Citrus Sinensis ID: 002933

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860----

MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRPIN

ccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccc

cccHHHHHHEHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccEEccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHEEHHHHHHHcccccHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccc

MSSWKNLLLKIgdncpeygnsddlkdHIETCFGVIRRElehssddvphyiincaeqiphkiplyGTLVGLLNLENEDFVKKVVETTQRKFQDaldsgncdRIRILMRFLTVMMCskilqpgsLVVVFETLLSSaattvdedkgnpswqaRADFYVTCILsclpwggaelIEQVPEEIERVMAGLEAYLSIRrhtsdtglsffeeddesgkglveKDFLEDLWHRVQALSsngwkldsvprphlsfeaqlvsgkshefgpiscpeqpdvptavsgithgkqkhdaelkypqrirrlnifpasksevdmqpidRFILEEYLLDVLLFFNGCRKECAFYMvnlpvpfryEYLMAETIFSQllllpqppfkpiyYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHlsnfqfiwpweewayvldlpkwapqrVFVQEVLEREVRLSYWDKVKQSIEnapaleellppkggpnfkysmedgrersEEHALSAELTNKVKGRQTAREIIVWVEEsvypihglGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVIskicpdhdkqLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVrwvfspenidqfhasdrpWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKlslvdgepvlggnpaRLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMErlpdasragtlqdlKSTHADAMavdleepsameldnengrpkksqsnggssgnvynigeKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAevlsedthpLFRRAVysglhrpin

MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQrkfqdaldsgncdRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAAttvdedkgnpsWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHgkqkhdaelkypqrIRRLNifpasksevdmQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIEnapaleellppkggPNFKYSMEDGRERSEEHALsaeltnkvkgrqtAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDqfhasdrpwEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAEsklslvdgepvlggNPARLSRLKLHAEkakneeisakesLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPsameldnengrpkksqsnggssgnvyNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRravysglhrpin

MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSqllllpqppFKPIYYTLVIMDLCKalpgafpavvagavraLFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTlaeeaaakakaeleaaesklslVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRPKKSQsnggssgnVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRPIN

****KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFE******KGLVEKDFLEDLWHRVQALSSNGWKLDSVP************************************************YPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQ************************************************TAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLA***********************************************************ALFARAVEENEALYLSLYRNFSNVLME*****************************************************VYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYS*******

**SWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPD************QKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDL****************************************************************AKESLEAKEALFARAVEENEALYLSLYRNFSNVLMER******************************************************NIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRP**

MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSG*********AELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSM************SAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAM*****************SSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRPIN

***WKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPD***AVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKA**E*EAAES***********GGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRA***QDLK***ADAMAVDLEEPSAMELDNE****************VYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRP**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVLGGNPARLSRLKLHxxxxxxxxxxxxxxxxxxxxxFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRPIN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		864	2.2.26 [Sep-21-2011]
Q9SIU2		848	Nuclear cap-binding prote	yes	no	0.980	0.998	0.695	0.0
Q10LJ0		867	Nuclear cap-binding prote	yes	no	0.993	0.989	0.635	0.0
Q6DIE2		791	Nuclear cap-binding prote	yes	no	0.774	0.845	0.269	8e-78
Q6GQD0		791	Nuclear cap-binding prote	N/A	no	0.774	0.845	0.271	9e-78
Q09161		790	Nuclear cap-binding prote	yes	no	0.697	0.763	0.290	2e-77
Q6GQ80		791	Nuclear cap-binding prote	N/A	no	0.765	0.835	0.270	1e-76
Q56A27		790	Nuclear cap-binding prote	yes	no	0.783	0.856	0.271	2e-76
Q3UYV9		790	Nuclear cap-binding prote	yes	no	0.783	0.856	0.271	3e-76
Q7PX35		807	Nuclear cap-binding prote	yes	no	0.708	0.758	0.271	2e-75
B4JM29		800	Nuclear cap-binding prote	N/A	no	0.799	0.863	0.256	5e-75

>sp\|Q9SIU2\|NCBP1_ARATH Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2	Back alignment and function desciption

 Score = 1270 bits (3287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/865 (69%), Positives = 724/865 (83%), Gaps = 18/865 (2%)

Query: 1   MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK 60
           MS+WK LLL+IG+  PEYG S D KDHIETCFGVIRRE+E S D V  +++ CAEQ+PHK
Sbjct: 1   MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHK 60

Query: 61  IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQP 120
           IPLYGTL+GLLNLENEDFV+K+VE+    FQ ALDSGNC+ IRIL+RF+T ++CSK++QP
Sbjct: 61  IPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP 120

Query: 121 GSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERV 180
            SL+VVFETLLSSAATTVDE+KGNPSWQ +ADFYV CILS LPWGG+EL EQVP+EIERV
Sbjct: 121 ASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERV 180

Query: 181 MAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR 240
           + G++AYLSIR+++S +GL+FF  + E    L EKDF+EDL  R+Q+L+SNGWKL+SVPR
Sbjct: 181 LVGIQAYLSIRKNSSTSGLNFFH-NGEFESSLAEKDFVEDLLDRIQSLASNGWKLESVPR 239

Query: 241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPA 300
           PHLSFEAQLV+GK HE  PI C EQP  P+  S    GKQKHDA  +YPQRIRRLNIFPA
Sbjct: 240 PHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDALTRYPQRIRRLNIFPA 299

Query: 301 SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLL 360
           +K E D+QPIDRF++EEYLLDVL + NGCRKECA YM NLPV FRYEYLMAET+FSQ+LL
Sbjct: 300 NKME-DVQPIDRFVVEEYLLDVLFYLNGCRKECASYMANLPVTFRYEYLMAETLFSQILL 358

Query: 361 LPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHL 420
           LPQPPFK +YYTLVIMDLCKALPGAFPAVVAGAVRALF+KI+DLDME R R ILWFSHHL
Sbjct: 359 LPQPPFKTLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKISDLDMESRTRLILWFSHHL 418

Query: 421 SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP 480
           SNFQFIWPWEEWA+VLDLPKWAP+RVFVQE+L+REVRLSYWDK+KQSIENA ALEELLPP
Sbjct: 419 SNFQFIWPWEEWAFVLDLPKWAPKRVFVQEILQREVRLSYWDKIKQSIENATALEELLPP 478

Query: 481 KGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV 540
           K GPNF YS+E+G+E++EE  LSAEL+ KVK +QTAR++IVW+EE++YP+HG  VT+ +V
Sbjct: 479 KAGPNFMYSLEEGKEKTEEQQLSAELSRKVKEKQTARDMIVWIEETIYPVHGFEVTLTIV 538

Query: 541 VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR 600
           VQTLLDIGSKSFTHL+TVLERYGQV SK+CPD+DKQ+ML+ +VS +WKNN Q  A++IDR
Sbjct: 539 VQTLLDIGSKSFTHLVTVLERYGQVFSKLCPDNDKQVMLLSQVSTYWKNNVQMTAVAIDR 598

Query: 601 MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGV 660
           MMGYRL+SN AIVRWVFSPEN+DQFH SD+PWE+L NA++KTYNRI DLRK+I ++ K V
Sbjct: 599 MMGYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDLRKDISNITKNV 658

Query: 661 TLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEA 720
            +AE+A+A A+ ELEAAESKLSLV+GEPVLG NPA++ RLK   EK    E+S +ESLEA
Sbjct: 659 LVAEKASANARVELEAAESKLSLVEGEPVLGENPAKMKRLKSTVEKTGEAELSLRESLEA 718

Query: 721 KEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSA 780
           KEAL  RA+ E E L L L+++F  VL ERLPD ++  ++QDLKS  A+      ++PSA
Sbjct: 719 KEALLNRALSETEVLLLLLFQSFLGVLKERLPDPTKVRSVQDLKSIGAED-----DKPSA 773

Query: 781 MELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDA 840
           M++D+ENG PKKS            +GE+EQWCLSTLGY+ AF+RQYASEIWPHMEKL++
Sbjct: 774 MDVDSENGNPKKS----------CEVGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLES 823

Query: 841 EVLS-EDTHPLFRRAVYSGLHRPIN 864
           EV S ED HPLF +A+ S L  P++
Sbjct: 824 EVFSGEDVHPLFLQAISSALQFPLH 848

Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state with the cap structure. Involved in flowering regulation, possibly by regulating pre-mRNA splicing of FLC gene. Acts as a negative regulator of abscisic acid signaling in guard cells.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q10LJ0\|NCBP1_ORYSJ Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1	Back alignment and function description

>sp\|Q6DIE2\|NCBP1_XENTR Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis GN=ncbp1 PE=2 SV=1	Back alignment and function description

>sp\|Q6GQD0\|NBP1B_XENLA Nuclear cap-binding protein subunit 1-B OS=Xenopus laevis GN=ncbp1-b PE=2 SV=1	Back alignment and function description

>sp\|Q09161\|NCBP1_HUMAN Nuclear cap-binding protein subunit 1 OS=Homo sapiens GN=NCBP1 PE=1 SV=1	Back alignment and function description

>sp\|Q6GQ80\|NBP1A_XENLA Nuclear cap-binding protein subunit 1-A OS=Xenopus laevis GN=ncbp1-a PE=2 SV=1	Back alignment and function description

>sp\|Q56A27\|NCBP1_RAT Nuclear cap-binding protein subunit 1 OS=Rattus norvegicus GN=Ncbp1 PE=1 SV=1	Back alignment and function description

>sp\|Q3UYV9\|NCBP1_MOUSE Nuclear cap-binding protein subunit 1 OS=Mus musculus GN=Ncbp1 PE=1 SV=2	Back alignment and function description

>sp\|Q7PX35\|NCBP1_ANOGA Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae GN=Cbp80 PE=3 SV=4	Back alignment and function description

>sp\|B4JM29\|NCBP1_DROGR Nuclear cap-binding protein subunit 1 OS=Drosophila grimshawi GN=Cbp80 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		864
359479295		865	PREDICTED: nuclear cap-binding protein s	0.998	0.997	0.802	0.0
225436579		855	PREDICTED: nuclear cap-binding protein s	0.987	0.997	0.796	0.0
356570247		863	PREDICTED: nuclear cap-binding protein s	0.995	0.996	0.758	0.0
356561261		853	PREDICTED: nuclear cap-binding protein s	0.983	0.996	0.761	0.0
449442561		864	PREDICTED: nuclear cap-binding protein s	0.995	0.995	0.762	0.0
255544958		824	cap binding protein, putative [Ricinus c	0.930	0.975	0.820	0.0
393195407		861	cap-binding protein 80 [Solanum tuberosu	0.994	0.997	0.738	0.0
224460065		861	nuclear cap-binding protein [Solanum tub	0.994	0.997	0.736	0.0
224460069		861	nuclear cap-binding protein [Solanum tub	0.994	0.997	0.736	0.0
87240697		887	Initiation factor eIF-4 gamma, middle [M	0.998	0.972	0.725	0.0

>gi\|359479295\|ref\|XP_003632252.1\| PREDICTED: nuclear cap-binding protein subunit 1-like isoform 2 [Vitis vinifera] gi\|296083820\|emb\|CBI24208.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1466 bits (3795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/864 (80%), Positives = 773/864 (89%), Gaps = 1/864 (0%)

Query: 1   MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK 60
           MSSW+ +LL+IGD CPEY  + D K+HIETC+GV+RRELEH  +D+  +++ CAEQ+PHK
Sbjct: 1   MSSWRTILLRIGDKCPEYNGNSDSKEHIETCYGVLRRELEHYGNDILPFLLQCAEQLPHK 60

Query: 61  IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQP 120
           IPLYGT+VGLLNLENE+FVKKVVE  Q   Q ALDSGNC+RIRILMRFLTVMMCSK++QP
Sbjct: 61  IPLYGTVVGLLNLENEEFVKKVVENCQNNLQGALDSGNCNRIRILMRFLTVMMCSKVIQP 120

Query: 121 GSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERV 180
           G LVVVFETLLSSAATTVDE+KGNPSWQA ADFY+TCILSCLPWGGAEL+EQVPEEIERV
Sbjct: 121 GPLVVVFETLLSSAATTVDEEKGNPSWQACADFYITCILSCLPWGGAELVEQVPEEIERV 180

Query: 181 MAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR 240
           M G+EAYLSIRRH SD GLSFFE+DDE+ K   EKDFLEDLW R+Q LSSNGWKLDSVPR
Sbjct: 181 MVGVEAYLSIRRHISDIGLSFFEDDDETEKNPDEKDFLEDLWGRIQVLSSNGWKLDSVPR 240

Query: 241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPA 300
           PHLSFEAQLV+GKSH+FGP+SCPE PD P+ +SGIT GKQKHDAELKYPQRIRRLNIFPA
Sbjct: 241 PHLSFEAQLVAGKSHDFGPLSCPELPDPPSTLSGITCGKQKHDAELKYPQRIRRLNIFPA 300

Query: 301 SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSQLLL 360
           +K E D+QPIDRFI EEYLLDVL FFNGCRKECA YMV LPVPFRYEYLMAETIFSQLLL
Sbjct: 301 NKIE-DLQPIDRFIAEEYLLDVLFFFNGCRKECASYMVGLPVPFRYEYLMAETIFSQLLL 359

Query: 361 LPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHL 420
           LPQPPFKP+YYTLVI+DLCKALPGAFPAVVAGAVRALF+KIADLDMECR R ILWFSHHL
Sbjct: 360 LPQPPFKPMYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRTRLILWFSHHL 419

Query: 421 SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP 480
           SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAP LEELLPP
Sbjct: 420 SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPTLEELLPP 479

Query: 481 KGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV 540
           KGGP+FKYS EDG+ER+E+HALS EL++ VKGRQ +RE+I W+EESV P+HG  V + VV
Sbjct: 480 KGGPSFKYSTEDGKERNEQHALSMELSSMVKGRQVSREVISWIEESVIPVHGSEVALSVV 539

Query: 541 VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR 600
           VQTLLDIGSKSFTHLITVLERYGQVI+K+C D DKQ++LI+EVS +WKN+ Q  AI+IDR
Sbjct: 540 VQTLLDIGSKSFTHLITVLERYGQVIAKLCHDQDKQVVLIDEVSSYWKNSAQMTAIAIDR 599

Query: 601 MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGV 660
           MMGYRLISN AIV+WVFS ENI+QFH SD PWE+LRNAVSKTYNRI DLRKEI SLKK +
Sbjct: 600 MMGYRLISNFAIVKWVFSSENIEQFHTSDHPWEILRNAVSKTYNRISDLRKEISSLKKSL 659

Query: 661 TLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEA 720
            LAE  A   KAELEAAESKL+LVDGEPVLG NP RL RLK +AEKAK EE+S ++SLEA
Sbjct: 660 ALAEGDAVTRKAELEAAESKLTLVDGEPVLGENPGRLKRLKSYAEKAKEEEVSVRDSLEA 719

Query: 721 KEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSA 780
           KEAL ARA++ENEAL+LSLY+NFSNVLMERLPD S+AGTL+ LK+  AD MAVDLEE S 
Sbjct: 720 KEALLARALDENEALFLSLYKNFSNVLMERLPDTSQAGTLRGLKTIQADEMAVDLEESST 779

Query: 781 MELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDA 840
           M++DNENGRP+KSQ+NGG + N YN+GEKEQWCLS LGYVKAFSRQYASEIW H+EKLDA
Sbjct: 780 MDVDNENGRPQKSQTNGGKANNGYNVGEKEQWCLSILGYVKAFSRQYASEIWLHIEKLDA 839

Query: 841 EVLSEDTHPLFRRAVYSGLHRPIN 864
           EVL+ED HPLFR+AVY+GL RPIN
Sbjct: 840 EVLTEDVHPLFRKAVYAGLRRPIN 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225436579\|ref\|XP_002274906.1\| PREDICTED: nuclear cap-binding protein subunit 1-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356570247\|ref\|XP_003553301.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356561261\|ref\|XP_003548901.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449442561\|ref\|XP_004139050.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255544958\|ref\|XP_002513540.1\| cap binding protein, putative [Ricinus communis] gi\|223547448\|gb\|EEF48943.1\| cap binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|393195407\|gb\|AFN07652.1\| cap-binding protein 80 [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|224460065\|gb\|ACN43583.1\| nuclear cap-binding protein [Solanum tuberosum] gi\|224460077\|gb\|ACN43589.1\| nuclear cap-binding protein [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|224460069\|gb\|ACN43585.1\| nuclear cap-binding protein [Solanum tuberosum] gi\|224460071\|gb\|ACN43586.1\| nuclear cap-binding protein [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|87240697\|gb\|ABD32555.1\| Initiation factor eIF-4 gamma, middle [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		864
TAIR\|locus:2054137		848	ABH1 "ABA HYPERSENSITIVE 1" [A	0.980	0.998	0.650	2.8e-311
UNIPROTKB\|F1ST49		729	NCBP1 "Uncharacterized protein	0.665	0.788	0.283	3.3e-63
DICTYBASE\|DDB_G0269814		772	ncbp1 "nuclear cap-binding pro	0.221	0.247	0.311	1.3e-59
UNIPROTKB\|Q6DIE2		791	ncbp1 "Nuclear cap-binding pro	0.562	0.614	0.285	5.9e-56
UNIPROTKB\|Q4R440		723	Q4R440 "Testis cDNA clone: Qts	0.576	0.688	0.274	1.2e-53
FB\|FBgn0022942		800	Cbp80 "cap binding protein 80"	0.592	0.64	0.255	1.7e-51
UNIPROTKB\|Q09161		790	NCBP1 "Nuclear cap-binding pro	0.576	0.630	0.274	5.3e-50
UNIPROTKB\|F1PUP7		790	NCBP1 "Uncharacterized protein	0.576	0.630	0.272	2.5e-49
UNIPROTKB\|Q5ZJZ6		793	NCBP1 "Nuclear cap-binding pro	0.571	0.622	0.283	5.4e-49
UNIPROTKB\|E1BMM0		790	NCBP1 "Uncharacterized protein	0.576	0.630	0.272	6.3e-49

TAIR\|locus:2054137 ABH1 "ABA HYPERSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2986 (1056.2 bits), Expect = 2.8e-311, P = 2.8e-311
 Identities = 563/865 (65%), Positives = 680/865 (78%)

Query:     1 MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHK 60
             MS+WK LLL+IG+  PEYG S D KDHIETCFGVIRRE+E S D V  +++ CAEQ+PHK
Sbjct:     1 MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHK 60

Query:    61 IPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQP 120
             IPLYGTL+GLLNLENEDFV+K+VE+    FQ ALDSGNC+ IRIL+RF+T ++CSK++QP
Sbjct:    61 IPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP 120

Query:   121 GSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERV 180
              SL+VVFETLLSSAATTVDE+KGNPSWQ +ADFYV CILS LPWGG+EL EQVP+EIERV
Sbjct:   121 ASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERV 180

Query:   181 MAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR 240
             + G++AYLSIR+++S +GL+FF  + E    L EKDF+EDL  R+Q+L+SNGWKL+SVPR
Sbjct:   181 LVGIQAYLSIRKNSSTSGLNFFH-NGEFESSLAEKDFVEDLLDRIQSLASNGWKLESVPR 239

Query:   241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPA 300
             PHLSFEAQLV+GK HE  PI C EQP  P+  S    GKQKHDA  +YPQRIRRLNIFPA
Sbjct:   240 PHLSFEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDALTRYPQRIRRLNIFPA 299

Query:   301 SKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRYEYLMAETIFSXXXX 360
             +K E D+QPIDRF++EEYLLDVL + NGCRKECA YM NLPV FRYEYLMAET+FS    
Sbjct:   300 NKME-DVQPIDRFVVEEYLLDVLFYLNGCRKECASYMANLPVTFRYEYLMAETLFSQILL 358

Query:   361 XXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIRFILWFSHHL 420
                  FK +YYTLVIMDLCK                LF+KI+DLDME R R ILWFSHHL
Sbjct:   359 LPQPPFKTLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKISDLDMESRTRLILWFSHHL 418

Query:   421 SNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP 480
             SNFQFIWPWEEWA+VLDLPKWAP+RVFVQE+L+REVRLSYWDK+KQSIENA ALEELLPP
Sbjct:   419 SNFQFIWPWEEWAFVLDLPKWAPKRVFVQEILQREVRLSYWDKIKQSIENATALEELLPP 478

Query:   481 KGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLGVTIKVV 540
             K GPNF YS+E+G+E++EE  LSAEL+ KVK +QTAR++IVW+EE++YP+HG  VT+ +V
Sbjct:   479 KAGPNFMYSLEEGKEKTEEQQLSAELSRKVKEKQTARDMIVWIEETIYPVHGFEVTLTIV 538

Query:   541 VQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDR 600
             VQTLLDIGSKSFTHL+TVLERYGQV SK+CPD+DKQ+ML+ +VS +WKNN Q  A++IDR
Sbjct:   539 VQTLLDIGSKSFTHLVTVLERYGQVFSKLCPDNDKQVMLLSQVSTYWKNNVQMTAVAIDR 598

Query:   601 MMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGV 660
             MMGYRL+SN AIVRWVFSPEN+DQFH SD+PWE+L NA++KTYNRI DLRK+I ++ K V
Sbjct:   599 MMGYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDLRKDISNITKNV 658

Query:   661 TXXXXXXXXXXXXXXXXXXXXXXVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEA 720
                                    V+GEPVLG NPA++ RLK   EK    E+S +ESLEA
Sbjct:   659 LVAEKASANARVELEAAESKLSLVEGEPVLGENPAKMKRLKSTVEKTGEAELSLRESLEA 718

Query:   721 KEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSA 780
             KEAL  RA+ E E L L L+++F  VL ERLPD ++  ++QDLKS  A+    D ++PSA
Sbjct:   719 KEALLNRALSETEVLLLLLFQSFLGVLKERLPDPTKVRSVQDLKSIGAE----D-DKPSA 773

Query:   781 MELDNENGRPKKSQXXXXXXXXVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDA 840
             M++D+ENG PKKS            +GE+EQWCLSTLGY+ AF+RQYASEIWPHMEKL++
Sbjct:   774 MDVDSENGNPKKS----------CEVGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLES 823

Query:   841 EVLS-EDTHPLFRRAVYSGLHRPIN 864
             EV S ED HPLF +A+ S L  P++
Sbjct:   824 EVFSGEDVHPLFLQAISSALQFPLH 848

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006412 "translation" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=NAS

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0000339 "RNA cap binding" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0048574 "long-day photoperiodism, flowering" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA;IMP

GO:0031053 "primary miRNA processing" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB\|F1ST49 NCBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0269814 ncbp1 "nuclear cap-binding protein subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6DIE2 ncbp1 "Nuclear cap-binding protein subunit 1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R440 Q4R440 "Testis cDNA clone: QtsA-12580, similar to human nuclear cap binding protein subunit 1, 80kDa (NCBP1)," [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

FB\|FBgn0022942 Cbp80 "cap binding protein 80" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q09161 NCBP1 "Nuclear cap-binding protein subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUP7 NCBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZJZ6 NCBP1 "Nuclear cap-binding protein subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BMM0 NCBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIU2	NCBP1_ARATH	No assigned EC number	0.6959	0.9803	0.9988	yes	no
Q10LJ0	NCBP1_ORYSJ	No assigned EC number	0.6358	0.9930	0.9896	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		864
pfam09088		189	pfam09088, MIF4G_like, MIF4G like	2e-47
pfam09090		250	pfam09090, MIF4G_like_2, MIF4G like	7e-41
pfam02854		198	pfam02854, MIF4G, MIF4G domain	1e-22
smart00543		200	smart00543, MIF4G, Middle domain of eukaryotic ini	2e-19

>gnl\|CDD\|149958 pfam09088, MIF4G_like, MIF4G like	Back alignment and domain information

 Score =  166 bits (423), Expect = 2e-47
 Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 27/184 (14%)

Query: 310 IDRFILEEYLLDV--LLFFNGCRKECAFYMVNLPVPFRY--------------------- 346
           I  F+  + L D+  LL FN  RKECA  +++L   F                       
Sbjct: 6   IAAFLFRDILADIINLLEFN--RKECARELLDLDCFFTRKTFAPRGTSVDKLLDPPESTW 63

Query: 347 --EYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADL 404
             E ++ ETI  +L  LP PP+KPIYY  ++++LCK  P A   V+  A+R L+ ++  L
Sbjct: 64  KLEDVIVETILGELFQLPTPPYKPIYYHSLLIELCKLAPAAIAPVLGRAIRFLYRRLDSL 123

Query: 405 DMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKV 464
           D+E   RF+ WFSHHLSNF F W W EW   L+LP   P++VF++EV+E+E+RLSY+D++
Sbjct: 124 DLELIDRFVDWFSHHLSNFGFRWKWTEWVPDLELPDLHPRKVFIREVIEKEIRLSYYDRI 183

Query: 465 KQSI 468
           K+++
Sbjct: 184 KETL 187

Members of this family are involved in mediating U snRNA export from the nucleus. They adopt a highly helical structure, wherein the polypeptide chain forms a right-handed solenoid. At the tertiary level, the domain is composed of a superhelical arrangement of successive antiparallel pairs of helices. Length = 189

>gnl\|CDD\|220107 pfam09090, MIF4G_like_2, MIF4G like	Back alignment and domain information

>gnl\|CDD\|217253 pfam02854, MIF4G, MIF4G domain	Back alignment and domain information

>gnl\|CDD\|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		864
KOG1104		759	consensus Nuclear cap-binding complex, subunit NCB	100.0
PF09088		191	MIF4G_like: MIF4G like; InterPro: IPR015172 This e	100.0
PF09090		253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	100.0
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	99.58
KOG2140		739	consensus Uncharacterized conserved protein [Gener	99.44
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	99.37
KOG2141		822	consensus Protein involved in high osmolarity sign	94.42
KOG2051		1128	consensus Nonsense-mediated mRNA decay 2 protein [	93.93

>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=3.5e-169  Score=1434.65  Aligned_cols=715  Identities=35%  Similarity=0.628  Sum_probs=656.8

Q ss_pred             cchhhHhhhccCCCCCCCCCchHhhHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCCchHHHHHHHHHhcCChhHHHHH
Q 002933            3 SWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKV   82 (864)
Q Consensus         3 ~~~~li~riGek~~~~~~~ss~e~~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~~~g~~i   82 (864)
                      +.+++|.++||++     .+++|+||++|+++|.+|++++++.|++++.+||.++|+|+|+|||||||+|+||++||+++
T Consensus        30 rl~~~i~~vg~~s-----~ss~e~~l~~l~~~l~~~~~~~~~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn~~fg~~~  104 (759)
T KOG1104|consen   30 RLESLIREVGEPS-----GSSVEDNLENLVAVLEADLENFKSKILDILNTCAVYLPEKITAYATLVGLLNLKNFNFGGEF  104 (759)
T ss_pred             HHHHHHHhhcCCC-----CCcHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhccchhhHHHH
Confidence            5678899999996     99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHhhh
Q 002933           83 VETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL  162 (864)
Q Consensus        83 ve~~~~~lq~~L~~g~w~~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~~L  162 (864)
                      |+++++++|+++++|+|++||.++|||++|+||+|+++++++++|++|++.|.     +...|  |+|+|||+||||++|
T Consensus       105 v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~~-----e~~~P--qvr~D~~v~~vLs~l  177 (759)
T KOG1104|consen  105 VEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAAI-----EENVP--QVRRDYYVYCVLSSL  177 (759)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHH-----hhcCc--chhhhHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999874     33344  999999999999999


Q ss_pred             hhccHHhhhhCHHHHHHHHHHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHHHHHHHHhCCCcccCCCCCc
Q 002933          163 PWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPH  242 (864)
Q Consensus       163 P~~G~eL~e~~~e~Le~ll~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ql~~L~~~~W~~~~ipRpy  242 (864)
                      ||+|++|+++.++++|+|+.+|+.|+++|+++|.++|++|+.    +.+++++|||++||+||++|++|+|++++|||||
T Consensus       178 Pw~g~el~e~~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~----~~~~~qeeyle~L~~qI~~lr~n~w~e~hIprPy  253 (759)
T KOG1104|consen  178 PWFGRELNEKKPTEMEELLVYIEIYLKKRKKSHINLLNVWSG----EPDHPQEEYLELLWAQIQKLRQNDWAENHIPRPY  253 (759)
T ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHhcccccchhhcCCC----CCCchHHHHHHHHHHHHHHHHhcCcccccCCCch
Confidence            999999999999999999999999999999999999999985    3678999999999999999999999999999999


Q ss_pred             chhhhhhccCCCcCCCCCCCCCCCCCCCCCCCcccCCccccccccCCccccccccccCCCC-C-----CCCCchhHHHHH
Q 002933          243 LSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKS-E-----VDMQPIDRFILE  316 (864)
Q Consensus       243 ~~f~~~L~~~~~H~lp~i~~P~~~~~~~~~~~~~~~~~~~~~~~~yP~~~~~frlf~~~~~-~-----~~~~~ier~lie  316 (864)
                      ++|+++|+++.+|+||+++.|                 +|+....||.|.++||+|.++++ +     .+.++|+||++|
T Consensus       254 ~~Fes~L~~~~~h~Lp~~~~p-----------------ph~~~~~yp~p~v~fR~f~~~~~~~e~p~mp~~ssi~rflfe  316 (759)
T KOG1104|consen  254 LGFESTLVHALQHNLPSFVSP-----------------PHTEDSEYPMPRVVFRMFQYTDCGFEIPTMPGASSIERFLFE  316 (759)
T ss_pred             hhHHHHHHHhcccCCCCCCCC-----------------CCcccccCCcchhhhhcccccccCCCCCCCCCchhHHHHHHH
Confidence            999999999999999999977                 47778889999999999999988 2     267899999999


Q ss_pred             HHHHHHHHhccccHHHHHHHhhcCCCCCC---chhhHHHHHHHHhhcCCCCCCcchhHHHHHHHHHhcCCCCchHHHHHH
Q 002933          317 EYLLDVLLFFNGCRKECAFYMVNLPVPFR---YEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGA  393 (864)
Q Consensus       317 e~i~Dii~~f~~nRKecA~~Ll~lp~t~k---~E~~iVEtIfs~lf~LP~p~~~~vYY~slLiELCK~~P~~iapvlgrA  393 (864)
                      ++|+|||.++++|||+||++|+++|.++|   +||+|||||||+||+||+|+++.+||||||+||||++|+++|||||||
T Consensus       317 ~~i~dii~sl~fnRKecA~~l~~l~~~f~~~p~eylivEtIfgell~LP~~~~~~iyy~slLiElCK~~P~~lpqV~aqa  396 (759)
T KOG1104|consen  317 EIILDIIESLEFNRKECARQLLSLPVKFKAIPIEYLIVETIFGELLRLPTPPYKTIYYTSLLIELCKLQPKALPQVLAQA  396 (759)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHcCcccccCccHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhCccchhHHHHHH
Confidence            99999999999999999999999997655   999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhhhcccCccccccccccccCCCCCCchHHHHHHHHHHHHhhchhHHHHHhcCCcch
Q 002933          394 VRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPA  473 (864)
Q Consensus       394 ir~ly~~l~~mD~e~~~Rf~dWFS~HLSNF~F~W~W~eW~~~l~l~~~hPk~~Fir~vLeKeiRLSY~~RIk~slP~~~~  473 (864)
                      +|+||+++++||++|++||+||||||||||+|+|+|+||.+|+++|.+|||++|+|++|+||+|||||+||++++|  ..
T Consensus       397 ~r~lY~rldsm~~~c~dR~idWFShHLSNF~F~w~W~eW~~~l~~d~~~pk~~FvreviqkelrLsy~~rI~dslP--~~  474 (759)
T KOG1104|consen  397 VRILYMRLDSMDTECFDRFIDWFSHHLSNFQFRWKWNEWADCLGLDFEHPKPNFVREVIQKELRLSYYQRIKDSLP--TL  474 (759)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhccCcceechhhhhhhcCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhh--HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999  48


Q ss_pred             hhccCCCCCCCCccccCCCCccCchhHHHHHHHHHHhcCCCCHHHHHHHHHhh--ccCCCCchhHHHHHHHHHHHhccch
Q 002933          474 LEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEES--VYPIHGLGVTIKVVVQTLLDIGSKS  551 (864)
Q Consensus       474 ~~~llP~~p~P~~~y~~e~~~~~~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~--~~~~~g~~~~i~vfvq~ll~~GsKS  551 (864)
                      +..++|++|+|+|+|.+|.++. .++..+|.++..++|.|++++++..+|+..  ....+++.++|.+||||+|++||||
T Consensus       475 ~~~l~P~~~~pny~y~~Ee~~~-~~~~~~~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lGSKS  553 (759)
T KOG1104|consen  475 LAKLLPPPPLPNYKYTDEEDPV-LPQSLVAVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLGSKS  553 (759)
T ss_pred             HHHhCCCCCCCceeeecccCcc-ccchHHHHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhccch
Confidence            9999999999999999997653 455568999999999999999999999921  2234567899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHhhCCCcchhHHHHhhhccccChhhHHHhhcCccccccccccCc
Q 002933          552 FTHLITVLERYGQVISKICPDHDK-QLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDR  630 (864)
Q Consensus       552 fSH~~~~iery~~~lk~l~~~~~~-q~~il~~v~~~W~~~pQ~~~ivvDkll~~~Iv~p~~Vv~W~F~~~~~~~~~~~~~  630 (864)
                      |||++++++||+++||+++.+++. |.++|++|++||++||||+++++|||++|+||+|.+||+|+|+++|.++|+. .|
T Consensus       554 fSH~f~~lek~~~vfk~l~~~~e~~q~~vl~~vft~Wk~n~Qm~~v~~Dkml~~~ii~~~aVv~WiF~~~m~~~~~r-~~  632 (759)
T KOG1104|consen  554 FSHAFSALEKYHTVFKKLCEDSETKQIIVLEAVFTFWKANPQMGFVLTDKMLKYQIIDCSAVVRWIFSEEMVNEFTR-LY  632 (759)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCchhhHHHHHHHhccccccHHHHHHHhcCHHhhhhHHH-HH
Confidence            999999999999999999987655 9999999999999999999999999999999999999999999999988875 99


Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhhhhHhHHhHhhhhhh
Q 002933          631 PWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNE  710 (864)
Q Consensus       631 ~WEil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (864)
                      +||+||+|++|+++|+++++++++++.+++..++.+......+                   +.+  +|     ++.   
T Consensus       633 ~wEil~~al~K~~~~~~~~~k~ie~~~e~~~~~~~~~~d~~~~-------------------~~~--~~-----~~~---  683 (759)
T KOG1104|consen  633 LWEILHSALNKLNKHLNRSQKNIEEVTEKLETAEKSEIDLEDD-------------------LSA--ER-----DEI---  683 (759)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccchhhh-------------------hhh--hh-----hhh---
Confidence            9999999999999999999999999999876542221111111                   000  00     122   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCcccccccccchhhhcccCCcccccccccCCCC
Q 002933          711 EISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRP  790 (864)
Q Consensus       711 ~~~~~~~~e~~~~~l~~a~~eqk~lfl~~~~~Fi~~L~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (864)
                         .++.+|...+++|.|+-++|..|..+||+|+                                              
T Consensus       684 ---~~e~~e~~~~~~E~~~~~~k~~~~~v~~k~~----------------------------------------------  714 (759)
T KOG1104|consen  684 ---KEENVEGDPEDLEDANLKEKWLFFVVFQKFI----------------------------------------------  714 (759)
T ss_pred             ---hHHHhccChhhhhhhhHHHHHHHHHHhhhhH----------------------------------------------
Confidence               5566778888888899999999999999986                                              


Q ss_pred             CCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCChhhHHH--HHhccC
Q 002933          791 KKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRA--VYSGLH  860 (864)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~W~~~~~g~~~~~~~~~~~~i~~~~~~l~~~~ft~~~~~~~~~~--~~~~~~  860 (864)
                                                  ++++.|..|++...+|+.++++++||+|+||+|.+.  +|++++
T Consensus       715 ----------------------------~le~~f~~~~e~~~k~~~~i~~~~~te~l~psi~~~~~~f~~~~  758 (759)
T KOG1104|consen  715 ----------------------------ILEAYFLEHEELAQKYSSTIENLVFTEDLDPSISNVFQQFVALR  758 (759)
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhhhc
Confidence                                        234556779999999999999999999999999998  676665

>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain	Back alignment and domain information

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]	Back alignment and domain information

>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		864
1n52_A		790	Cap Binding Complex Length = 790		9e-69
1h2v_C		771	Structure Of The Human Nuclear Cap-Binding-Complex		2e-68
1h6k_A		757	Nuclear Cap Binding Complex Length = 757		2e-68
1h2t_C		723	Structure Of The Human Nuclear Cap-Binding-Complex		4e-67

>pdb|1N52|A Chain A, Cap Binding Complex Length = 790

Back alignment and structure

Iteration: 1

Score = 258 bits (659), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 183/671 (27%), Positives = 319/671 (47%), Gaps = 65/671 (9%) Query: 5 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64 ++L+ K+G+ ++ L+ ++E GV+ +L + + + A +P K+ +Y Sbjct: 32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 86 Query: 65 GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124 TLVGLLN N +F + VE R+ +++L + N + L+RFL+ ++ ++ S+V Sbjct: 87 TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 146 Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184 +FE +S T +ED Q R D+YV LS LPW G EL E+ E++R+ A Sbjct: 147 AMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 199 Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244 E+YL R+ T L + D K ++++L+ LW ++Q L + W+ + RP+L+ Sbjct: 200 ESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLA 255 Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRL--------- 295 F++ L H P + P + D+ P+ I R+ Sbjct: 256 FDSILCEALQHNLPPFTPPPHTE---------------DSVYPMPRVIFRMFDYTDDPEG 300 Query: 296 NIFPASKSEVDMQPIDRFILEEYLLDVLLFFNGCRKECAFYMVNLP----VPFRYEYLMA 351 + P S S ++RF++EE L ++ RK CA +V+ P +P Y + Sbjct: 301 PVMPGSHS------VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH--IV 352 Query: 352 ETIFSXXXXXXXXXFKPIYYTLVIMDLCKXXXXXXXXXXXXXXXXLFDKIADLDMECRIR 411 E IF+ + YT ++++LCK L+ ++ ++ C R Sbjct: 353 EVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 412 Query: 412 FILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENA 471 FI WFSHHLSNFQF W WE+W+ L +P+ FV+EVLE+ +RLSY ++ + Sbjct: 413 FINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--P 470 Query: 472 PALEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYP-- 529 P L P +KY E H+++ L K + T EI +++ P Sbjct: 471 PTFSALCPANPTCIYKYGDESSNSLP-GHSVALCLAVAFKSKATNDEIFSILKDVPNPNQ 529 Query: 530 ----IHGLG---VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEE 582 G + I+V VQTLL + +KSF+H + L ++ +V + + +L ++ Sbjct: 530 DDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRV 589 Query: 583 VSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKT 642 + W+N+ Q A+ +D+M+ +++ A+ W+FS E F WE+L + + K Sbjct: 590 MFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVWEILHSTIRKM 648 Query: 643 YNRICDLRKEI 653 + ++KE+ Sbjct: 649 NKHVLKIQKEL 659

PyMOL of 1n52

>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) Length = 771

Back alignment and structure

>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex Length = 757

Back alignment and structure

>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) In Complex With A Cap Analogue M7gpppg Length = 723

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		864
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Length = 771	Back alignment and structure

 Score =  572 bits (1475), Expect = 0.0
 Identities = 211/859 (24%), Positives = 372/859 (43%), Gaps = 128/859 (14%)

Query: 5   KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLY 64
           ++L+ K+G+          L+ ++E   GV+  +L +    +   +   A  +P K+ +Y
Sbjct: 13  ESLICKVGEKSA-----CSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIY 67

Query: 65  GTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLV 124
            TLVGLLN  N +F  + VE   R+ +++L + N +    L+RFL+ ++   ++   S+V
Sbjct: 68  TTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 127

Query: 125 VVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGL 184
            +FE  +S       +++  P  Q R D+YV   LS LPW G EL E+   E++R+ A  
Sbjct: 128 AMFENFVSVT-----QEEDVP--QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180

Query: 185 EAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPRPHLS 244
           E+YL  R+ T    L  +  D        ++++L+ LW ++Q L  + W+   + RP+L+
Sbjct: 181 ESYLKRRQKTHVPMLQVWTADKPHP----QEEYLDCLWAQIQKLKKDRWQERHILRPYLA 236

Query: 245 FEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSE 304
           F++ L     H   P + P                   D+    P+ I R+  +      
Sbjct: 237 FDSILCEALQHNLPPFTPPPH---------------TEDSVYPMPRVIFRMFDYTDDPEG 281

Query: 305 VDMQP---IDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRY--EYLMAETIFSQLL 359
             M     ++RF++EE L  ++      RK CA  +V+ P   +    Y + E IF++L 
Sbjct: 282 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF 341

Query: 360 LLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHH 419
            LP PP   + YT ++++LCK  PG+ P V+A A   L+ ++  ++  C  RFI WFSHH
Sbjct: 342 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH 401

Query: 420 LSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLP 479
           LSNFQF W WE+W+  L     +P+  FV+EVLE+ +RLSY  ++   +   P    L P
Sbjct: 402 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVP--PTFSALCP 459

Query: 480 PKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGLG----- 534
                 +KY  E        H+++  L    K + T  EI   +++   P          
Sbjct: 460 SNPTCIYKYGDESSNS-LPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGF 518

Query: 535 ----VTIKVVVQTLLDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNN 590
               + I+V VQTLL + +KSF+H  + L ++ +V   +    + +L ++  +   W+N+
Sbjct: 519 SFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNH 578

Query: 591 TQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPWEVLRNAVSKTYNRICDLR 650
            Q  A+ +D+M+  +++   A+  W+FS E    F      WE+L + + K    +  ++
Sbjct: 579 PQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFT-RLFVWEILHSTIRKMNKHVLKIQ 637

Query: 651 KEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNE 710
           KE+   K      E+ A + K   +  +      DG                        
Sbjct: 638 KELEEAK------EKLARQHKRRSDDDDRSSDRKDG------------------------ 667

Query: 711 EISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADA 770
               +E +E  +     A  E + L+L +++ F  +L E L      GT           
Sbjct: 668 --VLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT----------- 714

Query: 771 MAVDLEEPSAMELDNENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASE 830
                                                    W  + +  ++    Q+   
Sbjct: 715 ------------------------------------SVLTPWYKNCIERLQQIFLQHHQI 738

Query: 831 IWPHMEKLDAEVLSEDTHP 849
           I  +M  L+  + + +  P
Sbjct: 739 IQQYMVTLENLLFTAELDP 757

PyMOL of 1h2v

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		864
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	100.0
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	98.34
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	98.12
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	97.46
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	97.42
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	97.22
2i2o_A		224	EIF4G-like protein; protein structure initiative,	97.18
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	96.11
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	95.71
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	94.31
1uw4_B		248	UPF2, regulator of nonsense transcripts 2; nonsens	94.2
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	85.17
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	81.66

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*	Back alignment and structure

Probab=100.00  E-value=2e-172  Score=1542.67  Aligned_cols=745  Identities=28%  Similarity=0.517  Sum_probs=675.7

Q ss_pred             CCcchhhHhhhccCCCCCCCCCchHhhHHHHHHHHHhhhccccCcHHHHHHHHHHhCCCCchHHHHHHHHHhcCChhHHH
Q 002933            1 MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVK   80 (864)
Q Consensus         1 ~~~~~~li~riGek~~~~~~~ss~e~~ie~La~~l~~el~~~~~~il~~l~~cv~e~P~K~p~YAtLVgllN~kn~~~g~   80 (864)
                      +++|+++|+|+|||+     ++++++||++|+++|.++++++++.|++++++|+.++|+|+|+||||||++|+++|+||+
T Consensus         9 ~~~l~~lI~rlge~~-----~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~   83 (771)
T 1h2v_C            9 EDHLESLICKVGEKS-----ACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGG   83 (771)
T ss_dssp             -CHHHHHHHTTTSSC-----SSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHH
Confidence            468999999999996     899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHHHhhcccccccCcccHHHHHHHHHHhhhhcccccCCCChhhhhhhHHHHHHHh
Q 002933           81 KVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILS  160 (864)
Q Consensus        81 ~ive~~~~~lq~~L~~g~w~~~klllRFLa~Lvn~~Vi~~~sl~~ll~~Ll~~a~~~~~~e~~~~~~q~r~D~~v~~vL~  160 (864)
                      ++|++++.+|++++++|+|++||+++||||||+||+|+++++++++|+.|++.+.     +.+.+  |+|+|||+||+|+
T Consensus        84 ~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~-----e~~~~--q~r~D~~v~~vL~  156 (771)
T 1h2v_C           84 EFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQ-----EEDVP--QVRRDWYVYAFLS  156 (771)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGG-----CSSCC--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhh-----hcCCc--ccchhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999762     44555  9999999999999


Q ss_pred             hhhhccHHhhhhCHHHHHHHHHHHHHHHhhcccCCCCCcccccCCCCCCCCcchHhHHHHHHHHHHHHHhCCCcccCCCC
Q 002933          161 CLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGKGLVEKDFLEDLWHRVQALSSNGWKLDSVPR  240 (864)
Q Consensus       161 ~LP~~G~eL~e~~~e~Le~ll~~ie~y~~~R~~~~~~ll~~~~~~~~~~~~~~~~~~L~~Lw~ql~~L~~~~W~~~~ipR  240 (864)
                      +|||+|++|++++++++++||++++.|+++|++.++.++++|.++    .+++++++|++||+||+++++|||+++++||
T Consensus       157 ~Lp~~G~~L~e~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~----~~~~~~~~l~~L~~ql~~lr~~~w~~~~ipr  232 (771)
T 1h2v_C          157 SLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTAD----KPHPQEEYLDCLWAQIQKLKKDRWQERHILR  232 (771)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCC----SSCCCCBHHHHHHHHHHHHHHTTTCCSCCCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCccchhhhhccccC----CCCchhhHHHHHHHHHHHHHHCCCCCcCCCc
Confidence            999999999999999999999999999999999888899999763    4578899999999999999999999999999


Q ss_pred             CcchhhhhhccCCCcCCCCCCCCCCCCCCCCCCCcccCCccccccccCCccccccccccCCCCC-----CCCCchhHHHH
Q 002933          241 PHLSFEAQLVSGKSHEFGPISCPEQPDVPTAVSGITHGKQKHDAELKYPQRIRRLNIFPASKSE-----VDMQPIDRFIL  315 (864)
Q Consensus       241 py~~f~~~L~~~~~H~lp~i~~P~~~~~~~~~~~~~~~~~~~~~~~~yP~~~~~frlf~~~~~~-----~~~~~ier~li  315 (864)
                      ||+.|++.|.++.+|+||++++|.                 |..+..||.|.++||+|++++++     .+.++|||+++
T Consensus       233 p~~~f~~~l~d~~~H~lp~~~~p~-----------------~~~~~~yp~p~~~f~if~~~d~~e~~~~p~~~~idr~l~  295 (771)
T 1h2v_C          233 PYLAFDSILCEALQHNLPPFTPPP-----------------HTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVI  295 (771)
T ss_dssp             GGGGGTTTCCGGGCBCCCCCCCCC-----------------CCTTCCCCCCCBCCCCCCGGGCTTSSCCCCTTSHHHHHH
T ss_pred             hhhhccccccccccCCCCCCCCCC-----------------CcccccCCccceeeeccCCccccccccCCCcchHHHHHH
Confidence            999999999999999999999983                 23345688888899999987764     26789999999


Q ss_pred             HHHHHHHHHhccccHHHHHHHhhcCCC--CCCchhhHHHHHHHHhhcCCCCCCcchhHHHHHHHHHhcCCCCchHHHHHH
Q 002933          316 EEYLLDVLLFFNGCRKECAFYMVNLPV--PFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGA  393 (864)
Q Consensus       316 ee~i~Dii~~f~~nRKecA~~Ll~lp~--t~k~E~~iVEtIfs~lf~LP~p~~~~vYY~slLiELCK~~P~~iapvlgrA  393 (864)
                      +++++||+.+|++||||||++|+++|.  ++++||+||||||++||+||+|+++.+|||+||+||||++|++|||+||+|
T Consensus       296 re~ildIi~~~~~nrkecA~~Ll~l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~a  375 (771)
T 1h2v_C          296 EENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQA  375 (771)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence            999999999999999999999999984  578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhhhcccCccccccccccccCCCCCCchHHHHHHHHHHHHhhchhHHHHHhcCCcch
Q 002933          394 VRALFDKIADLDMECRIRFILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPA  473 (864)
Q Consensus       394 ir~ly~~l~~mD~e~~~Rf~dWFS~HLSNF~F~W~W~eW~~~l~l~~~hPk~~Fir~vLeKeiRLSY~~RIk~slP~~~~  473 (864)
                      ||++|+++++||++|++||++|||||||||+|+|+|++|++|++++..||||+|||++|+||+||||++|||++||+  +
T Consensus       376 i~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fik~ll~k~~RLSy~~rIk~~lP~--~  453 (771)
T 1h2v_C          376 TEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPP--T  453 (771)
T ss_dssp             HHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTSCHHHHHTTSCG--G
T ss_pred             HHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHHHHHHHHHHhhhhHHHHHHhCcH--H
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996  8


Q ss_pred             hhccCCCCCCCCccccCCCCccCchhHHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC---C------chhHHHHHHHHH
Q 002933          474 LEELLPPKGGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIH---G------LGVTIKVVVQTL  544 (864)
Q Consensus       474 ~~~llP~~p~P~~~y~~e~~~~~~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~---g------~~~~i~vfvq~l  544 (864)
                      |++++|++|.|+|+|.++++ .+.|+++.|++|.+++|+|++++||+++|++...+..   |      ..+++++|+||+
T Consensus       454 ~~~llp~~p~p~f~y~~e~~-~~~p~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~l  532 (771)
T 1h2v_C          454 FSALCPSNPTCIYKYGDESS-NSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTL  532 (771)
T ss_dssp             GGGGSCCCCCCCCTTSTTSC-TTSTTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHH
T ss_pred             HHhhCCCCCCCCceeCCccc-cCCcchHHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHH
Confidence            99999999999999988753 3468899999999999999999999999997322111   1      127999999999


Q ss_pred             HHhccchhhhHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhCCCcchhHHHHhhhccccChhhHHHhhcCcccccc
Q 002933          545 LDIGSKSFTHLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQ  624 (864)
Q Consensus       545 l~~GsKSfSH~~~~iery~~~lk~l~~~~~~q~~il~~v~~~W~~~pQ~~~ivvDkll~~~Iv~p~~Vv~W~F~~~~~~~  624 (864)
                      |++|||||||++++|+||+++||++++++++|.+||++|++||++||||+++++||||+|+||+|.+||+|+|+++|.++
T Consensus       533 l~~GskS~SH~~~~lery~~~lk~l~~~~~~q~~il~~v~~~W~~~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~  612 (771)
T 1h2v_C          533 LHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRD  612 (771)
T ss_dssp             HHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTT
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             ccccCchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhhhhHhHHhH
Q 002933          625 FHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHA  704 (864)
Q Consensus       625 ~~~~~~~WEil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (864)
                      | +++|+||||++||+||++||++++++++++|++++.+++.+.++       +           ++++++        +
T Consensus       613 ~-~~~~~weil~~ti~kv~~rv~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~--------~  665 (771)
T 1h2v_C          613 F-TRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDD-------D-----------DRSSDR--------K  665 (771)
T ss_dssp             T-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred             H-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------c-----------cccccc--------c
Confidence            7 47999999999999999999999999999999886543222111       0           011111        1


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCcccccccccchhhhcccCCccccccc
Q 002933          705 EKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELD  784 (864)
Q Consensus       705 ~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~lfl~~~~~Fi~~L~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (864)
                      ++      +.++++|++|++|++|+++||+||+.+|||||++|++|+++|+++|++                        
T Consensus       666 ~~------~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~~~~------------------------  715 (771)
T 1h2v_C          666 DG------VLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTS------------------------  715 (771)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------------------------
T ss_pred             cc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccCCC------------------------
Confidence            33      366889999999999999999999999999999999999999998875                        


Q ss_pred             ccCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCChhhHH--HHHhccCC
Q 002933          785 NENGRPKKSQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRR--AVYSGLHR  861 (864)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~g~~~~~~~~~~~~i~~~~~~l~~~~ft~~~~~~~~~--~~~~~~~~  861 (864)
                                             ++++||+|++||||+|+|+|+++|++|++||++++||+|+||+|++  .+|+|||+
T Consensus       716 -----------------------~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~l~~~~f~~~~d~~i~~v~~~f~~l~~  771 (771)
T 1h2v_C          716 -----------------------VLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA  771 (771)
T ss_dssp             -----------------------SCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred             -----------------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhC
Confidence                                   3689999999999999999999999999999999999999999999  59999996

PyMOL of 1h2v

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14	Back alignment and structure

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}	Back alignment and structure

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14	Back alignment and structure

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0	Back alignment and structure

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		864
d1h2vc2		190	a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-bi	4e-73
d1h2vc3		310	a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-bi	5e-71
d1h2vc1		262	a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin	8e-65
d1ug3a2		127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	2e-07

>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 190	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  235 bits (602), Expect = 4e-73
 Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 4/173 (2%)

Query: 310 IDRFILEEYLLDVLLFFNGCRKECAFYMVNLPVPFRY--EYLMAETIFSQLLLLPQPPFK 367
           ++RF++EE L  ++      RK CA  +V+ P   +    Y + E IF++L  LP PP  
Sbjct: 19  VERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHI 78

Query: 368 PIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRIRFILWFSHHLSNFQFIW 427
            + YT ++++LCK  PG+ P V+A A   L+ ++  ++  C  RFI WFSHHLSNFQF W
Sbjct: 79  DVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRW 138

Query: 428 PWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPP 480
            WE+W+  L     +P+  FV+EVLE+ +RLSY  ++   +   P    L P 
Sbjct: 139 SWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIV--PPTFSALCPS 189

PyMOL of d1h2vc2

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 310	Back information, alignment and structure

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262	Back information, alignment and structure

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		864
d1h2vc3		310	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1h2vc2		190	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1h2vc1		262	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	98.26
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	98.14
d1ug3a2		127	Eukaryotic initiation factor eIF4G {Human (Homo sa	98.05
d1paqa_		161	Translation initiation factor eIF-2b epsilon {Bake	92.42

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-68  Score=571.58  Aligned_cols=299  Identities=21%  Similarity=0.362  Sum_probs=253.6

Q ss_pred             CCCCccccCCCCccCchhHHHHHHHHHHhcCCCCHHHHHHHHHhhccCCCCc---------hhHHHHHHHHHHHhccchh
Q 002933          482 GGPNFKYSMEDGRERSEEHALSAELTNKVKGRQTAREIIVWVEESVYPIHGL---------GVTIKVVVQTLLDIGSKSF  552 (864)
Q Consensus       482 p~P~~~y~~e~~~~~~~~~~~a~~l~~~lk~k~~~~ei~~~l~e~~~~~~g~---------~~~i~vfvq~ll~~GsKSf  552 (864)
                      |.|.|||.++ +..+.|++++|++|++++|+|++++||+++|++...+..+.         .++|+||+||+|++|||||
T Consensus         1 p~~~fky~~e-~~~~~P~~~~a~~L~~~ir~K~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~vfvqtll~~GSKSf   79 (310)
T d1h2vc3           1 PTCIYKYGDE-SSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSF   79 (310)
T ss_dssp             CCCCCTTSTT-SCTTSTTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCCccccCCc-CCCCCChHHHHHHHHHHHHccCCHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHccchH
Confidence            6899999887 55567999999999999999999999999999854433221         3899999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhCCCcchhHHHHhhhccccChhhHHHhhcCccccccccccCchH
Q 002933          553 THLITVLERYGQVISKICPDHDKQLMLIEEVSLFWKNNTQNAAISIDRMMGYRLISNLAIVRWVFSPENIDQFHASDRPW  632 (864)
Q Consensus       553 SH~~~~iery~~~lk~l~~~~~~q~~il~~v~~~W~~~pQ~~~ivvDkll~~~Iv~p~~Vv~W~F~~~~~~~~~~~~~~W  632 (864)
                      ||++++|+||+++||.+++++++|.+||++|++||++||||+++++||||+|+||+|.+||+|+|+++|.++| +++|+|
T Consensus        80 SH~~~~lery~~~lk~l~~~~~~q~~il~~v~~~W~~~~q~~~v~~dkll~~~ii~~~aVv~W~fs~~~~~~~-~~~~~w  158 (310)
T d1h2vc3          80 SHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF-TRLFVW  158 (310)
T ss_dssp             HHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTT-TSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHcCCcChHHHHHHhcChhhhhHH-hhhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998887 579999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCChhhhhHhHHhHhhhhhhhh
Q 002933          633 EVLRNAVSKTYNRICDLRKEIISLKKGVTLAEEAAAKAKAELEAAESKLSLVDGEPVLGGNPARLSRLKLHAEKAKNEEI  712 (864)
Q Consensus       633 Eil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (864)
                      |+|++||+||++|+++++++++++++++..+....    .+  +..             .             .....+.
T Consensus       159 E~l~~tl~kv~~rv~~~~~ele~~~~~l~~~~~~~----~~--~~~-------------~-------------~~~~~~~  206 (310)
T d1h2vc3         159 EILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRR----SD--DDD-------------R-------------SSDRKDG  206 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hh--hhh-------------h-------------ccccccc
Confidence            99999999999999999999999999875421110    00  000             0             0000112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCcccccccccchhhhcccCCcccccccccCCCCCC
Q 002933          713 SAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRPKK  792 (864)
Q Consensus       713 ~~~~~~e~~~~~l~~a~~eqk~lfl~~~~~Fi~~L~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (864)
                      .+++++|+++++|++|+.|||+||+.+||+|+++|+||+++|+++|++                                
T Consensus       207 ~~~~~~e~~~~~Le~a~~eqk~Lfl~i~q~Fv~iLse~l~~~e~~~~~--------------------------------  254 (310)
T d1h2vc3         207 VLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTS--------------------------------  254 (310)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------------------------------
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc--------------------------------
Confidence            367789999999999999999999999999999999999999998875                                


Q ss_pred             CCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCChhhHHH--HHhccCC
Q 002933          793 SQSNGGSSGNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRA--VYSGLHR  861 (864)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~W~~~~~g~~~~~~~~~~~~i~~~~~~l~~~~ft~~~~~~~~~~--~~~~~~~  861 (864)
                                     ++++||+|++||||+|||+|++++++|+++||+++||+|+||+|+++  +|++||+
T Consensus       255 ---------------~~~~W~~~~~grlk~~~~~y~~~~~~~~~~Le~~~ft~~~dp~il~vf~qf~aL~~  310 (310)
T d1h2vc3         255 ---------------VLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA  310 (310)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhC
Confidence                           57999999999999999999999999999999999999999999999  9999985

PyMOL of d1h2vc3

>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure