LCFLCGSTGLDP---LIFCACCCEPYHQYCVQD---EYNLKHGSFEDTTLMGSLLETTVN 1321

Query: 193  ----------------SWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV 236
                            +W CP C +C  C  +      + C++C   YH  C     + +
Sbjct: 1322 ASTGPSSSLNQLTQRLNWLCPRCTVCYTCNMSSGSK--VKCQKCQKNYHSTCLGTSKRLL 1379

Query: 237  SSG-PYLCPKHTKCHSCGSNVPGNGLSVRWFLG-YTCCDACGRLFVKGNYCPVCLKVYRD 294
             +  P +C    KC SC +        V  F+G    C  C +L  KGN+CP+C + Y D
Sbjct: 1380 GADRPLICVNCLKCKSCSTT------KVSKFVGNLPMCTGCFKLRKKGNFCPICQRCYDD 1433

Query: 295  SE-STPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPTC--RGECYQVRDLE- 349
            ++    M+ C  C +WVH +C+G+SDE+Y L   +  ++++ C  C  R E  +++  E 
Sbjct: 1434 NDFDLKMMECGDCGQWVHSKCEGLSDEQYNLLSTLPESIEFICKKCARRNESSKIKAEEW 1493

Query: 350  -DAVRELWRRKDMADKDLIASLRAAAGL 376
              AV E ++    +   L++  R A  L
Sbjct: 1494 RQAVMEEFKASLYSVLKLLSKSRQACAL 1521

Histone methyltransferase. Methylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Functions in segment determination through interaction with genes of bithorax (BX-C) and antennapedia (ANT-C) complexes. Acts as an activator of BX-C. Involved in the very early regulation of homeotic genes expressed only in the posterior region of the embryo.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	864
449436315	847	PREDICTED: uncharacterized protein LOC10	0.956	0.975	0.642	0.0
224106097	845	predicted protein [Populus trichocarpa]	0.943	0.964	0.614	0.0
356544287	845	PREDICTED: uncharacterized protein LOC10	0.960	0.982	0.603	0.0
356529861	820	PREDICTED: uncharacterized protein LOC10	0.930	0.980	0.589	0.0
297833588	778	protein binding protein [Arabidopsis lyr	0.891	0.989	0.571	0.0
297736278	679	unnamed protein product [Vitis vinifera]	0.753	0.958	0.706	0.0
145338256	779	PHD finger-containing protein [Arabidops	0.891	0.988	0.564	0.0
6648214	764	unknown protein [Arabidopsis thaliana]	0.873	0.988	0.550	0.0
413916644	819	RING/FYVE/PHD-type zinc finger family pr	0.903	0.953	0.445	0.0
357151790	809	PREDICTED: uncharacterized protein LOC10	0.901	0.962	0.425	1e-179

>gi|449436315|ref|XP_004135938.1| PREDICTED: uncharacterized protein LOC101208296 [Cucumis sativus] gi|449488832|ref|XP_004158186.1| PREDICTED: uncharacterized protein LOC101230410 [Cucumis sativus]

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/885 (64%), Positives = 664/885 (75%), Gaps = 59/885 (6%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+RICFC LGF  ++Q+  A+N+F+  V+ VEEFLKDP G  RV   + T
Sbjct: 1   MAFHVACPITCRRICFCPLGFAPALQNGGAKNEFLDGVLKVEEFLKDPWG-IRVRDGKGT 59

Query: 61  VQVLVPEVPQPPPPAVAVVDG-----AGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAE 115
              +      PPPP V  V        G D  +E AAA+SAQTKR+ALQRKAAAAM+AAE
Sbjct: 60  TVQVWVPKVVPPPPPVQPVGVVGEALGGADGVDEMAAAMSAQTKRIALQRKAAAAMIAAE 119

Query: 116 DYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYH 175
           DYARRFESG +  AS +I GEEQGQSN NVMCR+CF GENE  ERAR+MLSCK+CGKKYH
Sbjct: 120 DYARRFESGNL-DASGNIVGEEQGQSNVNVMCRICFFGENESSERARKMLSCKTCGKKYH 178

Query: 176 RNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN 235
           R+CLK+WAQ+RDLFHWSSW CPSCR CE+CRRTGDPNKFMFC+RCD AYHCYCQHPPHKN
Sbjct: 179 RSCLKSWAQHRDLFHWSSWTCPSCRACEVCRRTGDPNKFMFCKRCDGAYHCYCQHPPHKN 238

Query: 236 VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDS 295
           VSSGPYLCPKHT+CHSCGSNVPGNG SVRWFLGYT CDACGRLFVKGNYCPVCLKVYRDS
Sbjct: 239 VSSGPYLCPKHTRCHSCGSNVPGNGQSVRWFLGYTFCDACGRLFVKGNYCPVCLKVYRDS 298

Query: 296 ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVREL 355
           ESTPMVCCD+CQRWVHC CD ISDEKYLQFQ+DGNLQY+C  CRGECYQV++LEDAV+E+
Sbjct: 299 ESTPMVCCDICQRWVHCHCDSISDEKYLQFQIDGNLQYKCTACRGECYQVKNLEDAVQEI 358

Query: 356 WRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVV 415
           WRR+D AD+DLI +LRAAAGLPT+DEIFSISPYSDDEENGP V+KNEFGRSLKLSLKG  
Sbjct: 359 WRRRDEADRDLIVNLRAAAGLPTQDEIFSISPYSDDEENGPAVVKNEFGRSLKLSLKGFA 418

Query: 416 DKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSP- 474
           DK PKK K++GKK  NKKY ++KG   PL ++ E DQ+FE  +DV   G   G++     
Sbjct: 419 DKVPKKSKDYGKKSSNKKYAKEKG--TPLANQSELDQNFEVRNDVQQSGFGEGNEKNGGL 476

Query: 475 ----KNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSK 529
                NEGLD  S VAG +SH EG CS++QPG+LKHK+VDEVMVSD++K S+ V+ K SK
Sbjct: 477 LPQNNNEGLDT-SPVAGSLSHNEGTCSVNQPGVLKHKFVDEVMVSDEEKTSKVVQIKASK 535

Query: 530 PHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIE 589
              LD+GED GK+ SKSKT K KKLVINLGARKINV  SP+SDASSCQR QDL  SN   
Sbjct: 536 AQGLDTGEDSGKYASKSKTAKGKKLVINLGARKINVATSPKSDASSCQRGQDLAVSN--- 592

Query: 590 DPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSN 649
                                   G++V++SSQS GLK      +V  FG+VR   SD+N
Sbjct: 593 ------------------------GEKVNNSSQSTGLKAGETENSVPSFGKVRFGSSDTN 628

Query: 650 TKVSRGSSADEHE---PEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDR----KQLESRP 702
           T   RG++A   E   P+   V S KRN++ S  AV  +G V+ ++ ++    KQLES  
Sbjct: 629 TTFGRGNTASGSEVGPPDGTRVFSRKRNMEGSTPAVGSLGGVSTVKEEKVPSGKQLESGS 688

Query: 703 NASRESNDD---TSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKR 759
           +   + +DD   T + QSLP+DSKP L+ KF+KP L+N   Q+S  EEEKSL+KGQRSKR
Sbjct: 689 HICNDGHDDNGQTPLPQSLPRDSKPLLKFKFKKPPLDN---QISCHEEEKSLVKGQRSKR 745

Query: 760 KRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWH 819
           KRPSP  EK  FNE ED  +S+QD+L+    DANWILKKLGKDAIGKRVEV   SD SW 
Sbjct: 746 KRPSPLMEKVPFNEVEDLTRSHQDNLLD---DANWILKKLGKDAIGKRVEVQHPSDKSWQ 802

Query: 820 KGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS 864
           KGVV D ++GTSTLS+ LDD R KTLELGKQG+R VP KQKRS S
Sbjct: 803 KGVVRDMIDGTSTLSVALDDGREKTLELGKQGIRLVPLKQKRSKS 847

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106097|ref|XP_002314042.1| predicted protein [Populus trichocarpa] gi|222850450|gb|EEE87997.1| predicted protein [Populus trichocarpa]

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/890 (61%), Positives = 645/890 (72%), Gaps = 75/890 (8%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+RICFC+LGFPR + S+K++ DF+ DV  ++EFLKDPLG  R S+E + 
Sbjct: 1   MAFHVACPITCRRICFCSLGFPRDLHSTKSKADFLFDVARIDEFLKDPLG-IRASREGT- 58

Query: 61  VQVLVPEVPQPPP----------PAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAA 110
             VLV      P             V+  D  G     E A   S QTKRVA+QR+AAAA
Sbjct: 59  --VLVSAPKVVPVPAPIPPTHSLEVVSARDREGDGGVVEDA--FSTQTKRVAIQRQAAAA 114

Query: 111 MVAAEDYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSC 170
             +AE YA++ ESG    AS+D  GE+ G       C++CFVG+  G ERAR+ML CKSC
Sbjct: 115 KASAEYYAKKVESGDT-VASEDTPGEDTGP-----FCQICFVGQTGGSERARKMLPCKSC 168

Query: 171 GKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQH 230
           GKKYHR+CLK WA++RDLFHWSSW CPSC+ CE+CR+TGDPNKF+FC+RCD AYHCYCQH
Sbjct: 169 GKKYHRSCLKTWARHRDLFHWSSWTCPSCQTCEVCRKTGDPNKFVFCKRCDGAYHCYCQH 228

Query: 231 PPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLK 290
           PPHKNVSSGPYLCPKHT+CHSCGS+VPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLK
Sbjct: 229 PPHKNVSSGPYLCPKHTRCHSCGSSVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLK 288

Query: 291 VYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLED 350
           VYRDSESTPMVCCD+CQRWVHC CDGISDEKYLQFQVDGNLQY+C TCRGECYQV+DL+D
Sbjct: 289 VYRDSESTPMVCCDICQRWVHCHCDGISDEKYLQFQVDGNLQYQCATCRGECYQVKDLKD 348

Query: 351 AVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLS 410
           A++ELWRR+D AD+ LIASLRAAAGLP +++IFSISPYSD + NGP  L+N+F  S+ LS
Sbjct: 349 AIQELWRRRDKADRGLIASLRAAAGLPAQEDIFSISPYSDGDGNGPEALRNDFRHSINLS 408

Query: 411 LKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGD- 469
           LKG+  KSPKK  +HGKK  NKK+P+KKG      SK EP Q     HD+HS  +   D 
Sbjct: 409 LKGIGGKSPKKSNDHGKKHWNKKFPKKKGCHAASISKSEPHQ-----HDIHSSVHDMDDC 463

Query: 470 ---DTQSPKNEGLDIP-SSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRV-K 524
              D++S    G D   S VAGIV+HTEGVCSISQPG+LKHK+VDEVMVSD ++ S V K
Sbjct: 464 KIYDSESQAKGGSDKSCSPVAGIVNHTEGVCSISQPGVLKHKFVDEVMVSDGERTSNVFK 523

Query: 525 FKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTT 584
            K++KPHD+DSG D  KH  KSK++KAK+LVINLGARKINV++ P+SD  SCQ E DL  
Sbjct: 524 IKSNKPHDVDSGGDTEKHAGKSKSVKAKRLVINLGARKINVSSPPKSDVQSCQSELDLKA 583

Query: 585 SNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGL-KIAGRGGNVIKFGRVRQ 643
           SN                            D  DHS Q+RGL K A R GN+IKFG+V+ 
Sbjct: 584 SNR---------------------------DTADHSGQTRGLIKFARREGNLIKFGKVKA 616

Query: 644 EVSDSNTKVSRGSSADEHEP---EHMHVLSGKRNIDRSRAAVSRVG-EVAALRGDR---- 695
           E S+ N K   GS +D +E    +H  V S K++++ SRA V   G EV  LR D+    
Sbjct: 617 EASNFNPKSDGGSHSDGYETVPLDHARVSSAKKSLEGSRAVVRPAGGEVPTLRSDKLSLG 676

Query: 696 KQLESRPNASRESNDD---TSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLI 752
           KQ E RP+   ESN D   T +  SLPK+SK  L+LK +KPNLENQ+S +   EEEKS I
Sbjct: 677 KQSEVRPDTHTESNGDSGDTPIFHSLPKESKLSLKLKIKKPNLENQSSLIHLHEEEKSNI 736

Query: 753 KGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQ 812
           +GQRSKRKR S   EKT++NEDE    S+ DS M+E   AN ILKKLGKDAIGKRVEVHQ
Sbjct: 737 RGQRSKRKRASSLMEKTMYNEDEGMPPSHLDSEMTE---ANRILKKLGKDAIGKRVEVHQ 793

Query: 813 QSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS 862
            SDNSWHKGVV+D VEGTS LS+TLDD  VKTL+LGKQ VR V QKQKRS
Sbjct: 794 PSDNSWHKGVVSDIVEGTSKLSVTLDDGIVKTLKLGKQAVRIVSQKQKRS 843

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544287|ref|XP_003540585.1| PREDICTED: uncharacterized protein LOC100815407 [Glycine max]

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/875 (60%), Positives = 646/875 (73%), Gaps = 45/875 (5%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSS-KARNDFVHDVVLVEEFLKDPLGRFRVSKEES 59
           MAFHVACPITC+RICFCTLGFPR++ +S  A N FVHDV  + +FL D        ++++
Sbjct: 1   MAFHVACPITCRRICFCTLGFPRALHASPDAPNAFVHDVSALRDFLAD------TRRDDA 54

Query: 60  TVQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYAR 119
           TVQVLVP+V  P PP    V   G DA +E+A   S + KR+ALQRK AAAM+AAE+YAR
Sbjct: 55  TVQVLVPKVLPPLPPPSDAVP-LGPDALDESA---SMKAKRIALQRKGAAAMIAAEEYAR 110

Query: 120 RFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCL 179
           RFESG V     ++ GEEQGQ+N +  CR+C  GENEG E+A++MLSCKSCGKKYHRNCL
Sbjct: 111 RFESGDVQNTPGNLTGEEQGQANRS-YCRICKCGENEGSEKAQKMLSCKSCGKKYHRNCL 169

Query: 180 KNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG 239
           ++W +NRDLFHWSSW CP CRICE CRRTGDP+KFMFC+RCD AYHCYC  PPHK+V +G
Sbjct: 170 RSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNG 229

Query: 240 PYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTP 299
           PYLC KH +CHSCGSNVPGNGLSVRWF+ YT CDACGRLF KGNYCPVCLKVYRDSESTP
Sbjct: 230 PYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTP 289

Query: 300 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRK 359
           MVCCD CQ WVHCQCD IS+EKY QFQVDGNLQY+CPTCRGECYQV++ EDA +E+WRR+
Sbjct: 290 MVCCDTCQLWVHCQCDNISEEKYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRR 349

Query: 360 DMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSP 419
           ++A++DLI+SLRAAAGLPT++EIFSISP+SDDE++GP+ LK+E  RS K SLK + + SP
Sbjct: 350 NIAERDLISSLRAAAGLPTQEEIFSISPFSDDEDSGPLKLKSESARSFKFSLKNLANDSP 409

Query: 420 KKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDV---HSYGNSFGDDTQSPKN 476
           KK         +KK  +KK  Q  + SK +   S EG+ D+   HS  +   DD QS +N
Sbjct: 410 KKKTS------SKKTAKKKNSQSFMTSKIDTHNSCEGHSDIKSLHSLDDDKNDDIQSQRN 463

Query: 477 EGLDIPSSVA-GIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLD 534
           EG D+ SS A G +S TE    I+QPGILK K+VDEVMVSD+++  R V+ K++K H  D
Sbjct: 464 EGPDVYSSPATGSLSQTEASFPINQPGILKQKFVDEVMVSDEERKPRVVRIKSNKAHIPD 523

Query: 535 SGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQ 594
           S E+ GKH  K++ +K KKLVINLGARKINV +SPRSD+SSCQ++QD  T NG ED S  
Sbjct: 524 SEEESGKHSLKTQNVKGKKLVINLGARKINVASSPRSDSSSCQKDQDPVTVNGNEDRSQW 583

Query: 595 RMNSKFVLDRHDGSSKL--GDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKV 652
           R   KF LDR D +++   G G +VD S QS+  +++GR GN+IK G+V+ ++S+ N   
Sbjct: 584 RKGDKFALDRQDDTARHIDGKGIKVD-SGQSKFFRVSGREGNLIKLGKVKPDISEFNLTS 642

Query: 653 SRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRES---- 708
            RG+ +D            K +ID     +++VG  A  RG+R  L  +   S ++    
Sbjct: 643 GRGNMSDGRI---------KHSID---GMINQVGIKATSRGERTYLGRQSEGSSDAYETD 690

Query: 709 -NDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTE 767
            N++ +   SLPKDSKP LR KF+KP++E+QNS     EEEK  IKGQRSKRKRPSPF E
Sbjct: 691 DNNNRTPSHSLPKDSKPLLRFKFKKPSIESQNS--PHQEEEKMTIKGQRSKRKRPSPFKE 748

Query: 768 KTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTV 827
           K  FNE E  +QS+QDS M  IMDANWIL KLG DAIGKRVEVHQ SDNSWHKG+VTD V
Sbjct: 749 KASFNESEGVSQSHQDSAMDGIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGLVTDVV 808

Query: 828 EGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS 862
           EGTS L + LDD +VKT+EL KQGVRFVPQKQKRS
Sbjct: 809 EGTSKLYVALDDGKVKTVELRKQGVRFVPQKQKRS 843

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529861|ref|XP_003533505.1| PREDICTED: uncharacterized protein LOC100809429 [Glycine max]

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/876 (58%), Positives = 629/876 (71%), Gaps = 72/876 (8%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARND--FVHDVVLVEEFLKDPLGRFRVSKEE 58
           MAFHVACPITC+RICFCTLGFPR++ ++       FVHDV  + +FL D        +++
Sbjct: 1   MAFHVACPITCRRICFCTLGFPRALHAAPDAAANAFVHDVASLRDFLAD------TRRDD 54

Query: 59  STVQVLVPEVPQPPPPAVAVVDGA--GLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAED 116
           +TVQV VP+V  PPPP     D    G DA +E+A   S + KR+ALQRK AAAM+AAE+
Sbjct: 55  ATVQVPVPKVLPPPPPPPPPSDAVSLGADALDESA---SMKAKRIALQRKGAAAMIAAEE 111

Query: 117 YARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHR 176
           YARRFESG V     ++ G++QGQ+N +  CR+C  GENEG E+A++MLSCKSCGKKYHR
Sbjct: 112 YARRFESGDVQNTPGNVTGDDQGQANRS-YCRICKCGENEGSEKAQKMLSCKSCGKKYHR 170

Query: 177 NCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV 236
           NCL++W +NRDLFHWSSW CP CRICE CRRTGDP+KFMFC+RCD AYHCYC  PPHK+V
Sbjct: 171 NCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSV 230

Query: 237 SSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE 296
            +GPYLC KH +CHSCGSNVPGNGLSVRWF+ YT CDACGRLF KGNYCPVCLKVYRDSE
Sbjct: 231 CNGPYLCTKHARCHSCGSNVPGNGLSVRWFMSYTNCDACGRLFTKGNYCPVCLKVYRDSE 290

Query: 297 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELW 356
           STPMVCCD CQ WVHCQCD ISDEKY QFQ+DGNLQY+CPTCRGECYQV++ EDA RE+W
Sbjct: 291 STPMVCCDSCQLWVHCQCDNISDEKYHQFQLDGNLQYKCPTCRGECYQVKNPEDAAREIW 350

Query: 357 RRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVD 416
           RR+++A++DLIASLRAAAGLPT++EIFSISP+SDDE++GP+ LK+E  RS K SLK + +
Sbjct: 351 RRRNIAERDLIASLRAAAGLPTQEEIFSISPFSDDEDSGPLKLKSESARSFKFSLKNLAN 410

Query: 417 KSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDV---HSYGNSFGDDTQS 473
            SPKK         +KK  +KK  Q+ + SK +   S EG+ D+   HS  +   DD QS
Sbjct: 411 DSPKKKSS------SKKTAKKKDSQLFMTSKIDTHNSCEGHSDIKSLHSLDDDKNDDIQS 464

Query: 474 PKNEGLDIPSS-VAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPH 531
            +NEG D+ SS  AG +S TE    I QPGILK K+VDEVMVSD+++  R V+ K++K  
Sbjct: 465 QRNEGPDVYSSPAAGSLSQTEASFPIDQPGILKQKFVDEVMVSDEERKPRVVRIKSNKAL 524

Query: 532 DLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDP 591
             DS E+ GKH  K++ +K KKLVINLGARKINV +SPRSD SSCQ++QD  T N     
Sbjct: 525 IPDSEEESGKHSLKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDPVTVN----- 579

Query: 592 SLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTK 651
                                 G++VD S QS+  +++GR GN+IK G+V+ +VS+ N  
Sbjct: 580 ----------------------GNKVD-SGQSKIFRVSGREGNLIKLGKVKPDVSEFNLT 616

Query: 652 VSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRES--- 708
             RG+ +D            K +ID     +++VG  A  RG+R  L  +   S ++   
Sbjct: 617 SGRGNMSDGRI---------KHSID---GMINQVGIKAPSRGERTYLGKQSEGSSDAYET 664

Query: 709 --NDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFT 766
             N++ +   SLPKDSKP LR KF+KP++E+QNS  SQ EEEK  IKGQRSKRKRPSPF 
Sbjct: 665 DDNNNRTPSHSLPKDSKPLLRFKFKKPSIESQNS--SQQEEEKMTIKGQRSKRKRPSPFK 722

Query: 767 EKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDT 826
           EKT FNE E  +QS QDS M  IMDANWIL KLG DAIGKRVEVHQ SDNSWHKGVVTD 
Sbjct: 723 EKTTFNESEGVSQSRQDSAMDGIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDV 782

Query: 827 VEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS 862
           VEGTS L + LDD +VK +EL KQGVRFVPQKQKRS
Sbjct: 783 VEGTSKLYVALDDGKVKNVELRKQGVRFVPQKQKRS 818

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833588|ref|XP_002884676.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330516|gb|EFH60935.1| protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/872 (57%), Positives = 594/872 (68%), Gaps = 102/872 (11%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+RIC C+LGF R ++ + A+ +F+ +V  VEEFLKDP    +V  +  T
Sbjct: 1   MAFHVACPITCRRICNCSLGFSRDLRGANAKEEFLKEVNRVEEFLKDPCVSSKVF-DGGT 59

Query: 61  VQVLVPEVPQPPPPAVAVV---DGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDY 117
           VQV VP+V  P P  V+++   DGA     +E A   SAQ KRVALQR+AA  + AAEDY
Sbjct: 60  VQVRVPKVV-PAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDY 118

Query: 118 ARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRN 177
           ARRFESG     S D AGEE   S  N+MCR+CF+GE EG ERARRMLSCK+CGKKYH+N
Sbjct: 119 ARRFESGVNDLTSNDHAGEEVVHSGMNIMCRMCFLGEGEGSERARRMLSCKTCGKKYHKN 178

Query: 178 CLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVS 237
           CLK+WAQ+RDLFHWSSW CPSCR+CE+CRRTGDPNKFMFC+RCDAAYHCYCQHPPHKNVS
Sbjct: 179 CLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVS 238

Query: 238 SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 297
           SGPYLCPKHT+CHSC S VPGNGLSVRWFL YTCCDACGRLFVKGNYCPVCLKVYRDSES
Sbjct: 239 SGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSES 298

Query: 298 TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWR 357
           TPMVCCD+CQRWVHC CDGISD+KYLQFQVDG LQY+C TCRGECYQV+DL+DAV+ELW+
Sbjct: 299 TPMVCCDICQRWVHCHCDGISDDKYLQFQVDGKLQYKCATCRGECYQVKDLQDAVQELWK 358

Query: 358 RKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDK 417
           +KD+ DK+LIASLRAAAGLPT++EIFSI P+SDD+ENGPV      GRSLK S+KG+V+K
Sbjct: 359 KKDVVDKELIASLRAAAGLPTDEEIFSIFPFSDDDENGPVS-----GRSLKFSIKGLVEK 413

Query: 418 SPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNE 477
           SPKK KE+GK  L+KK+  KKG    L    EP+   E   +    G    D+     NE
Sbjct: 414 SPKKSKEYGKHSLSKKHASKKGSHTKL----EPELHQEVGSERLRLGGVRIDNVGFQINE 469

Query: 478 GLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSG 536
             D+ SSVAGI       CS  +P I+KHK VD+VMV+D++K SR V+ K SKPHD DS 
Sbjct: 470 QSDVNSSVAGI-------CSTHEPKIVKHKRVDDVMVTDEEKPSRIVRIKCSKPHDSDS- 521

Query: 537 EDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRM 596
           ED  ++  + K++KAKKLVINLGARKINV+ S +S+  S                     
Sbjct: 522 EDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVS--------------------- 560

Query: 597 NSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGS 656
                L R    S LG GD+VD + + R LKI+GR      FG+ + E S          
Sbjct: 561 ----HLSRDKDQSTLG-GDKVDQTGEVRTLKISGR------FGKTQSEGS---------- 599

Query: 657 SADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVLQ 716
                                            A  G   Q  +  +     +D TS+  
Sbjct: 600 --------------------------------KATFGSITQFPASTSEGNHVDDKTSISP 627

Query: 717 SLPKDSKPPLRLKFRKPNLENQNSQV-SQPEEEK-SLIKGQRSKRKRPSPFTEKTLFNED 774
           +L K+++P L+ K RKPN  +Q S V +Q E+EK S  KGQRSKRKRPS   +     ED
Sbjct: 628 ALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRSKRKRPSSLVDMASLKED 687

Query: 775 EDA-AQSNQDSLMS-EIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTST 832
            +A   S+QDS  + E+MDANWILKKLGKD+IGKRVEVH  S NSWHKG VTD    TST
Sbjct: 688 GEATTHSHQDSSRNDEMMDANWILKKLGKDSIGKRVEVH-GSQNSWHKGTVTDVSGDTST 746

Query: 833 LSITLDDSRVKTLELGKQGVRFVPQKQKRSMS 864
           LS++LDD  +KT ELGK  VRF+PQKQKRS S
Sbjct: 747 LSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS 778

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736278|emb|CBI24916.3| unnamed protein product [Vitis vinifera]

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/665 (70%), Positives = 530/665 (79%), Gaps = 14/665 (2%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITCKRIC+CTLG+P  +QS +AR  F  +V  VE  LKDP    RV  E ST
Sbjct: 1   MAFHVACPITCKRICYCTLGYPHQLQSLRARAQFEEEVARVEALLKDPW-LIRVP-ERST 58

Query: 61  VQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARR 120
           VQV VP+V  PP     V         E     +SAQTKR A+QRKAAA  + AEDYARR
Sbjct: 59  VQVAVPKVVAPPA-PAVVAVVGDGVGGEGEEMLLSAQTKRAAMQRKAAAVSMVAEDYARR 117

Query: 121 FESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLK 180
           FESG +   SKDI GEEQ QSN NVMCR+CF GE EG ERAR+ML C SCGKKYHR CLK
Sbjct: 118 FESGDLVDTSKDIVGEEQSQSNVNVMCRICFFGEMEGSERARKMLPCNSCGKKYHRLCLK 177

Query: 181 NWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGP 240
           +W+QNRDLFHWSSW CPSCRICE+CRR+GDPNKFMFCRRCD AYHCYCQ PPHKNVSSGP
Sbjct: 178 SWSQNRDLFHWSSWTCPSCRICEVCRRSGDPNKFMFCRRCDDAYHCYCQQPPHKNVSSGP 237

Query: 241 YLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPM 300
           YLCPKHT+CHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPM
Sbjct: 238 YLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPM 297

Query: 301 VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKD 360
           VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQY+C TCRGECYQV+DLEDAV+ELWRR+D
Sbjct: 298 VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYKCATCRGECYQVKDLEDAVQELWRRRD 357

Query: 361 MADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPK 420
            AD+DLIASLRA A LPT+DEIFSISPYSDDEENGPV LK+EFGRSLKLSLKG VDKSPK
Sbjct: 358 KADRDLIASLRAKARLPTQDEIFSISPYSDDEENGPVSLKSEFGRSLKLSLKGSVDKSPK 417

Query: 421 KVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDT--QSPKNEG 478
           K KE+GK+  NKK  +KKG+Q PL SK E  QSFEG+ D   +  S GDD   Q  +++G
Sbjct: 418 KTKEYGKQSSNKKNVKKKGHQTPLISKKESHQSFEGHDDAQPFEYSLGDDKNEQPNRSDG 477

Query: 479 LDIPSS-VAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRV-KFKTSKPHDLDSG 536
             + SS VAG +SHTEG+CSI+QPG+LKHK+VDE+ V+++D+ SRV + K++KPH  D G
Sbjct: 478 RGVFSSPVAGSLSHTEGICSINQPGVLKHKFVDEIAVNNEDRTSRVIQIKSNKPHGSDVG 537

Query: 537 EDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRM 596
           ED GK  SKSKT+K  KLVI+LGAR  NVTNSPRSDASSCQREQDLTTSNG ED S QRM
Sbjct: 538 EDTGKQASKSKTMKGTKLVIHLGARNRNVTNSPRSDASSCQREQDLTTSNGSEDTSQQRM 597

Query: 597 NSKFVLDRHDGSSKLGD--GDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSR 654
                 D+HD  +K GD  GD++D+S Q++G K  GR GN+IK G+VR E S+ N K  R
Sbjct: 598 G-----DKHDRIAKFGDSKGDKIDYSGQAKGSKHGGREGNLIKLGKVRTEPSEMNPKFGR 652

Query: 655 GSSAD 659
           G+  D
Sbjct: 653 GNKDD 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338256|ref|NP_187459.2| PHD finger-containing protein [Arabidopsis thaliana] gi|110739634|dbj|BAF01725.1| hypothetical protein [Arabidopsis thaliana] gi|110741394|dbj|BAF02246.1| hypothetical protein [Arabidopsis thaliana] gi|332641110|gb|AEE74631.1| PHD finger-containing protein [Arabidopsis thaliana]

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/873 (56%), Positives = 591/873 (67%), Gaps = 103/873 (11%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+RIC C+LGF R ++ + A++ F+ +V+ VEEFLKDP     V     T
Sbjct: 1   MAFHVACPITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFLKDPAVSSNVFIG-GT 59

Query: 61  VQVLVPEVPQPPPPAVAVV---DGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDY 117
           VQV VP+V  P P  V+++   DGA     +E A   SAQ KRVALQR+AA  + AAEDY
Sbjct: 60  VQVRVPKVV-PAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDY 118

Query: 118 ARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRN 177
           ARRFESG     S D AGEE G S  N+MCR+CF+GE EG +RARRMLSCK CGKKYH+N
Sbjct: 119 ARRFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKN 178

Query: 178 CLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVS 237
           CLK+WAQ+RDLFHWSSW CPSCR+CE+CRRTGDPNKFMFC+RCDAAYHCYCQHPPHKNVS
Sbjct: 179 CLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVS 238

Query: 238 SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 297
           SGPYLCPKHT+CHSC S VPGNGLSVRWFL YTCCDACGRLFVKGNYCPVCLKVYRDSES
Sbjct: 239 SGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSES 298

Query: 298 TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWR 357
           TPMVCCD+CQRWVHC CDGISD+KY+QFQVDG LQY+C TCRGECYQV+DL+DAV+ELW+
Sbjct: 299 TPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCATCRGECYQVKDLQDAVQELWK 358

Query: 358 RKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDK 417
           +KD+ DK+LIASLRAAAGLPTE+EIFSI P+SDDEENGPV      GRSLK S+KG+V+K
Sbjct: 359 KKDVVDKELIASLRAAAGLPTEEEIFSIFPFSDDEENGPVS-----GRSLKFSIKGLVEK 413

Query: 418 SPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNE 477
           SPKK KE+G         +K   +   ++K EP+   E   +    G    D+     NE
Sbjct: 414 SPKKSKEYG----KHSSSKKHASKKGSHTKLEPEVHQEIGSERRRLGGVRIDNVGFQINE 469

Query: 478 GLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSG 536
             D+ SSVAGI       CS  +P I+KHK VD+VMV+D++K SR V+ K SKPHD DS 
Sbjct: 470 QSDVNSSVAGI-------CSTHEPKIVKHKRVDDVMVTDEEKPSRIVRIKCSKPHDSDS- 521

Query: 537 EDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRM 596
           ED  ++  + K++KAKKLVINLGARKINV+ S +S+  S                     
Sbjct: 522 EDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVS--------------------- 560

Query: 597 NSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSN-TKVSRG 655
                L R    S LG GD+VD + + R LKI+GR      FG+ + E S +    V++ 
Sbjct: 561 ----HLSRDKDQSTLG-GDKVDQTGEVRTLKISGR------FGKTQSEGSKATFGSVTQF 609

Query: 656 SSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVL 715
            +A   E  H+                                          +D TS+ 
Sbjct: 610 PAASTSEGNHV------------------------------------------DDKTSIS 627

Query: 716 QSLPKDSKPPLRLKFRKPNLENQNSQV-SQPEEEK-SLIKGQRSKRKRPSPFTEKTLFNE 773
            +L K+++P L+ K RKPN  +Q S V +Q E+EK S  KGQRSKRKRPS   +     E
Sbjct: 628 PALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRSKRKRPSSLVDMASLKE 687

Query: 774 DEDA-AQSNQD-SLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTS 831
           D +A   S+QD S   E+MDANWILKKLGKD+IGKRVEVH  S NSW KG VTD    TS
Sbjct: 688 DGEATTHSHQDNSRNDEMMDANWILKKLGKDSIGKRVEVH-GSQNSWRKGTVTDVSGDTS 746

Query: 832 TLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS 864
           TLS++LDD  +KT ELGK  VRF+PQKQKRS S
Sbjct: 747 TLSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS 779

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6648214|gb|AAF21212.1|AC013483_36 unknown protein [Arabidopsis thaliana]

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/873 (55%), Positives = 577/873 (66%), Gaps = 118/873 (13%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+RIC C+LGF R ++ + A++ F+ +V+ VEEFLKDP     V     T
Sbjct: 1   MAFHVACPITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFLKDPAVSSNVFIG-GT 59

Query: 61  VQVLVPEVPQPPPPAVAVV---DGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDY 117
           VQV VP+V  P P  V+++   DGA     +E A   SAQ KRVALQR+AA  + AAEDY
Sbjct: 60  VQVRVPKVV-PAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDY 118

Query: 118 ARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRN 177
           ARRFESG     S D AGEE G S  N+MCR+CF+GE EG +RARRMLSCK CGKKYH+N
Sbjct: 119 ARRFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKN 178

Query: 178 CLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVS 237
           CLK+WAQ+RDLFHWSSW CPSCR+CE+CRRTGDPNKFMFC+RCDAAYHCYCQHPPHKNVS
Sbjct: 179 CLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVS 238

Query: 238 SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 297
           SGPYLCPKHT+CHSC S VPGNGLSVRWFL YTCCDACGRLFVKGNYCPVCLKVYRDSES
Sbjct: 239 SGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSES 298

Query: 298 TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWR 357
           TPMVCCD+CQRWVHC CDGISD+KY+QFQVDG LQY+C TCRGECYQV+DL+DAV+ELW+
Sbjct: 299 TPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCATCRGECYQVKDLQDAVQELWK 358

Query: 358 RKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDK 417
           +KD+ DK+LIASLRAAA               DDEENGPV      GRSLK S+KG+V+K
Sbjct: 359 KKDVVDKELIASLRAAA---------------DDEENGPVS-----GRSLKFSIKGLVEK 398

Query: 418 SPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYGNSFGDDTQSPKNE 477
           SPKK KE+G         +K   +   ++K EP+   E   +    G    D+     NE
Sbjct: 399 SPKKSKEYG----KHSSSKKHASKKGSHTKLEPEVHQEIGSERRRLGGVRIDNVGFQINE 454

Query: 478 GLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSG 536
             D+ SSVAGI       CS  +P I+KHK VD+VMV+D++K SR V+ K SKPHD DS 
Sbjct: 455 QSDVNSSVAGI-------CSTHEPKIVKHKRVDDVMVTDEEKPSRIVRIKCSKPHDSDS- 506

Query: 537 EDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRM 596
           ED  ++  + K++KAKKLVINLGARKINV+ S +S+  S                     
Sbjct: 507 EDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVS--------------------- 545

Query: 597 NSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSN-TKVSRG 655
                L R    S LG GD+VD + + R LKI+GR      FG+ + E S +    V++ 
Sbjct: 546 ----HLSRDKDQSTLG-GDKVDQTGEVRTLKISGR------FGKTQSEGSKATFGSVTQF 594

Query: 656 SSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESNDDTSVL 715
            +A   E  H+                                          +D TS+ 
Sbjct: 595 PAASTSEGNHV------------------------------------------DDKTSIS 612

Query: 716 QSLPKDSKPPLRLKFRKPNLENQNSQV-SQPEEEK-SLIKGQRSKRKRPSPFTEKTLFNE 773
            +L K+++P L+ K RKPN  +Q S V +Q E+EK S  KGQRSKRKRPS   +     E
Sbjct: 613 PALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRSKRKRPSSLVDMASLKE 672

Query: 774 DEDA-AQSNQD-SLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTS 831
           D +A   S+QD S   E+MDANWILKKLGKD+IGKRVEVH  S NSW KG VTD    TS
Sbjct: 673 DGEATTHSHQDNSRNDEMMDANWILKKLGKDSIGKRVEVH-GSQNSWRKGTVTDVSGDTS 731

Query: 832 TLSITLDDSRVKTLELGKQGVRFVPQKQKRSMS 864
           TLS++LDD  +KT ELGK  VRF+PQKQKRS S
Sbjct: 732 TLSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS 764

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916644|gb|AFW56576.1| RING/FYVE/PHD-type zinc finger family protein [Zea mays]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/894 (44%), Positives = 511/894 (57%), Gaps = 113/894 (12%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVL----VEEFLKDP-LGR--FR 53
           MAFHVACPITC+R+C C LGF  S                    +E+FL DP L R    
Sbjct: 1   MAFHVACPITCRRVCDCELGFGASASRKGGGGALAAVWAGTAAALEDFLADPWLLRPAGA 60

Query: 54  VSKEESTVQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVA 113
           V  + +TVQV VP  P  P P          D  +EA  A             A     A
Sbjct: 61  VDADAATVQVEVP--PLEPAPE---------DGEDEARRA------------AAQRGAAA 97

Query: 114 AEDYARRFESGYVATASKDIAGEE-------QGQSNTNVMCRLCFVGENEGCERARRMLS 166
           AED ARRFESG  A  S +  G+E       QG +   VMCRLCF GENEG  +A +ML 
Sbjct: 98  AEDLARRFESG--AYGSPEAEGDEDEWDREDQGNAAVKVMCRLCFSGENEGSTKAAKMLP 155

Query: 167 CKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHC 226
           CK C K+YHRNCLK+W ++RDLFHWSSW CPSCR CE+CRR GDPNK MFC+RCD  YHC
Sbjct: 156 CKLCSKRYHRNCLKSWGEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKRCDDPYHC 215

Query: 227 YCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCP 286
           YCQ P HKNV+ GPYLCPKHT+CHSCGS VPG+G S RWFLGYTCCDACGRLFVKGNYCP
Sbjct: 216 YCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGNYCP 275

Query: 287 VCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVR 346
           VCLKVYRDSE  PMVCCDVC++WVH +CDGIS+EKY QFQ D NLQY C  CRGEC Q+R
Sbjct: 276 VCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQADQNLQYTCAACRGECSQIR 335

Query: 347 DLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRS 406
           D EDA+RELW+R+D+AD +L+ +LRAAA LP+ +++  + P SDDE+ G  VLK+E   +
Sbjct: 336 DTEDAIRELWKRRDVADHELMITLRAAAKLPSLEDVSPLYPNSDDEKLGAYVLKSESRNT 395

Query: 407 LKLSLKGVVDKSPKKVKEHGKKWL-----NKKYPRKKGYQMPLNSKPEPDQSFEGYHDVH 461
           LK SLK    K P    E  K        NKK  +KKG Q    +    +   E  HDV 
Sbjct: 396 LKFSLKSNSSKPPPDTPEQEKVVFKSSGSNKKPSKKKGGQGNKTNDGHDEIFLERRHDVK 455

Query: 462 SYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKIS 521
           S  +  GD +    ++     +     +S +    + S    LK   +  V  ++ D I 
Sbjct: 456 SSNSRLGDQSIDGNHDMSPFKNDDNAYISSS----TRSSEKNLKSPSMKAV-TNNADMIP 510

Query: 522 RVKFKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQD 581
           +VK K SK   L   +D  ++ SK+ T KA KLVI+LG+R    + SP+S+ S+ QREQD
Sbjct: 511 KVKIKGSKVSSLHY-KDGEENTSKADTGKATKLVIHLGSRHKTRSGSPKSELSNYQREQD 569

Query: 582 LTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRV 641
           L + +                           G ++D +SQ +G +   +  +V+K  R 
Sbjct: 570 LGSIH---------------------------GRKLDVTSQLKGSRSEVKERSVMKLVR- 601

Query: 642 RQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESR 701
              V   N+ +    ++ +H        +GK    RS A +S         G+     +R
Sbjct: 602 ETGVQQRNSLLGDLGTSKKH-------ATGK----RSNALIS-----GMENGNETGTRNR 645

Query: 702 PNASRESN----DDTSVLQSLPKDSKPP-LRLKFRKPNLENQNSQVSQPEEEKSLI---- 752
           P A ++S+    D+       P + KP  L+LKF++P+ E  N+Q SQPEE  S +    
Sbjct: 646 PFAQKQSHSSQVDENQGTADSPDNLKPSLLKLKFKRPHYEQLNTQASQPEEPTSWVSQQE 705

Query: 753 ------KGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGK 806
                 KGQRSKRKRPS   EK    +    A+ +  S   E+MDANWIL+KLGKDAIGK
Sbjct: 706 DQFNVAKGQRSKRKRPS--MEKADGLDGTTPAKRHHQSTDDEVMDANWILRKLGKDAIGK 763

Query: 807 RVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQK 860
           R+EVH  SD  WH+G+V++ + G  TL I LD+ R + +ELGKQ +R +  + K
Sbjct: 764 RIEVHLTSDGKWHQGMVSNVMGG--TLCIQLDNGRSENVELGKQAIRLIASRSK 815

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357151790|ref|XP_003575905.1| PREDICTED: uncharacterized protein LOC100821635 [Brachypodium distachyon]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 377/886 (42%), Positives = 501/886 (56%), Gaps = 107/886 (12%)

Query: 1   MAFHVACPITCKRICFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRVSKEEST 60
           MAFHVACPITC+R+C C LGF  +         +      +E FL DP    R ++    
Sbjct: 1   MAFHVACPITCRRLCDCELGFGAARGKEAKAGVWADAAAALEGFLADPW-LLRPAEAGDG 59

Query: 61  VQVLVPEVPQPPPPAVAVVDGAGLDAAEEAAAAVSAQTKRVALQRKAAAAMVAAEDYARR 120
           V V   +V  PP P            AEEA        +  A +        AAED+ARR
Sbjct: 60  VAVGTVQVEVPPLPL-----------AEEA--------EDEAHRAAMQRQAAAAEDFARR 100

Query: 121 FESGY---VATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRN 177
            E  Y    A    D + +E+G +   VMCRLC  GENEG  +A +ML CK C KKYH+ 
Sbjct: 101 LEGSYGFPEAEGDDDDSDQEEGNAAIKVMCRLCISGENEGSSKAAKMLPCKLCNKKYHKK 160

Query: 178 CLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVS 237
           C+K W ++RDLFHWSSW CPSCR CE+CRR GDPNK MFC+RCD AYHCYCQ P HKNVS
Sbjct: 161 CVKYWGEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQQPSHKNVS 220

Query: 238 SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 297
            GPYLCPKHT+CHSCGS VPG+G S RWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE 
Sbjct: 221 HGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEV 280

Query: 298 TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWR 357
            PMVCCDVC++WVH +CDGIS+EKY QFQ D NLQY C +CRGEC Q+RD EDAVRELW+
Sbjct: 281 IPMVCCDVCEKWVHIECDGISEEKYQQFQADENLQYTCASCRGECSQIRDAEDAVRELWK 340

Query: 358 RKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDK 417
           R+++ D DL+ SLRAAA LP+ +++   +P SDDE  G  V KN+   +LK S K    K
Sbjct: 341 RRNIVDHDLMVSLRAAAALPSLEDVSPSNPNSDDERLGAFVPKNDGRNTLKFSFKSNSSK 400

Query: 418 SPKKVKEHGKK-------WLNKKYPRKKGYQMPLNSKPEPDQSF-EGYHDVHSYGNSFGD 469
            P  + + G++         NKK+ +KKG Q  + S  +PD+ F E  H+  SY N  G 
Sbjct: 401 PP--LDQSGQEKNVPKTSGSNKKHSKKKGNQGNI-SVGDPDEIFLEKRHEAKSYSNLGGH 457

Query: 470 DTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISRVKFKTSK 529
             +   N G          + + + V ++S       +  ++   ++ D I +VK + SK
Sbjct: 458 TIEG--NHG-------QSTIKNDDSVFTLSAT-----RSSEKGAANNADMIPKVKIRGSK 503

Query: 530 PHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIE 589
              L   +    + +KS   K  KLV + G R  + + SP+S+ ++  +EQ+L + +G  
Sbjct: 504 APSLHFKDVGEVNTAKSDAGKGTKLVFHFGTRHKSGSGSPKSEMTNSHKEQELGSLHG-- 561

Query: 590 DPSLQRMNSKFVLDRHDGSSKLGDGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSN 649
                                     ++D +SQ +  K   +  +V+K  R    V   N
Sbjct: 562 -------------------------GKIDVTSQFKSSKSEKKEKSVMKLVR-ETGVQQRN 595

Query: 650 TKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLESRPNASRESN 709
           + +    ++ +H       ++GKR    S A +S + E A   G R +      +     
Sbjct: 596 SLLGDLGTSKKH-------VTGKR----SNAIISGM-ENAGESGTRSRSFGHKQSIPNQL 643

Query: 710 DDTSVLQSLPKDSKPP------LRLKFRKPNLENQNSQVSQPEE---------EKSLIKG 754
            D     SLP ++ P       L+LKF++P+ E  ++QV+QPEE         E ++ KG
Sbjct: 644 TDNQATASLPVNNSPDSLKPSLLKLKFKRPHFEQPSAQVAQPEETATWASQQEELNVAKG 703

Query: 755 QRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKLGKDAIGKRVEVHQQS 814
           QRSKRKRPS   +K   +E +   + +Q S   E MDA WIL+KLGKDAIGKR+E+   S
Sbjct: 704 QRSKRKRPS--MDKMDGSEGKTPGKRHQQSTGDEAMDATWILRKLGKDAIGKRIEIQLPS 761

Query: 815 DNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQK 860
           D  WH+GVV++ + G  TL + LDD   + LELGKQ VR V Q+ K
Sbjct: 762 DGKWHQGVVSNVLSG--TLCVQLDDGSSENLELGKQAVRLVAQRSK 805

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	864
TAIR|locus:2077457	779	AT3G08020 [Arabidopsis thalian	0.701	0.777	0.554	2.8e-198
TAIR|locus:2083715	696	AT3G52100 [Arabidopsis thalian	0.281	0.349	0.766	1.9e-175
UNIPROTKB|H7BYJ6	366	MLL "MLL cleavage product C180	0.209	0.494	0.331	8.6e-29
UNIPROTKB|E1BKN0	2711	LOC785776 "Uncharacterized pro	0.217	0.069	0.326	9.3e-26
MGI|MGI:109565	2713	Wbp7 "WW domain binding protei	0.217	0.069	0.321	1.5e-25
UNIPROTKB|Q9UMN6	2715	WBP7 "Histone-lysine N-methylt	0.217	0.069	0.321	2e-25
UNIPROTKB|J9NZ02	2194	RBM42 "Uncharacterized protein	0.217	0.085	0.316	4.1e-25
RGD|1308331	2705	Mll4 "myeloid/lymphoid or mixe	0.217	0.069	0.321	4.1e-25
UNIPROTKB|F1PTZ8	2728	RBM42 "Uncharacterized protein	0.217	0.068	0.316	5.3e-25
DICTYBASE|DDB_G0282427	795	DDB_G0282427 "HMG1/2 (high mob	0.197	0.215	0.335	7.9e-25

TAIR|locus:2077457 AT3G08020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1764 (626.0 bits), Expect = 2.8e-198, Sum P(2) = 2.8e-198
 Identities = 356/642 (55%), Positives = 443/642 (69%)

Query:    97 QTKRVXXXXXXXXXXXXXXXXXRRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENE 156
             Q KRV                 RRFESG     S D AGEE G S  N+MCR+CF+GE E
Sbjct:    98 QKKRVALQRQAAVTVEAAEDYARRFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGE 157

Query:   157 GCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMF 216
             G +RARRMLSCK CGKKYH+NCLK+WAQ+RDLFHWSSW CPSCR+CE+CRRTGDPNKFMF
Sbjct:   158 GSDRARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMF 217

Query:   217 CRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACG 276
             C+RCDAAYHCYCQHPPHKNVSSGPYLCPKHT+CHSC S VPGNGLSVRWFL YTCCDACG
Sbjct:   218 CKRCDAAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACG 277

Query:   277 RLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP 336
             RLFVKGNYCPVCLKVYRDSESTPMVCCD+CQRWVHC CDGISD+KY+QFQVDG LQY+C 
Sbjct:   278 RLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCA 337

Query:   337 TCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFSISPYSDDEENGP 396
             TCRGECYQV+DL+DAV+ELW++KD+ DK+LIASLRAAAGLPTE+EIFSI P+SDDEENGP
Sbjct:   338 TCRGECYQVKDLQDAVQELWKKKDVVDKELIASLRAAAGLPTEEEIFSIFPFSDDEENGP 397

Query:   397 VVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEG 456
             V      GRSLK S+KG+V+KSPKK KE+GK   +KK+  KKG     ++K EP+   E 
Sbjct:   398 VS-----GRSLKFSIKGLVEKSPKKSKEYGKHSSSKKHASKKGS----HTKLEPEVHQEI 448

Query:   457 YHDVHSYGNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSD 516
               +    G    D+     NE  D+ SSVAGI       CS  +P I+KHK VD+VMV+D
Sbjct:   449 GSERRRLGGVRIDNVGFQINEQSDVNSSVAGI-------CSTHEPKIVKHKRVDDVMVTD 501

Query:   517 DDKISR-VKFKTSKPHDLDSGEDDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDA-S 574
             ++K SR V+ K SKPHD DS ED  ++  + K++KAKKLVINLGARKINV+ S +S+  S
Sbjct:   502 EEKPSRIVRIKCSKPHDSDS-EDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVS 560

Query:   575 SCQREQDLTTSNGIE-DPSLQ----RMNSKFVLDRHDGS-SKLGDGDRVDHSSQSRGLKI 628
                R++D +T  G + D + +    +++ +F   + +GS +  G   +   +S S G  +
Sbjct:   561 HLSRDKDQSTLGGDKVDQTGEVRTLKISGRFGKTQSEGSKATFGSVTQFPAASTSEGNHV 620

Query:   629 AGRGG---NVIKFGR--VRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVS 683
               +      + K  R  ++ ++   N+     S   + E E +    G+R+    R   S
Sbjct:   621 DDKTSISPALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRS---KRKRPS 677

Query:   684 RVGEVAALRGDRKQL-ESRPNASR--ESNDDTSVLQSLPKDS 722
              + ++A+L+ D +    S  + SR  E  D   +L+ L KDS
Sbjct:   678 SLVDMASLKEDGEATTHSHQDNSRNDEMMDANWILKKLGKDS 719

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2083715 AT3G52100 [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 1.9e-175, Sum P(3) = 1.9e-175
 Identities = 187/244 (76%), Positives = 213/244 (87%)

Query:   131 KDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH 190
             KD+  E+    + ++ C +C++ E    ERA+ MLSCK CGKKYHRNC+K+WAQ+RDLF+
Sbjct:   146 KDLNEEDHDHHSASITCHMCYLVEVGKSERAK-MLSCKCCGKKYHRNCVKSWAQHRDLFN 204

Query:   191 WSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH 250
             WSSW CPSCRICE C   GDP KFMFC+RCD AYHC CQHP HKNVSSGPYLCPKHTKC+
Sbjct:   205 WSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCY 264

Query:   251 SCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWV 310
             SC S VPGNG S+RWFLG+TCCDACGRLFVKGNYCPVCLKVYRDSE+TPMVCCD CQRWV
Sbjct:   265 SCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWV 324

Query:   311 HCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASL 370
             HCQCDGISDEKY+QFQVDGNLQY+C TCRGE YQV+DLEDAV+E+W+RKDMADKDLIASL
Sbjct:   325 HCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASL 384

Query:   371 RAAA 374
             +A+A
Sbjct:   385 KASA 388

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|H7BYJ6 MLL "MLL cleavage product C180" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 8.6e-29, P = 8.6e-29
 Identities = 64/193 (33%), Positives = 97/193 (50%)

Query:   156 EGCERAR---RMLSCKSCGKKYHRNCLKNWAQNRDLF-HWSSWKCPSCRICEICRRTGDP 211
             +G  R R   + + C+ C + +H+ CL+     R L     +W C  C+ C +C R    
Sbjct:   146 DGVHRIRVDFKFVYCQVCCEPFHKFCLEE--NERPLEDQLENWCCRRCKFCHVCGRQHQA 203

Query:   212 NKFMF-CRRCDAAYHCYCQHP--PHKNVSSGP-YLCPKHTKCHSCGSNVPGNGLSVRWFL 267
              K +  C +C  +YH  C  P  P K       ++C K  +C SCGS  PG G   +W  
Sbjct:   204 TKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSH 263

Query:   268 GYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKY-LQF 325
              ++ C  C +LF KGN+CP+C K Y D +  + M+ C  C RWVH +C+ +SDE Y +  
Sbjct:   264 DFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILS 323

Query:   326 QVDGNLQYRCPTC 338
              +  ++ Y C  C
Sbjct:   324 NLPESVAYTCVNC 336

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BKN0 LOC785776 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 9.3e-26, P = 9.3e-26
 Identities = 66/202 (32%), Positives = 103/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:  1197 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPLPQHHDTWCCRRCKFCHV 1249

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:  1250 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRKRRHWICSACVRCKSCGAT-PGKN 1308

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C +LF KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:  1309 WDVEWSGDYSLCPRCTQLFEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 1368

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:  1369 EDYEILSGLPDSVLYTCGPCAG 1390

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0016458 "gene silencing" evidence=IEA

GO:0009994 "oocyte differentiation" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:109565 Wbp7 "WW domain binding protein 7" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 65/202 (32%), Positives = 102/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:  1208 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPSPQHRDTWCCRRCKFCHV 1260

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:  1261 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRRRRHWICSACVRCKSCGAT-PGKN 1319

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C  L+ KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:  1320 WDVEWSGDYSLCPRCTELYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 1379

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:  1380 EDYEILSGLPDSVLYTCGPCAG 1401

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009994 "oocyte differentiation" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0030728 "ovulation" evidence=IMP

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IMP

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

UNIPROTKB|Q9UMN6 WBP7 "Histone-lysine N-methyltransferase MLL4" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 65/202 (32%), Positives = 103/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:  1202 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPLPQHHDTWCCRRCKFCHV 1254

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:  1255 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRKRRHWICSACVRCKSCGAT-PGKN 1313

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C +L+ KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:  1314 WDVEWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 1373

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:  1374 EDYEILSGLPDSVLYTCGPCAG 1395

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0009994 "oocyte differentiation" evidence=IEA

GO:0016458 "gene silencing" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0051568 "histone H3-K4 methylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J9NZ02 RBM42 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 64/202 (31%), Positives = 103/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:   680 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPLPQHHDTWCCRRCKFCHV 732

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:   733 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRKRRHWICSACVRCKSCGAT-PGKN 791

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C +L+ KGN+CP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:   792 WDVEWSGDYSLCPRCTQLYEKGNFCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 851

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:   852 EDYEILSGLPDSVLYTCGPCAG 873

GO:0005634 "nucleus" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1308331 Mll4 "myeloid/lymphoid or mixed-lineage leukemia 4" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 65/202 (32%), Positives = 102/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:  1201 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPLPQHRDTWCCRRCKFCHV 1253

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:  1254 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRRRRHWICSACVRCKSCGAT-PGKN 1312

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C  L+ KGNYCP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:  1313 WDVEWSGDYSLCPRCTELYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 1372

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:  1373 EDYEILSGLPDSVLYTCGPCAG 1394

GO:0001541 "ovarian follicle development" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009994 "oocyte differentiation" evidence=ISO

GO:0016458 "gene silencing" evidence=ISO

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0030728 "ovulation" evidence=ISO

GO:0034968 "histone lysine methylation" evidence=ISO

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0051569 "regulation of histone H3-K4 methylation" evidence=ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

UNIPROTKB|F1PTZ8 RBM42 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 5.3e-25, P = 5.3e-25
 Identities = 64/202 (31%), Positives = 103/202 (50%)

Query:   145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
             ++C LC    ++G      ++ C+ C   +H  CL+  A+     H  +W C  C+ C +
Sbjct:  1214 MVCLLC---ASKGLHE---LVFCQVCCDPFHPFCLEE-AERPLPQHHDTWCCRRCKFCHV 1266

Query:   205 CRRTGDPNKFMF-CRRCDAAYHCYCQHPPHKNVSSGP---YLCPKHTKCHSCGSNVPGNG 260
             C R G  +K +  C RC  AYH  C  P +   ++     ++C    +C SCG+  PG  
Sbjct:  1267 CGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRKRRHWICSACVRCKSCGAT-PGKN 1325

Query:   261 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISD 319
               V W   Y+ C  C +L+ KGN+CP+C + Y D++  + M+ C  C  WVH +C+G+SD
Sbjct:  1326 WDVEWSGDYSLCPRCTQLYEKGNFCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSD 1385

Query:   320 EKY-LQFQVDGNLQYRCPTCRG 340
             E Y +   +  ++ Y C  C G
Sbjct:  1386 EDYEILSGLPDSVLYTCGPCAG 1407

GO:0005634 "nucleus" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE|DDB_G0282427 DDB_G0282427 "HMG1/2 (high mobility group) box-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 317 (116.6 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 61/182 (33%), Positives = 87/182 (47%)

Query:   164 MLSCKSCGKKYHRNCLKNWAQNRDLFHW--SSWKCPSCRICEICRRTGDPNKFMFCRRCD 221
             +++C SC KKYH  CL    +  D +    + WKC  C+ CE+C  +G   K +FC  CD
Sbjct:   578 LITCSSCSKKYHAKCLNLHQKCIDKYREDPTQWKCTDCKSCELCDDSGHDEKMLFCDVCD 637

Query:   222 AAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLS-VRWFLGYTCCDAC-GRLF 279
               YH +C  PP      G + C     C  C S V  N L+ ++W   YTCCD+C  + F
Sbjct:   638 KGYHTFCLTPPLSQTPEGGWRCNDCAFCIHCYSRVDKNSLNKIKWKENYTCCDSCFSKGF 697

Query:   280 V-KGNYCPVCLKVYRDS--ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP 336
               K  YCP+C    +D   E   +  C  C + VH  CD    +  +    + +  Y+CP
Sbjct:   698 SEKSKYCPICSHSIKDEGEEEDSITTCQYCHKSVHDHCD----QNIIDNLENEHFIYKCP 753

Query:   337 TC 338
              C
Sbjct:   754 NC 755

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	864
pfam00628	51	pfam00628, PHD, PHD-finger	7e-07
smart00249	47	smart00249, PHD, PHD zinc finger	2e-06
smart00249	47	smart00249, PHD, PHD zinc finger	3e-05
pfam00628	51	pfam00628, PHD, PHD-finger	4e-05

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP--HKNVSSGPYLCPKHTKCHSC 252
            C +C +  D  + + C  CD  +H  C  PP   + +  G + CP   +C   
Sbjct: 1   YCAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCP---ECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP-HKNVSSGPYLCPKH 246
            C +C +  D  + + C  CD  YH  C  PP  +    G + CPK 
Sbjct: 1   YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 338
           YC VC K     E   ++ CD C RW H  C G    +        + ++ CP C
Sbjct: 1   YCSVCGKPDDGGE---LLQCDGCDRWYHQTCLGPPLLEEEP-----DGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC VC KV  D E   ++ CD C RW H  C G   E           ++ CP C+
Sbjct: 1   YCAVCGKVDDDGE---LLLCDGCDRWFHLACLGPPLEPE----EIPEGEWYCPECK 49

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	864
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	100.0
KOG1244	336	consensus Predicted transcription factor Requiem/N	99.7
KOG1512	381	consensus PHD Zn-finger protein [General function	99.47
KOG0954	893	consensus PHD finger protein [General function pre	99.31
KOG0383	696	consensus Predicted helicase [General function pre	98.89
KOG4299	613	consensus PHD Zn-finger protein [General function	98.73
KOG4299	613	consensus PHD Zn-finger protein [General function	98.49
KOG0825	1134	consensus PHD Zn-finger protein [General function	98.43
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	98.37
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.34
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	98.34
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	98.28
KOG0956	900	consensus PHD finger protein AF10 [General functio	98.19
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.14
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.03
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	97.98
KOG0956	900	consensus PHD finger protein AF10 [General functio	97.98
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	97.92
KOG1512	381	consensus PHD Zn-finger protein [General function	97.91
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.88
KOG1244	336	consensus Predicted transcription factor Requiem/N	97.77
COG5141	669	PHD zinc finger-containing protein [General functi	97.69
KOG1973	274	consensus Chromatin remodeling protein, contains P	97.46
KOG0383	696	consensus Predicted helicase [General function pre	97.45
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	97.44
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.06
KOG1973	274	consensus Chromatin remodeling protein, contains P	96.86
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	96.68
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	96.65
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	96.65
KOG0957	707	consensus PHD finger protein [General function pre	96.58
KOG0954	893	consensus PHD finger protein [General function pre	96.53
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	96.51
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	96.44
KOG0957	707	consensus PHD finger protein [General function pre	96.42
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.32
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	96.12
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	95.96
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	95.55
COG5141	669	PHD zinc finger-containing protein [General functi	95.54
KOG1701	468	consensus Focal adhesion adaptor protein Paxillin	95.35
KOG2752	345	consensus Uncharacterized conserved protein, conta	95.16
smart00743	61	Agenet Tudor-like domain present in plant sequence	94.81
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	93.67
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	93.5
PF07227	446	DUF1423: Protein of unknown function (DUF1423); In	92.95
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	92.9
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	92.15
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	92.13
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	89.87
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	87.92
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.63
KOG1701	468	consensus Focal adhesion adaptor protein Paxillin	87.21
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	85.39
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	84.56
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	83.68
PF07227	446	DUF1423: Protein of unknown function (DUF1423); In	83.17
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	81.78
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	80.98

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=100.00  E-value=1.9e-75  Score=656.86  Aligned_cols=593  Identities=40%  Similarity=0.683  Sum_probs=498.3

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCCCC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA  222 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~r  222 (864)
                      ...+|.+|...|   .+....|+.|..|+..||++|+..+.....+  .+.|+|+.|++|..|+..+++.++++|+.|+.
T Consensus        17 ~~~mc~l~~s~G---~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l--~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDv   91 (694)
T KOG4443|consen   17 VCLMCPLCGSSG---KGRAGRLLACSDCGQKYHPYCVTSWAQHAVL--SGGWRCPSCRVCEACGTTGDPKKFLLCKRCDV   91 (694)
T ss_pred             hhhhhhhhcccc---ccccCcchhhhhhcccCCcchhhHHHhHHHh--cCCcccCCceeeeeccccCCcccccccccccc
Confidence            445777777655   4556689999999999999999998876544  35599999999999999999999999999999


Q ss_pred             cccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCcee
Q 002926          223 AYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVC  302 (864)
Q Consensus       223 aYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVq  302 (864)
                      .||.+|+.|++..++.+.|+|+.|+.|..|+.+.++  +..+|..+++.|..|..    ..|||+|.+.|++.+..+|++
T Consensus        92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg--~s~~~~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~  165 (694)
T KOG4443|consen   92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG--LSLDLQEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVC  165 (694)
T ss_pred             cccccccCCccccccCcccccHHHHhhhhccccccc--cchhhhccCcccccccc----cccCchHHHhhhhccchhhHH
Confidence            999999999999999999999999999999998877  67788889999999985    679999999999999999999


Q ss_pred             ccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCCcCCCChHHHHHHhhhhhhhhcHHHHHHHHHhcCCCCcccc
Q 002926          303 CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEI  382 (864)
Q Consensus       303 CD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~IK~~edai~r~Wr~re~~~~dliaslR~aqGLp~~EEi  382 (864)
                      |+.|.+|.|..|+++.++.|.++.++  +.|.|.+||.+++++|++.+++++.|.+....+..++..++++.-|...-. 
T Consensus       166 c~~c~rwsh~~c~~~sdd~~~q~~vD--~~~~CS~CR~es~qvKdi~~~vqe~~~~k~~~~~~~~~tls~~a~lq~~~~-  242 (694)
T KOG4443|consen  166 CSICQRWSHGGCDGISDDKYMQAQVD--LQYKCSTCRGESYQVKDISDALQETWKAKDKPDKILIATLSAQAALQMHHA-  242 (694)
T ss_pred             HHHhcccccCCCCccchHHHHHHhhh--hhcccceeehhhhhhhhHHHHHHhhcchhhccccceeehhhhhhhhhhccc-
Confidence            99999999999999999999998877  899999999999999999999999999999999999998888866533322 


Q ss_pred             ccCCCCCCcccCCcchhhhhhccccccccCCCCCCCCCchhhhhccccCccCCCccCCCCCCCCCCCCCCCCCCcccccc
Q 002926          383 FSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHS  462 (864)
Q Consensus       383 f~~~P~sdDe~~~p~~~~~~~~~~~~~s~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (864)
                                    +     +.++.+++.+++.++++.+++...+..+.+.+...+|..+     .+     ..+.|+.+
T Consensus       243 --------------~-----~~~s~~~k~~~~~~~~~~~s~a~gq~s~~~~~~~~~g~~~-----dp-----~~~~e~~s  293 (694)
T KOG4443|consen  243 --------------V-----IGDSSADKAGSSANSGSATSGASGQLSLTTANTPTLGVSL-----DP-----VKLQEVGS  293 (694)
T ss_pred             --------------c-----ccccccccccCcccCCcccccccccCCcccccccccCccc-----ch-----hhhhhccc
Confidence                          2     2566788889999999999999999999888888888777     22     45667777


Q ss_pred             cC----CCCCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCcccccccceeeccCCCccce-eEeecCCCCCCCCCC
Q 002926          463 YG----NSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSGE  537 (864)
Q Consensus       463 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  537 (864)
                      |+    ..+..+...+..       +...+.+..|++++-.-+-.+.+..+.+.||+.+|...| ++||++||+++++ +
T Consensus       294 E~~a~~~v~~e~vv~d~t-------~~~~~~~~~e~~~~p~~r~~~~~~m~~~~~vt~~e~~~r~~r~~Stk~~~~~~-~  365 (694)
T KOG4443|consen  294 ERKAKLLVKQEAVVKDST-------ETPTVNSRAEEIGTPEKRLNANATMTAINQVTSEEKPTRTARIKSTKPPDSDS-E  365 (694)
T ss_pred             hhhhhhccchhhhhhccc-------cCcccccchhhccCccccccccceeeeeeccccccccceeeecCCCCCCCcch-h
Confidence            77    345555555544       444556778999999999999999999999985554445 9999999999999 6


Q ss_pred             ccccccccccccceeeEEEeeccccccccCCCCCCCcchhcccccccCCCCCChhhhhccccccccccCCCCcCCCCCcc
Q 002926          538 DDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRV  617 (864)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (864)
                      +...+++...++++++||||+|+|+||+.++.+.++.+-.-+-+     +    ++..++                |+++
T Consensus       366 ~~~r~a~edn~ll~~~l~~n~st~kl~~~~~t~~~v~~~~~~a~-----l----~~~~l~----------------~~~~  420 (694)
T KOG4443|consen  366 NNLRSAAEDNALLAKKLVINSSSRKLNVISSTSAHVGSASSSAP-----L----SQRKLI----------------GVRA  420 (694)
T ss_pred             hhhhhccchhhHHhhhcccccCccccccccccccccccccccCh-----h----hHHHhc----------------cCcC
Confidence            88888999999999999999999999999999998874322211     1    222222                5888


Q ss_pred             ccccccccceecccCCceeeeccccccccccCcccCCCCCCCCCCccccccccccchhhhhhhhcccccceeEEecCccc
Q 002926          618 DHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQ  697 (864)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (864)
                      |-+++.|++..+         |+.+.-                                         +.++.++.++..
T Consensus       421 ~s~~k~rsle~e---------gs~~~~-----------------------------------------~~v~~~~~a~~s  450 (694)
T KOG4443|consen  421 PSMGKVRSLEDE---------GSRGVI-----------------------------------------GPVTTATAAAGS  450 (694)
T ss_pred             cchhhhhhhhhh---------cccCCC-----------------------------------------CCcCCcCccccc
Confidence            888888888662         222221                                         122333333322


Q ss_pred             cccCCCccccCCCCcccccCCCCCCCCceeeeecCCCccCCCCCcCchHH--HhhhhhcccccCCCCCccccccccccc-
Q 002926          698 LESRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEE--EKSLIKGQRSKRKRPSPFTEKTLFNED-  774 (864)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~k~~~~~~~~~~~~~~~~--~~~~~~gqrskrkr~~~~~~~~~~~~~-  774 (864)
                      .+.+.+..  ...+.+-+.+..++.+|+|+++|++|+.+.|+|..++..|  .+...+|+|+|+||+++..+++.++++ 
T Consensus       451 sgss~~~~--~s~t~g~~~s~~~~~~~~l~~a~a~~~s~~~~s~~~v~~~~E~~~d~~~a~~~n~~~n~~~~~~~~~~~~  528 (694)
T KOG4443|consen  451 SGSSGDVK--TSTTPGTVASGQKSQRPLLKSAIAKPNSAVQISEPGVGSEAEQKSDGKGARSKNKRQNQAPPPPPPPEDQ  528 (694)
T ss_pred             ccCCCCCC--CCCCCCcCCcchhhhhhhhhhhhhcCCcccccccccccccccccCCcccccccccccCCCCCCCCCcchh
Confidence            22222222  2233444668899999999999999999999987776655  559999999999999999999999999 


Q ss_pred             hhhhhhhhh-chhhhhhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCcccceecCcee
Q 002926          775 EDAAQSNQD-SLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGKQG  851 (864)
Q Consensus       775 ~~~~~~~~~-~~~~~~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~~~~~~~~~gk~~  851 (864)
                      |....+++| ++.||||||+|||++||+||+|||+|||-.++|+|.+|+|+.|+  .+||.|.|++|+|.++|+++|+|+
T Consensus       529 q~l~~s~~d~~~~d~~~~a~~~~~~~g~~~~~~~t~vhs~~~ns~~~g~vt~~~s~~~~s~~~~~~~~~~v~~~~~~~~~  608 (694)
T KOG4443|consen  529 QQLQPSPHDVSRLDEMVDAEWILKKLGKDAKTKRTEVHSKSMNSWPKGNVTIVISTGQTSPLEVQLKPGAVKTVELGKQG  608 (694)
T ss_pred             hhcCCCHHHHHHHHhhhccccccccCCCCCCcceeccccCCCCCCCCccceeeeccCCcccceeeccccccccccccccc
Confidence            999999999 79999999999999999999999999999999999999999998  899999999999999999999999


Q ss_pred             eEeeeccccccC
Q 002926          852 VRFVPQKQKRSM  863 (864)
Q Consensus       852 vr~~~~~~k~~~  863 (864)
                      |||+|++|||.+
T Consensus       609 v~f~pe~~k~~~  620 (694)
T KOG4443|consen  609 VRFLPEKQKRVR  620 (694)
T ss_pred             cccChhhhhccc
Confidence            999999999876

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=99.70  E-value=2.3e-18  Score=180.21  Aligned_cols=108  Identities=28%  Similarity=0.734  Sum_probs=98.8

Q ss_pred             CCccccccccccccc--ccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeec
Q 002926          140 QSNTNVMCRLCFVGE--NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFC  217 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG--~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~C  217 (864)
                      .+.+..+|.+|.+..  +.....+++|+.|..|+++-|+.||.....++..+..+.|+|.+|++|.+|+...+++.+|+|
T Consensus       220 ~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc  299 (336)
T KOG1244|consen  220 IAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC  299 (336)
T ss_pred             cccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence            456778999999765  455677889999999999999999999988888888999999999999999999999999999


Q ss_pred             CCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          218 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       218 d~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +.|+++||++||.|++...|.|.|.|..|.
T Consensus       300 ddcdrgyhmyclsppm~eppegswsc~KOG  329 (336)
T KOG1244|consen  300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCL  329 (336)
T ss_pred             cccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence            999999999999999999999999998875

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=99.47  E-value=9e-15  Score=154.30  Aligned_cols=101  Identities=22%  Similarity=0.527  Sum_probs=91.0

Q ss_pred             cccccccccccccc-cCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCC
Q 002926          142 NTNVMCRLCFVGEN-EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRC  220 (864)
Q Consensus       142 ~~dd~C~vC~~gG~-~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C  220 (864)
                      .....|.+|..+.. ......+.||+|..|-.+||++|+.++.+...+++.+.|.|.+|+.|.+|+.+..++.+++|+.|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~C  335 (381)
T KOG1512|consen  256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVC  335 (381)
T ss_pred             cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccc
Confidence            45668999998653 33456678999999999999999999998888888999999999999999999999999999999


Q ss_pred             CCcccccccCCCCcCCCCCCcccc
Q 002926          221 DAAYHCYCQHPPHKNVSSGPYLCP  244 (864)
Q Consensus       221 ~raYH~~CL~Ppl~svP~g~W~CP  244 (864)
                      +++||++|++  +..+|.|.|.|.
T Consensus       336 DRG~HT~CVG--L~~lP~G~WICD  357 (381)
T KOG1512|consen  336 DRGPHTLCVG--LQDLPRGEWICD  357 (381)
T ss_pred             cCCCCccccc--cccccCccchhh
Confidence            9999999999  788999999997

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=99.31  E-value=2.3e-13  Score=157.02  Aligned_cols=250  Identities=19%  Similarity=0.281  Sum_probs=159.5

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-----cccccccCCCCCceeec
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-----ICEICRRTGDPNKFMFC  217 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-----~C~VCgk~gd~~~LL~C  217 (864)
                      ++.+|.+|..+.   ++...+|++|+.|+-..|..|.++.     .++.+.|.|..|.     .|..|-+.|..  |---
T Consensus       270 edviCDvCrspD---~e~~neMVfCd~Cn~cVHqaCyGIl-----e~p~gpWlCr~Calg~~ppCvLCPkkGGa--mK~~  339 (893)
T KOG0954|consen  270 EDVICDVCRSPD---SEEANEMVFCDKCNICVHQACYGIL-----EVPEGPWLCRTCALGIEPPCVLCPKKGGA--MKPT  339 (893)
T ss_pred             ccceeceecCCC---ccccceeEEeccchhHHHHhhhcee-----ecCCCCeeehhccccCCCCeeeccccCCc--cccc
Confidence            677999999864   4567799999999999999999984     3457999999997     68888655432  1111


Q ss_pred             CCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCC
Q 002926          218 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES  297 (864)
Q Consensus       218 d~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg  297 (864)
                      ..=-.|-|..|.-=    +|.-.+-|+.=    .-..++...+...||..-                |-+|...     .
T Consensus       340 ~sgT~wAHvsCALw----IPEVsie~~ek----mePItkfs~IpesRwslv----------------C~LCk~k-----~  390 (893)
T KOG0954|consen  340 KSGTKWAHVSCALW----IPEVSIECPEK----MEPITKFSHIPESRWSLV----------------CNLCKVK-----S  390 (893)
T ss_pred             CCCCeeeEeeeeec----cceeeccCHhh----cCcccccCCCcHHHHHHH----------------HHHhccc-----C
Confidence            11227888888651    22222333321    123344556677888762                3333322     2


Q ss_pred             CCceecc--CCCCccccccCCCChHHHhhhcc--C-CCCceeCCCCCCCCcCCCChHHHHHHhhhhh----hhhcHHHHH
Q 002926          298 TPMVCCD--VCQRWVHCQCDGISDEKYLQFQV--D-GNLQYRCPTCRGECYQVRDLEDAVRELWRRK----DMADKDLIA  368 (864)
Q Consensus       298 ~~MVqCD--~C~~WfH~eCd~l~dE~y~~~gi--d-~~~~Y~CptCr~~~~~IK~~edai~r~Wr~r----e~~~~dlia  368 (864)
                      +--|+|.  .|...||..|..-.-.....++.  + -...=+|+.|-.+... +.+... .++-+++    +....+--.
T Consensus       391 GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~~-~s~g~~-~e~p~p~~~~p~~~~~e~~~  468 (893)
T KOG0954|consen  391 GACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHREG-KSLGNE-AESPHPRCHLPEQSVGEGHR  468 (893)
T ss_pred             cceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeecccccccccc-cccccc-cCCCCccccChhhhhhhhhh
Confidence            3347776  69999999998632111111111  1 1234567777654321 122211 1111222    122222223


Q ss_pred             HHHHhcCCCCccccccCCCCCCcccCC---cchhhhhhccccccccCCCCCCCCCchhhhhccccCcc
Q 002926          369 SLRAAAGLPTEDEIFSISPYSDDEENG---PVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKK  433 (864)
Q Consensus       369 slR~aqGLp~~EEif~~~P~sdDe~~~---p~~~~~~~~~~~~~s~k~~~~k~~~~~k~~~~~~~~~~  433 (864)
                      +--+++-|...|+.|+....-+|.+..   |..+++++|+|||+.+|+++++++.++|+++.....|+
T Consensus       469 ~s~r~q~l~~~e~ef~~~v~~~diae~l~~~e~~vs~iynywklkrks~~n~~lippk~d~~~~i~kk  536 (893)
T KOG0954|consen  469 SSDRAQKLQELEGEFYDIVRNEDIAELLSMPEFAVSAIYNYWKLKRKSRFNKELIPPKSDEVGLIAKK  536 (893)
T ss_pred             hhHHHHHHhhcchhHhhhhhHHHHHHHhcCchHHHHHHHHHHHHhhhccCCCcCCCCcchhccchhhH
Confidence            344566788889999999988887753   88999999999999999999999999999999877665

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=98.89  E-value=1.7e-09  Score=127.69  Aligned_cols=185  Identities=22%  Similarity=0.384  Sum_probs=128.6

Q ss_pred             CCCccccccccccCccccccCCCCCcCCCCCc-------------------cccccccCCCCCceeecCCCCCccccccc
Q 002926          169 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------------------ICEICRRTGDPNKFMFCRRCDAAYHCYCQ  229 (864)
Q Consensus       169 ~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------------------~C~VCgk~gd~~~LL~Cd~C~raYH~~CL  229 (864)
                      .|.+.||..|+.+.....+   +..|.|+.|-                   .|.+|+..+   .++.|+.|..+||.+|+
T Consensus         1 ~~~r~~~~~~~~p~~~~~~---~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl   74 (696)
T KOG0383|consen    1 TCPRAYHRVCLDPKLKEEP---EMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGG---ELLWCDTCPASFHASCL   74 (696)
T ss_pred             CCCcccCcCCCCcccccCC---cCCccCcchhhcccccccccCCcchhhhhhhhhhcCCC---cEEEeccccHHHHHHcc
Confidence            4899999999997655332   7899999986                   899999988   89999999999999999


Q ss_pred             CCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCc-c-------------ccCCCccccccccccc---------
Q 002926          230 HPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGY-T-------------CCDACGRLFVKGNYCP---------  286 (864)
Q Consensus       230 ~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~-~-------------lC~~C~elf~KgnyCp---------  286 (864)
                      ++++...|.+.|.|++| .|..- ..+..+++.|+|.... .             .-..-+++++++..++         
T Consensus        75 ~~pl~~~p~~~~~c~Rc-~~p~~-~~k~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e  152 (696)
T KOG0383|consen   75 GPPLTPQPNGEFICPRC-FCPKN-AGKIEKILGWRWKPTPKPREGNQGVISPRRSNGIVEREFFVKWQGLSYWHCSWKSE  152 (696)
T ss_pred             CCCCCcCCccceeeeee-ccCCC-cccccccceeEecCCCCccccCcCccCCcccccchhhhcccccccCCccchhHHHH
Confidence            99999999888999988 44432 2234456667765421 1             1123445566655422         


Q ss_pred             -----------cccccccC------------CCCCCceeccCCCCccccccCCCC-----hHHHhh--------hc-cCC
Q 002926          287 -----------VCLKVYRD------------SESTPMVCCDVCQRWVHCQCDGIS-----DEKYLQ--------FQ-VDG  329 (864)
Q Consensus       287 -----------VC~K~Y~D------------~dg~~MVqCD~C~~WfH~eCd~l~-----dE~y~~--------~g-id~  329 (864)
                                 ++...+.+            .+....++|+.|+..||..|....     .-....        +. ...
T Consensus       153 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k  232 (696)
T KOG0383|consen  153 LLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWK  232 (696)
T ss_pred             HHhhhhcccchHhhhhhhhcccCccccccccccCccccccccchhhhhheeccccccccchhhhhhcccccceeeEeeec
Confidence                       12222211            134567788889999999998731     000000        00 113


Q ss_pred             CCceeCCCCCCCCcCCCChHHHHHHhhhhhhh
Q 002926          330 NLQYRCPTCRGECYQVRDLEDAVRELWRRKDM  361 (864)
Q Consensus       330 ~~~Y~CptCr~~~~~IK~~edai~r~Wr~re~  361 (864)
                      .+.|.=.++..+..+++.|..+.+++|.+++.
T Consensus       233 ~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~  264 (696)
T KOG0383|consen  233 ELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK  264 (696)
T ss_pred             cCCccccCCCcCCCCcccCcccccccccccCc
Confidence            45777788888888999999999999998877

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.73  E-value=5.9e-09  Score=120.42  Aligned_cols=47  Identities=30%  Similarity=0.872  Sum_probs=43.6

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCC--cCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPH--KNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl--~svP~g~W~CP~C~  247 (864)
                      +|..|+..+..+.+++|+.|++.||+.||.||+  ..+|.+.|+|+.|.
T Consensus       255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~  303 (613)
T KOG4299|consen  255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECK  303 (613)
T ss_pred             HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCe
Confidence            899999999887889999999999999999995  57999999999997

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.49  E-value=6.2e-08  Score=112.17  Aligned_cols=97  Identities=23%  Similarity=0.590  Sum_probs=76.0

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-----------------------
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-----------------------  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-----------------------  200 (864)
                      .++|..|.+.|.-     .++|+|++|+++||+.||.|+... ..++.+.|+|++|.                       
T Consensus       253 ~~fCsaCn~~~~F-----~~~i~CD~Cp~sFH~~CLePPl~~-eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t  326 (613)
T KOG4299|consen  253 EDFCSACNGSGLF-----NDIICCDGCPRSFHQTCLEPPLEP-ENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFT  326 (613)
T ss_pred             HHHHHHhCCcccc-----ccceeecCCchHHHHhhcCCCCCc-ccCCCCccccCCCeeeeecccchhhhhhccchHHHHH
Confidence            6699999987731     367999999999999999998654 34568999999997                       


Q ss_pred             -------------------------------------------------------------------cccccccCCCCC-
Q 002926          201 -------------------------------------------------------------------ICEICRRTGDPN-  212 (864)
Q Consensus       201 -------------------------------------------------------------------~C~VCgk~gd~~-  212 (864)
                                                                                         +|..|..+.-.. 
T Consensus       327 ~~~~~IDs~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~g~~ssg~~~~~~~c~~~~~~s~  406 (613)
T KOG4299|consen  327 QFVSKIDSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDENGIDSSGTELLCGRCSKTQTESV  406 (613)
T ss_pred             HHHHhhhccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCccCCCccCcchhhcccCcchhhhh
Confidence                                                                               566676553322 


Q ss_pred             ceeecCCCCCcccccccCCCCcCCCCC--CccccCCC
Q 002926          213 KFMFCRRCDAAYHCYCQHPPHKNVSSG--PYLCPKHT  247 (864)
Q Consensus       213 ~LL~Cd~C~raYH~~CL~Ppl~svP~g--~W~CP~C~  247 (864)
                      .++-|+.|...||..|+ ++....|..  .|.||.+.
T Consensus       407 ~vl~c~ye~s~~h~dc~-~~~~~~ps~ss~~k~p~~s  442 (613)
T KOG4299|consen  407 VVLDCQYEQSPEHPDCK-DDSKALPSLSSKWKCPRVS  442 (613)
T ss_pred             hhhccccccCCCCcccc-chhhhCCCCcccccCCCCC
Confidence            36889999999999999 455556644  57999875

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.43  E-value=6.6e-08  Score=113.18  Aligned_cols=47  Identities=23%  Similarity=0.770  Sum_probs=44.7

Q ss_pred             cccccccCCCCCceeecCCCCCc-ccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAA-YHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~ra-YH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      -|.+|.....++.||+|+.|+.+ ||++||+|++..+|-+.|||+.|.
T Consensus       217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~  264 (1134)
T KOG0825|consen  217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS  264 (1134)
T ss_pred             cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence            79999999888899999999998 999999999999999999999986

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=98.37  E-value=2.3e-07  Score=105.43  Aligned_cols=118  Identities=18%  Similarity=0.379  Sum_probs=78.4

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc---------------------
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk---------------------  200 (864)
                      .....|.+|...-   .....++..|+.|.++||..|-.+....     .+.|.+.+|.                     
T Consensus        81 ~~e~~~nv~~s~~---~~p~~e~~~~~r~~~~~~q~~~i~~~~~-----~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l  152 (464)
T KOG4323|consen   81 SSELNPNVLTSET---VLPENEKVICGRCKSGYHQGCNIPRFPS-----LDIGESTECVFPIFSQEGGALKKGRLARPSL  152 (464)
T ss_pred             ccccCCccccccc---ccCchhhhhhhhhccCcccccCccCcCc-----CCccccccccccccccccccccccccccccc
Confidence            3556788888643   2234478999999999999998764321     1233333332                     


Q ss_pred             -----------------ccc--ccccCCCCCceeecCCCCCcccccccCCCCcC----CCCCCccccCCCcccCCCCCCC
Q 002926          201 -----------------ICE--ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTKCHSCGSNVP  257 (864)
Q Consensus       201 -----------------~C~--VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~s----vP~g~W~CP~C~~C~~CG~~~p  257 (864)
                                       .|.  .|+.++..++||+|+.|..|||..|+.|+...    -+...|+|..|.+     ...-
T Consensus       153 ~y~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~-----~~~~  227 (464)
T KOG4323|consen  153 PYPEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR-----GPKK  227 (464)
T ss_pred             cCcccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc-----chhh
Confidence                             233  56677888899999999999999999997753    3567899988753     1111


Q ss_pred             CCCCccccccCcccc
Q 002926          258 GNGLSVRWFLGYTCC  272 (864)
Q Consensus       258 gk~ls~rW~~~~~lC  272 (864)
                      ......+|.....++
T Consensus       228 ~~r~t~~~~dv~~la  242 (464)
T KOG4323|consen  228 VPRLTLRWADVLHLA  242 (464)
T ss_pred             ccccccccccccchh
Confidence            122455776654444

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=8.9e-08  Score=77.45  Aligned_cols=48  Identities=31%  Similarity=0.863  Sum_probs=40.6

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCc--CCCCCCccccCCCc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK--NVSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~--svP~g~W~CP~C~~  248 (864)
                      +|.+|+...+.+.||+|+.|++|||..|++++..  ..+...|+|+.|..
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            5889998777789999999999999999999876  34456999999753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=98.34  E-value=3.8e-07  Score=91.55  Aligned_cols=86  Identities=26%  Similarity=0.685  Sum_probs=63.6

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCC---CC--CcCCCCCc--------------cccccc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH---WS--SWKCPSCR--------------ICEICR  206 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~---~~--~W~CpeCk--------------~C~VCg  206 (864)
                      +|.+|...|..  .....||+|.+|..+||..||++......++.   ..  -.+|..|.              .|..|.
T Consensus         1 ~C~~C~~~g~~--~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~   78 (175)
T PF15446_consen    1 TCDTCGYEGDD--RNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK   78 (175)
T ss_pred             CcccccCCCCC--ccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence            48888753321  12238999999999999999999765433332   23  34799997              899997


Q ss_pred             cCCC--------------------------------------CCceeecCCCCCcccccccCCCC
Q 002926          207 RTGD--------------------------------------PNKFMFCRRCDAAYHCYCQHPPH  233 (864)
Q Consensus       207 k~gd--------------------------------------~~~LL~Cd~C~raYH~~CL~Ppl  233 (864)
                      ..|.                                      ++.|++|..|.++||+..|.+..
T Consensus        79 ~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~  143 (175)
T PF15446_consen   79 KPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS  143 (175)
T ss_pred             CCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence            6543                                      22588999999999999998753

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=98.28  E-value=7.3e-07  Score=101.43  Aligned_cols=119  Identities=24%  Similarity=0.410  Sum_probs=76.8

Q ss_pred             CCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCccc---CCCCCCCCCCC---------ccccccCccccCCCcc
Q 002926          210 DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGSNVPGNGL---------SVRWFLGYTCCDACGR  277 (864)
Q Consensus       210 d~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~---~CG~~~pgk~l---------s~rW~~~~~lC~~C~e  277 (864)
                      .++.+..|.+|...||..|.-|....  .+.|.+..|+.=.   .-+..+.+...         ...|...         
T Consensus        96 p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~---------  164 (464)
T KOG4323|consen   96 PENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSG---------  164 (464)
T ss_pred             CchhhhhhhhhccCcccccCccCcCc--CCccccccccccccccccccccccccccccccCcccccccCcc---------
Confidence            34578999999999999999875432  3456666655321   11111111111         1112110         


Q ss_pred             ccccccccccccccccCCCCCCceeccCCCCccccccCCC--ChHHHhhhccCCCCceeCCCCCCCCcCC
Q 002926          278 LFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI--SDEKYLQFQVDGNLQYRCPTCRGECYQV  345 (864)
Q Consensus       278 lf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l--~dE~y~~~gid~~~~Y~CptCr~~~~~I  345 (864)
                       +.-..-|.||+++-...++ .||+|+.|..|||..|...  .++++    .++++.|+|.+|.+....+
T Consensus       165 -~~~n~qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~----~D~~~~w~C~~C~~~~~~~  228 (464)
T KOG4323|consen  165 -HKVNLQCSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELA----GDPFYEWFCDVCNRGPKKV  228 (464)
T ss_pred             -ccccceeeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhhc----cCccceEeehhhccchhhc
Confidence             0011238899988777777 9999999999999999973  33432    4689999999999875443

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=98.19  E-value=7.3e-07  Score=103.77  Aligned_cols=132  Identities=22%  Similarity=0.480  Sum_probs=85.7

Q ss_pred             ccccccCCC--CCceeecC--CCCCcccccccCCCCcCCCCCCccccCCC--------cccCCCCCC--CCCCCcccccc
Q 002926          202 CEICRRTGD--PNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHT--------KCHSCGSNV--PGNGLSVRWFL  267 (864)
Q Consensus       202 C~VCgk~gd--~~~LL~Cd--~C~raYH~~CL~Ppl~svP~g~W~CP~C~--------~C~~CG~~~--pgk~ls~rW~~  267 (864)
                      |.||.+-..  ++.|+.||  .|..+.|..|++  +..+|.+.|||..|.        +|.-|.-+.  ..+.+..-|.+
T Consensus         8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH   85 (900)
T KOG0956|consen    8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH   85 (900)
T ss_pred             eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence            558875433  45799999  799999999999  788999999999994        688887543  12334455754


Q ss_pred             Ccccc---CCCcccc------------c-c---ccccccccccccCCC--CCCceeccC--CCCccccccCC---CChHH
Q 002926          268 GYTCC---DACGRLF------------V-K---GNYCPVCLKVYRDSE--STPMVCCDV--CQRWVHCQCDG---ISDEK  321 (864)
Q Consensus       268 ~~~lC---~~C~elf------------~-K---gnyCpVC~K~Y~D~d--g~~MVqCD~--C~~WfH~eCd~---l~dE~  321 (864)
                      .  .|   +..-+|-            + .   .+.|.||...-++++  .+--++|..  |.+.||..|..   ++-|+
T Consensus        86 V--VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE  163 (900)
T KOG0956|consen   86 V--VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE  163 (900)
T ss_pred             E--EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceec
Confidence            1  22   1111110            0 0   124889987765443  344567864  99999999987   33332


Q ss_pred             HhhhccCCCCceeCCCCCC
Q 002926          322 YLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       322 y~~~gid~~~~Y~CptCr~  340 (864)
                      -   +.--+.+-+|-+|+-
T Consensus       164 ~---gn~~dNVKYCGYCk~  179 (900)
T KOG0956|consen  164 E---GNISDNVKYCGYCKY  179 (900)
T ss_pred             c---ccccccceechhHHH
Confidence            1   111245788999983

>smart00249 PHD PHD zinc finger

Probab=98.14  E-value=2e-06  Score=66.46  Aligned_cols=46  Identities=33%  Similarity=0.846  Sum_probs=39.4

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCc-CCCCCCccccCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK-NVSSGPYLCPKH  246 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~-svP~g~W~CP~C  246 (864)
                      +|.+|+...+.+.++.|+.|++|||..|++++.. ..+...|+|+.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            4778888766678999999999999999998766 566789999986

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=1.2e-06  Score=70.95  Aligned_cols=49  Identities=29%  Similarity=0.833  Sum_probs=38.0

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      +|.+|+..+     ..++||.|+.|.++||..|++++....... ...|+|+.|.
T Consensus         1 ~C~vC~~~~-----~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~-~~~w~C~~C~   49 (51)
T PF00628_consen    1 YCPVCGQSD-----DDGDMIQCDSCNRWYHQECVGPPEKAEEIP-SGDWYCPNCR   49 (51)
T ss_dssp             EBTTTTSSC-----TTSSEEEBSTTSCEEETTTSTSSHSHHSHH-SSSBSSHHHH
T ss_pred             eCcCCCCcC-----CCCCeEEcCCCChhhCcccCCCChhhccCC-CCcEECcCCc
Confidence            588898743     244999999999999999999987643322 3499999885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=97.98  E-value=4.3e-06  Score=102.98  Aligned_cols=133  Identities=22%  Similarity=0.484  Sum_probs=79.2

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-------cccccccCCCCCce
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------ICEICRRTGDPNKF  214 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------~C~VCgk~gd~~~L  214 (864)
                      ..+.+|.||.++..   .....+++||.|+.++|..|.+.     +-++++.|.|..|.       .|..|-..+.    
T Consensus       217 ~~D~~C~iC~~~~~---~n~n~ivfCD~Cnl~VHq~Cygi-----~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~g----  284 (1051)
T KOG0955|consen  217 EEDAVCCICLDGEC---QNSNVIVFCDGCNLAVHQECYGI-----PFIPEGQWLCRRCLQSPQRPVRCLLCPSKGG----  284 (1051)
T ss_pred             CCCccceeeccccc---CCCceEEEcCCCcchhhhhccCC-----CCCCCCcEeehhhccCcCcccceEeccCCCC----
Confidence            45669999998752   23358999999999999999995     33468999999995       4555543321    


Q ss_pred             eecC-CCCCcccccccCCCCcCCC--CCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccccccccc
Q 002926          215 MFCR-RCDAAYHCYCQHPPHKNVS--SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKV  291 (864)
Q Consensus       215 L~Cd-~C~raYH~~CL~Ppl~svP--~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~  291 (864)
                      .++. .=++|-|..|.-- .+.+.  ...+         .-+.....++...||..                .|.+|...
T Consensus       285 AFkqt~dgrw~Hv~caiw-ipev~F~nt~~---------~E~I~~i~~i~~aRwkL----------------~cy~cK~~  338 (1051)
T KOG0955|consen  285 AFKQTDDGRWAHVVCAIW-IPEVSFANTVF---------LEPIDSIENIPPARWKL----------------TCYICKQK  338 (1051)
T ss_pred             cceeccCCceeeeehhhc-ccccccccchh---------hccccchhcCcHhhhhc----------------eeeeeccC
Confidence            1111 1245566666541 11110  0001         11222344556677765                24444332


Q ss_pred             ccCCCCCCceeccC--CCCccccccCC
Q 002926          292 YRDSESTPMVCCDV--CQRWVHCQCDG  316 (864)
Q Consensus       292 Y~D~dg~~MVqCD~--C~~WfH~eCd~  316 (864)
                      .    -+--|||..  |-.|||..|..
T Consensus       339 ~----~gaciqcs~~~c~~a~hvtca~  361 (1051)
T KOG0955|consen  339 G----LGACIQCSKANCYTAFHVTCAR  361 (1051)
T ss_pred             C----CCcceecchhhhhhhhhhhhHh
Confidence            1    133477764  99999999986

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=97.98  E-value=3e-06  Score=98.83  Aligned_cols=53  Identities=25%  Similarity=0.684  Sum_probs=41.5

Q ss_pred             cccccccccccCcccCCceeecC--CCCccccccccccCccccccCCCCCcCCCCCc--------cccccc
Q 002926          146 MCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------ICEICR  206 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk--------~C~VCg  206 (864)
                      =|.+|.+-  .++. ...||+||  .|--+.|..|.++.     .++.+.|+|..|.        .|.+|-
T Consensus         7 GCCVCSDE--rGWa-eNPLVYCDG~nCsVAVHQaCYGIv-----qVPtGpWfCrKCesqeraarvrCeLCP   69 (900)
T KOG0956|consen    7 GCCVCSDE--RGWA-ENPLVYCDGHNCSVAVHQACYGIV-----QVPTGPWFCRKCESQERAARVRCELCP   69 (900)
T ss_pred             ceeeecCc--CCCc-cCceeeecCCCceeeeehhcceeE-----ecCCCchhhhhhhhhhhhccceeeccc
Confidence            48899862  2232 24899999  79999999999983     4568999999996        677774

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=97.92  E-value=2.8e-06  Score=99.11  Aligned_cols=89  Identities=25%  Similarity=0.619  Sum_probs=63.3

Q ss_pred             CCcCCCCCccccccccCCC--CCceeecCCCCCcccccccCCCCcCC-CCCCccccCCCcccCCCCCCCCCCCccccccC
Q 002926          192 SSWKCPSCRICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLG  268 (864)
Q Consensus       192 ~~W~CpeCk~C~VCgk~gd--~~~LL~Cd~C~raYH~~CL~Ppl~sv-P~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~  268 (864)
                      ..=.|..|.+|.+|+..|.  ...|+.|..|+..||.+|+..-+... -.+.|.|+.|+.|..|+....       | ..
T Consensus        11 ~~~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD-------~-~k   82 (694)
T KOG4443|consen   11 SDKAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD-------P-KK   82 (694)
T ss_pred             cchhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC-------c-cc
Confidence            3445677779999987664  34699999999999999999533322 245599999999999995421       1 15


Q ss_pred             ccccCCCcccccccccccccccccc
Q 002926          269 YTCCDACGRLFVKGNYCPVCLKVYR  293 (864)
Q Consensus       269 ~~lC~~C~elf~KgnyCpVC~K~Y~  293 (864)
                      +.+|.+|-..|     ...|.+...
T Consensus        83 f~~Ck~cDvsy-----h~yc~~P~~  102 (694)
T KOG4443|consen   83 FLLCKRCDVSY-----HCYCQKPPN  102 (694)
T ss_pred             ccccccccccc-----cccccCCcc
Confidence            77898887554     445555543

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.91  E-value=3.8e-06  Score=90.06  Aligned_cols=83  Identities=25%  Similarity=0.541  Sum_probs=62.9

Q ss_pred             CCCceeecCCCCCcccccccCCCCcC---CCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccc
Q 002926          210 DPNKFMFCRRCDAAYHCYCQHPPHKN---VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCP  286 (864)
Q Consensus       210 d~~~LL~Cd~C~raYH~~CL~Ppl~s---vP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCp  286 (864)
                      ..+.++.|..|...||.+|+.-+...   +-...|.|..|..|.-|+...                              
T Consensus       275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~------------------------------  324 (381)
T KOG1512|consen  275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV------------------------------  324 (381)
T ss_pred             hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc------------------------------
Confidence            34479999999999999999954432   346799999997666664321                              


Q ss_pred             cccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCC-CCC
Q 002926          287 VCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP-TCR  339 (864)
Q Consensus       287 VC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~Cp-tCr  339 (864)
                               -..+|+-||.|++-||..|+++.        .-|.+.|+|- .|.
T Consensus       325 ---------~E~E~~FCD~CDRG~HT~CVGL~--------~lP~G~WICD~~C~  361 (381)
T KOG1512|consen  325 ---------IESEHLFCDVCDRGPHTLCVGLQ--------DLPRGEWICDMRCR  361 (381)
T ss_pred             ---------cchheeccccccCCCCccccccc--------cccCccchhhhHHH
Confidence                     13457899999999999999973        3467899996 354

>smart00249 PHD PHD zinc finger

Probab=97.88  E-value=1.1e-05  Score=62.32  Aligned_cols=47  Identities=34%  Similarity=0.833  Sum_probs=36.1

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC  338 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptC  338 (864)
                      +|.+|.+.+   +...||+|+.|++|||..|+++...     .......|+|+.|
T Consensus         1 ~C~~C~~~~---~~~~~i~C~~C~~~~H~~C~~~~~~-----~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPD---DGGELLQCDGCDRWYHQTCLGPPLL-----EEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcC---CCCCEEECCCCCchhhhhhCCCccc-----CCCCCCCEECcCC
Confidence            367787766   4567999999999999999986433     1235668999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=97.77  E-value=5.3e-06  Score=88.52  Aligned_cols=89  Identities=24%  Similarity=0.526  Sum_probs=66.8

Q ss_pred             cCCCCCceeecCCCCCcccccccCCCCc---CCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccc
Q 002926          207 RTGDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN  283 (864)
Q Consensus       207 k~gd~~~LL~Cd~C~raYH~~CL~Ppl~---svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~Kgn  283 (864)
                      +.+-++.++.|..|++.=|..||+-...   .+-...|.|-.|..|.-||..                            
T Consensus       239 kt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgts----------------------------  290 (336)
T KOG1244|consen  239 KTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTS----------------------------  290 (336)
T ss_pred             ccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCc----------------------------
Confidence            4555668999999999999999994322   245678999888766666542                            


Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                              -+|   .+++-||.|++-||..|+...      +..+|++.|.|..|-.
T Consensus       291 --------end---dqllfcddcdrgyhmyclspp------m~eppegswsc~KOG~  330 (336)
T KOG1244|consen  291 --------END---DQLLFCDDCDRGYHMYCLSPP------MVEPPEGSWSCHLCLE  330 (336)
T ss_pred             --------CCC---ceeEeecccCCceeeEecCCC------cCCCCCCchhHHHHHH
Confidence                    122   357889999999999998742      1246899999999964

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=97.69  E-value=1.7e-05  Score=89.99  Aligned_cols=134  Identities=23%  Similarity=0.489  Sum_probs=83.2

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc-------cccccccCCCCCce
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------ICEICRRTGDPNKF  214 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk-------~C~VCgk~gd~~~L  214 (864)
                      .-++.|.+|.+..+   +..+-+++|++|.-+.|..|.++.     -++++.|.|..|.       .|..|-...    -
T Consensus       191 ~~d~~C~~c~~t~~---eN~naiVfCdgC~i~VHq~CYGI~-----f~peG~WlCrkCi~~~~~i~~C~fCps~d----G  258 (669)
T COG5141         191 EFDDICTKCTSTHN---ENSNAIVFCDGCEICVHQSCYGIQ-----FLPEGFWLCRKCIYGEYQIRCCSFCPSSD----G  258 (669)
T ss_pred             hhhhhhHhcccccc---CCcceEEEecCcchhhhhhcccce-----ecCcchhhhhhhcccccceeEEEeccCCC----C
Confidence            35678888987663   334579999999999999999984     4568999999996       355554332    1


Q ss_pred             eecC-CCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccccccccccc
Q 002926          215 MFCR-RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYR  293 (864)
Q Consensus       215 L~Cd-~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~  293 (864)
                      .+|. .=++|-|.-|..- ++.+.-+...       ..-......+..+.+|..+                |.+|.+.  
T Consensus       259 aFkqT~dgrW~H~iCA~~-~pelsF~~l~-------~~dpI~~i~sVs~srwkl~----------------C~iCk~~--  312 (669)
T COG5141         259 AFKQTSDGRWGHVICAMF-NPELSFGHLL-------SKDPIDNIASVSSSRWKLG----------------CLICKEF--  312 (669)
T ss_pred             ceeeccCCchHhHhHHHh-cchhcccccc-------ccchhhhhcccchhhHhhe----------------eeEEccc--
Confidence            2333 2356777777652 1111111000       0001122334566788763                4455443  


Q ss_pred             CCCCCCceeccC--CCCccccccCC
Q 002926          294 DSESTPMVCCDV--CQRWVHCQCDG  316 (864)
Q Consensus       294 D~dg~~MVqCD~--C~~WfH~eCd~  316 (864)
                         ++.-|||..  |-+.||..|..
T Consensus       313 ---~GtcIqCs~~nC~~aYHVtCAr  334 (669)
T COG5141         313 ---GGTCIQCSYFNCTRAYHVTCAR  334 (669)
T ss_pred             ---Ccceeeecccchhhhhhhhhhh
Confidence               355688875  99999999976

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=97.46  E-value=4e-05  Score=82.80  Aligned_cols=39  Identities=26%  Similarity=0.589  Sum_probs=33.8

Q ss_pred             cccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCCc
Q 002926          205 CRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       205 Cgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      |...|   .|+-|+.  |+ .|||+.|++  +...|.+.|||+.|..
T Consensus       226 qvsyg---~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~  267 (274)
T KOG1973|consen  226 QVSYG---KMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKA  267 (274)
T ss_pred             ccccc---cccccCCCCCCcceEEEeccc--cccCCCCcccchhhhh
Confidence            55556   8999997  99 999999999  7788999999999863

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=97.45  E-value=8.1e-05  Score=88.98  Aligned_cols=92  Identities=24%  Similarity=0.494  Sum_probs=65.1

Q ss_pred             CCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCC
Q 002926          219 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEST  298 (864)
Q Consensus       219 ~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~  298 (864)
                      .|.+.||..|+.|.+...+.+.|.||.|..   -+.........              ..+...++|.+|.      +++
T Consensus         1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~---~~~~~~~~~~~--------------~~~~~~e~c~ic~------~~g   57 (696)
T KOG0383|consen    1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCES---SSAQVEAKDDD--------------WDDAEQEACRICA------DGG   57 (696)
T ss_pred             CCCcccCcCCCCcccccCCcCCccCcchhh---cccccccccCC--------------cchhhhhhhhhhc------CCC
Confidence            489999999999988888889999999842   11111111111              2344567898997      467


Q ss_pred             CceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926          299 PMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR  339 (864)
Q Consensus       299 ~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr  339 (864)
                      .+|+|+.|+.|||..|++..-.      ..+...|.|+-|.
T Consensus        58 ~~l~c~tC~~s~h~~cl~~pl~------~~p~~~~~c~Rc~   92 (696)
T KOG0383|consen   58 ELLWCDTCPASFHASCLGPPLT------PQPNGEFICPRCF   92 (696)
T ss_pred             cEEEeccccHHHHHHccCCCCC------cCCccceeeeeec
Confidence            8899999999999999973211      1244569999994

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=97.44  E-value=2.6e-05  Score=95.01  Aligned_cols=93  Identities=18%  Similarity=0.412  Sum_probs=74.0

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc---------------------
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk---------------------  200 (864)
                      .-++.|.+|.+.+        .+++|..|++.||+.|+.++..   .++...|.|.-|.                     
T Consensus       342 ~~ddhcrf~~d~~--------~~lc~Et~prvvhlEcv~hP~~---~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~i  410 (1414)
T KOG1473|consen  342 EYDDHCRFCHDLG--------DLLCCETCPRVVHLECVFHPRF---AVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSI  410 (1414)
T ss_pred             eecccccccCccc--------ceeecccCCceEEeeecCCccc---cCCCccchhhhhhhhccCcccccccChhhcccce
Confidence            3568999999877        8999999999999999998654   4457889998886                     


Q ss_pred             -------------------cccccccCCCCCceeecCC-CCCcccc-cccCCCC--cCCCCCCccccCCCc
Q 002926          201 -------------------ICEICRRTGDPNKFMFCRR-CDAAYHC-YCQHPPH--KNVSSGPYLCPKHTK  248 (864)
Q Consensus       201 -------------------~C~VCgk~gd~~~LL~Cd~-C~raYH~-~CL~Ppl--~svP~g~W~CP~C~~  248 (864)
                                         .|.+|+..+   .++.|.. |+..||. .|++...  .-++.+.|.|+.|+.
T Consensus       411 R~~~iG~dr~gr~ywfi~rrl~Ie~~de---t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~  478 (1414)
T KOG1473|consen  411 RHTPIGRDRYGRKYWFISRRLRIEGMDE---TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII  478 (1414)
T ss_pred             eccCCCcCccccchhceeeeeEEecCCC---cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence                               455555333   6788886 9999998 9999432  346788999999873

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.06  E-value=0.00021  Score=84.96  Aligned_cols=50  Identities=32%  Similarity=0.757  Sum_probs=39.8

Q ss_pred             ccccccccccccccCcccCCceeecCCCCcc-ccccccccCccccccCCCCCcCCCCCc
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKK-YHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~ra-YH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ...-|.+|....     ..+.||.|+.|+.. ||.+||+|++-..+   -+.|+|++|.
T Consensus       214 E~~~C~IC~~~D-----pEdVLLLCDsCN~~~YH~YCLDPdl~eiP---~~eWYC~NC~  264 (1134)
T KOG0825|consen  214 EEVKCDICTVHD-----PEDVLLLCDSCNKVYYHVYCLDPDLSESP---VNEWYCTNCS  264 (1134)
T ss_pred             ccccceeeccCC-----hHHhheeecccccceeeccccCccccccc---ccceecCcch
Confidence            345799998754     34589999999998 99999999775333   5789999994

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=96.86  E-value=0.00042  Score=75.05  Aligned_cols=33  Identities=27%  Similarity=0.889  Sum_probs=28.8

Q ss_pred             ceeecCC--CC-ccccccccccCccccccCCCCCcCCCCCc
Q 002926          163 RMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       163 eLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      +||-||.  |+ .+||+.|+++...     +.+.|+|+.|+
T Consensus       231 ~Mi~CDn~~C~~eWFH~~CVGL~~~-----PkgkWyC~~C~  266 (274)
T KOG1973|consen  231 KMIGCDNPGCPIEWFHFTCVGLKTK-----PKGKWYCPRCK  266 (274)
T ss_pred             cccccCCCCCCcceEEEeccccccC-----CCCcccchhhh
Confidence            9999995  99 9999999999643     46889999995

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=96.68  E-value=0.00075  Score=72.10  Aligned_cols=43  Identities=23%  Similarity=0.708  Sum_probs=34.9

Q ss_pred             cccccccCCCCCceeecC--CCCC-cccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCR--RCDA-AYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd--~C~r-aYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| .|.... -..|+-||  .|.+ |||..|++  +...|.|.|||+.|.
T Consensus       223 YC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk  268 (271)
T COG5034         223 YC-FCQQVS-YGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK  268 (271)
T ss_pred             EE-Eecccc-cccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence            44 676543 33899999  6865 99999999  788999999999985

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=96.65  E-value=0.00096  Score=66.58  Aligned_cols=26  Identities=35%  Similarity=0.859  Sum_probs=24.4

Q ss_pred             cccccccCCCCcCCCCCCccccCCCc
Q 002926          223 AYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       223 aYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      +||++||.||+..+|.+.|+||.|..
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~   26 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEV   26 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcC
Confidence            59999999999999999999999973

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=96.65  E-value=0.0013  Score=81.80  Aligned_cols=46  Identities=28%  Similarity=0.644  Sum_probs=40.1

Q ss_pred             cccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926          201 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      +|.+|.+..-.  +.+++|+.|+.++|++|++  .+.+|.+.|+|..|..
T Consensus       221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~  268 (1051)
T KOG0955|consen  221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQ  268 (1051)
T ss_pred             cceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhcc
Confidence            78899887655  5799999999999999999  5668899999999874

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=96.58  E-value=0.00095  Score=76.47  Aligned_cols=55  Identities=22%  Similarity=0.541  Sum_probs=43.8

Q ss_pred             CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCC-CCCcCCCCC
Q 002926          140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH-WSSWKCPSC  199 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~-~~~W~CpeC  199 (864)
                      .......|.||+..-     .++.|+.||.|..+||+.||.|++...+... ...|+|.+|
T Consensus       540 ~~a~~ysCgiCkks~-----dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  540 PKAMNYSCGICKKST-----DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             ccccceeeeeeccch-----hhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence            344567899999753     3558999999999999999999987655443 569999988

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=96.53  E-value=0.0013  Score=78.17  Aligned_cols=45  Identities=33%  Similarity=0.900  Sum_probs=39.4

Q ss_pred             cccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      .|.+|..+..+  +.|++|+.|....|..|.+  +..+|.+.|.|..|.
T Consensus       273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Ca  319 (893)
T KOG0954|consen  273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCA  319 (893)
T ss_pred             eeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcc
Confidence            78899877433  4799999999999999999  788999999999985

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=96.51  E-value=0.003  Score=64.16  Aligned_cols=33  Identities=27%  Similarity=0.891  Sum_probs=25.0

Q ss_pred             cccccccCC---CCCceeecCCCCCcccccccCCCC
Q 002926          201 ICEICRRTG---DPNKFMFCRRCDAAYHCYCQHPPH  233 (864)
Q Consensus       201 ~C~VCgk~g---d~~~LL~Cd~C~raYH~~CL~Ppl  233 (864)
                      +|.+|...+   .-..|++|..|-.+||..||++-.
T Consensus         1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs   36 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRS   36 (175)
T ss_pred             CcccccCCCCCccCCCeEEcCccChHHHhhhcCCcc
Confidence            366775432   233799999999999999999743

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=96.44  E-value=0.0012  Score=81.19  Aligned_cols=129  Identities=15%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV  280 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~  280 (864)
                      .|.+|.+.+   .+++|..|++.||..|+.+|...+|...|-|--|..|..-|....--..+-.|  .+..|..=+.-.+
T Consensus       346 hcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~--~~iR~~~iG~dr~  420 (1414)
T KOG1473|consen  346 HCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNV--DSIRHTPIGRDRY  420 (1414)
T ss_pred             cccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcc--cceeccCCCcCcc
Confidence            677888777   89999999999999999999999999999999988766444321000001111  1122222221111


Q ss_pred             ccc------ccccccccccCCCCCCceeccC-CCCcccc-ccCCCChHHHhhhccCCCCceeCCCCCCCCcC
Q 002926          281 KGN------YCPVCLKVYRDSESTPMVCCDV-CQRWVHC-QCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ  344 (864)
Q Consensus       281 Kgn------yCpVC~K~Y~D~dg~~MVqCD~-C~~WfH~-eCd~l~dE~y~~~gid~~~~Y~CptCr~~~~~  344 (864)
                      .-.      -|.||.     + ...+++|.. |++.||. .|+.-   .|+... -.++.|.|+.|.-..+.
T Consensus       421 gr~ywfi~rrl~Ie~-----~-det~l~yysT~pqly~ll~cLd~---~~~e~~-L~d~i~~~~ee~~rqM~  482 (1414)
T KOG1473|consen  421 GRKYWFISRRLRIEG-----M-DETLLWYYSTCPQLYHLLRCLDR---TYVEMY-LCDGIWERREEIIRQMG  482 (1414)
T ss_pred             ccchhceeeeeEEec-----C-CCcEEEEecCcHHHHHHHHHhch---HHHHHh-hccchhhhHHHHHHhcc
Confidence            111      266665     2 345678877 9999999 99763   222221 24678999999765544

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=96.42  E-value=0.001  Score=76.14  Aligned_cols=46  Identities=26%  Similarity=0.689  Sum_probs=41.8

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCC----CCccccCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSS----GPYLCPKH  246 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~----g~W~CP~C  246 (864)
                      .|.+|++..+...+++|+.|...||..||.||++-+|.    ..|.|..|
T Consensus       546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence            79999999888789999999999999999999998884    36999987

>smart00333 TUDOR Tudor domain

Probab=96.32  E-value=0.0074  Score=49.58  Aligned_cols=52  Identities=13%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeecc
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQK  858 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~~  858 (864)
                      ++|..|.+.+ .|+.|+.|+|.++... ..+.|.|.| |..+++.  .+.+|.+|..
T Consensus         4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~--~~~l~~l~~~   56 (57)
T smart00333        4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVP--PSDLRPLPEE   56 (57)
T ss_pred             CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEe--HHHeecCCCC
Confidence            5789999999 9999999999999884 349999999 9998776  6779988865

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=96.12  E-value=0.0012  Score=84.58  Aligned_cols=47  Identities=30%  Similarity=0.969  Sum_probs=44.9

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      .|.+|...++...|+.|+.|..+||++|+.|.+..+|.+.|+||.|.
T Consensus      1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred             hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence            89999998888899999999999999999999999999999999986

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=95.96  E-value=0.0048  Score=66.17  Aligned_cols=46  Identities=24%  Similarity=0.761  Sum_probs=35.9

Q ss_pred             ccccccccccccccCcccCCceeecC--CCCc-cccccccccCccccccCCCCCcCCCCCc
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCK--SCGK-KYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~r-aYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      .+.+| .|....      ..+||-||  .|-+ +||+.|+++..+     |.+.|+|++|+
T Consensus       220 e~lYC-fCqqvS------yGqMVaCDn~nCkrEWFH~~CVGLk~p-----PKG~WYC~eCk  268 (271)
T COG5034         220 EELYC-FCQQVS------YGQMVACDNANCKREWFHLECVGLKEP-----PKGKWYCPECK  268 (271)
T ss_pred             ceeEE-Eecccc------cccceecCCCCCchhheeccccccCCC-----CCCcEeCHHhH
Confidence            45577 587643      23999999  7984 999999998543     57999999995

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=95.55  E-value=0.029  Score=47.68  Aligned_cols=48  Identities=21%  Similarity=0.206  Sum_probs=36.2

Q ss_pred             cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecC
Q 002926          801 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG  848 (864)
Q Consensus       801 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~g  848 (864)
                      |=++|.+|.+.||-++.|++|.|++.-.-+-.-.|.++||...+|..+
T Consensus         5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~   52 (55)
T PF09465_consen    5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELKEN   52 (55)
T ss_dssp             SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEECC
T ss_pred             cccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEeccc
Confidence            458999999999999999999999975555569999999998776654

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=95.54  E-value=0.0062  Score=69.99  Aligned_cols=48  Identities=29%  Similarity=0.619  Sum_probs=39.0

Q ss_pred             CccccccccCCCC--CceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926          199 CRICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       199 Ck~C~VCgk~gd~--~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      |..|.+|.....+  +-+++|+.|..+.|..|.+  +.-+|.|.|+|..|..
T Consensus       193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~  242 (669)
T COG5141         193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIY  242 (669)
T ss_pred             hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcc
Confidence            4466777765543  3689999999999999999  5678999999999873

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]

Probab=95.35  E-value=0.0029  Score=71.70  Aligned_cols=138  Identities=21%  Similarity=0.358  Sum_probs=72.6

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCcccccc------CCCCCcCCCCCc-----cccccccCCCCCce
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL------FHWSSWKCPSCR-----ICEICRRTGDPNKF  214 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~------v~~~~W~CpeCk-----~C~VCgk~gd~~~L  214 (864)
                      +|.-|...-.      .+-.-|.-=++-||..|..-..=.+.+      ...+.-+|-.|-     .|.+|+..-.+ .+
T Consensus       276 iC~~C~K~V~------g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d-~i  348 (468)
T KOG1701|consen  276 ICAFCHKTVS------GQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMD-RI  348 (468)
T ss_pred             hhhhcCCccc------CcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHH-HH
Confidence            6777775321      134456666778888776542111000      013455677774     68888765422 33


Q ss_pred             eecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccc--ccccccccc
Q 002926          215 MFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN--YCPVCLKVY  292 (864)
Q Consensus       215 L~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~Kgn--yCpVC~K~Y  292 (864)
                      |  ..|+++||..|..               |+.|..|-...+-    .--..+..+|..|   ||+.-  -|.+|.+..
T Consensus       349 L--rA~GkayHp~CF~---------------Cv~C~r~ldgipF----tvd~~n~v~Cv~d---fh~kfAPrCs~C~~PI  404 (468)
T KOG1701|consen  349 L--RALGKAYHPGCFT---------------CVVCARCLDGIPF----TVDSQNNVYCVPD---FHKKFAPRCSVCGNPI  404 (468)
T ss_pred             H--HhcccccCCCceE---------------EEEeccccCCccc----cccCCCceeeehh---hhhhcCcchhhccCCc
Confidence            3  3689999976654               4444444322111    1111245566655   34432  288888776


Q ss_pred             cCCCCCC-ceeccCCCCcccccc
Q 002926          293 RDSESTP-MVCCDVCQRWVHCQC  314 (864)
Q Consensus       293 ~D~dg~~-MVqCD~C~~WfH~eC  314 (864)
                      ...++.+ .|.=..=++-||.+|
T Consensus       405 ~P~~G~~etvRvvamdr~fHv~C  427 (468)
T KOG1701|consen  405 LPRDGKDETVRVVAMDRDFHVNC  427 (468)
T ss_pred             cCCCCCcceEEEEEccccccccc
Confidence            5544432 232222356677777

>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]

Probab=95.16  E-value=0.014  Score=64.19  Aligned_cols=90  Identities=20%  Similarity=0.419  Sum_probs=55.0

Q ss_pred             ceeecCCCCCcccccccCCCCcCCCCCCccccCCCccc---CCCCC--CCCCCCccccccCccccCCCcccccccccccc
Q 002926          213 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGSN--VPGNGLSVRWFLGYTCCDACGRLFVKGNYCPV  287 (864)
Q Consensus       213 ~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~---~CG~~--~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpV  287 (864)
                      .+.+|-.|.-++|..=...  ....++.|+|.-|..|.   +|...  ........-|.++|           ++.|| .
T Consensus        67 ~agvC~~C~~~CH~~H~lv--eL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNf-----------qG~~C-~  132 (345)
T KOG2752|consen   67 MAGVCYACSLSCHDGHELV--ELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNF-----------QGLFC-K  132 (345)
T ss_pred             hceeEEEeeeeecCCceee--eccccCCcccccccccccccccccccccccccchhhhhhhh-----------cceeE-E
Confidence            5778888888888654442  11235678886544333   23210  11112222343321           44566 6


Q ss_pred             ccccccC---CCCCCceeccCCCCccc-cccCC
Q 002926          288 CLKVYRD---SESTPMVCCDVCQRWVH-CQCDG  316 (864)
Q Consensus       288 C~K~Y~D---~dg~~MVqCD~C~~WfH-~eCd~  316 (864)
                      |.+.|.+   ..++.|+||..|+-||| ..|.+
T Consensus       133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~  165 (345)
T KOG2752|consen  133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ  165 (345)
T ss_pred             ecCCCCCccccccceeeeEEeccchhcccccCc
Confidence            9999977   34688999999999999 66765

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=94.81  E-value=0.051  Score=45.62  Aligned_cols=53  Identities=23%  Similarity=0.333  Sum_probs=39.8

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCC-cccceecCceeeEeee
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDS-RVKTLELGKQGVRFVP  856 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~-~~~~~~~gk~~vr~~~  856 (864)
                      .+|-+|||....++.|+.|+|+.|.. ..++.|.|++. ...+.++-...+|.+|
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~   57 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHP   57 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCC
Confidence            57999999999999999999999988 33599999882 2223334455566554

Domain in plant sequences with possible chromatin-associated functions.

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=93.67  E-value=0.15  Score=40.54  Aligned_cols=42  Identities=14%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             cceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-Ccccceec
Q 002926          805 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL  847 (864)
Q Consensus       805 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~  847 (864)
                      |..+.+.++.|+.|+.|+|..+.. ..++.|.|.| |..+++.+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~   43 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL   43 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence            567888898899999999999984 3349999999 99988764

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=93.50  E-value=0.029  Score=63.00  Aligned_cols=171  Identities=18%  Similarity=0.311  Sum_probs=94.1

Q ss_pred             ceeecCCCCccccccc--cccCccccccCCCCCcCCCCCc------------cccccccCCCCC----ceeecCCCCCcc
Q 002926          163 RMLSCKSCGKKYHRNC--LKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDPN----KFMFCRRCDAAY  224 (864)
Q Consensus       163 eLL~Cd~C~raYH~~C--L~p~~~~~~~v~~~~W~CpeCk------------~C~VCgk~gd~~----~LL~Cd~C~raY  224 (864)
                      .++-|+.|-.+||..|  ++++....  .+...|.|..|.            .| +|.....+.    ..+-+..|..|+
T Consensus        74 ~~~~cd~C~~~~~~ec~~v~~~~~e~--p~~~~~~c~~c~~~~~~~~~~~~l~~-~~~~~~~~~~s~s~~~~~~~~~~~~  150 (345)
T KOG1632|consen   74 LMEQCDLCEDWYHGECWEVGTAEKEA--PKEDPKVCDECKEAQDGMSESDGLSC-VCRQDDSELLSPSFYFGKRGCQFWV  150 (345)
T ss_pred             hhhccccccccccccccccCchhhcC--Cccccccccccchhhhhhhhhcccee-ecccccccccccccccCCccccccc
Confidence            7899999999999999  88766533  346789999996            33 454432211    235677888899


Q ss_pred             cccccCCCCcC-CCCCCccccCCCcccCCC-------------------CCC-CCC-CCcccccc----Ccc------cc
Q 002926          225 HCYCQHPPHKN-VSSGPYLCPKHTKCHSCG-------------------SNV-PGN-GLSVRWFL----GYT------CC  272 (864)
Q Consensus       225 H~~CL~Ppl~s-vP~g~W~CP~C~~C~~CG-------------------~~~-pgk-~ls~rW~~----~~~------lC  272 (864)
                      |..|+..-... .-.....|+.|..=..-+                   ... ... ..+..|.+    .+.      .|
T Consensus       151 ~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (345)
T KOG1632|consen  151 KLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGSKSKTRKKRNRESELEEKKRKHFSNEELTEPAREPVD  230 (345)
T ss_pred             cchhhhhhhhhhhhcccchhhhcccccccccccccccccccccceecccCcccccchhhhhhhhhccCcccccccccCCC
Confidence            98888842221 112234444443110100                   000 000 00001110    000      22


Q ss_pred             CCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChH--HHhhhccCCCCceeCCCCCCCC
Q 002926          273 DACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDE--KYLQFQVDGNLQYRCPTCRGEC  342 (864)
Q Consensus       273 ~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE--~y~~~gid~~~~Y~CptCr~~~  342 (864)
                      ..+.. ...+.+|..|+-.|...  .-|++|+.|..|||..|+.+...  .|...   .+..|+|+.|....
T Consensus       231 ~~~~~-~~~~~~~~~cg~~~~~~--~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~---~~~~~~c~~~~~~~  296 (345)
T KOG1632|consen  231 ESEAP-DYSKLICDPCGLSDANK--KFEICCDLCESWFHGDCVQIFEARKRLNEI---RNEVYKCPHCTVLK  296 (345)
T ss_pred             ccccc-ccccccccccCcchHHH--HHHHHHHHHHHHhcccccccccchhhhhhh---hccceecCceeecc
Confidence            11111 11223466676554332  34788999999999999996433  23221   23579999998643

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []

Probab=92.95  E-value=0.11  Score=60.07  Aligned_cols=62  Identities=24%  Similarity=0.690  Sum_probs=41.5

Q ss_pred             cccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhcc-------CCCCceeCCCCCCC
Q 002926          270 TCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQV-------DGNLQYRCPTCRGE  341 (864)
Q Consensus       270 ~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gi-------d~~~~Y~CptCr~~  341 (864)
                      .+|..|        .|.+|.+...+.++-.||.||.|.+|-|.+|.=-  ..+...|.       ..+..|+|..|-..
T Consensus       124 gFC~~C--------~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr--~~~i~~G~s~~g~~g~~d~~f~C~~C~~~  192 (446)
T PF07227_consen  124 GFCRRC--------MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR--HELIGTGPSVKGSIGTLDMQFHCRACGKT  192 (446)
T ss_pred             CccccC--------CccccCCcccCCCCeeEEeccCCCceehhhhhcc--cccccCCccCCCCCccCceEEEccCCCCh
Confidence            356666        4888877433445567999999999999999542  11222221       13669999999864

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=92.90  E-value=0.055  Score=54.31  Aligned_cols=24  Identities=29%  Similarity=0.764  Sum_probs=20.7

Q ss_pred             cccccccccCccccccCCCCCcCCCCC
Q 002926          173 KYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       173 aYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      +||+.||.|++..   ++.+.|.|+.|
T Consensus         1 g~H~~CL~Ppl~~---~P~g~W~Cp~C   24 (148)
T cd04718           1 GFHLCCLRPPLKE---VPEGDWICPFC   24 (148)
T ss_pred             CcccccCCCCCCC---CCCCCcCCCCC
Confidence            5999999998864   45899999999

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=92.15  E-value=0.029  Score=43.68  Aligned_cols=33  Identities=33%  Similarity=0.822  Sum_probs=18.7

Q ss_pred             CceeecCCCCCcccccccCCCCcCCCCC-CccccCC
Q 002926          212 NKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKH  246 (864)
Q Consensus       212 ~~LL~Cd~C~raYH~~CL~Ppl~svP~g-~W~CP~C  246 (864)
                      +.|++|+.|....|..|.+.  ..++.+ .|+|..|
T Consensus         2 n~ll~C~~C~v~VH~~CYGv--~~~~~~~~W~C~~C   35 (36)
T PF13831_consen    2 NPLLFCDNCNVAVHQSCYGV--SEVPDGDDWLCDRC   35 (36)
T ss_dssp             CEEEE-SSS--EEEHHHHT---SS--SS-----HHH
T ss_pred             CceEEeCCCCCcCChhhCCc--ccCCCCCcEECCcC
Confidence            47999999999999999994  444444 6999775

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=92.13  E-value=0.04  Score=71.34  Aligned_cols=55  Identities=31%  Similarity=0.729  Sum_probs=44.7

Q ss_pred             cCCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          138 QGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       138 ~~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ...+.....|.+|...+     ..+.|+.|+.|.+.||..|+.+...   .++.+.|+|+.|.
T Consensus      1102 w~~s~~~~~c~~cr~k~-----~~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1102 WDRSAVNALCKVCRRKK-----QDEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCR 1156 (1404)
T ss_pred             hccccchhhhhhhhhcc-----cchhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccc
Confidence            34556777999999754     2358999999999999999999764   3457899999997

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=89.87  E-value=0.071  Score=41.54  Aligned_cols=33  Identities=24%  Similarity=0.672  Sum_probs=18.6

Q ss_pred             ceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          163 RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       163 eLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      +||.|+.|.-..|..|.+....+.    ...|.|..|
T Consensus         3 ~ll~C~~C~v~VH~~CYGv~~~~~----~~~W~C~~C   35 (36)
T PF13831_consen    3 PLLFCDNCNVAVHQSCYGVSEVPD----GDDWLCDRC   35 (36)
T ss_dssp             EEEE-SSS--EEEHHHHT-SS--S----S-----HHH
T ss_pred             ceEEeCCCCCcCChhhCCcccCCC----CCcEECCcC
Confidence            899999999999999999865432    236999876

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=87.92  E-value=0.8  Score=44.82  Aligned_cols=45  Identities=22%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccce
Q 002926          800 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL  845 (864)
Q Consensus       800 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~  845 (864)
                      |.+-||+||---|.+++-.+-|+|+-= .+-.++.|.||||...+|
T Consensus         1 ~~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~~~v   45 (122)
T PF09038_consen    1 GSSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYECRV   45 (122)
T ss_dssp             ---STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-EEEE
T ss_pred             CCcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcccee
Confidence            678899999999954444489988773 455579999999987644

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.63  E-value=0.33  Score=56.07  Aligned_cols=53  Identities=23%  Similarity=0.617  Sum_probs=36.9

Q ss_pred             CCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccc
Q 002926          139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI  204 (864)
Q Consensus       139 ~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~V  204 (864)
                      ......+.|.+|...-    +..-..|.=..|..+||-.|+..|..         -.||-|++|..
T Consensus       170 ~~~tELPTCpVCLERM----D~s~~gi~t~~c~Hsfh~~cl~~w~~---------~scpvcR~~q~  222 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERM----DSSTTGILTILCNHSFHCSCLMKWWD---------SSCPVCRYCQS  222 (493)
T ss_pred             CCcccCCCcchhHhhc----CccccceeeeecccccchHHHhhccc---------CcChhhhhhcC
Confidence            3445678999999643    33346677789999999999997543         34666655543

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]

Probab=87.21  E-value=0.41  Score=55.03  Aligned_cols=10  Identities=50%  Similarity=1.155  Sum_probs=5.1

Q ss_pred             CCcccccccc
Q 002926          170 CGKKYHRNCL  179 (864)
Q Consensus       170 C~raYH~~CL  179 (864)
                      |+++||+.|.
T Consensus       352 ~GkayHp~CF  361 (468)
T KOG1701|consen  352 LGKAYHPGCF  361 (468)
T ss_pred             cccccCCCce
Confidence            3455665443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=85.39  E-value=0.28  Score=43.20  Aligned_cols=54  Identities=30%  Similarity=0.688  Sum_probs=21.5

Q ss_pred             ccccccccccccCcccCCceeecC--CCCccccccccccCcccccc----CCCCCcCCCCCc
Q 002926          145 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDL----FHWSSWKCPSCR  200 (864)
Q Consensus       145 d~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~----v~~~~W~CpeCk  200 (864)
                      ..|.||...-..  ......+.|.  .|+..||..||..|....+.    +..-.+.||.|.
T Consensus         3 ~~C~IC~~~~~~--~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~   62 (70)
T PF11793_consen    3 LECGICYSYRLD--DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCS   62 (70)
T ss_dssp             -S-SSS--SS-T--T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-
T ss_pred             CCCCcCCcEecC--CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCC
Confidence            479999975321  1122468997  99999999999988653221    112245688774

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=84.56  E-value=1  Score=55.56  Aligned_cols=65  Identities=34%  Similarity=0.937  Sum_probs=49.6

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc----------cccccccCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR----------ICEICRRTGDP  211 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk----------~C~VCgk~gd~  211 (864)
                      .....|.||...    ......+-.|..|...||+.|+.-|...+.......|+||.|.          .| .|++-.++
T Consensus       189 ~~~yeCmIC~e~----I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~C-~CGk~~nP  263 (950)
T KOG1952|consen  189 NRKYECMICTER----IKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYLC-FCGKVKNP  263 (950)
T ss_pred             cCceEEEEeeee----ccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccce-ecCcccCC
Confidence            355689999863    2334488999999999999999999876554445799999997          46 67775554

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=83.68  E-value=0.98  Score=42.13  Aligned_cols=72  Identities=26%  Similarity=0.450  Sum_probs=46.2

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCcccc------------ccCCCCCcCCCCCccccccccCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR------------DLFHWSSWKCPSCRICEICRRTGDPNK  213 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~------------~~v~~~~W~CpeCk~C~VCgk~gd~~~  213 (864)
                      .|.+|...|        ..+.-..-+++.|..|.-..+...            ..+....|.    ..|.+|+...  .-
T Consensus         2 ~C~lC~~~~--------Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~----~~C~iC~~~~--G~   67 (110)
T PF13832_consen    2 SCVLCPKRG--------GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK----LKCSICGKSG--GA   67 (110)
T ss_pred             ccEeCCCCC--------CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC----CcCcCCCCCC--ce
Confidence            588998754        233344468899999987643210            001111111    2678888763  26


Q ss_pred             eeecCC--CCCcccccccCC
Q 002926          214 FMFCRR--CDAAYHCYCQHP  231 (864)
Q Consensus       214 LL~Cd~--C~raYH~~CL~P  231 (864)
                      .+.|..  |..+||..|...
T Consensus        68 ~i~C~~~~C~~~fH~~CA~~   87 (110)
T PF13832_consen   68 CIKCSHPGCSTAFHPTCARK   87 (110)
T ss_pred             eEEcCCCCCCcCCCHHHHHH
Confidence            899998  999999999874

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []

Probab=83.17  E-value=0.83  Score=53.00  Aligned_cols=37  Identities=27%  Similarity=0.636  Sum_probs=30.0

Q ss_pred             cCCCCCccccccccCCCC---CceeecCCCCCcccccccCC
Q 002926          194 WKCPSCRICEICRRTGDP---NKFMFCRRCDAAYHCYCQHP  231 (864)
Q Consensus       194 W~CpeCk~C~VCgk~gd~---~~LL~Cd~C~raYH~~CL~P  231 (864)
                      =+|..| .|.+|.+-...   -.++.|+.|+.|-|..|.--
T Consensus       124 gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr  163 (446)
T PF07227_consen  124 GFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR  163 (446)
T ss_pred             CccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhcc
Confidence            469999 99999875332   25899999999999999863

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=81.78  E-value=0.57  Score=37.01  Aligned_cols=43  Identities=37%  Similarity=0.864  Sum_probs=28.7

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR  339 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr  339 (864)
                      .|+||...+.+.+  .++... |...||..|+.   + |.+.      .+.||.||
T Consensus         2 ~C~IC~~~~~~~~--~~~~l~-C~H~fh~~Ci~---~-~~~~------~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGE--KVVKLP-CGHVFHRSCIK---E-WLKR------NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTS--CEEEET-TSEEEEHHHHH---H-HHHH------SSB-TTTH
T ss_pred             CCcCCChhhcCCC--eEEEcc-CCCeeCHHHHH---H-HHHh------CCcCCccC
Confidence            4889998886633  345555 99999999954   2 3221      35999996

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=80.98  E-value=0.39  Score=37.95  Aligned_cols=43  Identities=28%  Similarity=0.890  Sum_probs=28.5

Q ss_pred             ccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       145 d~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      +.|.||...-.    ..+.++... |+..||..|+..+...       ...||.|
T Consensus         1 d~C~IC~~~~~----~~~~~~~l~-C~H~fh~~Ci~~~~~~-------~~~CP~C   43 (44)
T PF13639_consen    1 DECPICLEEFE----DGEKVVKLP-CGHVFHRSCIKEWLKR-------NNSCPVC   43 (44)
T ss_dssp             -CETTTTCBHH----TTSCEEEET-TSEEEEHHHHHHHHHH-------SSB-TTT
T ss_pred             CCCcCCChhhc----CCCeEEEcc-CCCeeCHHHHHHHHHh-------CCcCCcc
Confidence            36899987532    123555555 9999999999987753       1377776

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	864
2ysm_A	111	Solution Structure Of The First And Second Phd Doma		1e-07
2kwj_A	114	Solution Structures Of The Double Phd Fingers Of Hu		4e-07
2e6r_A	92	Solution Structure Of The Phd Domain In Smcy Protei		2e-05
2ln0_A	110	Structure Of Moz Length = 110		4e-05
3v43_A	112	Crystal Structure Of Moz Length = 112		5e-05
1f62_A	51	Wstf-Phd Length = 51		5e-04

>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 167 CKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHC 226
           C +CG+ YH  CL            + W+CP C++C+ C+++G+ +K + C  CD  YH 
Sbjct: 25  CTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81
Query: 227 YCQHPPHKNVSSGPYLC 243
           +C  P  K+V +  + C
Sbjct: 82  FCLQPVMKSVPTNGWKC 98

>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 147 CRLCFVGENEGCERAR--RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
           C  C  G N   +  R   ++SC  CG+  H  CL+      +      W+C  C+ C +
Sbjct: 4   CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCIL 63
Query: 205 CRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLC 243
           C  + + ++ +FC  CD  YH YC +PP      G + C
Sbjct: 64  CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSC 102

>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
           IC++C R  + +K +FC  CD  YH +C  PP   +  G + CPK
Sbjct: 18  ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPK 62

>pdb|2LN0|A Chain A, Structure Of Moz Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 159 ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFC 217
           ++   ++SC  CG   H +CLK   +         W+C  C+ C  CR  G + +  +FC
Sbjct: 19  KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 78
Query: 218 RRCDAAYHCYCQHPPHKNVSSGPYLC 243
             CD  +H  C  PP   +  G ++C
Sbjct: 79  DSCDRGFHMECCDPPLTRMPKGMWIC 104

>pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 159 ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFC 217
           ++   ++SC  CG   H +CLK   +         W+C  C+ C  CR  G + +  +FC
Sbjct: 21  KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 80
Query: 218 RRCDAAYHCYCQHPPHKNVSSGPYLC 243
             CD  +H  C  PP   +  G ++C
Sbjct: 81  DSCDRGFHMECCDPPLTRMPKGMWIC 106

>pdb|1F62|A Chain A, Wstf-Phd Length = 51

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 202 CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCP 244
           C++CR+ G+ +K + C  C+ A+H +C  P    V  G + CP
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCP 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	864
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	2e-28
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	9e-11
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	2e-07
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	3e-28
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	4e-04
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	5e-25
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	5e-07
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	3e-20
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	5e-04
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	3e-15
1we9_A	64	PHD finger family protein; structural genomics, PH	2e-12
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	4e-12
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	1e-10
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	8e-10
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	1e-09
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	2e-09
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-08
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	2e-08
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	4e-08
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	5e-08
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	6e-08
1wem_A	76	Death associated transcription factor 1; structura	6e-08
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	7e-08
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	9e-06
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	1e-07
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	3e-07
1wee_A	72	PHD finger family protein; structural genomics, PH	3e-07
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	3e-07
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	4e-07
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	4e-07
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	4e-07
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	5e-07
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	4e-06
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	4e-06
2yt5_A	66	Metal-response element-binding transcription facto	5e-06
2yt5_A	66	Metal-response element-binding transcription facto	4e-05
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	7e-06
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	8e-06
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	4e-05
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	5e-05
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	5e-05
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	7e-05
3kv5_D	488	JMJC domain-containing histone demethylation prote	8e-05
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	9e-05
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	1e-04
1wew_A	78	DNA-binding family protein; structural genomics, P	1e-04
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-04
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	2e-04
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-04
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	8e-04
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	8e-04
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	9e-04

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score =  108 bits (272), Expect = 2e-28
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPS 198
              ++   C +C     +          C +CG+ YH  CL            + W+CP 
Sbjct: 2   SSGSSGANCAVC-----DSPGDLLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPE 53

Query: 199 CRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSN 255
           C++C+ C+++G+ +K + C  CD  YH +C  P  K+V +  + C     C S  S+
Sbjct: 54  CKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPSS 110

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 58.8 bits (142), Expect = 9e-11
 Identities = 25/146 (17%), Positives = 38/146 (26%), Gaps = 45/146 (30%)

Query: 194 WKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCG 253
               S   C +C   GD     FC  C   YH  C       +    + CP+   C +C 
Sbjct: 2   SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCK 61

Query: 254 SNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQ 313
                                                  +  E + M+ CD C +  H  
Sbjct: 62  ---------------------------------------QSGEDSKMLVCDTCDKGYHTF 82

Query: 314 CDGISDEKYLQFQVDGNLQYRCPTCR 339
           C        ++        ++C  CR
Sbjct: 83  CLQ----PVMKSVPTNG--WKCKNCR 102

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICE 203
             +C+ C     +      +ML C +C K YH  CL+   ++      + WKC +CRIC 
Sbjct: 54  CKVCQNCKQSGEDS-----KMLVCDTCDKGYHTFCLQPVMKS---VPTNGWKCKNCRICI 105

Query: 204 ICRRTG 209
               +G
Sbjct: 106 SGPSSG 111

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score =  108 bits (272), Expect = 3e-28
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 147 CRLCFVGE--NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEI 204
           C  C  G   N+   R   ++SC  CG+  H  CL+      +      W+C  C+ C +
Sbjct: 4   CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCIL 63

Query: 205 CRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGS 254
           C  + + ++ +FC  CD  YH YC +PP      G + C    +     +
Sbjct: 64  CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKA 113

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 199
           Q      C LC   EN+      ++L C  C + YH  CL             SW C  C
Sbjct: 54  QCIECKSCILCGTSENDD-----QLLFCDDCDRGYHMYCLNPPVAEPPE---GSWSCHLC 105

Query: 200 RICEICRRT 208
                 + +
Sbjct: 106 WELLKEKAS 114

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 99.4 bits (247), Expect = 5e-25
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 144 NVMCRLCFVGENEGCE-RARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 202
             +C  C   + +  E +   ++SC  CG   H +CLK   +         W+C  C+ C
Sbjct: 5   IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64

Query: 203 EICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
             CR  G   +  +FC  CD  +H  C  PP   +  G ++C  
Sbjct: 65  SSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQI 108

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 196 CPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSC 252
           C  C   +   R   P + + C  C  + H  C     +    V +  + C +   C SC
Sbjct: 8   CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 67

Query: 253 GSNVPGNGLSVRWFLGYTCCDACGRLF 279
                     +        CD+C R F
Sbjct: 68  RDQGKNADNML-------FCDSCDRGF 87

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 85.4 bits (211), Expect = 3e-20
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS 251
           SS +     IC++C R  + +K +FC  CD  YH +C  PP   +  G + CPK      
Sbjct: 9   SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68

Query: 252 CGSNVPGNGLSVRWFLGYTCCDAC 275
                       +    Y+     
Sbjct: 69  KQPPEAFG--FEQATQEYSLSGPS 90

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 129 ASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL 188
            S   +G    Q   + +C++C  G+ +      ++L C  C   YH  CL         
Sbjct: 1   GSSGSSGHSSAQFIDSYICQVCSRGDEDD-----KLLFCDGCDDNYHIFCLLPPLPEIPR 55

Query: 189 FHWSSWKCPSCRICEICRRT 208
                W+CP C + E  +  
Sbjct: 56  ---GIWRCPKCILAECKQPP 72

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183

 Score = 73.9 bits (180), Expect = 3e-15
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 282 GNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPTCR 339
           GN+CP+C K Y D +  + M+ C  C RWVH +C+ +SDE Y +   +  ++ Y C  C 
Sbjct: 2   GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 61

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 281 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
               C  C + Y   E    +CCD+C+ W H +C  I+  +    +     QY+CP+C 
Sbjct: 5   SSGQCGACGESYAADE--FWICCDLCEMWFHGKCVKITPARAEHIK-----QYKCPSCS 56

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226

 Score = 65.5 bits (159), Expect = 4e-12
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 127 ATASKDIAGEEQGQSNTNVMCRLCFVGENEGCER--ARRMLSCKSCGKKYHRNCLKNWAQ 184
              ++++        ++   CR+ FV E    ER      +      +K   +C      
Sbjct: 108 TRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDD 167

Query: 185 NRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLC 243
                      C  C  C +C    DP+K + C  CD A+H YC  PP  +V S   + C
Sbjct: 168 VN-------RLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC 219

Query: 244 PK 245
           P+
Sbjct: 220 PE 221

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 202 CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSC 252
           C++CR+ G+ +K + C  C+ A+H +C  P    V  G + CP    C   
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCP---ACQPA 50

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 194 WKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 245
             C  C  C +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 14  RLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 65

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 194 WKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 245
             C  C  C +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 22  RLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 73

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 285 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 342
           C  C     D +   ++C   CQ+W H +C G+++  Y     + +  + C  C    
Sbjct: 6   CGACRSEVNDDQD-AILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 53.0 bits (127), Expect = 6e-09
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS 251
                 S  IC +C++ GD    + C +C+  +H  C  P  ++V    + C     CH 
Sbjct: 18  FGTLDDSATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCS---LCHV 71

Query: 252 C 252
            
Sbjct: 72  L 72

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 8e-09
 Identities = 78/592 (13%), Positives = 159/592 (26%), Gaps = 184/592 (31%)

Query: 115 EDYARRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSC-----KS 169
           + +   F+   V    K I  +E+             +   +      R+        + 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDH---------IIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 170 CGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICR-RTGDPNKFMFCRRCDAAYHCYC 228
             +K+    L+    N   F  S  K          R  +     ++  R  D  Y+   
Sbjct: 78  MVQKFVEEVLR---INYK-FLMSPIK-------TEQRQPSMMTRMYIEQR--DRLYNDNQ 124

Query: 229 QHPPHKNVSSGPYLCPKHTKCHSCGSNV-PGNGLSVRWFLGYTCCDACGRLFVKGNYCPV 287
               + NVS        + K       + P   + +   LG       G    K      
Sbjct: 125 VFAKY-NVSRLQ----PYLKLRQALLELRPAKNVLIDGVLG------SG----KT----- 164

Query: 288 CL--KVYRDSESTPMVCCDVCQRWV---HCQCDG--ISDEKYLQFQVDGNLQYRCPTCRG 340
            +   V    +    +   +   W+   +C      +   + L +Q+D N   R      
Sbjct: 165 WVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 341 ECYQVRDLEDAVRELWRRK----------DMADKDLI---------------ASLRAAAG 375
              ++  ++  +R L + K          ++ +                     +     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 376 LPTEDEIFSI---SPYSDDEENGPVVLKNEFGRSLKLSLKG----VVDKSP-------KK 421
             T   I         + DE      +K+   + L    +     V+  +P       + 
Sbjct: 283 AATTTHISLDHHSMTLTPDE------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 422 VKEHGKKWLNKKYPRKKGY----QMPLNSKPEPDQSFEGYHD--VHSYGNSFGDDTQSPK 475
           +++    W N K+          +  LN   EP +  + +    V      F        
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSV------FPPSA---- 385

Query: 476 NEGLDIPSSVAGIV---------------SHT---------EGVCSISQPGILKHKYVDE 511
                IP+ +  ++                H          E   SI  P I    Y++ 
Sbjct: 386 ----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSI----YLEL 435

Query: 512 VMVSDDDK------ISRVKF-KTSKPHDLDSGEDD-------GKHVSKS----KTIKAKK 553
            +  +++       +      KT    DL     D       G H+       +    + 
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 554 LVINLG--ARKINVTNSPRSDASSCQRE-QDLT------TSNGIEDPSLQRM 596
           + ++     +KI   ++  + + S     Q L         N   DP  +R+
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---DPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 6e-07
 Identities = 83/534 (15%), Positives = 137/534 (25%), Gaps = 178/534 (33%)

Query: 15  CFCTLGFPRSVQSSKARNDFVHDVVLVEEFLKDPLGRFRV------SKEESTVQVLVPEV 68
           C      P+S+ S +       D +++    KD +           SK+E  VQ  V EV
Sbjct: 35  CKDVQDMPKSILSKE-----EIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 69  ----------------PQPPPPA---VAVVDGAGLDAAEEAAAAVSAQTK----RVALQR 105
                            QP       +   D    D    A   VS        R AL  
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 106 ----------------KAAAAMVAAEDYA--RRFESG--YVATASKDIAGE--EQGQS-N 142
                           K   A+     Y    + +    ++   + +      E  Q   
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 143 TNVMCRLCFVGE---------NEGCERARRMLSCKSCGKKYHRNCLKNWAQN---RDLFH 190
             +        +         +      RR+L       K + NCL          ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYENCL------LVLLNVQN 255

Query: 191 WSSWKC--PSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 248
             +W     SC+I    R     +                 H    + S    L P   K
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT---------HISLDHHSMT--LTPDEVK 304

Query: 249 CHSCGSNVPGNGLSVRWFLGYTCCD----ACGRLFVKGNYCPVCLKV----YRDSESTPM 300
                       L +++ L     D             N  P  L +     RD  +T  
Sbjct: 305 -----------SLLLKY-LDCRPQDLPREVL-----TTN--PRRLSIIAESIRDGLATW- 344

Query: 301 VCCDVCQRWVHCQCDGISD--EKYLQFQVDGNLQYRCPTCRGECYQVRDL----EDA--- 351
                   W H  CD ++   E  L        +        + +    L      A   
Sbjct: 345 ------DNWKHVNCDKLTTIIESSLNVLEPAEYR--------KMFD--RLSVFPPSAHIP 388

Query: 352 --VRE-LWRRKDMADKDLIASLRAAAGLPTED-EIFSISPYSDDEENGPVVLKNEFGRSL 407
             +   +W     +D  ++ +      L  +  +  +IS                   S+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------------SI 431

Query: 408 KLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQ---SFEGYH 458
            L LK    K   +   H +  ++  Y   K +       P  DQ   S  G+H
Sbjct: 432 YLELKV---KLENEYALH-RSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 52/377 (13%), Positives = 100/377 (26%), Gaps = 113/377 (29%)

Query: 502 GILKHKYVDEVMVSDDDKISRVKFKTSKPHDLDSG--EDDGKHVSKSKTIKAKKLVINLG 559
           G  +++Y D + V +D       F      + D    +D  K +   + I          
Sbjct: 12  GEHQYQYKDILSVFEDA------FVD----NFDCKDVQDMPKSILSKEEID--------- 52

Query: 560 ARKINVTNSPRSDASSCQREQDLTTSNG-------IEDPSLQRMNSKFVLDRHDGSSKLG 612
               ++  S     S   R      S         +E+  + R+N KF++       +  
Sbjct: 53  ----HIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQP 105

Query: 613 DGDRVDHSSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGK 672
                 +  Q   L                Q  +  N  VSR         +    L   
Sbjct: 106 SMMTRMYIEQRDRLY------------NDNQVFAKYN--VSR--------LQPYLKLRQA 143

Query: 673 RNIDRSRAAVSRVG---------EVAALRGDRKQLESRPNA-----SRESNDDTSVLQSL 718
               R    V   G          +       K              +  N   +VL+ L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 719 PKDSKPPLRLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTEKTLFNEDEDAA 778
            K     L  +   PN  +++   S  +     I+    +R          L        
Sbjct: 203 QK-----LLYQI-DPNWTSRSDHSSNIKLRIHSIQ-AELRR----------LLKS----- 240

Query: 779 QSNQDSLMSEIMD---ANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSI 835
           +  ++ L+  ++                +  ++ +  +         VTD +   +T  I
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFN---LSCKILLTTR-FKQ-----VTDFLSAATTTHI 289

Query: 836 TLDDSRV-----KTLEL 847
           +LD   +     +   L
Sbjct: 290 SLDHHSMTLTPDEVKSL 306

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 119 RRFESGYVATASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNC 178
           R F+  Y          +   + N  + C +CF    +G E          C  K H  C
Sbjct: 283 RMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVC 342

Query: 179 LKNWAQ----NRDLFHWSSWKCPSCR 200
           L+ W +     +     S  +CP C+
Sbjct: 343 LEEWFKTLMDGKTFLEVSFGQCPFCK 368

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 194 WKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPY-LCPK 245
            KC SC  C +C    +PN  + C  C+ AYH YC +PP   V    Y  CP 
Sbjct: 22  KKCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 284 YCPVCLKVYRDSESTPMVCCDV-CQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            C +C     D +    + C+  CQ+W H  C G+++  Y     + +  + C TC 
Sbjct: 10  PCGICTNEVNDDQ--DAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 198 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVP 257
           S  IC +C++ GD    + C +C+  +H  C  P  ++V    + C              
Sbjct: 1   SATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC-HVLPDLKEED 56

Query: 258 GNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDV 305
           G+                     K     + L  +        +  D 
Sbjct: 57  GSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQLATDS 104

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
            S++      CE+C++ G+    + C  C  AYH  C  P  +    G + CP 
Sbjct: 4   GSYETDHQDYCEVCQQGGE---IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPH 54

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76

 Score = 49.5 bits (118), Expect = 6e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC +C + + +     M+CCD C+ W H  C GIS+ +    + +G   Y CP C 
Sbjct: 18  YC-ICRQPHNNR---FMICCDRCEEWFHGDCVGISEARGRLLERNGE-DYICPNCT 68

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 341
            CP C K    S   PM+ CD C  W H  C GI             +Q+ CP C  +
Sbjct: 20  ICPGCNKPDDGS---PMIGCDDCDDWYHWPCVGIMAAP------PEEMQWFCPKCANK 68

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 13/46 (28%), Positives = 17/46 (36%)

Query: 200 RICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
            IC  C +  D +  + C  CD  YH  C            + CPK
Sbjct: 19  WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK 64

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC +C + Y  + +  M+ C +CQ W H  C GI +E  +         Y CP C 
Sbjct: 14  YC-LCRQPY--NVNHFMIECGLCQDWFHGSCVGIEEENAVDID-----IYHCPDCE 61

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC VC   Y  +    M+ CD C+ W H  C G+ +E+           Y CP C 
Sbjct: 12  YC-VCRLPYDVTR--FMIECDACKDWFHGSCVGVEEEEAPDID-----IYHCPNCE 59

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            C    K   D +   M+ CD C  W H +C GI++   L        ++ C  C 
Sbjct: 18  DCKCGTK---DDDGERMLACDGCGVWHHTRCIGINNADALPS------KFLCFRCI 64

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
            C +CR++G     + C  C   YH  C  PP K +  G ++CP+
Sbjct: 7   FCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPR 48

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 340
            C  C+K +      PM+ C+ C  W+H  C  I      +        + C  CR 
Sbjct: 6   TC-FCMKPFAGR---PMIECNECHTWIHLSCAKIRKSNVPE-------VFVCQKCRD 51

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            C  C+K +      PM+ C+ C  W+H  C  I      +        + C  CR
Sbjct: 21  TC-FCMKPF---AGRPMIECNECHTWIHLSCAKIRKSNVPE-------VFVCQKCR 65

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
            C +CR++G     + C  C   YH  C  PP K +  G ++CP+
Sbjct: 11  FCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPR 52

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 197 PSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSC 252
                C +C+  G+    + C  C ++YH +C +PP   + +G +LCP+ T C + 
Sbjct: 7   HHMEFCRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT-CPAL 58

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 5/59 (8%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 342
                   +        + CD CQ W H  C G+   +Y         ++ CP C    
Sbjct: 42  LMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEY-----YLYEKFFCPKCVPHT 95

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 199 CRICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
             +C IC      + N  +FC  C+ A H  C   P   +  G +LC  
Sbjct: 16  DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRH 62

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 201 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQHPPHKNV---SSGPYLCPK 245
           +C IC+      PN+ + C +C   YH  C  P   +    S   +LC +
Sbjct: 8   VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQ 57

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPS 198
           G S ++ +C +C        E    M+ C  CG+ YH+ C      +  +     W C  
Sbjct: 1   GSSGSSGVCTICQEEY---SEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQ 57

Query: 199 CRICEICRR 207
           C      +R
Sbjct: 58  CVFATTTKR 66

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
            C +CR  G+    + C  C  A+H  C  PP + + SG + C  
Sbjct: 10  ECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSS 51

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 285 CPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 338
              C +  +D      V CD  C  W H  C G+S E         N  Y C  C
Sbjct: 5   AQNCQRPCKDKV--DWVQCDGGCDEWFHQVCVGVSPEM------AENEDYICINC 51

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 202 CEICRRT--GDPNKFMFCRRCDAAYHCYCQHPP----HKNVSSGPYLCPKHTKC 249
           C +CR+      N+ + C+ C   YH  C  P       N     + C + T+ 
Sbjct: 19  CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 129 ASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL 188
            S   +G +       + C +C            +++ C+ C   YH++C K    ++++
Sbjct: 1   GSSGSSGADDFAMEMGLACVVCRQMT---VASGNQLVECQECHNLYHQDCHKPQVTDKEV 57

Query: 189 FHWS-SWKCPSCRICEICRRTGDPNK 213
                 W C  C          +   
Sbjct: 58  NDPRLVWYCARCTRQMKRMAQKNQKS 83

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 12/55 (21%)

Query: 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200
           +C +C     +G        SC++CG + H  C+  + Q+      +  +CP C 
Sbjct: 182 ICNICHSLLIQG-------QSCETCGIRMHLPCVAKYFQSN-----AEPRCPHCN 224

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 201 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
           +C IC      + N  +FC  C+ A H  C   P+  +  G +LC  
Sbjct: 27  VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRH 71

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 197 PSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNV 256
           P+   C +C+  G+    + C +C   +H  C  P   N  SG ++C             
Sbjct: 2   PNEDWCAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEY 58

Query: 257 PGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTP 299
             +  S       T          K     + L +Y    S  
Sbjct: 59  DCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLA 101

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488

 Score = 45.0 bits (105), Expect = 8e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 343
           YC VC + Y    +  M+ CD+C+ W H  C G+ +   +         Y CP C     
Sbjct: 39  YC-VCRQPY--DVNRFMIECDICKDWFHGSCVGVEEHHAVDID-----LYHCPNCAVLHG 90

Query: 344 QVRDLEDAVRELWRRKDMAD 363
                +          ++ D
Sbjct: 91  SSLMKKRRNWHRHDYTEIDD 110

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 294 DSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
              +  M+ C+   CQ W H  C  I D+     +V     + C  CR
Sbjct: 18  TMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPV--FYCELCR 63

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 18/111 (16%)

Query: 157 GCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKC--------------PSCRIC 202
           G   +  ++SC +CG++ +     +  ++  L       C                   C
Sbjct: 1   GPLGSMGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQC 60

Query: 203 EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT-KCHSC 252
             C   G+    + C  C  A+   C             +   +   C+ C
Sbjct: 61  RWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 294 DSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVR 346
             E+  M+ C+   C  W H  C  +  +K +         + C  CR       
Sbjct: 24  SLETDSMIQCEDPRCHVWQHVGCVILP-DKPMDGNPPLPESFYCEICRLTSGPSS 77

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 166 SCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200
           SC++CG + H  C+  + Q+      +  +CP C 
Sbjct: 30  SCETCGIRMHLPCVAKYFQSN-----AEPRCPHCN 59

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 343
           YC +C   Y    +  M+ CD+CQ W H  C G+ +EK           Y CP C     
Sbjct: 7   YC-LCRLPY--DVTRFMIECDMCQDWFHGSCVGVEEEKAADID-----LYHCPNCEVLHG 58

Query: 344 QVRDLEDAVRELWRRKDMADKD 365
                +                
Sbjct: 59  PSIMKKRRGSSKGHDTHKGKPV 80

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 29/195 (14%), Positives = 40/195 (20%), Gaps = 42/195 (21%)

Query: 150 CFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG 209
           C       C+          C    H  CL N             +      C  CR   
Sbjct: 188 CQKVCPTICKSHGCTAEGLCC----HSECLGN-----------CSQPDDPTKCVACRNFY 232

Query: 210 DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGY 269
              +            C    PP          C   + C                    
Sbjct: 233 LDGR------------CVETCPPPYYHFQDWR-CVNFSFCQDLHHKCK-----------N 268

Query: 270 TCCDACGRLFVKGNYC-PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVD 328
           +    C +  +  N C P C   Y  + S   + C  C       C  +  EK +     
Sbjct: 269 SRRQGCHQYVIHNNKCIPECPSGYTMNSSN--LLCTPCLGPCPKVCHLLEGEKTIDSVTS 326

Query: 329 GNLQYRCPTCRGECY 343
                 C    G   
Sbjct: 327 AQELRGCTVINGSLI 341

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 18/105 (17%)

Query: 163 RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKC--------------PSCRICEICRRT 208
            ++SC +CG++ +     +  ++  L       C                   C  C   
Sbjct: 13  GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG 72

Query: 209 GDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT-KCHSC 252
           G+    + C  C  A+   C             +   +   C+ C
Sbjct: 73  GN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 20/211 (9%), Positives = 39/211 (18%), Gaps = 19/211 (9%)

Query: 140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN---WAQNRDLFHWSSWKC 196
             + N  C         G  + +          ++   C  +         +        
Sbjct: 148 NKDDNEECGDI----CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTA 203

Query: 197 PSCRICEICRRTGD-PNKFMFCRRCDAAYH---CYCQHPPHKNVSSGPYLCPKHTKCHSC 252
                   C      P+    C  C   Y    C    PP        + C   + C   
Sbjct: 204 EGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPY-YHFQDWRCVNFSFCQDL 262

Query: 253 GSNVPGNGLSVRW---FLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRW 309
                 +              C   C   +   +   +C            +        
Sbjct: 263 HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEK--- 319

Query: 310 VHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 340
                   + E      ++G+L         
Sbjct: 320 -TIDSVTSAQELRGCTVINGSLIINIRGGNN 349

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 135 GEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSW 194
           G    + +  V C +C         +  R++    CG  +   CL++  +N       + 
Sbjct: 1   GTTGLRPSGTVSCPICM-DGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------AN 52

Query: 195 KCPSCR 200
            CP+CR
Sbjct: 53  TCPTCR 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	864
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.84
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.81
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.8
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.45
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.39
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.31
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.26
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.18
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.14
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.14
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.01
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	98.95
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.92
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	98.91
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	98.85
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	98.81
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	98.76
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	98.74
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	98.72
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	98.71
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	98.7
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	98.7
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	98.69
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	98.69
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	98.6
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	98.59
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	98.58
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	98.57
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	98.55
2yt5_A	66	Metal-response element-binding transcription facto	98.55
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	98.53
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	98.53
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.52
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	98.49
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	98.48
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	98.48
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	98.47
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	98.47
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	98.46
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	98.45
2yt5_A	66	Metal-response element-binding transcription facto	98.45
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	98.44
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	98.43
1we9_A	64	PHD finger family protein; structural genomics, PH	98.42
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	98.4
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	98.4
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	98.39
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	98.37
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	98.35
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	98.26
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.25
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	98.24
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	98.23
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	98.22
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	98.17
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.14
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.07
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	98.07
1wem_A	76	Death associated transcription factor 1; structura	98.07
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.06
1weu_A	91	Inhibitor of growth family, member 4; structural g	97.99
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	97.97
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	97.96
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	97.95
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	97.94
1wee_A	72	PHD finger family protein; structural genomics, PH	97.91
1weu_A	91	Inhibitor of growth family, member 4; structural g	97.9
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	97.88
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	97.85
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.84
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	97.81
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.79
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	97.77
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	97.77
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	97.73
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	97.69
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	97.68
1wee_A	72	PHD finger family protein; structural genomics, PH	97.64
1we9_A	64	PHD finger family protein; structural genomics, PH	97.64
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	97.56
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	97.54
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	97.53
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	97.53
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	97.51
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.5
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	97.47
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	97.43
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.42
1wem_A	76	Death associated transcription factor 1; structura	97.42
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	97.38
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.32
1wew_A	78	DNA-binding family protein; structural genomics, P	97.29
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.24
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	97.23
3kv5_D	488	JMJC domain-containing histone demethylation prote	97.22
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.2
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	97.19
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.19
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	97.16
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	97.06
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.01
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	96.94
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	96.92
1wew_A	78	DNA-binding family protein; structural genomics, P	96.86
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	96.73
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	96.45
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	96.1
3kv5_D	488	JMJC domain-containing histone demethylation prote	96.04
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	96.0
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	95.82
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	95.62
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	95.52
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	95.34
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	94.14
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	95.12
1ssf_A	156	Transformation related protein 53 binding protein	94.91
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	94.86
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	92.89
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	92.52
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	92.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	92.42
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	92.16
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	89.8
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	89.29
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	89.03
2d9t_A	78	Tudor domain-containing protein 3; structural geno	88.09
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	86.6
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	86.45
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	86.41
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	85.95
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	84.04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	83.88
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	83.45
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	81.8
2lcd_A	118	AT-rich interactive domain-containing protein 4A;	82.43
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	81.27
2ect_A	78	Ring finger protein 126; metal binding protein, st	80.74
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	80.13
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	80.09

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=179.77  Aligned_cols=105  Identities=28%  Similarity=0.806  Sum_probs=92.8

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRC  220 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C  220 (864)
                      ..++++|.+|..+|+     .++||.|+.|+++||+.||++...+   ++.+.|+|++|++|.+|+..++++.||+|+.|
T Consensus         4 ~~~~~~C~~C~~~g~-----~~~ll~C~~C~~~~H~~Cl~~~~~~---~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C   75 (111)
T 2ysm_A            4 GSSGANCAVCDSPGD-----LLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTC   75 (111)
T ss_dssp             CCCCSCBTTTCCCCC-----TTTSEECSSSCCEECTTTTTCCCCT---TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSS
T ss_pred             CCCCCCCcCCCCCCC-----CcCCeECCCCCCCcChHHhCCcccc---ccccCccCCcCCcccccCccCCCCCeeECCCC
Confidence            457889999998873     2478999999999999999997643   34689999999999999999988899999999


Q ss_pred             CCcccccccCCCCcCCCCCCccccCCCcccCCC
Q 002926          221 DAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCG  253 (864)
Q Consensus       221 ~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG  253 (864)
                      +++||.+|+.|++..+|.+.|+|+.|..|..++
T Consensus        76 ~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~  108 (111)
T 2ysm_A           76 DKGYHTFCLQPVMKSVPTNGWKCKNCRICISGP  108 (111)
T ss_dssp             CCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred             CcHHhHHhcCCccccCCCCCcCCcCCcCcCCCC
Confidence            999999999999999999999999988776654

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.81  E-value=5e-21  Score=178.32  Aligned_cols=103  Identities=28%  Similarity=0.789  Sum_probs=90.0

Q ss_pred             ccccccccccc--cCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecCCCCC
Q 002926          145 VMCRLCFVGEN--EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA  222 (864)
Q Consensus       145 d~C~vC~~gG~--~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~r  222 (864)
                      ++|.+|.+++.  ...+..++||.|+.|+++||+.||++...+...++.+.|+|++|++|.+|+...+++.||.|+.|++
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~   81 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR   81 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCc
Confidence            58999998762  2345567999999999999999999876544445578999999999999999887789999999999


Q ss_pred             cccccccCCCCcCCCCCCccccCCC
Q 002926          223 AYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       223 aYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +||++|+.|++..+|.+.|+|+.|.
T Consensus        82 ~yH~~Cl~ppl~~~P~g~W~C~~C~  106 (114)
T 2kwj_A           82 GYHMYCLNPPVAEPPEGSWSCHLCW  106 (114)
T ss_dssp             EEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred             cccccccCCCccCCCCCCeECcccc
Confidence            9999999999999999999999875

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.80  E-value=2.5e-20  Score=173.00  Aligned_cols=106  Identities=25%  Similarity=0.732  Sum_probs=89.7

Q ss_pred             cccccccccccccc-cCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCC-CCCceeecCC
Q 002926          142 NTNVMCRLCFVGEN-EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFCRR  219 (864)
Q Consensus       142 ~~dd~C~vC~~gG~-~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~g-d~~~LL~Cd~  219 (864)
                      .+.++|.+|.+.+. +..+..++||.|+.|+++||++||++.......++.+.|+|++|++|.+|+..+ +++.||.|+.
T Consensus         3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~   82 (112)
T 3v43_A            3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDS   82 (112)
T ss_dssp             CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTT
T ss_pred             ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCC
Confidence            35679999998653 234556799999999999999999876544444567899999999999999865 4457999999


Q ss_pred             CCCcccccccCCCCcCCCCCCccccCCC
Q 002926          220 CDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       220 C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      |+++||.+|+.|++..+|.+.|+|+.|.
T Consensus        83 C~~~yH~~Cl~p~l~~~P~~~W~C~~C~  110 (112)
T 3v43_A           83 CDRGFHMECCDPPLTRMPKGMWICQICR  110 (112)
T ss_dssp             TCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred             CCCeeecccCCCCCCCCCCCCeECCCCC
Confidence            9999999999999999999999999985

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.45  E-value=5.4e-14  Score=129.71  Aligned_cols=96  Identities=25%  Similarity=0.610  Sum_probs=77.3

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccccc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV  280 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~  280 (864)
                      +|.+|+..++.+.||.|+.|++.||..|+.+....++.+.|+|+.|..|..|+...                        
T Consensus         9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~------------------------   64 (111)
T 2ysm_A            9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG------------------------   64 (111)
T ss_dssp             CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS------------------------
T ss_pred             CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccC------------------------
Confidence            78899999877788999999999999999998877788999999997666665321                        


Q ss_pred             cccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          281 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       281 KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                                     +...||.|+.|+++||..|+...-      ...+.+.|+|+.|..-
T Consensus        65 ---------------~~~~ll~Cd~C~~~yH~~Cl~ppl------~~~P~g~W~C~~C~~c  104 (111)
T 2ysm_A           65 ---------------EDSKMLVCDTCDKGYHTFCLQPVM------KSVPTNGWKCKNCRIC  104 (111)
T ss_dssp             ---------------CCTTEEECSSSCCEEEGGGSSSCC------SSCCSSCCCCHHHHCC
T ss_pred             ---------------CCCCeeECCCCCcHHhHHhcCCcc------ccCCCCCcCCcCCcCc
Confidence                           124689999999999999998421      1234578999999753

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.39  E-value=2.4e-13  Score=126.13  Aligned_cols=86  Identities=23%  Similarity=0.524  Sum_probs=75.2

Q ss_pred             CCcccccccccccccccCcccCCceeecC--CCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeec
Q 002926          140 QSNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFC  217 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~C  217 (864)
                      ...++++|.+|+.+|        +||.|+  .|+++||+.||++.     .++.+.|+|+.| .|.+|++...    ++|
T Consensus        11 ~~~~~~~C~~C~~~G--------~ll~CD~~~Cp~~fH~~Cl~L~-----~~P~g~W~Cp~c-~C~~C~k~~~----~~C   72 (107)
T 4gne_A           11 KQMHEDYCFQCGDGG--------ELVMCDKKDCPKAYHLLCLNLT-----QPPYGKWECPWH-QCDECSSAAV----SFC   72 (107)
T ss_dssp             CCSSCSSCTTTCCCS--------EEEECCSTTCCCEECTGGGTCS-----SCCSSCCCCGGG-BCTTTCSBCC----EEC
T ss_pred             cCCCCCCCCcCCCCC--------cEeEECCCCCCcccccccCcCC-----cCCCCCEECCCC-CCCcCCCCCC----cCc
Confidence            345778999999776        899999  89999999999952     345789999999 7999998763    899


Q ss_pred             CCCCCcccccccCCCCcCCCCCCccc
Q 002926          218 RRCDAAYHCYCQHPPHKNVSSGPYLC  243 (864)
Q Consensus       218 d~C~raYH~~CL~Ppl~svP~g~W~C  243 (864)
                      ..|+.+||..|+...+...+...|+|
T Consensus        73 ~~Cp~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           73 EFCPHSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             SSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred             CCCCcchhhhccCCcceecCCCCcee
Confidence            99999999999999998888889987

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.31  E-value=9.6e-13  Score=122.12  Aligned_cols=88  Identities=23%  Similarity=0.505  Sum_probs=66.6

Q ss_pred             CCCCceeecCCCCCcccccccCCC--C-cCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccc
Q 002926          209 GDPNKFMFCRRCDAAYHCYCQHPP--H-KNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYC  285 (864)
Q Consensus       209 gd~~~LL~Cd~C~raYH~~CL~Pp--l-~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyC  285 (864)
                      +..+.||.|+.|++.||.+|++..  + ..++.+.|+|+.|..|..|+...                             
T Consensus        21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~-----------------------------   71 (112)
T 3v43_A           21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQG-----------------------------   71 (112)
T ss_dssp             SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCC-----------------------------
T ss_pred             CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcC-----------------------------
Confidence            455689999999999999999842  2 24568899999997676665321                             


Q ss_pred             ccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          286 PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       286 pVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                               .+...||.||.|+++||..|+...      +...+.+.|+|+.|+.
T Consensus        72 ---------~~~~~ll~Cd~C~~~yH~~Cl~p~------l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           72 ---------KNADNMLFCDSCDRGFHMECCDPP------LTRMPKGMWICQICRP  111 (112)
T ss_dssp             ---------CTTCCCEECTTTCCEECGGGCSSC------CSSCCSSCCCCTTTSC
T ss_pred             ---------CCccceEEcCCCCCeeecccCCCC------CCCCCCCCeECCCCCC
Confidence                     123468999999999999998632      1123567999999974

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.26  E-value=9.4e-13  Score=122.61  Aligned_cols=95  Identities=22%  Similarity=0.555  Sum_probs=71.4

Q ss_pred             cccccccC-------CCCCceeecCCCCCcccccccCCCCc---CCCCCCccccCCCcccCCCCCCCCCCCccccccCcc
Q 002926          201 ICEICRRT-------GDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYT  270 (864)
Q Consensus       201 ~C~VCgk~-------gd~~~LL~Cd~C~raYH~~CL~Ppl~---svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~  270 (864)
                      +|.+|...       |+.+.||.|+.|++.||..|+.+...   .++.+.|+|+.|..|..|+..               
T Consensus         3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~---------------   67 (114)
T 2kwj_A            3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS---------------   67 (114)
T ss_dssp             CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC---------------
T ss_pred             cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCccccc---------------
Confidence            45566543       34558999999999999999997643   356789999999766666542               


Q ss_pred             ccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          271 CCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       271 lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                                              .++..||.||.|+++||..|+...      +...+.+.|+|+.|..
T Consensus        68 ------------------------~~~~~ll~Cd~C~~~yH~~Cl~pp------l~~~P~g~W~C~~C~~  107 (114)
T 2kwj_A           68 ------------------------ENDDQLLFCDDCDRGYHMYCLNPP------VAEPPEGSWSCHLCWE  107 (114)
T ss_dssp             ------------------------TTTTTEEECSSSCCEEETTTSSSC------CSSCCSSCCCCHHHHH
T ss_pred             ------------------------CCCCceEEcCCCCccccccccCCC------ccCCCCCCeECccccc
Confidence                                    124579999999999999999842      1123567999999963

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.18  E-value=1.4e-11  Score=106.11  Aligned_cols=55  Identities=36%  Similarity=0.960  Sum_probs=52.0

Q ss_pred             CCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCC-CccccCCC
Q 002926          192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT  247 (864)
Q Consensus       192 ~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g-~W~CP~C~  247 (864)
                      ..|+|++| +|.+|++..+.+.||.|+.|+++||++|++|++..+|.+ .|+|+.|.
T Consensus        12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   67 (70)
T 3asl_A           12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR   67 (70)
T ss_dssp             TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred             CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCcc
Confidence            57999999 999999888778999999999999999999999999999 99999986

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.2e-11  Score=105.80  Aligned_cols=55  Identities=36%  Similarity=0.950  Sum_probs=51.6

Q ss_pred             CCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCC-CccccCCC
Q 002926          192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT  247 (864)
Q Consensus       192 ~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g-~W~CP~C~  247 (864)
                      ..|+|++| +|.+|+...+.+.||.|+.|+++||++|+.|++..+|.+ .|+|+.|.
T Consensus        20 ~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           20 PEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred             CCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence            46999999 999999987778999999999999999999999999999 99999985

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.14  E-value=2.7e-11  Score=106.34  Aligned_cols=55  Identities=36%  Similarity=0.959  Sum_probs=52.3

Q ss_pred             CCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCC-ccccCCC
Q 002926          192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGP-YLCPKHT  247 (864)
Q Consensus       192 ~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~-W~CP~C~  247 (864)
                      ..|+|+.| .|.+|+...+++.||+|+.|+++||++|+.|++..+|.+. |+|+.|.
T Consensus        20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~   75 (77)
T 3shb_A           20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR   75 (77)
T ss_dssp             TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred             CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence            57999999 9999999988889999999999999999999999999998 9999986

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=9.5e-11  Score=105.76  Aligned_cols=58  Identities=34%  Similarity=0.828  Sum_probs=54.1

Q ss_pred             CCCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926          191 WSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       191 ~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      ...|.|.++.+|.+|+..++.+.||.|+.|+++||++|+.|++..+|.+.|+|+.|..
T Consensus         8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~   65 (92)
T 2e6r_A            8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL   65 (92)
T ss_dssp             CCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred             CchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence            4689999999999999998777899999999999999999999999999999999863

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.95  E-value=3e-10  Score=91.42  Aligned_cols=47  Identities=32%  Similarity=0.996  Sum_probs=44.2

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..++.+.||.|+.|+++||.+|+.|++..+|.+.|+|+.|.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~   48 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence            58899998888899999999999999999999999999999999986

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.92  E-value=5.2e-10  Score=115.61  Aligned_cols=55  Identities=36%  Similarity=0.960  Sum_probs=48.2

Q ss_pred             CCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCC-CccccCCC
Q 002926          192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT  247 (864)
Q Consensus       192 ~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g-~W~CP~C~  247 (864)
                      ..|.|..| .|.+|+...+.+.||+|+.|+++||++|+.||+..+|.+ .|+|+.|.
T Consensus       168 ~~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          168 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred             cCEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence            57999999 999999988778999999999999999999999999998 99999985

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=98.91  E-value=1.5e-09  Score=100.72  Aligned_cols=67  Identities=27%  Similarity=0.719  Sum_probs=56.6

Q ss_pred             cccccccCCCCCceeecC--CCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCccc
Q 002926          201 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL  278 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd--~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~el  278 (864)
                      +|.+|+.+|   .||.|+  .|+++||+.|++  +..+|.+.|+||.|. |..|++..                      
T Consensus        17 ~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~-C~~C~k~~----------------------   68 (107)
T 4gne_A           17 YCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ-CDECSSAA----------------------   68 (107)
T ss_dssp             SCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB-CTTTCSBC----------------------
T ss_pred             CCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC-CCcCCCCC----------------------
Confidence            677788666   899999  899999999998  788999999999997 77776431                      


Q ss_pred             cccccccccccccccCCCCCCceeccCCCCccccccCC
Q 002926          279 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG  316 (864)
Q Consensus       279 f~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~  316 (864)
                                           -+.|..|+..||.+|..
T Consensus        69 ---------------------~~~C~~Cp~sfC~~c~~   85 (107)
T 4gne_A           69 ---------------------VSFCEFCPHSFCKDHEK   85 (107)
T ss_dssp             ---------------------CEECSSSSCEECTTTCT
T ss_pred             ---------------------CcCcCCCCcchhhhccC
Confidence                                 16789999999999976

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.85  E-value=3e-09  Score=95.65  Aligned_cols=57  Identities=21%  Similarity=0.566  Sum_probs=51.2

Q ss_pred             CCCCcCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcc
Q 002926          190 HWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC  249 (864)
Q Consensus       190 ~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C  249 (864)
                      ....|...+-.+|.+|+.++   .||.|+.|+++||++|+.|++..+|.+.|+|+.|..+
T Consensus        16 ~~~~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           16 DEFGTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             CCCCSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             ccccccCCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            35678888888999999887   7999999999999999999999999999999998754

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=98.81  E-value=1.3e-09  Score=109.53  Aligned_cols=63  Identities=37%  Similarity=0.922  Sum_probs=51.0

Q ss_pred             cccccccccccccCCC-CCCceeccCCCCccccccCCCChHHHhhhcc-CCCCceeCCCCCCCCc
Q 002926          281 KGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQV-DGNLQYRCPTCRGECY  343 (864)
Q Consensus       281 KgnyCpVC~K~Y~D~d-g~~MVqCD~C~~WfH~eCd~l~dE~y~~~gi-d~~~~Y~CptCr~~~~  343 (864)
                      +|+||++|.+.|.+++ +..||+||.|..|||..|++++++.+..+.. +....|+|+.|+....
T Consensus         1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            4789999999998876 5789999999999999999998877766532 1224799999997643

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=98.76  E-value=4.2e-09  Score=88.26  Aligned_cols=44  Identities=34%  Similarity=1.070  Sum_probs=40.1

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+   .||.|+.|+++||.+|+.|++..+|.+.|+|+.|.
T Consensus        11 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~   54 (61)
T 1mm2_A           11 FCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT   54 (61)
T ss_dssp             SCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTT
T ss_pred             cCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhc
Confidence            677777665   89999999999999999999999999999999986

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=98.74  E-value=3.5e-09  Score=90.39  Aligned_cols=44  Identities=23%  Similarity=0.612  Sum_probs=39.9

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      .|.+|++.+   .||.|+.|+++||++|+.|++..+|.+.|+|+.|.
T Consensus        14 ~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~   57 (66)
T 2lri_C           14 RCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCS   57 (66)
T ss_dssp             CCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTT
T ss_pred             CcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECcccc
Confidence            567777665   79999999999999999999999999999999985

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=98.72  E-value=6.4e-09  Score=87.12  Aligned_cols=46  Identities=30%  Similarity=0.882  Sum_probs=41.0

Q ss_pred             CccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          199 CRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       199 Ck~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      -.+|.+|+..+   .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus        11 ~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~   56 (61)
T 2l5u_A           11 QDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE   56 (61)
T ss_dssp             CSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGG
T ss_pred             CCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECcccc
Confidence            34677888765   89999999999999999999999999999999985

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4e-09  Score=86.73  Aligned_cols=44  Identities=34%  Similarity=1.099  Sum_probs=39.7

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+   .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus        11 ~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~   54 (56)
T 2yql_A           11 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ   54 (56)
T ss_dssp             SCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred             CCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence            566777765   89999999999999999999999999999999985

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.70  E-value=1.5e-08  Score=91.18  Aligned_cols=61  Identities=20%  Similarity=0.510  Sum_probs=48.4

Q ss_pred             ccccCCCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccc
Q 002926          135 GEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICR  206 (864)
Q Consensus       135 ~de~~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCg  206 (864)
                      ........++++|.+|+.+|        +||+|+.|+++||+.|+.|+...   ++.+.|+|+.|..+...+
T Consensus        16 ~~~~~~d~n~~~C~vC~~~g--------~LL~CD~C~~~fH~~Cl~PpL~~---~P~g~W~C~~C~~~~~~k   76 (88)
T 1fp0_A           16 DEFGTLDDSATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQD---VPGEEWSCSLCHVLPDLK   76 (88)
T ss_dssp             CCCCSSSSSSSCCSSSCSSS--------CCEECTTSSCEECTTSSSTTCCC---CCSSSCCCCSCCCCCSSC
T ss_pred             ccccccCCCCCcCcCcCCCC--------CEEECCCCCCceecccCCCCCCC---CcCCCcCCccccCCCccc
Confidence            33445566788999999876        89999999999999999987653   457899999996554433

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=98.70  E-value=4.4e-09  Score=89.25  Aligned_cols=44  Identities=32%  Similarity=0.899  Sum_probs=39.7

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+   .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus        10 ~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~   53 (66)
T 1xwh_A           10 ECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL   53 (66)
T ss_dssp             SBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHH
T ss_pred             CCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECcccc
Confidence            566777665   89999999999999999999999999999999986

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=98.69  E-value=5.9e-09  Score=96.55  Aligned_cols=109  Identities=18%  Similarity=0.353  Sum_probs=71.8

Q ss_pred             CCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcc
Q 002926          198 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGR  277 (864)
Q Consensus       198 eCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~e  277 (864)
                      +|.+|.+|++..       |+.|...||..|++++       .|.|..|+.+..++..             +..|..|  
T Consensus         6 rC~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~~~~-------------~~~~~~c--   56 (117)
T 4bbq_A            6 RCRKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLRQCLAPR-------------LPHSVTC--   56 (117)
T ss_dssp             CCSCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGGCCSSCB-------------CCTTCBC--
T ss_pred             cCCcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhheeecccc-------------ccccccc--
Confidence            577888998653       9999999999999864       5888888754444221             1122222  


Q ss_pred             ccccccccccccccccCC-CCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCC
Q 002926          278 LFVKGNYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC  342 (864)
Q Consensus       278 lf~KgnyCpVC~K~Y~D~-dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~  342 (864)
                           .+|..|...+.+. ....||+|+.|..|||..|+++..+.+.  ..+....|.|+.|+.++
T Consensus        57 -----~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~--~~~~~~~~~C~~C~~~~  115 (117)
T 4bbq_A           57 -----SLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLL--NEELPNCWECPKCYQED  115 (117)
T ss_dssp             -----TTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEE--CSSSSSEEECTTTC---
T ss_pred             -----cccCcccccccccccCcceEEeeecCCeEECCCCCCCccccc--cccCCCCeECCCCcCCC
Confidence                 2455565555332 2456899999999999999997544321  12223479999998754

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=98.69  E-value=4.6e-09  Score=87.41  Aligned_cols=44  Identities=34%  Similarity=1.099  Sum_probs=40.2

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+   .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus         7 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~   50 (60)
T 2puy_A            7 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ   50 (60)
T ss_dssp             SCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred             CCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence            677888765   89999999999999999999999999999999985

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=98.60  E-value=2.2e-08  Score=83.83  Aligned_cols=47  Identities=32%  Similarity=0.853  Sum_probs=40.4

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      .++.+|.+|+.++        +||.|+.|.++||+.|+.++...   ++.+.|+|+.|
T Consensus         7 ~~~~~C~vC~~~g--------~ll~Cd~C~~~fH~~Cl~ppl~~---~p~g~W~C~~C   53 (61)
T 1mm2_A            7 HHMEFCRVCKDGG--------ELLCCDTCPSSYHIHCLNPPLPE---IPNGEWLCPRC   53 (61)
T ss_dssp             SSCSSCTTTCCCS--------SCBCCSSSCCCBCSSSSSSCCSS---CCSSCCCCTTT
T ss_pred             CCCCcCCCCCCCC--------CEEEcCCCCHHHcccccCCCcCc---CCCCccCChhh
Confidence            4567999999765        89999999999999999987653   34789999999

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=2.2e-08  Score=85.49  Aligned_cols=49  Identities=22%  Similarity=0.539  Sum_probs=40.7

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ..+...|.+|+.++        +||+|+.|.++||++||.+++..   ++.+.|+|+.|.
T Consensus         9 ~~~~~~C~vC~~~~--------~ll~Cd~C~~~~H~~Cl~P~l~~---~P~g~W~C~~C~   57 (66)
T 2lri_C            9 LAPGARCGVCGDGT--------DVLRCTHCAAAFHWRCHFPAGTS---RPGTGLRCRSCS   57 (66)
T ss_dssp             CCTTCCCTTTSCCT--------TCEECSSSCCEECHHHHCTTTCC---CCSSSCCCTTTT
T ss_pred             CCCCCCcCCCCCCC--------eEEECCCCCCceecccCCCccCc---CCCCCEECcccc
Confidence            34556899998765        89999999999999999987654   357899999983

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=98.58  E-value=1.4e-08  Score=86.10  Aligned_cols=48  Identities=25%  Similarity=0.782  Sum_probs=41.0

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ..++++|.+|..+|        +||.|+.|.++||+.|+.|++..   ++.+.|+|+.|
T Consensus         5 ~~~~~~C~vC~~~g--------~ll~CD~C~~~fH~~Cl~ppl~~---~P~g~W~C~~C   52 (66)
T 1xwh_A            5 QKNEDECAVCRDGG--------ELICCDGCPRAFHLACLSPPLRE---IPSGTWRCSSC   52 (66)
T ss_dssp             CSCCCSBSSSSCCS--------SCEECSSCCCEECTTTSSSCCSS---CCSSCCCCHHH
T ss_pred             CCCCCCCccCCCCC--------CEEEcCCCChhhcccccCCCcCc---CCCCCeECccc
Confidence            45678999999876        89999999999999999987653   34689999988

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.57  E-value=1.4e-08  Score=90.85  Aligned_cols=48  Identities=25%  Similarity=0.663  Sum_probs=41.8

Q ss_pred             cccccccCCC--CCceeecCCCCCcccccccCCCCcC----CCCCCccccCCCc
Q 002926          201 ICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd--~~~LL~Cd~C~raYH~~CL~Ppl~s----vP~g~W~CP~C~~  248 (864)
                      +|.+|+....  .+.||+|+.|+++||++|+.|++..    +|.+.|+|+.|..
T Consensus        18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~   71 (88)
T 1wev_A           18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR   71 (88)
T ss_dssp             SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred             cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence            7888887654  3589999999999999999999984    8999999999864

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=98.55  E-value=3e-08  Score=83.06  Aligned_cols=49  Identities=27%  Similarity=0.794  Sum_probs=41.2

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ..++.+|.+|..++        +||.|+.|.++||+.|+.++...   ++.+.|+|+.|.
T Consensus         8 ~~~~~~C~vC~~~g--------~ll~CD~C~~~fH~~Cl~p~l~~---~p~g~W~C~~C~   56 (61)
T 2l5u_A            8 TDHQDYCEVCQQGG--------EIILCDTCPRAYHMVCLDPDMEK---APEGKWSCPHCE   56 (61)
T ss_dssp             SCCCSSCTTTSCCS--------SEEECSSSSCEEEHHHHCTTCCS---CCCSSCCCTTGG
T ss_pred             CCCCCCCccCCCCC--------cEEECCCCChhhhhhccCCCCCC---CCCCceECcccc
Confidence            44667999999865        89999999999999999997643   357899999984

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=98.55  E-value=1.5e-08  Score=85.40  Aligned_cols=48  Identities=29%  Similarity=0.852  Sum_probs=40.6

Q ss_pred             cccccccC--CCCCceeecCCCCCcccccccCCCCcC--C-CCCCccccCCCc
Q 002926          201 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQHPPHKN--V-SSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~--gd~~~LL~Cd~C~raYH~~CL~Ppl~s--v-P~g~W~CP~C~~  248 (864)
                      +|.+|+..  .+.+.||+|+.|+++||++|+.|++..  + |.+.|+|+.|..
T Consensus         8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~   60 (66)
T 2yt5_A            8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF   60 (66)
T ss_dssp             CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence            67788876  334689999999999999999998876  4 889999999863

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=98.53  E-value=2.3e-08  Score=83.16  Aligned_cols=47  Identities=28%  Similarity=0.792  Sum_probs=40.3

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      .++.+|.+|+.+|        +||.|+.|.++||+.|++|+...   ++.+.|+|+.|
T Consensus         3 ~~~~~C~vC~~~g--------~ll~Cd~C~~~fH~~Cl~ppl~~---~p~g~W~C~~C   49 (60)
T 2puy_A            3 IHEDFCSVCRKSG--------QLLMCDTCSRVYHLDCLDPPLKT---IPKGMWICPRC   49 (60)
T ss_dssp             CCCSSCTTTCCCS--------SCEECSSSSCEECGGGSSSCCSS---CCCSCCCCHHH
T ss_pred             CCCCCCcCCCCCC--------cEEEcCCCCcCEECCcCCCCcCC---CCCCceEChhc
Confidence            4677999999865        89999999999999999987653   34689999988

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=2.5e-08  Score=81.94  Aligned_cols=48  Identities=29%  Similarity=0.813  Sum_probs=40.8

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ..++.+|.+|+.++        +||.|+.|.++||+.|+.|++..   ++.+.|+|+.|
T Consensus         6 ~~~~~~C~vC~~~g--------~ll~Cd~C~~~~H~~Cl~ppl~~---~p~g~W~C~~C   53 (56)
T 2yql_A            6 SGHEDFCSVCRKSG--------QLLMCDTCSRVYHLDCLDPPLKT---IPKGMWICPRC   53 (56)
T ss_dssp             CSSCCSCSSSCCSS--------CCEECSSSSCEECSSSSSSCCCS---CCCSSCCCHHH
T ss_pred             CCCCCCCccCCCCC--------eEEEcCCCCcceECccCCCCcCC---CCCCceEChhh
Confidence            45677999999865        89999999999999999987653   34689999988

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.52  E-value=3.8e-08  Score=84.92  Aligned_cols=47  Identities=28%  Similarity=0.600  Sum_probs=41.1

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+.+.+...||.|+.|+.|||..|++++...++.+.|+|+.|.
T Consensus        20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~   66 (75)
T 2k16_A           20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCA   66 (75)
T ss_dssp             CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTH
T ss_pred             CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhcc
Confidence            56678887666679999999999999999998887788899999986

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.49  E-value=2.5e-08  Score=89.25  Aligned_cols=56  Identities=20%  Similarity=0.590  Sum_probs=43.0

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccc-cCCCCCcCCCCCc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD-LFHWSSWKCPSCR  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~-~v~~~~W~CpeCk  200 (864)
                      ..+.+|.+|..+..   .....||+|+.|.++||++|+.|++...+ .++.+.|+|+.|.
T Consensus        14 e~~~~C~vC~~~~~---~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~   70 (88)
T 1wev_A           14 EMGLACVVCRQMTV---ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             HHCCSCSSSCCCCC---CTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             CCCCcCCCCCCCCC---CCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence            35679999998642   12248999999999999999999765321 2467999999984

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=98.48  E-value=1.7e-08  Score=85.96  Aligned_cols=54  Identities=26%  Similarity=0.776  Sum_probs=46.4

Q ss_pred             ccccccccccCCCCCCceecc-CCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR  339 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD-~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr  339 (864)
                      .|++|.+.|.+.  ..||+|| .|..|||..|++++.+.|..+...+...|+|+.|.
T Consensus        10 ~C~~C~~p~~~~--~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A           10 PCGICTNEVNDD--QDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             BCTTTCSBCCTT--SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             cCccCCCccCCC--CCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            588999998764  4699999 99999999999999888887755567799999985

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=98.48  E-value=6.5e-08  Score=96.20  Aligned_cols=45  Identities=27%  Similarity=0.837  Sum_probs=41.2

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      +|.+|+.+|   .++.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus         6 ~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~   50 (184)
T 3o36_A            6 WCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD   50 (184)
T ss_dssp             SCTTTCCCS---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccCCCCC---eeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence            677888776   799999999999999999999999999999999974

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.47  E-value=6e-08  Score=77.91  Aligned_cols=47  Identities=26%  Similarity=0.803  Sum_probs=38.8

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      .|.+|+.+++     .+.||.|+.|.++||+.|+.|+...   ++.+.|+|+.|.
T Consensus         2 ~C~vC~~~~~-----~~~ll~Cd~C~~~~H~~Cl~p~l~~---~P~g~W~C~~C~   48 (51)
T 1f62_A            2 RCKVCRKKGE-----DDKLILCDECNKAFHLFCLRPALYE---VPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSC-----CSCCEECTTTCCEECHHHHCTTCCS---CCSSCCSCTTTS
T ss_pred             CCCCCCCCCC-----CCCEEECCCCChhhCcccCCCCcCC---CCCCcEECcCcc
Confidence            6999998653     2389999999999999999986653   346899999994

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=98.47  E-value=2.9e-08  Score=85.78  Aligned_cols=45  Identities=31%  Similarity=0.783  Sum_probs=39.4

Q ss_pred             cccccccCC--CCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~g--d~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+  +++.||+|+.|+++||++|++|+  .+|.+.|+|+.|.
T Consensus        18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~   64 (71)
T 2ku3_A           18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCL   64 (71)
T ss_dssp             SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCc
Confidence            678888775  56689999999999999999986  4899999999985

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=98.46  E-value=6.7e-08  Score=97.98  Aligned_cols=46  Identities=24%  Similarity=0.767  Sum_probs=41.8

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC  249 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C  249 (864)
                      +|.+|+.+|   .++.|+.|+++||..|+.|++..+|.+.|+|+.|...
T Consensus         9 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A            9 WCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI   54 (207)
T ss_dssp             SBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence            677888776   7999999999999999999999999999999998753

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=3e-08  Score=88.84  Aligned_cols=45  Identities=31%  Similarity=0.777  Sum_probs=39.2

Q ss_pred             cccccccCC--CCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~g--d~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|+..+  +.+.||+|+.|+.+||++|++|+.  +|.+.|+|+.|.
T Consensus        27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~   73 (88)
T 2l43_A           27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL   73 (88)
T ss_dssp             CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHH
T ss_pred             cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECcccc
Confidence            677888776  556899999999999999999874  889999999986

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=98.45  E-value=3.5e-08  Score=83.11  Aligned_cols=57  Identities=25%  Similarity=0.607  Sum_probs=42.5

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      +.++.+|.+|+.+.   +.....||+|+.|+++||+.|+.|+.......+.+.|+|+.|.
T Consensus         3 ~~~~~~C~vC~~~~---~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~   59 (66)
T 2yt5_A            3 SGSSGVCTICQEEY---SEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV   59 (66)
T ss_dssp             CCCCCCBSSSCCCC---CBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred             CCCCCCCCCCCCCC---CCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence            34567999999762   1223499999999999999999997653211257899999883

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=98.44  E-value=5.2e-08  Score=84.25  Aligned_cols=52  Identities=23%  Similarity=0.647  Sum_probs=42.2

Q ss_pred             CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ...++.+|.+|..++   +...++||+|+.|+++||++|++++.     ++.+.|+|+.|
T Consensus        12 ~~~~~~~C~vC~~~~---s~~~~~ll~CD~C~~~~H~~Cl~~~~-----vP~g~W~C~~C   63 (71)
T 2ku3_A           12 LIDEDAVCSICMDGE---SQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC   63 (71)
T ss_dssp             CCCSSCSCSSSCCCC---CCSSSCEEECSSSCCEEEHHHHTCSS-----CCSSCCCCHHH
T ss_pred             CCCCCCCCCCCCCCC---CCCCCCEEECCCCCCccccccCCCCc-----CCCCCcCCccC
Confidence            445677999999865   23345999999999999999999853     45789999988

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=98.43  E-value=9.6e-08  Score=95.00  Aligned_cols=48  Identities=31%  Similarity=0.760  Sum_probs=41.0

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      .++++|.+|+.+|        +||+|+.|+++||..|+.|+...   ++.+.|.|+.|.
T Consensus         2 ~~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~C~~p~l~~---~p~~~W~C~~C~   49 (184)
T 3o36_A            2 PNEDWCAVCQNGG--------ELLCCEKCPKVFHLSCHVPTLTN---FPSGEWICTFCR   49 (184)
T ss_dssp             CSCSSCTTTCCCS--------SCEECSSSSCEECTTTSSSCCSS---CCSSCCCCTTTS
T ss_pred             CCCCccccCCCCC--------eeeecCCCCcccCccccCCCCCC---CCCCCEECcccc
Confidence            3678999999876        89999999999999999987653   347899999983

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.42  E-value=5.4e-08  Score=81.57  Aligned_cols=54  Identities=30%  Similarity=0.839  Sum_probs=42.4

Q ss_pred             cccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          281 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       281 KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      ...||++|.+.|.+  +..||+||.|..|||..|+++..+....     ...|+|+.|+..
T Consensus         5 e~~~C~~C~~~~~~--~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAA--DEFWICCDLCEMWFHGKCVKITPARAEH-----IKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCS--SSCEEECSSSCCEEETTTTTCCTTGGGG-----CSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCC--CCCEEEccCCCCCCCccccCcChhHhcC-----CCcEECCCCcCc
Confidence            34689999999854  3579999999999999999987554321     247999999754

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=95.31  Aligned_cols=45  Identities=24%  Similarity=0.826  Sum_probs=41.8

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~  248 (864)
                      +|.+|+.+|   .++.|+.|+++||.+|+.|++..+|.+.|+|+.|..
T Consensus         4 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~   48 (189)
T 2ro1_A            4 ICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV   48 (189)
T ss_dssp             CBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred             cCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence            688999877   799999999999999999999999999999999973

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=7.8e-08  Score=86.17  Aligned_cols=52  Identities=23%  Similarity=0.647  Sum_probs=41.9

Q ss_pred             CCcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ...++.+|.+|..++   +...++||+|+.|+.+||+.|++++.     ++.+.|+|+.|
T Consensus        21 ~~~~~~~C~vC~~~~---s~~~~~ll~CD~C~~~fH~~Cl~p~~-----vP~g~W~C~~C   72 (88)
T 2l43_A           21 LIDEDAVCSICMDGE---SQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC   72 (88)
T ss_dssp             CCCCCCCCSSCCSSS---SCSEEEEEECSSSCCCCCHHHHTCSS-----CCSSCCCCHHH
T ss_pred             cCCCCCcCCcCCCCC---CCCCCCEEECCCCCchhhcccCCCCc-----cCCCceECccc
Confidence            345678999999865   22344899999999999999999853     45789999988

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=98.39  E-value=6.2e-08  Score=89.37  Aligned_cols=56  Identities=23%  Similarity=0.713  Sum_probs=47.3

Q ss_pred             ccccccccccCCCCCCceecc-CCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD-~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      .|++|.+.|.+.  ..||+|+ .|..|||..|++++.+.+..+...++..|+|+.|+..
T Consensus         5 ~C~iC~~p~~~~--~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~   61 (105)
T 2xb1_A            5 PCGACRSEVNDD--QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT   61 (105)
T ss_dssp             BCTTTCSBCCTT--SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred             CCCCCCCccCCC--CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence            589999999764  4699998 9999999999999988887764456679999999854

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.3e-07  Score=85.37  Aligned_cols=59  Identities=25%  Similarity=0.728  Sum_probs=45.0

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT  208 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~  208 (864)
                      ..+..+|.+|..+++     ...||+|+.|.++||+.||.|++..   ++.+.|+|+.|. -..|+++
T Consensus        13 ~~~~~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~Cl~Ppl~~---~P~g~W~C~~C~-~~~~~~~   71 (92)
T 2e6r_A           13 FIDSYICQVCSRGDE-----DDKLLFCDGCDDNYHIFCLLPPLPE---IPRGIWRCPKCI-LAECKQP   71 (92)
T ss_dssp             CCCCCCCSSSCCSGG-----GGGCEECTTTCCEECSSSSSSCCSS---CCSSCCCCHHHH-HHHHSCC
T ss_pred             ccCCCCCccCCCcCC-----CCCEEEcCCCCchhccccCCCCccc---CCCCCcCCccCc-CccccCC
Confidence            345668999998763     2389999999999999999987653   457899999993 3334443

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=98.35  E-value=1.8e-07  Score=94.76  Aligned_cols=48  Identities=29%  Similarity=0.724  Sum_probs=41.1

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      .++++|.+|+.+|        +||+|+.|+++||..|+.|+...   ++.+.|.|+.|.
T Consensus         5 ~~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~---~p~~~W~C~~C~   52 (207)
T 3u5n_A            5 PNEDWCAVCQNGG--------DLLCCEKCPKVFHLTCHVPTLLS---FPSGDWICTFCR   52 (207)
T ss_dssp             SSCSSBTTTCCCE--------EEEECSSSSCEECTTTSSSCCSS---CCSSCCCCTTTS
T ss_pred             CCCCCCCCCCCCC--------ceEEcCCCCCccCCccCCCCCCC---CCCCCEEeCcee
Confidence            3667999999877        89999999999999999987653   457899999984

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=5.2e-07  Score=79.16  Aligned_cols=50  Identities=30%  Similarity=0.692  Sum_probs=39.7

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCC-CcCCCCCc
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR  200 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~-~W~CpeCk  200 (864)
                      .+..|.+|+..++     ...||+|+.|.++||++||+|++..   ++.+ .|+|+.|.
T Consensus        25 ~~c~C~vC~~~~~-----~~~ll~CD~C~~~yH~~Cl~Ppl~~---~P~g~~W~C~~C~   75 (77)
T 2e6s_A           25 HSCSCRVCGGKHE-----PNMQLLCDECNVAYHIYCLNPPLDK---VPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSSCSSSCCCCC-----STTEEECSSSCCEEETTSSSSCCSS---CCCSSCCCCTTTC
T ss_pred             CCCCCcCcCCcCC-----CCCEEEcCCCCccccccccCCCccC---CCCCCCcCCcCcc
Confidence            4457888986432     2399999999999999999987654   3467 99999994

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.25  E-value=5.3e-07  Score=82.13  Aligned_cols=43  Identities=26%  Similarity=0.607  Sum_probs=36.8

Q ss_pred             ccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          204 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       204 VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|+...+...||.|+.|..|||..|+++++..+|. .|+|+.|.
T Consensus        32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~   74 (98)
T 2lv9_A           32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQ   74 (98)
T ss_dssp             TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTS
T ss_pred             ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCc
Confidence            56666666689999999999999999998877774 79999985

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=98.24  E-value=3.9e-07  Score=91.64  Aligned_cols=45  Identities=24%  Similarity=0.695  Sum_probs=39.3

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ++.|.+|+.+|        +||+|+.|.++||..|+.|+...   ++.+.|.|+.|
T Consensus         2 ~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~---~p~g~W~C~~C   46 (189)
T 2ro1_A            2 ATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQD---VPGEEWSCSLC   46 (189)
T ss_dssp             CCCBTTTCCCS--------SCCCCTTTCCBCCSTTSTTCCSS---CCCTTCCTTTT
T ss_pred             CCcCccCCCCC--------ceeECCCCCchhccccCCCCccc---CCCCCCCCcCc
Confidence            46899999877        89999999999999999987653   34789999999

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.23  E-value=4.7e-07  Score=79.17  Aligned_cols=52  Identities=35%  Similarity=0.859  Sum_probs=41.1

Q ss_pred             ccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          282 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       282 gnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      ..|| +|.+.|++  +..||+||.|..|||..|+++..+...     ....|+|+.|+..
T Consensus        12 ~~~C-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~-----~~~~~~C~~C~~~   63 (79)
T 1wep_A           12 PVYC-LCRQPYNV--NHFMIECGLCQDWFHGSCVGIEEENAV-----DIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCS-TTSCSCCS--SSCEEEBTTTCCEEEHHHHTCCHHHHT-----TCSBBCCTTTTTT
T ss_pred             ccEE-EcCCccCC--CCceEEcCCCCCcEEeeecCccccccc-----CCCeEECCCcccc
Confidence            3477 89888743  467999999999999999998766542     1348999999864

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=98.22  E-value=6.5e-07  Score=77.04  Aligned_cols=47  Identities=30%  Similarity=0.770  Sum_probs=36.9

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCC-CcCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR  200 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~-~W~CpeCk  200 (864)
                      .|.+|+..++     ...||.|+.|.++||+.||+|++..   ++.+ .|+|+.|.
T Consensus        20 ~C~~C~~~~~-----~~~ll~CD~C~~~yH~~Cl~Ppl~~---~P~g~~W~C~~C~   67 (70)
T 3asl_A           20 ACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECR   67 (70)
T ss_dssp             SBTTTCCCSC-----GGGEEECTTTCCEEEGGGSSSCCSS---CCSSSCCCCTTTS
T ss_pred             CCcCCCCcCC-----CCCEEEcCCCCCceecccCCCCcCC---CCCCCCcCCcCcc
Confidence            5667775432     2399999999999999999987654   3467 99999994

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=98.17  E-value=1.2e-06  Score=71.06  Aligned_cols=47  Identities=34%  Similarity=0.723  Sum_probs=37.1

Q ss_pred             cccccccccCCCCCCceecc-CCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926          285 CPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR  339 (864)
Q Consensus       285 CpVC~K~Y~D~dg~~MVqCD-~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr  339 (864)
                      |.+|.+.|.+  +..||+|| .|+.|||..|++++.+...      ...|+|+.|+
T Consensus         5 cc~C~~p~~~--~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~------~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKD--KVDWVQCDGGCDEWFHQVCVGVSPEMAE------NEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCT--TCCEEECTTTTCCEEETTTTTCCHHHHH------HSCCCCSCC-
T ss_pred             CCCCcCccCC--CCcEEEeCCCCCccCcccccCCCccccC------CCCEECCCCC
Confidence            6688888854  45799999 8999999999998766432      1479999995

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.14  E-value=2.6e-07  Score=89.68  Aligned_cols=44  Identities=18%  Similarity=0.461  Sum_probs=39.5

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcC-------CCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN-------VSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~s-------vP~g~W~CP~C~  247 (864)
                      +|.+|+.+|   .++.|+.|++.||..|+.|++..       .|.+.|.|+.|.
T Consensus        65 ~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~  115 (142)
T 2lbm_A           65 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH  115 (142)
T ss_dssp             SCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred             eecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence            888999888   89999999999999999988752       488999999986

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.07  E-value=7.3e-07  Score=86.56  Aligned_cols=52  Identities=19%  Similarity=0.645  Sum_probs=42.5

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCccccc---c-CCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD---L-FHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~---~-v~~~~W~CpeCk  200 (864)
                      ..++++|.+|..+|        +||+|+.|+++||..||.++..+..   + .+.+.|.|+.|.
T Consensus        60 Dg~~d~C~vC~~GG--------~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~  115 (142)
T 2lbm_A           60 DGMDEQCRWCAEGG--------NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH  115 (142)
T ss_dssp             TSCBCSCSSSCCCS--------SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred             CCCCCeecccCCCC--------cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence            44678999999988        9999999999999999998764211   1 357899999993

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=98.07  E-value=1.8e-06  Score=75.84  Aligned_cols=47  Identities=30%  Similarity=0.772  Sum_probs=36.4

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCC-cCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSS-WKCPSCR  200 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~-W~CpeCk  200 (864)
                      .|.+|+..++     .+.||+|+.|.++||++||.|++..   ++.+. |+|+.|+
T Consensus        28 ~C~vC~~~~d-----~~~ll~CD~C~~~yH~~Cl~PpL~~---~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSC-----GGGEEECTTTCCEEETTTSSSCCSS---CCSSSCCCCTTTC
T ss_pred             cCCccCCCCC-----CcceeEeCCCCCccCcccCCCcccC---CCCCCceECcCcc
Confidence            5666665442     3489999999999999999998753   34566 9999994

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.07  E-value=3.9e-07  Score=78.93  Aligned_cols=54  Identities=33%  Similarity=0.851  Sum_probs=40.6

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      .|| +|.+.|.   +..||+||.|..|||..|+++.......+.. ....|+|+.|+..
T Consensus        17 ~~C-~C~~~~~---~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~-~~~~~~C~~C~~~   70 (76)
T 1wem_A           17 LYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLER-NGEDYICPNCTIL   70 (76)
T ss_dssp             CCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH-HTCCCCCHHHHHH
T ss_pred             CEE-ECCCccC---CCCEEEeCCCCCcEeCeEEccchhhhhhccC-CCCeEECcCCcCc
Confidence            467 7888764   3579999999999999999998665443311 2358999999753

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.06  E-value=1.9e-06  Score=74.31  Aligned_cols=51  Identities=27%  Similarity=0.661  Sum_probs=40.4

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ....+|.+|....+     .+.||.|+.|.++||..|++++....   +.+.|+|+.|.
T Consensus        16 ~~~~~C~~C~~~~~-----~~~mi~CD~C~~wfH~~Cv~~~~~~~---~~~~w~C~~C~   66 (75)
T 2k16_A           16 NQIWICPGCNKPDD-----GSPMIGCDDCDDWYHWPCVGIMAAPP---EEMQWFCPKCA   66 (75)
T ss_dssp             CEEECBTTTTBCCS-----SCCEEECSSSSSEEEHHHHTCSSCCC---SSSCCCCTTTH
T ss_pred             CCCcCCCCCCCCCC-----CCCEEEcCCCCcccccccCCCCccCC---CCCCEEChhcc
Confidence            35568999987642     23799999999999999999976543   24789999983

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.99  E-value=4.9e-06  Score=75.30  Aligned_cols=48  Identities=33%  Similarity=0.899  Sum_probs=37.5

Q ss_pred             ccccccccccccCCCCCCceeccC--CC-CccccccCCCChHHHhhhccCCCCceeCCCCCCCC
Q 002926          282 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC  342 (864)
Q Consensus       282 gnyCpVC~K~Y~D~dg~~MVqCD~--C~-~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~  342 (864)
                      ..|| +|.+.+.    +.||+||.  |+ .|||..|+++..        .+...|+|+.|+...
T Consensus        36 ~~yC-iC~~~~~----g~MI~CD~~dC~~~WfH~~CVgl~~--------~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           36 PTYC-LCHQVSY----GEMIGCDNPDCSIEWFHFACVGLTT--------KPRGKWFCPRCSQES   86 (91)
T ss_dssp             CBCS-TTCCBCC----SCCCCCSCSSCSCCCCCSTTTTCSS--------CCCSSCCCTTTCCCC
T ss_pred             CcEE-ECCCCCC----CCEeEecCCCCCCCCEecccCCcCc--------CCCCCEECcCccCcC
Confidence            3578 8987752    47999999  77 799999999753        235689999998653

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=97.97  E-value=4.1e-06  Score=72.39  Aligned_cols=43  Identities=21%  Similarity=0.722  Sum_probs=35.8

Q ss_pred             cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|++... ..||.|+.  |. .|||..|++  +..+|.+.|+||.|.
T Consensus        18 ~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~   63 (71)
T 1wen_A           18 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   63 (71)
T ss_dssp             CS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTS
T ss_pred             EE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCC
Confidence            56 6887643 47999999  77 699999999  677788999999986

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=97.96  E-value=2.6e-06  Score=88.20  Aligned_cols=49  Identities=29%  Similarity=0.724  Sum_probs=36.3

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCC-CcCCCCCc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~-~W~CpeCk  200 (864)
                      ...|.+|+..++     ...||+|+.|.++||+.||+|++..   ++.+ .|+|+.|.
T Consensus       174 ~c~C~vC~~~~~-----~~~lL~CD~C~~~yH~~CL~PPL~~---vP~G~~W~Cp~C~  223 (226)
T 3ask_A          174 VCACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCSSSCCCCC-------CCEECSSSCCEECSCC--CCCCS---CCSSSCCCCGGGC
T ss_pred             CCCCcCCCCCCC-----CCCeEEcCCCCcceeCccCCCCccc---CCCCCCCCCcCCc
Confidence            456888886542     2389999999999999999997754   3467 99999993

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=97.95  E-value=2.4e-06  Score=78.96  Aligned_cols=81  Identities=20%  Similarity=0.314  Sum_probs=51.8

Q ss_pred             cCCCCccccccccccCcccccc------CC---CCCcCCCCCccccccccCCC-CCceeecCCCCCcccccccCCCCcCC
Q 002926          167 CKSCGKKYHRNCLKNWAQNRDL------FH---WSSWKCPSCRICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNV  236 (864)
Q Consensus       167 Cd~C~raYH~~CL~p~~~~~~~------v~---~~~W~CpeCk~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~sv  236 (864)
                      |+.|...||..|++.+...-..      ..   ...+.|..|..|..|....+ +..|+.|+.|..|||..|+.++...+
T Consensus        18 C~~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~   97 (117)
T 4bbq_A           18 CGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGL   97 (117)
T ss_dssp             CSCSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCE
T ss_pred             CCCCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceEEeeecCCeEECCCCCCCcccc
Confidence            9999999999999875432110      00   11222333333444433333 23589999999999999999865543


Q ss_pred             C----CCCccccCCC
Q 002926          237 S----SGPYLCPKHT  247 (864)
Q Consensus       237 P----~g~W~CP~C~  247 (864)
                      .    ...|.||.|.
T Consensus        98 ~~~~~~~~~~C~~C~  112 (117)
T 4bbq_A           98 LNEELPNCWECPKCY  112 (117)
T ss_dssp             ECSSSSSEEECTTTC
T ss_pred             ccccCCCCeECCCCc
Confidence            3    2359999985

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=97.94  E-value=1.3e-06  Score=74.93  Aligned_cols=47  Identities=32%  Similarity=0.926  Sum_probs=36.8

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.+.   +..||+||.|..|||..|+++....     .  ...|+|+.|+.
T Consensus        20 ~~C-iC~~~~~---~~~MIqCd~C~~WfH~~Cvgi~~~~-----~--~~~~~C~~C~~   66 (68)
T 3o70_A           20 VTC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRD   66 (68)
T ss_dssp             CCS-TTCCCCT---TCCEEECTTTCCEEETTTTTCCTTS-----C--CSSCCCHHHHT
T ss_pred             eEe-ECCCcCC---CCCEEECCCCCccccccccCcCccc-----C--CCcEECCCCCC
Confidence            467 8887654   5679999999999999999986431     1  24899999974

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.91  E-value=2.4e-06  Score=73.48  Aligned_cols=49  Identities=29%  Similarity=0.632  Sum_probs=36.8

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.+.+  +..||+||.|..|||..|+++....      .....|+|+.|+.
T Consensus        17 ~~C-~C~~~~~~--g~~mI~Cd~C~~W~H~~Cvg~~~~~------~~~~~~~C~~C~~   65 (72)
T 1wee_A           17 VDC-KCGTKDDD--GERMLACDGCGVWHHTRCIGINNAD------ALPSKFLCFRCIE   65 (72)
T ss_dssp             ECC-TTCCCSCC--SSCEEECSSSCEEEETTTTTCCTTS------CCCSCCCCHHHHH
T ss_pred             eEe-eCCCccCC--CCcEEECCCCCCccCCeeeccCccc------cCCCcEECCCccC
Confidence            367 58876533  4469999999999999999986431      1235899999975

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.90  E-value=6.1e-06  Score=74.66  Aligned_cols=43  Identities=21%  Similarity=0.722  Sum_probs=35.5

Q ss_pred             cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|++... ..||.|+.  |. .|||..|++  +...|.+.|+||.|.
T Consensus        38 yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~   83 (91)
T 1weu_A           38 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   83 (91)
T ss_dssp             CS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTC
T ss_pred             EE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCcc
Confidence            56 7787543 47999999  76 799999999  566778999999986

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=97.88  E-value=1.1e-05  Score=69.71  Aligned_cols=47  Identities=28%  Similarity=0.765  Sum_probs=36.2

Q ss_pred             CcccccccccccccccCcccCCceeecCC--CC-ccccccccccCccccccCCCCCcCCCCC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      .....+| +|.....      ..||.|+.  |. .+||+.|+++...     +.+.|+|+.|
T Consensus        13 ~~~~~~C-~C~~~~~------g~MI~CD~~~C~~~wfH~~Cvgl~~~-----p~g~w~Cp~C   62 (71)
T 1wen_A           13 PNEPTYC-LCHQVSY------GEMIGCDNPDCSIEWFHFACVGLTTK-----PRGKWFCPRC   62 (71)
T ss_dssp             TTSCCCS-TTCCCSC------SSEECCSCSSCSCCCEETTTTTCSSC-----CSSCCCCTTT
T ss_pred             CCCCCEE-ECCCCCC------CCEeEeeCCCCCCccEecccCCcCcC-----CCCCEECCCC
Confidence            3455689 7987431      28999999  88 6999999997543     3578999998

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=97.85  E-value=3.6e-06  Score=70.37  Aligned_cols=43  Identities=21%  Similarity=0.722  Sum_probs=35.8

Q ss_pred             cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+++.. ..||.|+.  |. .|||..|++  +..+|.+.|+||.|.
T Consensus        12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~   57 (60)
T 2vnf_A           12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   57 (60)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCcc
Confidence            56 7887654 47999999  66 899999999  677888999999875

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.84  E-value=2.1e-06  Score=84.30  Aligned_cols=51  Identities=33%  Similarity=0.791  Sum_probs=40.3

Q ss_pred             ccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          282 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       282 gnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      ..|| +|.+.|.+  ++.||+||.|+.|||..|+++.....     +....|+|+.|+.
T Consensus         8 ~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~Cv~~~~~~~-----~~~~~~~C~~C~~   58 (174)
T 2ri7_A            8 KLYC-ICKTPEDE--SKFYIGCDRCQNWYHGRCVGILQSEA-----ELIDEYVCPQCQS   58 (174)
T ss_dssp             CEET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCHHHH-----TTCSSCCCHHHHH
T ss_pred             CcEe-eCCCCCCC--CCCEeECCCCCchhChhhcCCchhhc-----cCccCeecCCCcc
Confidence            4588 99988643  46799999999999999999865532     2245899999985

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=97.81  E-value=4.6e-06  Score=69.60  Aligned_cols=43  Identities=21%  Similarity=0.718  Sum_probs=35.7

Q ss_pred             cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+++.. ..|+.|+.  |. .|||..|++  +...|.+.|+||.|.
T Consensus        11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~   56 (59)
T 3c6w_A           11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCV   56 (59)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCcc
Confidence            56 7887643 47999999  77 699999999  667788999999985

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.79  E-value=2.6e-06  Score=73.87  Aligned_cols=50  Identities=36%  Similarity=0.882  Sum_probs=37.5

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.|.+  +..||+||.|..|||..|+++..+....     ...|+|+.|+.
T Consensus        11 ~yC-iC~~~~~~--~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~-----~~~~~C~~C~~   60 (75)
T 3kqi_A           11 VYC-VCRLPYDV--TRFMIECDACKDWFHGSCVGVEEEEAPD-----IDIYHCPNCEK   60 (75)
T ss_dssp             EET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCTTTGGG-----BSSCCCHHHHH
T ss_pred             eEE-ECCCcCCC--CCCEEEcCCCCCCEecccccccccccCC-----CCEEECCCCcc
Confidence            356 78887643  4579999999999999999986543211     23799999974

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=97.77  E-value=7.8e-06  Score=73.84  Aligned_cols=43  Identities=23%  Similarity=0.566  Sum_probs=34.7

Q ss_pred             cccccccCCCCCceeecCCCC---CcccccccCCCCcCCCCCCccccC-CC
Q 002926          201 ICEICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPK-HT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~---raYH~~CL~Ppl~svP~g~W~CP~-C~  247 (864)
                      +| +|+.+.. ..||.|+.|+   .|||..|++  +...|.+.|+||. |.
T Consensus        28 yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           28 YC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK   74 (90)
T ss_dssp             CS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred             EE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence            45 6776544 3799999976   899999999  5667789999999 64

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=97.77  E-value=8e-06  Score=69.94  Aligned_cols=45  Identities=22%  Similarity=0.551  Sum_probs=36.9

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+.+.+...||.|+.|..|||..|++.....++ ..|+|+.|.
T Consensus        21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~   65 (68)
T 3o70_A           21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR   65 (68)
T ss_dssp             CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHH
T ss_pred             Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCC
Confidence            45 8888776667999999999999999997655444 689999885

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=97.73  E-value=7.2e-06  Score=69.11  Aligned_cols=43  Identities=23%  Similarity=0.685  Sum_probs=35.0

Q ss_pred             cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~--C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+++.. ..||.|+.  |. .|||..|++  +...|.+.|+||.|.
T Consensus        13 yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~   58 (62)
T 2g6q_A           13 YC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCR   58 (62)
T ss_dssp             ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcc
Confidence            56 7887643 37999999  55 999999999  556678999999985

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=97.69  E-value=2.7e-05  Score=70.82  Aligned_cols=45  Identities=22%  Similarity=0.617  Sum_probs=34.1

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      .| +|+...+.     ..||.|+.|.++||..|++++....   + ..|+|+.|.
T Consensus        30 rC-iC~~~~~~-----~~mi~Cd~C~~w~H~~C~~~~~~~~---p-~~w~C~~C~   74 (98)
T 2lv9_A           30 RC-ICGFTHDD-----GYMICCDKCSVWQHIDCMGIDRQHI---P-DTYLCERCQ   74 (98)
T ss_dssp             CC-TTSCCSCS-----SCEEEBTTTCBEEETTTTTCCTTSC---C-SSBCCTTTS
T ss_pred             Ee-ECCCccCC-----CcEEEcCCCCCcCcCcCCCCCccCC---C-CCEECCCCc
Confidence            46 67664422     3899999999999999999975432   2 479999983

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=97.68  E-value=6.4e-06  Score=66.71  Aligned_cols=46  Identities=33%  Similarity=0.962  Sum_probs=35.1

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      || +|.+.+.   +..||+||.|..|||..|+++..+.     .  ...|+|+.|+.
T Consensus         6 ~C-~C~~~~~---~~~MI~Cd~C~~W~H~~Cvgi~~~~-----~--~~~~~C~~C~~   51 (52)
T 3o7a_A            6 TC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRD   51 (52)
T ss_dssp             CS-TTCCBCT---TCCEEECTTTCCEEETTTTTCCGGG-----C--CSSCCCHHHHT
T ss_pred             EE-EeCCcCC---CCCEEEcCCCCccccccccCCCccc-----C--CCcEECcCCCC
Confidence            44 5776543   5689999999999999999987542     1  24899999963

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.64  E-value=1.7e-05  Score=68.15  Aligned_cols=46  Identities=20%  Similarity=0.498  Sum_probs=36.0

Q ss_pred             cccccccCCCCC-ceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+.+.++. .||.|+.|..|||..|++..........|+|+.|.
T Consensus        18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~   64 (72)
T 1wee_A           18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI   64 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHH
T ss_pred             Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCcc
Confidence            45 688876544 69999999999999999975433335789999985

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.64  E-value=1.3e-05  Score=67.08  Aligned_cols=47  Identities=19%  Similarity=0.521  Sum_probs=36.1

Q ss_pred             cccccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCccccCCC
Q 002926          201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~  247 (864)
                      +|.+|+++.+ ...||.|+.|..|||..|++....... ...|+|+.|.
T Consensus         8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~   56 (64)
T 1we9_A            8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS   56 (64)
T ss_dssp             CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHH
T ss_pred             CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCc
Confidence            4557777754 347999999999999999996544333 3689999985

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=97.56  E-value=1.5e-05  Score=76.37  Aligned_cols=52  Identities=21%  Similarity=0.641  Sum_probs=41.2

Q ss_pred             CcccccccccccccccCcccCCceeecCCCCccccccccccCcccc---cc-CCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR---DL-FHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~---~~-v~~~~W~CpeCk  200 (864)
                      ..++++|.+|..+|        +|++|+.|+++||..|+.++..+.   .+ .+.+.|.|..|.
T Consensus        54 Dg~~~~C~vC~dGG--------~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~  109 (129)
T 3ql9_A           54 DGMDEQCRWCAEGG--------NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH  109 (129)
T ss_dssp             TSCBSSCTTTCCCS--------EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred             CCCCCcCeecCCCC--------eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence            45677999999988        999999999999999999763211   11 146899999983

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=97.54  E-value=2.1e-05  Score=65.56  Aligned_cols=45  Identities=27%  Similarity=0.750  Sum_probs=34.9

Q ss_pred             ccccccccccccccCcccCCceeecCC--CC-ccccccccccCccccccCCCCCcCCCCC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ...+| +|+....      .+||.|+.  |. .+||..|+++...     +.+.|+|+.|
T Consensus         8 e~~yC-~C~~~~~------g~mi~CD~~~C~~~wfH~~Cvgl~~~-----p~~~w~Cp~C   55 (59)
T 3c6w_A            8 EPTYC-LCHQVSY------GEMIGCDNPDCPIEWFHFACVDLTTK-----PKGKWFCPRC   55 (59)
T ss_dssp             CCEET-TTTEECC------SEEEECSCTTCSSCEEETGGGTCSSC-----CSSCCCCHHH
T ss_pred             CCcEE-ECCCCCC------CCeeEeeCCCCCCCCEecccCCcccC-----CCCCEECcCc
Confidence            44578 8987431      28999999  88 6999999997543     3478999988

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=97.53  E-value=2.2e-05  Score=66.10  Aligned_cols=45  Identities=27%  Similarity=0.725  Sum_probs=35.1

Q ss_pred             ccccccccccccccCcccCCceeecCC--CC-ccccccccccCccccccCCCCCcCCCCC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ...+| +|.....      .+||.|+.  |+ .+||+.|+++...     +.+.|+|+.|
T Consensus        10 e~~yC-~C~~~~~------g~MI~CD~c~C~~~WfH~~Cvgl~~~-----p~~~w~Cp~C   57 (62)
T 2g6q_A           10 EPTYC-LCNQVSY------GEMIGCDNEQCPIEWFHFSCVSLTYK-----PKGKWYCPKC   57 (62)
T ss_dssp             CCEET-TTTEECC------SEEEECSCTTCSSCEEETGGGTCSSC-----CSSCCCCHHH
T ss_pred             CCcEE-ECCCCCC------CCeeeeeCCCCCcccEecccCCcCcC-----CCCCEECcCc
Confidence            44588 8987431      28999999  66 9999999998543     3579999988

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=97.53  E-value=2.3e-05  Score=65.52  Aligned_cols=45  Identities=27%  Similarity=0.767  Sum_probs=34.7

Q ss_pred             ccccccccccccccCcccCCceeecCC--CC-ccccccccccCccccccCCCCCcCCCCC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~--C~-raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ...+| +|+....      ..||.|+.  |. .+||+.|+++...     +.+.|+|+.|
T Consensus         9 e~~~C-~C~~~~~------g~mi~CD~cdC~~~wfH~~Cvgl~~~-----p~g~w~C~~C   56 (60)
T 2vnf_A            9 EPTYC-LCHQVSY------GEMIGCDNPDCSIEWFHFACVGLTTK-----PRGKWFCPRC   56 (60)
T ss_dssp             CCEET-TTTEECC------SEEEECSCTTCSSCEEETGGGTCSSC-----CSSCCCCHHH
T ss_pred             CCCEE-ECCCcCC------CCEEEeCCCCCCCceEehhcCCCCcC-----CCCCEECcCc
Confidence            34578 8987531      28999999  76 8999999997443     3588999988

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=97.51  E-value=8.2e-06  Score=78.12  Aligned_cols=44  Identities=18%  Similarity=0.508  Sum_probs=37.9

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCc-----CC--CCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK-----NV--SSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~-----sv--P~g~W~CP~C~  247 (864)
                      +|.+|+.+|   .++.|+.|+++||..|+.|++.     .+  +.+.|.|+.|.
T Consensus        59 ~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~  109 (129)
T 3ql9_A           59 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH  109 (129)
T ss_dssp             SCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred             cCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence            788888887   8999999999999999998742     33  78999999985

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.50  E-value=2e-05  Score=67.91  Aligned_cols=43  Identities=26%  Similarity=0.638  Sum_probs=34.1

Q ss_pred             cccccccCCCCCceeecCCCC---CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~---raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+.... ..||.|+.|+   .|||..|+.  +...|.+.|+||.|.
T Consensus         8 yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~   53 (70)
T 1x4i_A            8 YC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCT   53 (70)
T ss_dssp             CS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHH
T ss_pred             EE-EcCCCCC-CCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCC
Confidence            44 4776643 3899999975   899999999  455678999999985

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=97.47  E-value=2.5e-05  Score=63.35  Aligned_cols=47  Identities=19%  Similarity=0.497  Sum_probs=35.5

Q ss_pred             cccccccCCCC-CceeecC-CCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~-~~LL~Cd-~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      .|.+|+++.++ ..|+.|+ .|..|||..|++..........|+|+.|.
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            44589988753 4699999 99999999999964333224789999973

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=97.43  E-value=4.8e-05  Score=68.71  Aligned_cols=45  Identities=22%  Similarity=0.585  Sum_probs=34.5

Q ss_pred             ccccccccccccccCcccCCceeecCCCC---ccccccccccCccccccCCCCCcCCCC-C
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCG---KKYHRNCLKNWAQNRDLFHWSSWKCPS-C  199 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~---raYH~~CL~p~~~~~~~v~~~~W~Cpe-C  199 (864)
                      ...+| +|.....      .+||.||.|.   .+||+.|+++...     +.+.|+|+. |
T Consensus        25 ~~~yC-iC~~~~~------g~MI~CD~c~C~~eWfH~~CVgl~~~-----p~~~W~Cp~cC   73 (90)
T 2jmi_A           25 EEVYC-FCRNVSY------GPMVACDNPACPFEWFHYGCVGLKQA-----PKGKWYCSKDC   73 (90)
T ss_dssp             CSCCS-TTTCCCS------SSEECCCSSSCSCSCEETTTSSCSSC-----TTSCCCSSHHH
T ss_pred             CCcEE-EeCCCCC------CCEEEecCCCCccccCcCccCCCCcC-----CCCCccCChhh
Confidence            44588 8986431      2799999965   8999999998543     347999998 6

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.42  E-value=2.9e-05  Score=67.81  Aligned_cols=47  Identities=23%  Similarity=0.580  Sum_probs=36.2

Q ss_pred             cccccccCCC-CCceeecCCCCCcccccccCCCCcCC-CCCCccccCCCc
Q 002926          201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~sv-P~g~W~CP~C~~  248 (864)
                      +| +|+.+.+ ...||+|+.|..|||..|++...... ....|+|+.|..
T Consensus        14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   62 (79)
T 1wep_A           14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA   62 (79)
T ss_dssp             CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred             EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence            45 8888765 45799999999999999999544332 236899999863

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.42  E-value=1.3e-05  Score=69.35  Aligned_cols=46  Identities=28%  Similarity=0.728  Sum_probs=36.0

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCC-----CCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-----SSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~sv-----P~g~W~CP~C~  247 (864)
                      +| +|+.+.+...||.|+.|..|||..|++......     ....|+|+.|.
T Consensus        18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~   68 (76)
T 1wem_A           18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT   68 (76)
T ss_dssp             CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHH
T ss_pred             EE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCc
Confidence            45 788887656899999999999999999643321     34689999985

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=97.38  E-value=6.2e-05  Score=60.91  Aligned_cols=43  Identities=21%  Similarity=0.492  Sum_probs=35.8

Q ss_pred             ccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          204 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       204 VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|+.+.+...||.|+.|..|||..|++.....++ ..|+|+.|.
T Consensus         8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~   50 (52)
T 3o7a_A            8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR   50 (52)
T ss_dssp             TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred             EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence            8888877668999999999999999997654444 689999874

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.32  E-value=3.2e-05  Score=66.97  Aligned_cols=47  Identities=26%  Similarity=0.600  Sum_probs=36.3

Q ss_pred             cccccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCccccCCCc
Q 002926          201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~~  248 (864)
                      +| +|+.+.+ ...||.|+.|..|||..|++......+ ...|+|+.|..
T Consensus        12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~   60 (75)
T 3kqi_A           12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK   60 (75)
T ss_dssp             ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred             EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence            44 8888754 457999999999999999996544433 36799999863

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.29  E-value=6.2e-05  Score=65.70  Aligned_cols=46  Identities=22%  Similarity=0.554  Sum_probs=35.6

Q ss_pred             cccccccCCCCCceeecC--CCCCcccccccCCCCcC-----CCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKN-----VSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd--~C~raYH~~CL~Ppl~s-----vP~g~W~CP~C~  247 (864)
                      +| +|+...+...||.|+  .|..|||..|++.....     .....|+|+.|.
T Consensus        18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~   70 (78)
T 1wew_A           18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR   70 (78)
T ss_dssp             CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred             Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCC
Confidence            45 788875556899999  99999999999954332     123689999985

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.24  E-value=5.4e-05  Score=69.79  Aligned_cols=48  Identities=21%  Similarity=0.497  Sum_probs=36.6

Q ss_pred             cccccccCCCC-CceeecC-CCCCcccccccCCCCcC------CCCCCccccCCCc
Q 002926          201 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~-~~LL~Cd-~C~raYH~~CL~Ppl~s------vP~g~W~CP~C~~  248 (864)
                      .|.+|+++.++ ..|+.|+ .|..|||..|++.....      .|...|+||.|..
T Consensus         5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~   60 (105)
T 2xb1_A            5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK   60 (105)
T ss_dssp             BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred             CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence            56788887433 4799998 99999999999954321      3567899999863

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=97.23  E-value=2.4e-05  Score=66.57  Aligned_cols=47  Identities=19%  Similarity=0.499  Sum_probs=36.1

Q ss_pred             cccccccCCCC-CceeecC-CCCCcccccccCCCCcC------CCCCCccccCCC
Q 002926          201 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~-~~LL~Cd-~C~raYH~~CL~Ppl~s------vP~g~W~CP~C~  247 (864)
                      .|.+|+++.++ ..|+.|+ .|..|||..|++.....      .|...|+|+.|.
T Consensus        10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A           10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            56678887543 4799999 99999999999954321      366789999874

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=97.22  E-value=4.1e-05  Score=87.16  Aligned_cols=50  Identities=34%  Similarity=0.905  Sum_probs=38.5

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.|.+  ++.||+||.|+.|||..|+++..+....     ...|+|+.|+.
T Consensus        38 ~yC-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~   87 (488)
T 3kv5_D           38 VYC-VCRQPYDV--NRFMIECDICKDWFHGSCVGVEEHHAVD-----IDLYHCPNCAV   87 (488)
T ss_dssp             EET-TTTEECCT--TSCEEEBTTTCCEEEHHHHTCCGGGGGG-----EEEBCCHHHHH
T ss_pred             eEE-eCCCcCCC--CCCeEEccCCCCceeeeecCcCcccccC-----CCEEECCCCcC
Confidence            467 89887743  4679999999999999999987553221     23799999984

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.20  E-value=3.4e-05  Score=75.73  Aligned_cols=46  Identities=28%  Similarity=0.696  Sum_probs=35.6

Q ss_pred             cccccccCCC-CCceeecCCCCCcccccccCCCCcC-CCCCCccccCCC
Q 002926          201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKN-VSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~s-vP~g~W~CP~C~  247 (864)
                      +| +|+.+++ ...|+.|+.|..|||..|++..... ...+.|+|+.|.
T Consensus        10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~   57 (174)
T 2ri7_A           10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ   57 (174)
T ss_dssp             ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHH
T ss_pred             Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCc
Confidence            56 7787754 3469999999999999999854332 235789999986

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=97.19  E-value=0.00013  Score=62.17  Aligned_cols=44  Identities=25%  Similarity=0.471  Sum_probs=33.3

Q ss_pred             ccccCCCCCceeecC--CCCCcccccccCCCCcCC----CCCCccccCCC
Q 002926          204 ICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNV----SSGPYLCPKHT  247 (864)
Q Consensus       204 VCgk~gd~~~LL~Cd--~C~raYH~~CL~Ppl~sv----P~g~W~CP~C~  247 (864)
                      +|+...+...||.|+  .|..|||..|++......    ....|+|+.|.
T Consensus        14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr   63 (68)
T 2rsd_A           14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR   63 (68)
T ss_dssp             TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred             ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence            788776667899999  599999999998533221    12479999885

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=5.7e-05  Score=65.05  Aligned_cols=45  Identities=33%  Similarity=0.885  Sum_probs=34.0

Q ss_pred             cccccccccccCCCCCCceeccCCC---CccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQ---RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~---~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.+    .+.||+||.|+   .|||..|+++..        .+...|+|+.|..
T Consensus         7 ~yC-~C~~~~----~g~MI~CD~cdC~~~WfH~~Cvgl~~--------~p~~~w~Cp~C~~   54 (70)
T 1x4i_A            7 GYC-ICNQVS----YGEMVGCDNQDCPIEWFHYGCVGLTE--------APKGKWYCPQCTA   54 (70)
T ss_dssp             CCS-TTSCCC----CSSEECCSCTTCSCCCEEHHHHTCSS--------CCSSCCCCHHHHH
T ss_pred             eEE-EcCCCC----CCCEeEeCCCCCCccCCcccccccCc--------CCCCCEECCCCCc
Confidence            466 477653    23799999975   899999999753        2456899999973

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=97.16  E-value=5.1e-05  Score=85.57  Aligned_cols=49  Identities=39%  Similarity=0.937  Sum_probs=38.3

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      || +|.+.|.  +++.||+||.|+.|||..|+++..+....     ...|+|+.|+.
T Consensus         7 yC-iC~~~~d--~~~~MIqCD~C~~WfH~~CVgi~~~~~~~-----~~~y~C~~C~~   55 (447)
T 3kv4_A            7 YC-LCRLPYD--VTRFMIECDMCQDWFHGSCVGVEEEKAAD-----IDLYHCPNCEV   55 (447)
T ss_dssp             ET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCHHHHTT-----EEECCCHHHHH
T ss_pred             EE-eCCCcCC--CCCCeEEcCCCCcccccccCCcCcccccC-----CCEEECCCCcc
Confidence            45 7888773  35679999999999999999987654321     24799999985

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=97.06  E-value=0.0002  Score=65.87  Aligned_cols=42  Identities=36%  Similarity=0.912  Sum_probs=33.7

Q ss_pred             CceeccCCCCccccccCCCChHHHhhhcc-CCCCceeCCCCCC
Q 002926          299 PMVCCDVCQRWVHCQCDGISDEKYLQFQV-DGNLQYRCPTCRG  340 (864)
Q Consensus       299 ~MVqCD~C~~WfH~eCd~l~dE~y~~~gi-d~~~~Y~CptCr~  340 (864)
                      .||+||.|..|||..|.++.++.+..+.. +....|.|+.|..
T Consensus         1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~   43 (140)
T 2ku7_A            1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE   43 (140)
T ss_dssp             CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred             CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence            48999999999999999987765555543 3356899999974

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.01  E-value=0.00033  Score=62.59  Aligned_cols=54  Identities=24%  Similarity=0.678  Sum_probs=40.1

Q ss_pred             CCcccccccccccccccCcccCCceeecCCCCccccccccccCc--------ccc-ccCCCCCcCCCCC
Q 002926          140 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA--------QNR-DLFHWSSWKCPSC  199 (864)
Q Consensus       140 ~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~--------~~~-~~v~~~~W~CpeC  199 (864)
                      ...++++|.+|..-.      .++|+.|..|++.||..||....        +.. .+.+...|.|+.|
T Consensus        11 ~~~~D~~C~VC~~~t------~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C   73 (89)
T 1wil_A           11 PVVNDEMCDVCEVWT------AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCCSCCCTTTCCCC------SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             CCCCCcccCcccccc------ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence            345889999999644      23899999999999999997641        111 1124579999998

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=96.94  E-value=0.00036  Score=59.39  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             cccccccccccccccCcccCCceeecCC--CCccccccccccCccccccC-CCCCcCCCCCc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKS--CGKKYHRNCLKNWAQNRDLF-HWSSWKCPSCR  200 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~--C~raYH~~CL~p~~~~~~~v-~~~~W~CpeCk  200 (864)
                      .....| +|+....     ...||.|+.  |..+||..|+++...+.... ....|+|+.|+
T Consensus         8 e~~v~C-~C~~~~~-----~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr   63 (68)
T 2rsd_A            8 EAKVRC-ICSSTMV-----NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR   63 (68)
T ss_dssp             SCEECC-TTCCCSC-----CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred             CCCEEe-ECCCCcC-----CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence            344578 7976432     238999994  99999999999865432211 12479998874

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=96.92  E-value=0.00043  Score=79.21  Aligned_cols=42  Identities=29%  Similarity=0.777  Sum_probs=33.5

Q ss_pred             CCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          294 DSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       294 D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .+.+..||+||.|..|||..|++++.+....     ...|+|+.|..
T Consensus        52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~-----~~~y~Cp~C~~   93 (528)
T 3pur_A           52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYL-----YEKFFCPKCVP   93 (528)
T ss_dssp             TTSTTSEEECTTTCCEEEGGGTTCCGGGTTT-----EEECCCTTTHH
T ss_pred             CCcCCCEEECCCCCcCCCCcCCCCChhHhcC-----CCeEECcCCcC
Confidence            3456689999999999999999987654322     24899999985

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.86  E-value=0.00045  Score=60.24  Aligned_cols=54  Identities=24%  Similarity=0.417  Sum_probs=38.4

Q ss_pred             CcccccccccccccccCcccCCceeecC--CCCccccccccccCcccccc--CCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDL--FHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~--v~~~~W~CpeCk  200 (864)
                      .....+| +|+....     ...||.|+  .|..+||..|+++.......  .....|+|+.|.
T Consensus        13 ~~~~~~C-iC~~~~~-----~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~   70 (78)
T 1wew_A           13 PEIKVRC-VCGNSLE-----TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR   70 (78)
T ss_dssp             CCCCCCC-SSCCCCC-----CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred             CCCCEEe-ECCCcCC-----CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCC
Confidence            3455688 7987632     23899999  99999999999997653210  113689998873

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=96.73  E-value=0.00026  Score=71.32  Aligned_cols=47  Identities=32%  Similarity=0.727  Sum_probs=34.9

Q ss_pred             cccccccCCCCC----ceeecCCCCCcccccccCCCCc------CCC-CCCccccCCC
Q 002926          201 ICEICRRTGDPN----KFMFCRRCDAAYHCYCQHPPHK------NVS-SGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~----~LL~Cd~C~raYH~~CL~Ppl~------svP-~g~W~CP~C~  247 (864)
                      +|.+|+++.+++    .||.|+.|..|||..|++....      ..| ...|+||.|.
T Consensus         4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~   61 (183)
T 3lqh_A            4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT   61 (183)
T ss_dssp             BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTC
T ss_pred             cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCC
Confidence            567777765554    3999999999999999996431      112 2479999986

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=96.45  E-value=0.0011  Score=66.51  Aligned_cols=48  Identities=17%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             cCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCCC
Q 002926          293 RDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC  342 (864)
Q Consensus       293 ~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~~  342 (864)
                      ...++..||+|..|.+|||..|+......  .+..+..+.|.|..|....
T Consensus        13 ~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~--~lp~~~fY~F~C~~C~~~g   60 (177)
T 3rsn_A           13 GRQLGEVELQCGICTKWFTADTFGIDTSS--CLPFMTNYSFHCNVCHHSG   60 (177)
T ss_dssp             TCCTTSCEEECTTTCCEEEGGGGTCCCTT--CCTTCCSEEEECTTTSTTS
T ss_pred             CCCCCceeEeeccccceecHHHhcccccC--ccccceeEEEEccccCCCC
Confidence            34567889999999999999999843211  1223467899999998743

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.10  E-value=0.01  Score=51.72  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             ccccceEEEEecCCCceeeeeeEEeec-CeeEEEEEecCCcccceecCceeeEeeecccccc
Q 002926          802 DAIGKRVEVHQQSDNSWHKGVVTDTVE-GTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS  862 (864)
Q Consensus       802 da~~krvev~~~sd~~w~~g~v~~~~~-~~~~~~v~~d~~~~~~~~~gk~~vr~~~~~~k~~  862 (864)
                      =.+|-+|.-.++ ||.|+.++|+.|.. |+  ..|.|+|+..++|.+-  .||-||..+|+.
T Consensus        10 ~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~--~~V~f~Dyn~e~v~~~--~lrplp~~~k~~   66 (74)
T 2equ_A           10 FKAGEEVLARWT-DCRYYPAKIEAINKEGT--FTVQFYDGVIRCLKRM--HIKAMPEDAKGQ   66 (74)
T ss_dssp             CCTTCEEEEECS-SSSEEEEEEEEESTTSS--EEEEETTSCEEEECGG--GEECCCGGGTCC
T ss_pred             CCCCCEEEEECC-CCCEEEEEEEEECCCCE--EEEEEecCCeEEecHH--HCeeCChhHhhc
Confidence            468999999996 99999999999976 55  9999999988888654  699999877754

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=96.04  E-value=0.0007  Score=77.13  Aligned_cols=47  Identities=23%  Similarity=0.566  Sum_probs=35.6

Q ss_pred             cccccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCccccCCCc
Q 002926          201 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~~  248 (864)
                      +| +|+.+.+ ...|+.|+.|..|||..|++....... ...|+|+.|..
T Consensus        39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   87 (488)
T 3kv5_D           39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV   87 (488)
T ss_dssp             ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred             EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence            44 8888754 457999999999999999995443322 25799999863

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=96.00  E-value=0.0015  Score=58.38  Aligned_cols=46  Identities=17%  Similarity=0.488  Sum_probs=34.5

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCC------------CcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP------------HKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Pp------------l~svP~g~W~CP~C~  247 (864)
                      .|.||..-. .+.++.|..|.+.||..|+.+.            +...+...|.|+.|-
T Consensus        17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            677777433 2378999999999999999863            222356789999974

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=95.82  E-value=0.00077  Score=76.06  Aligned_cols=44  Identities=23%  Similarity=0.534  Sum_probs=34.4

Q ss_pred             ccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCccccCCC
Q 002926          204 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHT  247 (864)
Q Consensus       204 VCgk~gd-~~~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~  247 (864)
                      +|+.+.+ ...|+.|+.|..|||..|++....... ...|+|+.|.
T Consensus         9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~   54 (447)
T 3kv4_A            9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE   54 (447)
T ss_dssp             TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHH
T ss_pred             eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCc
Confidence            8888754 457999999999999999995433322 3679999985

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=95.62  E-value=0.016  Score=52.00  Aligned_cols=58  Identities=21%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             HhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 002926          798 KLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ  859 (864)
Q Consensus       798 ~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~gk~~vr~~~~~~  859 (864)
                      ....-.+|.+|.-.| +|+.|+.++|+.|.+- .+..|.|+||..+||..-  .||-+|..|
T Consensus        18 ~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~--~IKp~~~~~   75 (85)
T 3qii_A           18 GSSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQ   75 (85)
T ss_dssp             ---CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG--GEEECC---
T ss_pred             CCcccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH--HcccCChhh
Confidence            345678999999999 9999999999999773 249999999999998864  467666655

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=95.52  E-value=0.012  Score=55.62  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 002926          800 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE  846 (864)
Q Consensus       800 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~  846 (864)
                      |.+-||+||-..|++|+.|+-|+|+.+ .|-.++.|.||||..++|-
T Consensus         3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~   48 (123)
T 2g3r_A            3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL   48 (123)
T ss_dssp             --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence            678999999999976668999999775 3344699999999999874

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=95.34  E-value=0.0066  Score=69.65  Aligned_cols=37  Identities=24%  Similarity=0.500  Sum_probs=29.8

Q ss_pred             CceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          162 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       162 eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ..||.||.|..+||..|++.......  ....|.||.|.
T Consensus        56 ~~mI~CD~C~~WfH~~CVgi~~~~a~--~~~~y~Cp~C~   92 (528)
T 3pur_A           56 FQWIGCDSCQTWYHFLCSGLEQFEYY--LYEKFFCPKCV   92 (528)
T ss_dssp             TSEEECTTTCCEEEGGGTTCCGGGTT--TEEECCCTTTH
T ss_pred             CCEEECCCCCcCCCCcCCCCChhHhc--CCCeEECcCCc
Confidence            46999999999999999999765322  23689999984

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=94.14  E-value=0.0036  Score=55.67  Aligned_cols=54  Identities=20%  Similarity=0.230  Sum_probs=45.9

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeecccc
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQK  860 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~gk~~vr~~~~~~k  860 (864)
                      .+|-+|.-.|+ ||.|+.++|+.|... .+..|.|+||..++|.+-  .||-+|++|+
T Consensus         8 kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s--~LrPl~~~~~   61 (81)
T 2ldm_A            8 QINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQN   61 (81)
Confidence            57889999997 999999999999642 259999999999999875  5888888886

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=95.12  E-value=0.012  Score=58.97  Aligned_cols=32  Identities=6%  Similarity=-0.064  Sum_probs=24.2

Q ss_pred             cccccccCCCCC-ceeecCCCCCcccccccCCCC
Q 002926          201 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPH  233 (864)
Q Consensus       201 ~C~VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl  233 (864)
                      +| +|+.+++.+ .+++|..|.+|||..|+....
T Consensus         7 yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~   39 (177)
T 3rsn_A            7 SV-DEENGRQLGEVELQCGICTKWFTADTFGIDT   39 (177)
T ss_dssp             -----CTTCCTTSCEEECTTTCCEEEGGGGTCCC
T ss_pred             EE-EcCCCCCCCceeEeeccccceecHHHhcccc
Confidence            45 899988766 599999999999999998543

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=94.91  E-value=0.021  Score=56.10  Aligned_cols=46  Identities=22%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 002926          800 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE  846 (864)
Q Consensus       800 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~  846 (864)
                      |.+-||.||--+|++++-|+.|+|+.+.+++ ++.|.||||..++|.
T Consensus         7 ~~~~iG~rVfArWsd~~yyYpG~V~~~~~~~-~Y~V~FdDG~~k~v~   52 (156)
T 1ssf_A            7 GNSFVGLRVVAKWSSNGYFYSGKITRDVGAG-KYKLLFDDGYECDVL   52 (156)
T ss_dssp             -CCSTTCEEEECSSCSSEEEEEEEEECCTTT-EEEEECTTSCEEEEE
T ss_pred             CcchhccEEEEEcCCCCcccccEEEEeccCC-EEEEEEcCCCeeEee
Confidence            7788999999999988899999999986555 699999999999996

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=94.86  E-value=0.04  Score=47.36  Aligned_cols=54  Identities=22%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 002926          802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ  859 (864)
Q Consensus       802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~gk~~vr~~~~~~  859 (864)
                      =.+|.+|...| +|+.|+.++|+.|.+- .+..|.|+||..+||.+-  .||-+|.-|
T Consensus         7 ~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~--~ikp~~~~~   60 (67)
T 3p8d_A            7 FQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQ   60 (67)
T ss_dssp             CCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG--GEEECC---
T ss_pred             cccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH--HcccCCccc
Confidence            36899999999 9999999999999774 349999999999999864  466666544

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=92.89  E-value=0.0049  Score=56.20  Aligned_cols=92  Identities=26%  Similarity=0.674  Sum_probs=57.3

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc------------------ccccc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------------ICEIC  205 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk------------------~C~VC  205 (864)
                      ...|.||...-.... .....+.-..|+..||..|+..+...       ...||.|+                  .|.+|
T Consensus         7 ~~~C~IC~~~~~~~~-~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC   78 (133)
T 4ap4_A            7 TVSCPICMDGYSEIV-QNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPTCRKKINHKRYHPIYIGSGTVSCPIC   78 (133)
T ss_dssp             SCBCTTTCCBHHHHH-HTTCCEEEETTCCEEEHHHHHHHHTT-------CSBCTTTCCBCTTTCEEECBCSSSSCBCTTT
T ss_pred             CCCCcccChhhhCcc-ccccCeEecCCCChhhHHHHHHHHHh-------CCCCCCCCCcCccccccccccCCCCCCCCCC
Confidence            458999986421000 00133455589999999999987542       23788887                  67777


Q ss_pred             ccCCCC----CceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          206 RRTGDP----NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       206 gk~gd~----~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      ...-..    ........|+..||..|+..-+..    ...||.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr  120 (133)
T 4ap4_A           79 MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCR  120 (133)
T ss_dssp             CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTC
T ss_pred             CCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCC
Confidence            653211    123455678888999998754322    23666664

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=92.52  E-value=0.16  Score=48.52  Aligned_cols=52  Identities=27%  Similarity=0.416  Sum_probs=41.3

Q ss_pred             cceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 002926          805 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ  859 (864)
Q Consensus       805 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~~gk~~vr~~~~~~  859 (864)
                      +-.|||.. +.|.|++|+|.+|.+..  +.|.|+|.-+..-.+.=+-|||.|...
T Consensus         5 ~~~VEV~~-~~G~~y~a~V~~v~~d~--~~V~f~n~w~~~~~vp~~~vRlpP~~~   56 (128)
T 3h8z_A            5 GLPVEVRG-SNGAFYKGFVKDVHEDS--VTIFFENNWQSERQIPFGDVRLPPPAD   56 (128)
T ss_dssp             TCEEEEEC-TTSCEEEEEEEEECSSE--EEEEETTCTTCCEEEEGGGEECCCCC-
T ss_pred             ccEEEEec-CCCCEEEEEEEEEeCCc--EEEEEccccCcceEechhhEEcCCCcc
Confidence            34699999 77999999999997777  999999865434456667899988653

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=92.49  E-value=0.03  Score=51.27  Aligned_cols=35  Identities=31%  Similarity=0.647  Sum_probs=27.5

Q ss_pred             ceeecCCCCCcccccccCCCC------cCCC-CCCccccCCC
Q 002926          213 KFMFCRRCDAAYHCYCQHPPH------KNVS-SGPYLCPKHT  247 (864)
Q Consensus       213 ~LL~Cd~C~raYH~~CL~Ppl------~svP-~g~W~CP~C~  247 (864)
                      .|+.|+.|..|||..|+....      ..+| ...|.||.|.
T Consensus         1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~   42 (140)
T 2ku7_A            1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT   42 (140)
T ss_dssp             CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred             CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence            389999999999999998532      3444 4579999986

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=92.42  E-value=0.017  Score=52.63  Aligned_cols=96  Identities=21%  Similarity=0.508  Sum_probs=54.4

Q ss_pred             eeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCCCCCCCCCCCccccccCccccCCCcccccccccccccccccc
Q 002926          214 FMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYR  293 (864)
Q Consensus       214 LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~CG~~~pgk~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~  293 (864)
                      .+.-..|+..||..|+..-+..    ...||.|..      ..........+            +......|++|...|.
T Consensus        26 ~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~------~~~~~~l~~l~------------i~~~~~~C~iC~~~~~   83 (133)
T 4ap4_A           26 LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK------KINHKRYHPIY------------IGSGTVSCPICMDGYS   83 (133)
T ss_dssp             CEEEETTCCEEEHHHHHHHHTT----CSBCTTTCC------BCTTTCEEECB------------CSSSSCBCTTTCCBHH
T ss_pred             CeEecCCCChhhHHHHHHHHHh----CCCCCCCCC------cCccccccccc------------cCCCCCCCCCCCCccc
Confidence            3355589999999999854322    236777652      11111100000            0112345888888775


Q ss_pred             CC-CCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          294 DS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       294 D~-dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      +. +....+....|...||..|+.   + +...      ...||.|+..
T Consensus        84 ~~~~~~~~~~~~~CgH~fc~~Ci~---~-~~~~------~~~CP~Cr~~  122 (133)
T 4ap4_A           84 EIVQNGRLIVSTECGHVFCSQCLR---D-SLKN------ANTCPTCRKK  122 (133)
T ss_dssp             HHHHTTCCEEEETTSBEEEHHHHH---H-HHHH------CSBCTTTCCB
T ss_pred             cccccCcceEeCCCCChhhHHHHH---H-HHHc------CCCCCCCCCc
Confidence            42 122334456799999999954   2 2111      3599999975

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=92.16  E-value=0.022  Score=63.19  Aligned_cols=91  Identities=14%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecC--CC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCR--RC  220 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd--~C  220 (864)
                      .+..|..|+.-..-..-..-+.+.|..|-..|+..-....        ...+    ..+|.+|+.++   .++.|+  .|
T Consensus        49 ~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D--------~DG~----~~yCr~C~~Gg---~l~~Cdn~~C  113 (386)
T 2pv0_B           49 IEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYD--------DDGY----QSYCSICCSGE---TLLICGNPDC  113 (386)
T ss_dssp             GGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBC--------SSSS----BCSCTTTCCCS---SCEECCSTTC
T ss_pred             ccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccC--------CCCC----cccceEcCCCC---eEEEeCCCCC
Confidence            4569999987532111222235678888888875433321        1222    22788888877   899999  99


Q ss_pred             CCcccccccCCCCcC------CCCCCccccCCCc
Q 002926          221 DAAYHCYCQHPPHKN------VSSGPYLCPKHTK  248 (864)
Q Consensus       221 ~raYH~~CL~Ppl~s------vP~g~W~CP~C~~  248 (864)
                      .+.|=..|+.-.+..      .....|.|-.|..
T Consensus       114 ~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p  147 (386)
T 2pv0_B          114 TRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP  147 (386)
T ss_dssp             CCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred             CcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence            999999999854321      2357899988763

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.80  E-value=0.21  Score=42.97  Aligned_cols=68  Identities=19%  Similarity=0.506  Sum_probs=47.2

Q ss_pred             CCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCC
Q 002926          260 GLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR  339 (864)
Q Consensus       260 ~ls~rW~~~~~lC~~C~elf~KgnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr  339 (864)
                      ...|+|......|..|...+  ...|++|...|...+.  .+.-..|.+.||..|+..    +..      ..-.||.||
T Consensus         6 ~~~w~~~~~~~~C~IC~~~~--~~~C~iC~~~~~~~~~--~~~~~~C~H~FH~~Ci~~----Wl~------~~~~CP~CR   71 (81)
T 2ecl_A            6 SGMWSWDVECDTCAICRVQV--MDACLRCQAENKQEDC--VVVWGECNHSFHNCCMSL----WVK------QNNRCPLCQ   71 (81)
T ss_dssp             CCCCCCSCCCSCBTTTTBCT--TSCCTTHHHHTCTTTC--CEEEETTSCEEEHHHHHH----HTT------TCCBCTTTC
T ss_pred             eEEeeecCCCCCCcccChhh--hccCcccccccCCCce--EEEeCCCCCccChHHHHH----HHH------hCCCCCCcC
Confidence            45678877778888888765  3469999988766543  233347999999999541    211      124899999


Q ss_pred             CC
Q 002926          340 GE  341 (864)
Q Consensus       340 ~~  341 (864)
                      ..
T Consensus        72 ~~   73 (81)
T 2ecl_A           72 QD   73 (81)
T ss_dssp             CB
T ss_pred             CC
Confidence            75

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=89.29  E-value=0.076  Score=52.55  Aligned_cols=90  Identities=13%  Similarity=0.261  Sum_probs=60.1

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccccccccCCCCCceeecC--CC
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCR--RC  220 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk~gd~~~LL~Cd--~C  220 (864)
                      .++.|..|+.-.....-..-..+.|..|-..|+..-......        ..    ..+|.+|+.++   .++.|+  .|
T Consensus        35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeD--------G~----~~yC~wC~~Gg---~l~~Cdn~~C   99 (159)
T 3a1b_A           35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDD--------GY----QSYCTICCGGR---EVLMCGNNNC   99 (159)
T ss_dssp             GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTT--------SS----BSSCTTTSCCS---EEEECSSTTT
T ss_pred             ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCC--------CC----cceeeEecCCC---eEEeeCCCCC
Confidence            467999998642211122224568888888887554443221        11    12788888877   899999  89


Q ss_pred             CCcccccccCCCCcC------CCCCCccccCCC
Q 002926          221 DAAYHCYCQHPPHKN------VSSGPYLCPKHT  247 (864)
Q Consensus       221 ~raYH~~CL~Ppl~s------vP~g~W~CP~C~  247 (864)
                      .+.|=..|+.-.+..      .....|.|-.|.
T Consensus       100 ~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~  132 (159)
T 3a1b_A          100 CRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG  132 (159)
T ss_dssp             CCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred             CCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence            999999999843322      356899998875

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=89.03  E-value=0.66  Score=38.11  Aligned_cols=52  Identities=8%  Similarity=0.033  Sum_probs=41.6

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeee
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVP  856 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~  856 (864)
                      .+|-.+-..++.||.|+.++|..|.....+..|.|.| |..+++.+..  +|-+|
T Consensus         5 ~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~--Lr~~~   57 (59)
T 1mhn_A            5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD--LLSPI   57 (59)
T ss_dssp             CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG--CBCTT
T ss_pred             CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH--eeCCC
Confidence            5788888888779999999999998633459999988 9888887653  55554

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=88.09  E-value=0.96  Score=39.34  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeeccc
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQKQ  859 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~~~  859 (864)
                      .+|..+-....-||.|+.++|+.|.....++.|.|-| |..++|.+-  .+|-||...
T Consensus        11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~~l   66 (78)
T 2d9t_A           11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQTEA   66 (78)
T ss_dssp             CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCCCC
T ss_pred             CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCHHH
Confidence            4788888888779999999999998744458999887 999999874  688887654

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=86.60  E-value=0.16  Score=50.19  Aligned_cols=50  Identities=20%  Similarity=0.614  Sum_probs=38.6

Q ss_pred             cccccccccccccccCcccCCceeecC--CCCccccccccccCcccc---ccCCCCCcCCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNR---DLFHWSSWKCPSC  199 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~---~~v~~~~W~CpeC  199 (864)
                      ..+.+|.+|..||        +|+.|+  .|.+.|-..||.....+.   .+.....|.|--|
T Consensus        77 G~~~yC~wC~~Gg--------~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C  131 (159)
T 3a1b_A           77 GYQSYCTICCGGR--------EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC  131 (159)
T ss_dssp             SSBSSCTTTSCCS--------EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTT
T ss_pred             CCcceeeEecCCC--------eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEec
Confidence            3567999999887        999999  899999999997754331   1234679987766

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=86.45  E-value=1.2  Score=38.78  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             hhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 002926          789 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ  857 (864)
Q Consensus       789 ~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~  857 (864)
                      ++|+..--....+=.+|..+-...+.||.|+.++|+.|.....++.|.|.| |..+++.+  ..+|-||.
T Consensus         5 ~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~--~~Lr~l~~   72 (77)
T 3pnw_C            5 ILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLL--SNIKPIQT   72 (77)
T ss_dssp             ------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEG--GGEECC--
T ss_pred             ccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeH--HHeEECCh
Confidence            344555445566678899999999889999999999997543448888877 88888775  34677764

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=86.41  E-value=1.2  Score=35.89  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=34.4

Q ss_pred             ccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 002926          804 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG  848 (864)
Q Consensus       804 ~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~g  848 (864)
                      +|-.+-...+.||.|+.++|..|.....+..|.|.| |..+++.+.
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~   49 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS   49 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence            577788888889999999999997533448888877 888877653

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=85.95  E-value=1.2  Score=37.32  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=37.5

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG  848 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~g  848 (864)
                      .+|-.+-..++.||.|+.++|..|.+...+..|.|.| |..+++.+.
T Consensus        10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~   56 (64)
T 4a4f_A           10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL   56 (64)
T ss_dssp             CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence            5788899999889999999999998632348899887 787777654

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=84.04  E-value=1.5  Score=39.28  Aligned_cols=54  Identities=7%  Similarity=-0.015  Sum_probs=41.6

Q ss_pred             ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 002926          802 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ  857 (864)
Q Consensus       802 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~  857 (864)
                      =.+|-.+-..++.||.|+.++|..|.....++.|.|.| |..++|.+-.  +|-|+.
T Consensus        11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~--Lrp~~~   65 (88)
T 1g5v_A           11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD--LLSPIC   65 (88)
T ss_dssp             CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG--CBCCC-
T ss_pred             CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH--cccCCh
Confidence            46799999999889999999999998633348898876 8888887653  555443

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.88  E-value=0.37  Score=42.08  Aligned_cols=49  Identities=20%  Similarity=0.713  Sum_probs=30.1

Q ss_pred             cccccccccccccccCcccCCceee-c--CCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLS-C--KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~-C--d~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ..++.|.||......    .+.|+. |  .+....||..||..|....     ....||-|
T Consensus        13 ~~~~~C~IC~~~~~~----~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~CplC   64 (80)
T 2d8s_A           13 SSQDICRICHCEGDD----ESPLITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCELC   64 (80)
T ss_dssp             TTSCCCSSSCCCCCS----SSCEECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCSSS
T ss_pred             CCCCCCeEcCccccC----CCeeEeccccCCcCCeeCHHHHHHHHhhC-----CCCCCCCC
Confidence            345689999965421    124442 2  2335999999999987642     23455555

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=83.45  E-value=0.68  Score=36.11  Aligned_cols=46  Identities=26%  Similarity=0.737  Sum_probs=30.1

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      +..|.||...-.    ..+..+....|+..||..|+..|...       ...||.|+
T Consensus         5 ~~~C~IC~~~~~----~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~Cr   50 (55)
T 1iym_A            5 GVECAVCLAELE----DGEEARFLPRCGHGFHAECVDMWLGS-------HSTCPLCR   50 (55)
T ss_dssp             SCCCTTTCCCCC----TTSCCEECSSSCCEECTTHHHHTTTT-------CCSCSSSC
T ss_pred             CCcCccCCcccc----CCCceEECCCCCCcccHHHHHHHHHc-------CCcCcCCC
Confidence            457999986431    11234444579999999999887642       34576663

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=81.80  E-value=0.32  Score=54.12  Aligned_cols=52  Identities=25%  Similarity=0.676  Sum_probs=38.9

Q ss_pred             CcccccccccccccccCcccCCceeecC--CCCccccccccccCcccc---ccCCCCCcCCCCCc
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNR---DLFHWSSWKCPSCR  200 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~---~~v~~~~W~CpeCk  200 (864)
                      ...+.+|.+|..+|        +|++|+  .|++.|-..|+.....+.   .+.....|.|--|.
T Consensus        90 DG~~~yCr~C~~Gg--------~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~  146 (386)
T 2pv0_B           90 DGYQSYCSICCSGE--------TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL  146 (386)
T ss_dssp             SSSBCSCTTTCCCS--------SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred             CCCcccceEcCCCC--------eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence            44677999999887        899999  999999999998754221   11224789877663

>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=82.43  E-value=0.29  Score=46.06  Aligned_cols=46  Identities=24%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             hccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 002926          799 LGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE  846 (864)
Q Consensus       799 lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~~~~~~~~  846 (864)
                      -|.=++|-.||+..+ |+.|-.|||..|. .-|+..|-||||+.+||.
T Consensus        54 kG~l~vG~~ve~~~~-~~~~~~~~I~~i~-D~S~YtVVFdDGD~ktLr   99 (118)
T 2lcd_A           54 KGPLRVGAIVETRTS-DGSFQEAIISKLT-DASWYTVVFDDGDERTLR   99 (118)
Confidence            477789999999996 7899999998874 568899999999999985

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.27  E-value=0.89  Score=39.43  Aligned_cols=36  Identities=25%  Similarity=0.625  Sum_probs=28.0

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCccc
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN  185 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~  185 (864)
                      ..+.|.||..--.       .-+.|..|+..||..|+..|...
T Consensus        14 ~i~~C~IC~~~i~-------~g~~C~~C~h~fH~~Ci~kWl~~   49 (74)
T 2ct0_A           14 AVKICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQS   49 (74)
T ss_dssp             SSCBCSSSCCBCS-------SSEECSSSCCEECHHHHHHHSTT
T ss_pred             CCCcCcchhhHcc-------cCCccCCCCchhhHHHHHHHHHh
Confidence            4468999997432       34588899999999999987753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=80.74  E-value=1.1  Score=37.46  Aligned_cols=38  Identities=16%  Similarity=0.538  Sum_probs=24.9

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ  184 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~  184 (864)
                      .....|.||...-.    .. ..+.--.|+..||..|+..|..
T Consensus        13 ~~~~~C~IC~~~~~----~~-~~~~~~~C~H~fc~~Ci~~~~~   50 (78)
T 2ect_A           13 GSGLECPVCKEDYA----LG-ESVRQLPCNHLFHDSCIVPWLE   50 (78)
T ss_dssp             SSSCCCTTTTSCCC----TT-SCEEECTTSCEEETTTTHHHHT
T ss_pred             CCCCCCeeCCcccc----CC-CCEEEeCCCCeecHHHHHHHHH
Confidence            44568999986421    11 2222236999999999987653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.13  E-value=0.47  Score=39.66  Aligned_cols=37  Identities=22%  Similarity=0.813  Sum_probs=26.2

Q ss_pred             ccccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926          143 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ  184 (864)
Q Consensus       143 ~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~  184 (864)
                      .+..|.||...-..     .+.+..-.|+..||..|+..|..
T Consensus        22 ~~~~C~IC~~~~~~-----~~~~~~l~C~H~fh~~Ci~~w~~   58 (75)
T 1x4j_A           22 EQTLCVVCMCDFES-----RQLLRVLPCNHEFHAKCVDKWLK   58 (75)
T ss_dssp             SCCEETTTTEECCB-----TCEEEEETTTEEEETTHHHHHHH
T ss_pred             CCCCCeECCcccCC-----CCeEEEECCCCHhHHHHHHHHHH
Confidence            45689999964211     13444556999999999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=80.09  E-value=0.59  Score=38.26  Aligned_cols=38  Identities=21%  Similarity=0.551  Sum_probs=25.7

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ  184 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~  184 (864)
                      .....|.||...-..     ...+....|+..||..|+..|..
T Consensus        12 ~~~~~C~IC~~~~~~-----~~~~~~~~C~H~fc~~Ci~~~~~   49 (69)
T 2kiz_A           12 DTEEKCTICLSILEE-----GEDVRRLPCMHLFHQVCVDQWLI   49 (69)
T ss_dssp             TCCCSBTTTTBCCCS-----SSCEEECTTSCEEEHHHHHHHHH
T ss_pred             CCCCCCeeCCccccC-----CCcEEEeCCCCHHHHHHHHHHHH
Confidence            345689999763211     12344457999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	864
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	2e-10
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.002
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	1e-09
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	3e-04
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	1e-08
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	3e-07
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	7e-04
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	2e-07
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.004
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.004
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	3e-07
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	5e-05
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	2e-06
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	5e-05
d1wepa_	79	g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus	2e-06
d1wepa_	79	g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus	5e-05
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	1e-05
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	5e-05
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	0.002
d1wewa_	78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	4e-05
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	9e-04

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 202 CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSC 252
           C++CR+ G+ +K + C  C+ A+H +C  P    V  G + CP    C   
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCP---ACQPA 50

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 147 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 202
           C++C     +      +++ C  C K +H  CL+             W+CP+C+  
Sbjct: 3   CKVCRKKGEDD-----KLILCDECNKAFHLFCLRPALYEVPD---GEWQCPACQPA 50

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 198 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSN 255
           S  IC +C++ GD    + C +C+  +H  C  P  ++V    + C            
Sbjct: 6   SATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 60

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 147 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICR 206
             +C V     C++   ++ C  C   +H +C     Q+        W C  C +    +
Sbjct: 7   ATICRV-----CQKPGDLVMCNQCEFCFHLDCHLPALQDVPG---EEWSCSLCHVLPDLK 58

Query: 207 RTGDPNKF 214
                 + 
Sbjct: 59  EEDVDLQA 66

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 285 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           C  C + Y   E    +CCD+C+ W H +C  I+  +    +     QY+CP+C 
Sbjct: 9   CGACGESYAADE--FWICCDLCEMWFHGKCVKITPARAEHIK-----QYKCPSCS 56

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 196 CPSCRICEICRRTGDPNKFM-FCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCHSCG 253
             S   C  C  +   ++F   C  C+  +H  C             Y CP  +      
Sbjct: 3   SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62

Query: 254 S 254
           S
Sbjct: 63  S 63

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPS 198
           G S ++  C  C              + C  C   +H  C+K      +      +KCPS
Sbjct: 1   GSSGSSGQCGACGESYAAD----EFWICCDLCEMWFHGKCVKITPARAEHI--KQYKCPS 54

Query: 199 CR 200
           C 
Sbjct: 55  CS 56

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 202 CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCG 253
            E CR   D  + + C  C ++YH +C +PP   + +G +LCP+ T     G
Sbjct: 9   MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 12/57 (21%)

Query: 283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            +C VC           ++CCD C    H  C      +        N ++ CP C 
Sbjct: 10  EFCRVCKDGGE------LLCCDTCPSSYHIHCLNPPLPE------IPNGEWLCPRCT 54

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 158 CERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 200
           C+    +L C +C   YH +CL              W CP C 
Sbjct: 15  CKDGGELLCCDTCPSSYHIHCLNPPLPEIP---NGEWLCPRCT 54

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC +C + + +     M+CCD C+ W H  C GIS+ +    + +    Y CP C 
Sbjct: 18  YC-ICRQPHNNRF---MICCDRCEEWFHGDCVGISEARGRLLERN-GEDYICPNCT 68

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 192 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYC-----QHPPHKNVSSGPYLCPK 245
                P+   C ICR+  +    + C RC+  +H  C             +   Y+CP 
Sbjct: 9   CEVYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPN 66

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 198 SCRICEICRRTGDPNKFM-FCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 245
           + ++   C    D  + M  C  C   +H  C    + +     +LC +
Sbjct: 14  NWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            C  C     D E   M+ CD C  W H +C GI++   L        ++ C  C 
Sbjct: 18  DC-KCGTKDDDGE--RMLACDGCGVWHHTRCIGINNADALPS------KFLCFRCI 64

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
           YC +C + Y  +    M+ C +CQ W H  C GI +E  +         Y CP C 
Sbjct: 14  YC-LCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENAVDID-----IYHCPDCE 61

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 198 SCRICEICRRTGDPNKFM-FCRRCDAAYHCYCQHPPHKNVSS-GPYLCPKHTKCHSC 252
              +  +CR+  + N FM  C  C   +H  C     +N      Y CP        
Sbjct: 10  LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 3/56 (5%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 339
            C VC ++   +    +V C  C    H  C                  + C  C 
Sbjct: 18  ACVVCRQMT-VASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRL--VWYCARCT 70

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 202 CEICRR--TGDPNKFMFCRRCDAAYHCYCQHPP----HKNVSSGPYLCPKHTKCHS 251
           C +CR+      N+ + C+ C   YH  C  P       N     + C + T+   
Sbjct: 19  CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 129 ASKDIAGEEQGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL 188
            S   +G +       + C +C            +++ C+ C   YH++C K    ++++
Sbjct: 1   GSSGSSGADDFAMEMGLACVVCRQMT---VASGNQLVECQECHNLYHQDCHKPQVTDKEV 57

Query: 189 FHWS-SWKCPSCR 200
                 W C  C 
Sbjct: 58  NDPRLVWYCARCT 70

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 341
            C VC     +++S        C  W H  C  + D+            + C  CR  
Sbjct: 18  RC-VCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPE-SFYCEICRLT 72

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 8/57 (14%)

Query: 146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 202
           +C +C     E      R   C    +  HR+CL  W          +  C  C + 
Sbjct: 8   VCWICN---EELGNERFRACGCTGELENVHRSCLSTWLTISR-----NTACQICGVV 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	864
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.9
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	98.8
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	98.56
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	98.47
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	98.41
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.39
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.25
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.19
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.07
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.07
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.0
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.97
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.86
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	97.76
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.73
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	97.71
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.69
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	97.46
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	97.44
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.31
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.15
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	96.98
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	95.09
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	90.87
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	90.84
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	88.21
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	87.37
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	87.26
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	85.32
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	84.83
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	84.16
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	83.67
d2zgwa1	47	Biotin--[acetyl-CoA-carboxylase] ligase C-terminal	83.22

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.4e-10  Score=89.27  Aligned_cols=49  Identities=31%  Similarity=0.954  Sum_probs=44.5

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcc
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC  249 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C  249 (864)
                      .|.+|+..++++.||.|+.|+.+||..|++|++..+|.+.|+|+.|..|
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            4778888888889999999999999999999999999999999998754

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.1e-09  Score=90.13  Aligned_cols=52  Identities=23%  Similarity=0.708  Sum_probs=45.1

Q ss_pred             CCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCCcccCC
Q 002926          198 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSC  252 (864)
Q Consensus       198 eCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~~C~~C  252 (864)
                      .|.+|.+|++++   .||.|+.|.++||..|+.|++..+|.+.|+|+.|..+...
T Consensus         6 ~c~~C~~C~~~~---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~   57 (70)
T d1fp0a1           6 SATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL   57 (70)
T ss_dssp             SSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCCCCCCcC---EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCcc
Confidence            367888888776   7999999999999999999999999999999998755444

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.2e-08  Score=81.68  Aligned_cols=44  Identities=34%  Similarity=1.070  Sum_probs=39.4

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|.+|++.+   .||.|+.|.+|||..|+.+++..+|.+.|+|+.|.
T Consensus        11 ~C~~C~~~g---~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~   54 (61)
T d1mm2a_          11 FCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT   54 (61)
T ss_dssp             SCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTT
T ss_pred             CCcCCCCCC---eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCc
Confidence            567777665   79999999999999999999988999999999986

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.8e-08  Score=80.20  Aligned_cols=47  Identities=32%  Similarity=0.853  Sum_probs=39.3

Q ss_pred             cccccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          142 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       142 ~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      .++++|.+|..++        +||.|+.|.++||..|+++....   ++...|+|+.|
T Consensus         7 ~~~~~C~~C~~~g--------~lv~Cd~C~~~~H~~C~~~~~~~---~~~~~W~C~~C   53 (61)
T d1mm2a_           7 HHMEFCRVCKDGG--------ELLCCDTCPSSYHIHCLNPPLPE---IPNGEWLCPRC   53 (61)
T ss_dssp             SSCSSCTTTCCCS--------SCBCCSSSCCCBCSSSSSSCCSS---CCSSCCCCTTT
T ss_pred             CCcCCCcCCCCCC--------eEEEeCCCCccCchhhcCCCcCc---CCCCcEECCCC
Confidence            4556999999765        89999999999999999986643   23578999999

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1e-07  Score=79.71  Aligned_cols=53  Identities=21%  Similarity=0.587  Sum_probs=41.6

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCcccccccc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRR  207 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C~VCgk  207 (864)
                      ..+|.+|..+|        +||.|+.|.++||+.|+.|+...   ++.+.|+|+.|..+.....
T Consensus         7 c~~C~~C~~~~--------~ll~Cd~C~~~~H~~C~~p~l~~---~p~~~W~C~~C~~~~~~~~   59 (70)
T d1fp0a1           7 ATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQD---VPGEEWSCSLCHVLPDLKE   59 (70)
T ss_dssp             SSCCSSSCSSS--------CCEECTTSSCEECTTSSSTTCCC---CCSSSCCCCSCCCCCSSCC
T ss_pred             CCCCCCCCCcC--------EEEECCCCChhhccccCCCCcCc---CCCCCEECcCCcCcCccCc
Confidence            34777887655        89999999999999999987643   3467899999976655543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.1e-08  Score=76.06  Aligned_cols=49  Identities=24%  Similarity=0.756  Sum_probs=39.5

Q ss_pred             cccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCccc
Q 002926          146 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC  202 (864)
Q Consensus       146 ~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk~C  202 (864)
                      .|.+|+..++     ...||.|+.|.++||+.|++++...   ++.+.|+|+.|+.|
T Consensus         2 ~C~vC~~~~~-----~~~~i~Cd~C~~~~H~~C~~p~~~~---~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGE-----DDKLILCDECNKAFHLFCLRPALYE---VPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSC-----CSCCEECTTTCCEECHHHHCTTCCS---CCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCC-----CCCEEEcCCCCCCCCCCCCCCCCCc---CCCCCEECcCCcCc
Confidence            5889987553     3489999999999999999997653   34689999999755

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.7e-07  Score=79.94  Aligned_cols=50  Identities=36%  Similarity=0.918  Sum_probs=39.2

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      || +|.+.|.++  ..||+||.|..|||..|+++..+.+.     ....|+|+.|+..
T Consensus        14 ~C-iC~~~~~~~--~~mI~Cd~C~~W~H~~C~g~~~~~~~-----~~~~~~C~~C~~~   63 (79)
T d1wepa_          14 YC-LCRQPYNVN--HFMIECGLCQDWFHGSCVGIEEENAV-----DIDIYHCPDCEAV   63 (79)
T ss_dssp             CS-TTSCSCCSS--SCEEEBTTTCCEEEHHHHTCCHHHHT-----TCSBBCCTTTTTT
T ss_pred             Ee-ECCCccCCC--CcEEECCCCCCcEeccccCcchhcCC-----CCCEEECccCcCC
Confidence            67 788877543  46999999999999999998765432     2347999999864

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=2.1e-07  Score=80.37  Aligned_cols=48  Identities=27%  Similarity=0.674  Sum_probs=38.0

Q ss_pred             cccccccCCC--CCceeecCCCCCcccccccCCCCc----CCCCCCccccCCCc
Q 002926          201 ICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHK----NVSSGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd--~~~LL~Cd~C~raYH~~CL~Ppl~----svP~g~W~CP~C~~  248 (864)
                      +|.+|+....  .+.||.|+.|..|||..|+.|++.    .++...|+|+.|..
T Consensus        18 ~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~   71 (88)
T d1weva_          18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR   71 (88)
T ss_dssp             SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred             CccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCc
Confidence            4667776443  346999999999999999999875    35778999999863

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=3.9e-07  Score=74.39  Aligned_cols=51  Identities=31%  Similarity=0.882  Sum_probs=39.2

Q ss_pred             ccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          284 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       284 yCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      .|.+|.+.+.++  ..||+|+.|..|||..|+++.......     ...|+|+.|+..
T Consensus         8 ~C~~C~~~~~~~--~~~I~Cd~C~~w~H~~C~~~~~~~~~~-----~~~w~C~~C~~~   58 (64)
T d1we9a_           8 QCGACGESYAAD--EFWICCDLCEMWFHGKCVKITPARAEH-----IKQYKCPSCSNK   58 (64)
T ss_dssp             CCSSSCCCCCSS--SCEEECSSSCCEEETTTTTCCTTGGGG-----CSSCCCHHHHTT
T ss_pred             cCcCcCCCCCCC--CCEEEcCCCCccCCcccCCcChHHCCC-----CCeEECcCCcCc
Confidence            688898876553  469999999999999999976543322     237999999864

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.5e-07  Score=77.67  Aligned_cols=54  Identities=33%  Similarity=0.871  Sum_probs=39.7

Q ss_pred             ccccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          282 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       282 gnyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      ..|| +|.+.+.   +..||+|+.|..|||..|+++....+..+.. ....|+|+.|+.
T Consensus        16 ~~~C-iC~~~~~---~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~-~~~~w~C~~C~~   69 (76)
T d1wema_          16 ALYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLER-NGEDYICPNCTI   69 (76)
T ss_dssp             CCCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH-HTCCCCCHHHHH
T ss_pred             cCEE-ECCCccC---CCeEEEECCCCCcCCccccCCCcccccccCC-CCCcEECCCCcC
Confidence            3467 7887753   3469999999999999999987655443322 234799999963

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=5.8e-07  Score=77.51  Aligned_cols=54  Identities=20%  Similarity=0.624  Sum_probs=39.5

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccc-cCCCCCcCCCCCc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD-LFHWSSWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~-~v~~~~W~CpeCk  200 (864)
                      ..+|.+|....   ......||.|+.|.++||..|++++..... ..+...|+|+.|.
T Consensus        16 ~~~C~iC~~~~---~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~   70 (88)
T d1weva_          16 GLACVVCRQMT---VASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             CCSCSSSCCCC---CCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             cCCccCCCCcc---CCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccC
Confidence            44799998643   223347999999999999999998754211 2345689999884

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=1.1e-06  Score=73.16  Aligned_cols=44  Identities=18%  Similarity=0.462  Sum_probs=36.5

Q ss_pred             ccccCCCCC-ceeecCCCCCcccccccCCCCcCCCCCCccccCCC
Q 002926          204 ICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       204 VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +|+...+.. .||+|+.|.+|||..|++++....+...|+|+.|.
T Consensus        20 ~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~   64 (72)
T d1weea_          20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI   64 (72)
T ss_dssp             TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHH
T ss_pred             eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCc
Confidence            566654443 59999999999999999987777778899999986

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=1.8e-06  Score=70.44  Aligned_cols=48  Identities=19%  Similarity=0.532  Sum_probs=38.0

Q ss_pred             cccccccCCCCC-ceeecCCCCCcccccccCCCCcCCC-CCCccccCCCc
Q 002926          201 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK  248 (864)
Q Consensus       201 ~C~VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~~  248 (864)
                      .|.+|++..+++ .||.|+.|+.|||..|++++...++ ...|+|+.|..
T Consensus         8 ~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~   57 (64)
T d1we9a_           8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             cCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcC
Confidence            566778766554 5899999999999999998766544 46899999863

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=97.76  E-value=2.8e-06  Score=66.93  Aligned_cols=43  Identities=19%  Similarity=0.586  Sum_probs=35.0

Q ss_pred             cccccccCCCCCceeecCC---CCCcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRR---CDAAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~---C~raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|+.+.++ .|+.|+.   |..|||..|++  +...|.+.|+||.|.
T Consensus         4 yC-~C~~~~~~-~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~   49 (51)
T d2pnxa1           4 YC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   49 (51)
T ss_dssp             ET-TTTEECCS-EEEECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-EcCCCCCC-CEEEEecCCCCCCCEeCCccC--CCcCCCCcEECcCCC
Confidence            56 78877654 5999986   57899999998  667788899999875

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=2.9e-06  Score=72.15  Aligned_cols=46  Identities=26%  Similarity=0.597  Sum_probs=36.2

Q ss_pred             cccccccCCCCC-ceeecCCCCCcccccccCCCCcCCC-CCCccccCCC
Q 002926          201 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~-~LL~Cd~C~raYH~~CL~Ppl~svP-~g~W~CP~C~  247 (864)
                      +| +|++..+++ .||.|+.|..|||..|++.....++ ...|+|+.|.
T Consensus        14 ~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~   61 (79)
T d1wepa_          14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCE   61 (79)
T ss_dssp             CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTT
T ss_pred             Ee-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCc
Confidence            46 898876544 5999999999999999997554444 3579999985

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=8.4e-06  Score=68.42  Aligned_cols=43  Identities=23%  Similarity=0.685  Sum_probs=32.1

Q ss_pred             cccccccCCCCCceeec--CCCC-CcccccccCCCCcCCCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFC--RRCD-AAYHCYCQHPPHKNVSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~C--d~C~-raYH~~CL~Ppl~svP~g~W~CP~C~  247 (864)
                      +| +|++..+. .|+.|  +.|. .|||+.|+.  +..+|.+.|+|+.|.
T Consensus        18 ~C-iC~~~~~~-~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~   63 (71)
T d1wesa_          18 YC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCR   63 (71)
T ss_dssp             CS-TTCCCCCS-SEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTS
T ss_pred             EE-EeCCCCCC-CEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCc
Confidence            45 67766443 45544  5675 699999996  778889999999985

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=1.2e-06  Score=73.34  Aligned_cols=53  Identities=26%  Similarity=0.637  Sum_probs=39.6

Q ss_pred             cCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCc-----CCCCCCccccCCC
Q 002926          194 WKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK-----NVSSGPYLCPKHT  247 (864)
Q Consensus       194 W~CpeCk~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Ppl~-----svP~g~W~CP~C~  247 (864)
                      +.-+.+.+| +|++..+.+.||+|+.|..|||..|++.+..     ..+...|+|+.|.
T Consensus        11 ~~d~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~   68 (76)
T d1wema_          11 VYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT   68 (76)
T ss_dssp             SCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHH
T ss_pred             ccCCCcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCc
Confidence            334445567 7888877778999999999999999984321     1235679999984

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=5.5e-05  Score=63.33  Aligned_cols=45  Identities=29%  Similarity=0.725  Sum_probs=31.7

Q ss_pred             cccccccccccccCcccCCceeec--CCCC-ccccccccccCccccccCCCCCcCCCCCc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSC--KSCG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~C--d~C~-raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ..+| +|....+      .+||.|  +.|. .+||+.|+++..     ++.+.|+|+.|+
T Consensus        16 ~~~C-iC~~~~~------~~~i~c~~~~C~~~wfH~~Cvgl~~-----~p~~~w~C~~C~   63 (71)
T d1wesa_          16 PTYC-LCNQVSY------GEMIGCDNEQCPIEWFHFSCVSLTY-----KPKGKWYCPKCR   63 (71)
T ss_dssp             CCCS-TTCCCCC------SSEECCSCTTCSCCCEETTTTTCSS-----CCSSCCCCTTTS
T ss_pred             CCEE-EeCCCCC------CCEEEEECCCCCCcCccCccCCCCc-----CCCCcEECcCCc
Confidence            3577 8986432      266666  4676 689999998743     346789999983

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=97.44  E-value=1.2e-05  Score=63.27  Aligned_cols=45  Identities=31%  Similarity=0.843  Sum_probs=34.0

Q ss_pred             cccccccccccCCCCCCceeccC---CCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDV---CQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~---C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      .|| +|.+.+    .+.||.|+.   |..|||..|+++..        .+...|+|+.|+.
T Consensus         3 ~yC-~C~~~~----~~~mi~Cd~~~C~~~WfH~~Cvgl~~--------~p~~~w~C~~C~~   50 (51)
T d2pnxa1           3 TYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTT--------KPRGKWFCPRCSQ   50 (51)
T ss_dssp             EET-TTTEEC----CSEEEECSCTTCSSCEEEGGGGTCSS--------CCSSCCCCHHHHC
T ss_pred             cEE-EcCCCC----CCCEEEEecCCCCCCCEeCCccCCCc--------CCCCcEECcCCCC
Confidence            478 788764    234999886   57899999999753        2456899999975

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.31  E-value=5.7e-05  Score=62.58  Aligned_cols=47  Identities=30%  Similarity=0.613  Sum_probs=34.5

Q ss_pred             ccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCC
Q 002926          145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC  199 (864)
Q Consensus       145 d~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeC  199 (864)
                      ..| +|....    +....||.|+.|.++||..|++++...   .....|+|+.|
T Consensus        17 ~~C-~C~~~~----~~~~~mv~Cd~C~~w~H~~C~g~~~~~---~~~~~~~C~~C   63 (72)
T d1weea_          17 VDC-KCGTKD----DDGERMLACDGCGVWHHTRCIGINNAD---ALPSKFLCFRC   63 (72)
T ss_dssp             ECC-TTCCCS----CCSSCEEECSSSCEEEETTTTTCCTTS---CCCSCCCCHHH
T ss_pred             EEe-eCCCCc----CCCCeEEEeCCCCCcCchhhcCCcccc---CCCCcEECcCC
Confidence            357 676533    223479999999999999999986543   23578999887

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.15  E-value=5.1e-05  Score=64.02  Aligned_cols=46  Identities=22%  Similarity=0.551  Sum_probs=33.4

Q ss_pred             cccccccCCCCCceeecC--CCCCcccccccCCCCcC---C--CCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKN---V--SSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd--~C~raYH~~CL~Ppl~s---v--P~g~W~CP~C~  247 (864)
                      +| +|+...+.+.|+.|+  .|..|||..|++.....   .  ....|+|+.|.
T Consensus        18 ~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~   70 (78)
T d1wewa_          18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR   70 (78)
T ss_dssp             CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred             Ee-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCc
Confidence            55 788776666788886  89999999999843221   1  12469999985

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.98  E-value=0.00016  Score=60.91  Aligned_cols=53  Identities=23%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             CcccccccccccccccCcccCCceeecC--CCCccccccccccCccccccC--CCCCcCCCCC
Q 002926          141 SNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLF--HWSSWKCPSC  199 (864)
Q Consensus       141 s~~dd~C~vC~~gG~~gs~~~eeLL~Cd--~C~raYH~~CL~p~~~~~~~v--~~~~W~CpeC  199 (864)
                      .....+| +|+....     ...||.|+  .|..+||..|+++...+....  ....|+|+.|
T Consensus        13 ~~~~~~C-~C~~~~~-----~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C   69 (78)
T d1wewa_          13 PEIKVRC-VCGNSLE-----TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC   69 (78)
T ss_dssp             CCCCCCC-SSCCCCC-----CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHH
T ss_pred             CCCccEe-ECCCccC-----CCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCC
Confidence            3344578 8986432     23788887  799999999999865432211  1246998887

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.008  Score=51.48  Aligned_cols=55  Identities=24%  Similarity=0.719  Sum_probs=38.9

Q ss_pred             CCCcccccccccccccccCcccCCceeecCCCCccccccccccCc--------ccccc-CCCCCcCCCCC
Q 002926          139 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA--------QNRDL-FHWSSWKCPSC  199 (864)
Q Consensus       139 ~~s~~dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~--------~~~~~-v~~~~W~CpeC  199 (864)
                      ....++.+|.+|..-.      .+.++-|..|.|.||-.||.--.        +.... -...+|.|..|
T Consensus        10 e~v~~D~mC~vC~v~t------~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C   73 (89)
T d1wila_          10 EPVVNDEMCDVCEVWT------AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCCCSCCCTTTCCCC------SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             cCCCcCccccccCccc------ccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhh
Confidence            3456888999997633      34889999999999999996431        11111 12468999988

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.87  E-value=0.21  Score=39.28  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=41.8

Q ss_pred             ccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 002926          804 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ  857 (864)
Q Consensus       804 ~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~gk~~vr~~~~  857 (864)
                      +|-.+-...+.||.|+.++|..|....-++.|.|.| |..+++.+.  .||-||.
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~--~lr~l~~   57 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQT   57 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHH--HcCcCCC
Confidence            677888888789999999999997544458999988 999998865  5666654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=90.84  E-value=0.021  Score=44.96  Aligned_cols=49  Identities=22%  Similarity=0.504  Sum_probs=31.8

Q ss_pred             cccccccccccccCcccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          144 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ..+|.||......   .......|.+|...||..||..|....     +.+.||.|+
T Consensus         6 ~~~C~IC~~~~~~---~~~~~c~c~~c~h~~H~~Cl~~W~~~~-----~~~~CP~Cr   54 (60)
T d1vyxa_           6 VPVCWICNEELGN---ERFRACGCTGELENVHRSCLSTWLTIS-----RNTACQICG   54 (60)
T ss_dssp             CCEETTTTEECSC---CCCCSCCCSSGGGSCCHHHHHHHHHHH-----TCSBCTTTC
T ss_pred             CCCCccCCccCCC---ceeEecccCCCCCEEcHHHHHHHHhhC-----CCCCCcccC
Confidence            4589999975321   111223567899999999999986532     345676663

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.21  E-value=0.13  Score=40.00  Aligned_cols=36  Identities=22%  Similarity=0.654  Sum_probs=27.2

Q ss_pred             ccccccccccccCcccCCceeecCCCCccccccccccCcc
Q 002926          145 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ  184 (864)
Q Consensus       145 d~C~vC~~gG~~gs~~~eeLL~Cd~C~raYH~~CL~p~~~  184 (864)
                      ..|.||...-.    ..+..+.+..|+..||..|+..|..
T Consensus         6 ~~C~ICl~~~~----~~~~~~~l~~C~H~Fh~~Ci~~Wl~   41 (55)
T d1iyma_           6 VECAVCLAELE----DGEEARFLPRCGHGFHAECVDMWLG   41 (55)
T ss_dssp             CCCTTTCCCCC----TTSCCEECSSSCCEECTTHHHHTTT
T ss_pred             CCCeEECcccc----CCCEEEEeCCCCCcccHHHHHHHHH
Confidence            36999986432    2235667778999999999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.37  E-value=0.1  Score=45.37  Aligned_cols=55  Identities=22%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             cccccccccccccC----------cccCCceeecCCCCccccccccccCccccccCCCCCcCCCCCc
Q 002926          144 NVMCRLCFVGENEG----------CERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR  200 (864)
Q Consensus       144 dd~C~vC~~gG~~g----------s~~~eeLL~Cd~C~raYH~~CL~p~~~~~~~v~~~~W~CpeCk  200 (864)
                      ++.|.||...-...          .......+.-..|+..||..||..|.....  ..+...||.|+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~--~~~~~~CP~CR   89 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPSCK   89 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTTTC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC--cCCCCcccccc
Confidence            45799998632100          011123344458999999999998876422  12445677774

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.43  Score=37.45  Aligned_cols=46  Identities=9%  Similarity=0.088  Sum_probs=37.5

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG  848 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-~~~~~~~~g  848 (864)
                      .+|-.+....+.||.|+.++|..|...+.++.|.|.| |..+++.+-
T Consensus         5 kvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~   51 (59)
T d1mhna_           5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS   51 (59)
T ss_dssp             CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred             CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHH
Confidence            4788888988889999999999997666668888755 788877754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.32  E-value=0.2  Score=38.83  Aligned_cols=47  Identities=30%  Similarity=0.605  Sum_probs=33.2

Q ss_pred             cccccccccccCCCCCCceeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCCC
Q 002926          283 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE  341 (864)
Q Consensus       283 nyCpVC~K~Y~D~dg~~MVqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~~  341 (864)
                      .-|+||...|.+++.  .+.+..|.+.||..|...    +..      ....||.||..
T Consensus         6 ~~C~ICl~~~~~~~~--~~~l~~C~H~Fh~~Ci~~----Wl~------~~~~CP~CR~~   52 (55)
T d1iyma_           6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDM----WLG------SHSTCPLCRLT   52 (55)
T ss_dssp             CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHH----TTT------TCCSCSSSCCC
T ss_pred             CCCeEECccccCCCE--EEEeCCCCCcccHHHHHH----HHH------hCCcCCCCCCE
Confidence            459999988876543  456677999999999552    111      14579999964

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.83  E-value=0.19  Score=42.90  Aligned_cols=46  Identities=17%  Similarity=0.474  Sum_probs=31.2

Q ss_pred             cccccccCCCCCceeecCCCCCcccccccCCC--C------cC----CCCCCccccCCC
Q 002926          201 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP--H------KN----VSSGPYLCPKHT  247 (864)
Q Consensus       201 ~C~VCgk~gd~~~LL~Cd~C~raYH~~CL~Pp--l------~s----vP~g~W~CP~C~  247 (864)
                      .|.+|.-.. .+.++.|..|.+.||..|+.--  +      ..    -....|.|..|-
T Consensus        17 mC~vC~v~t-~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~   74 (89)
T d1wila_          17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             cccccCccc-ccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhc
Confidence            666775432 3367899999999999999731  1      11    123579999874

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.63  Score=39.08  Aligned_cols=52  Identities=12%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             cccceEEEEecCCCceeeeeeEEeecCeeEEEEE-ecCCcccceecCceeeEeeecc
Q 002926          803 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSIT-LDDSRVKTLELGKQGVRFVPQK  858 (864)
Q Consensus       803 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~-~d~~~~~~~~~gk~~vr~~~~~  858 (864)
                      .+|--+-+.. +||.||.|+|..+.+.. ++.|. +|=|..+++.+.  .+|.||.+
T Consensus        27 ~~G~~c~a~~-~D~~wyRa~V~~~~~~~-~~~V~~vDyG~~~~v~~~--~l~~l~~~   79 (90)
T d2hqxa1          27 RRGEFCIAKF-VDGEWYRARVEKVESPA-KIHVFYIDYGNREVLPST--RLGTLSPA   79 (90)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEEETT-EEEEEETTTCCEEEECGG--GEECCCGG
T ss_pred             CCCCEEEEEE-cCCCEEEEEEEEeCCCC-eEEEEEEeCCCCEEEEHH--HeeECCHH
Confidence            6788888877 69999999999997543 37777 577988888764  47877754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.67  E-value=0.31  Score=42.16  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             eeccCCCCccccccCCCChHHHhhhccCCCCceeCCCCCC
Q 002926          301 VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG  340 (864)
Q Consensus       301 VqCD~C~~WfH~eCd~l~dE~y~~~gid~~~~Y~CptCr~  340 (864)
                      +.--.|.++||..|+.   . |.... ...+.+.||.||.
T Consensus        56 ~~~~~CgH~FH~~Ci~---~-Wl~~~-~~~~~~~CP~CR~   90 (114)
T d1v87a_          56 GRLTKCSHAFHLLCLL---A-MYCNG-NKDGSLQCPSCKT   90 (114)
T ss_dssp             EEESSSCCEECHHHHH---H-HHHHT-CCSSCCBCTTTCC
T ss_pred             eEECCCCChhhHHHHH---H-HHHhc-CcCCCCccccccc
Confidence            3445699999999955   2 22221 1234678999985

>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: C-terminal domain of transcriptional repressors
family: Biotin repressor (BirA)
domain: Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.22  E-value=0.83  Score=34.10  Aligned_cols=43  Identities=35%  Similarity=0.540  Sum_probs=35.3

Q ss_pred             EEecCCCceeeeeeEEee-cCeeEEEEEecCCcccceecCceeeEee
Q 002926          810 VHQQSDNSWHKGVVTDTV-EGTSTLSITLDDSRVKTLELGKQGVRFV  855 (864)
Q Consensus       810 v~~~sd~~w~~g~v~~~~-~~~~~~~v~~d~~~~~~~~~gk~~vr~~  855 (864)
                      |..-+|++. .|.-.||- -|.  |.|.||||++|.+-+|.-..||+
T Consensus         4 vkil~dg~~-egiaedide~gr--li~rl~~g~vkki~ygdvslrfl   47 (47)
T d2zgwa1           4 VKILGDGSF-EGIAEDIDDFGR--LIIRLDSGEVKKVIYGDVSLRFL   47 (47)
T ss_dssp             EEEESSSEE-EEEEEEECTTSC--EEEECTTSCEEEECSSSCEEEEC
T ss_pred             EEEecCCce-echhhhhhhhce--EEEEecCCcEEEEEEeeEEEEeC
Confidence            333478877 68777773 467  99999999999999999999996