Citrus Sinensis ID: 002934
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 864 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZSM8 | 856 | Histone-lysine N-methyltr | yes | no | 0.930 | 0.939 | 0.587 | 0.0 | |
| Q8S4P4 | 895 | Histone-lysine N-methyltr | N/A | no | 0.931 | 0.899 | 0.533 | 0.0 | |
| P93831 | 902 | Histone-lysine N-methyltr | no | no | 0.939 | 0.900 | 0.473 | 0.0 | |
| Q8S4P6 | 931 | Histone-lysine N-methyltr | N/A | no | 0.925 | 0.859 | 0.463 | 0.0 | |
| Q8S4P5 | 894 | Histone-lysine N-methyltr | N/A | no | 0.416 | 0.402 | 0.776 | 1e-169 | |
| O65312 | 689 | Histone-lysine N-methyltr | no | no | 0.385 | 0.483 | 0.534 | 1e-107 | |
| Q28D84 | 748 | Histone-lysine N-methyltr | yes | no | 0.350 | 0.405 | 0.424 | 6e-69 | |
| Q98SM3 | 748 | Histone-lysine N-methyltr | N/A | no | 0.350 | 0.405 | 0.421 | 1e-68 | |
| Q61188 | 746 | Histone-lysine N-methyltr | yes | no | 0.350 | 0.406 | 0.430 | 1e-68 | |
| Q15910 | 746 | Histone-lysine N-methyltr | yes | no | 0.350 | 0.406 | 0.427 | 2e-68 |
| >sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/853 (58%), Positives = 615/853 (72%), Gaps = 49/853 (5%)
Query: 30 KLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFGNM----- 84
+L++LK+++Q ERV S+K+K E NRKK++ +S S S ++ A DNG NM
Sbjct: 35 RLSELKRKIQGERVRSIKEKFEANRKKVDAHVSPFSSAASSRAT--AEDNGNSNMLSSRM 92
Query: 85 --PLCKYSGFPQGLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSV 142
PLCK +GF G+GDRDYV + +V+ S S KL ++IPPYTTWIFLD+NQRMAEDQSV
Sbjct: 93 RMPLCKLNGFSHGVGDRDYVPTKDVI-SASVKLPIAERIPPYTTWIFLDRNQRMAEDQSV 151
Query: 143 VGRRRIYYDQHGSEALVCSDSEEDIIEPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAV 202
VGRR+IYY+QHG E L+CSDSEE+ EEEK EFS+GED I+W + +E+G+GEEV +A+
Sbjct: 152 VGRRQIYYEQHGGETLICSDSEEEPEP-EEEKREFSEGEDSIIWLIGQEYGMGEEVQDAL 210
Query: 203 SQFIGIATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKSLSAALDSFDNLFCRRC 262
Q + + S++ +RY+ LK K D +N +EF ++G + GI+LEK L AALDSFDNLFCRRC
Sbjct: 211 CQLLSVDASDILERYNELKLK-DKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFCRRC 269
Query: 263 LLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCSNHCYLQSRAVQDTVEGSAGNISSII 322
L+FDCRLHGCSQ LI+ SEKQPYWS+YE DRKPCS HCYLQ +AV++ E + S
Sbjct: 270 LVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASKAE 329
Query: 323 TNTEGTLLH--CNAEVPGAHSDIMAGERCNSKRVLPVTSEAVDSSEVAIGNENTDTSMQS 380
+++VP A + + S V+ +++ I N ++ + ++
Sbjct: 330 EKASEEECSKAVSSDVPHAAASGV--------------SLQVEKTDIGIKNVDSSSGVEQ 375
Query: 381 ----LGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLTASSDGIPRPDT---KSGHH 433
GKR+ L DS + +L+ K++K D + + +P D +
Sbjct: 376 EHGIRGKREVPILKDSNDL-----PNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGD 430
Query: 434 VGAINDNELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGAKDVNK--EPEMKQSFSKGELP 491
G DN++ S+ AK V ++++ DG + + + E+
Sbjct: 431 QGGTTDNKVNRDSE------ADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMS 484
Query: 492 EGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKS 551
E S+EW PIEK+LYLKGVEIFGRNSCLIARNLLSGLKTC++VS YMR++ S+ +S
Sbjct: 485 ETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRS 544
Query: 552 VAPSSFLEETVKVDTDYAEQEMPARPRLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQ 611
P+ L++ + D E+P R RL RR+G+ RKLKYS KSAGHPS+WKRIA GKNQ
Sbjct: 545 STPNLLLDDG-RTDPGNDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQ 603
Query: 612 SCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFA 671
SCKQYTPCGC SMCGK CPCL N TCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFA
Sbjct: 604 SCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFA 663
Query: 672 AGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFL 731
AGRECDPDVCRNCWVSCGDGSLGE P+RG+GQCGNMRLLLRQQQRILL KSDVAGWGAFL
Sbjct: 664 AGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFL 723
Query: 732 KNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFAN 791
KNSVSKN+YLGEYTGELISH EADKRGKIYDRANSSFLFDLNDQYVLDA RKGDKLKFAN
Sbjct: 724 KNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGDKLKFAN 783
Query: 792 HSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSKREDS 851
HS+ PNC+AKVM VAGDHRVGIFA E IEASEELFYDYRYGPDQAP WARKPEGSK++DS
Sbjct: 784 HSAKPNCYAKVMFVAGDHRVGIFANERIEASEELFYDYRYGPDQAPVWARKPEGSKKDDS 843
Query: 852 SVSQGRAKKHQSH 864
+++ RA+KHQSH
Sbjct: 844 AITHRRARKHQSH 856
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Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S4P5|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O65312|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q28D84|EZH2_XENTR Histone-lysine N-methyltransferase EZH2 OS=Xenopus tropicalis GN=ezh2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q98SM3|EZH2A_XENLA Histone-lysine N-methyltransferase EZH2 OS=Xenopus laevis GN=ezh2-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q61188|EZH2_MOUSE Histone-lysine N-methyltransferase EZH2 OS=Mus musculus GN=Ezh2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15910|EZH2_HUMAN Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens GN=EZH2 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 864 | ||||||
| 255548445 | 884 | enhancer of zeste, ezh, putative [Ricinu | 0.996 | 0.973 | 0.682 | 0.0 | |
| 224128312 | 812 | SET domain protein [Populus trichocarpa] | 0.930 | 0.990 | 0.706 | 0.0 | |
| 225437573 | 906 | PREDICTED: histone-lysine N-methyltransf | 0.998 | 0.952 | 0.681 | 0.0 | |
| 356501867 | 868 | PREDICTED: histone-lysine N-methyltransf | 0.978 | 0.973 | 0.627 | 0.0 | |
| 356534774 | 869 | PREDICTED: histone-lysine N-methyltransf | 0.966 | 0.960 | 0.620 | 0.0 | |
| 449515891 | 889 | PREDICTED: LOW QUALITY PROTEIN: histone- | 0.959 | 0.932 | 0.613 | 0.0 | |
| 449469026 | 889 | PREDICTED: histone-lysine N-methyltransf | 0.959 | 0.932 | 0.614 | 0.0 | |
| 357442237 | 829 | Histone-lysine N-methyltransferase EZA1 | 0.928 | 0.967 | 0.584 | 0.0 | |
| 34393752 | 814 | PHCLF3 [Petunia x hybrida] | 0.905 | 0.960 | 0.591 | 0.0 | |
| 350536471 | 829 | EZ1 protein [Solanum lycopersicum] gi|15 | 0.943 | 0.983 | 0.599 | 0.0 |
| >gi|255548445|ref|XP_002515279.1| enhancer of zeste, ezh, putative [Ricinus communis] gi|223545759|gb|EEF47263.1| enhancer of zeste, ezh, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/887 (68%), Positives = 710/887 (80%), Gaps = 26/887 (2%)
Query: 1 MVSRASDSSSKSRKSYSEQSNDGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIEND 60
M+S+++DS SK RKS+ EQSN+ +GNL+YK+N LKKQ+QAER+ S+K+K+E NRKK+E+D
Sbjct: 1 MLSKSTDSVSKLRKSHGEQSNECIGNLSYKMNLLKKQIQAERIFSIKEKVENNRKKLESD 60
Query: 61 ISQLLSTTSRKSVIFAMDNGFGNM--PLCKYSGFPQGLGDRDYVNSHEVVLSTSSKLSHV 118
++Q++ +SR + F + PLCKYSGF QG GD+DY+N HEV+ TS+K+ V
Sbjct: 61 VAQIMLASSRIDALNIGQTNFSRIGSPLCKYSGFAQGSGDKDYINGHEVIPWTSTKIPFV 120
Query: 119 QKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEEKHEFS 178
++IPPYTTWIFLD+NQRMAEDQSVVGRRRIYYDQ+G+EAL+CSDSEEDI EPEEEKH+FS
Sbjct: 121 ERIPPYTTWIFLDRNQRMAEDQSVVGRRRIYYDQNGNEALICSDSEEDIAEPEEEKHDFS 180
Query: 179 DGEDRILWTVFEEHGLGEEVINAVSQFIGIATSEVQDRYSTLKEKYDG-KNLKEFEDAGH 237
+GEDRILW VF+EHGL EEV+N VSQFIG+ S++Q+R S LKE++D +N K+ D+
Sbjct: 181 EGEDRILWMVFQEHGLAEEVLNIVSQFIGVPISDIQERCSMLKERFDEEQNGKDSGDSAS 240
Query: 238 ERGIALEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCS 297
E+GI+LEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQ LINPSEKQPYWSEYEDDRKPCS
Sbjct: 241 EKGISLEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQALINPSEKQPYWSEYEDDRKPCS 300
Query: 298 NHCYLQSRAVQDTVEGS---AGNISSIITNTEG--TLLHCNAEVPGAH---SDIMAGERC 349
+ C+L+ + V+D E S A N + EG T NA+ P +D+ +
Sbjct: 301 DQCFLRLKVVRDLPESSVNCALNRMKTASLEEGKKTAGASNAQEPSGADDGADLSKDDSY 360
Query: 350 NSKRVLPVTSEAVDSSEVAIGNENTDT-----SMQSLGKRKA-----LELNDSVKVFDEI 399
S++ + V S + SE + + N DT + + + KRK ++L+DS V ++
Sbjct: 361 ISQKEISVASGTLCHSEASEAS-NLDTCAMIHNQEHMRKRKEPELTNVDLDDSTPVPSDL 419
Query: 400 EESLNKKQKKLLPLDVLTASSDGIPRPDTKSGHHVGAINDNELQMTSKNTIKK--SVSAK 457
S NKKQK+LL D + + I D +G + +ELQ+T+KNT+ ++K
Sbjct: 420 HNSSNKKQKRLLGSDAASKDIENISSLDDLAGTE-KTTDTSELQITTKNTLNNPSEYASK 478
Query: 458 VVSHNNIEHNIMDGAKDVNKEPEMKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGR 517
+ + IE I+D A D K PE+ QS S EGVL S WKPIEKELYLKGVEIFG+
Sbjct: 479 EIVSSAIE-KILDEANDATKGPELIQSSSTDRQLEGVLSRSRWKPIEKELYLKGVEIFGK 537
Query: 518 NSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMPARP 577
NSCLIARNLLSGLKTCMEVS YM DS ++PHKSVAPSS L++ K DTDY EQE+ R
Sbjct: 538 NSCLIARNLLSGLKTCMEVSNYMCDSGVTVPHKSVAPSSILDDNGKTDTDYTEQEISTRS 597
Query: 578 RLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC 637
RLLR+RGR RKLKYSWKSAGHP+ WKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC
Sbjct: 598 RLLRKRGRTRKLKYSWKSAGHPASWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC 657
Query: 638 CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPP 697
CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGD SLGEPP
Sbjct: 658 CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDSSLGEPP 717
Query: 698 KRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR 757
KRGDGQCGNMRLLLRQQQRILLAKS++AGWGAFLKN V+KNDYLGEYTGELISHREADKR
Sbjct: 718 KRGDGQCGNMRLLLRQQQRILLAKSNIAGWGAFLKNPVNKNDYLGEYTGELISHREADKR 777
Query: 758 GKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKE 817
GKIYDRANSSFLFDLN+QYVLDAYRKGDKLKFANHSSNPNC+AKVMLVAGDHRVGIFAKE
Sbjct: 778 GKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKE 837
Query: 818 HIEASEELFYDYRYGPDQAPAWARKPEGSKREDSSVSQGRAKKHQSH 864
HIEASEELFYDYRYGPDQAPAWARKPEGS+R++S+VSQGRAKKHQSH
Sbjct: 838 HIEASEELFYDYRYGPDQAPAWARKPEGSRRDESTVSQGRAKKHQSH 884
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128312|ref|XP_002320296.1| SET domain protein [Populus trichocarpa] gi|222861069|gb|EEE98611.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225437573|ref|XP_002270605.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356501867|ref|XP_003519745.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534774|ref|XP_003535927.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449515891|ref|XP_004164981.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EZA1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449469026|ref|XP_004152222.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357442237|ref|XP_003591396.1| Histone-lysine N-methyltransferase EZA1 [Medicago truncatula] gi|355480444|gb|AES61647.1| Histone-lysine N-methyltransferase EZA1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|34393752|dbj|BAC84952.1| PHCLF3 [Petunia x hybrida] | Back alignment and taxonomy information |
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| >gi|350536471|ref|NP_001234760.1| EZ1 protein [Solanum lycopersicum] gi|156789072|gb|ABU96077.1| EZ1 [Solanum lycopersicum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 864 | ||||||
| TAIR|locus:2132178 | 856 | SWN "SWINGER" [Arabidopsis tha | 0.939 | 0.948 | 0.516 | 2.1e-219 | |
| TAIR|locus:2005501 | 902 | CLF "CURLY LEAF" [Arabidopsis | 0.633 | 0.606 | 0.483 | 1.2e-134 | |
| TAIR|locus:2196110 | 689 | MEA "MEDEA" [Arabidopsis thali | 0.394 | 0.494 | 0.508 | 4.5e-131 | |
| ZFIN|ZDB-GENE-050114-1 | 749 | ezh1 "enhancer of zeste homolo | 0.274 | 0.316 | 0.486 | 7.3e-80 | |
| UNIPROTKB|E1BD02 | 751 | EZH2 "Uncharacterized protein" | 0.267 | 0.307 | 0.491 | 1e-74 | |
| UNIPROTKB|E1C0W5 | 761 | EZH2 "Uncharacterized protein" | 0.267 | 0.303 | 0.491 | 5.4e-74 | |
| UNIPROTKB|E2R6Q2 | 751 | EZH2 "Uncharacterized protein" | 0.267 | 0.307 | 0.491 | 6.9e-74 | |
| UNIPROTKB|Q15910 | 746 | EZH2 "Histone-lysine N-methylt | 0.267 | 0.309 | 0.491 | 2.9e-73 | |
| UNIPROTKB|Q4R381 | 746 | EZH2 "Histone-lysine N-methylt | 0.267 | 0.309 | 0.491 | 2.9e-73 | |
| UNIPROTKB|I3L7H6 | 737 | EZH2 "Uncharacterized protein" | 0.267 | 0.313 | 0.491 | 3.7e-73 |
| TAIR|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2119 (751.0 bits), Expect = 2.1e-219, P = 2.1e-219
Identities = 445/861 (51%), Positives = 550/861 (63%)
Query: 22 DGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGF 81
D L L +L++LK+++Q ERV S+K+K E NRKK++ +S S S ++ A DNG
Sbjct: 27 DRLEGLENRLSELKRKIQGERVRSIKEKFEANRKKVDAHVSPFSSAASSRAT--AEDNGN 84
Query: 82 GNMPLCKYSGFP--QGLGDRDYVNSHEVVLSTSSKLSHVQKIP-----PYTTWIFLDKNQ 134
NM L P + G V + V T +S K+P P T
Sbjct: 85 SNM-LSSRMRMPLCKLNGFSHGVGDRDYV-PTKDVISASVKLPIAERIPPYTTWIFLDRN 142
Query: 135 RMAEDQSVVGRRRIYYDQHGSEALVCXXXXXXXXXXXXXKHEFSDGEDRILWTVFEEHGL 194
+ + V RR Y + + K EFS+GED I+W + +E+G+
Sbjct: 143 QRMAEDQSVVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEGEDSIIWLIGQEYGM 202
Query: 195 GEEVINAVSQFIGIATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKSLSAALDSF 254
GEEV +A+ Q + + S++ +RY+ LK K D +N +EF ++G + GI+LEK L AALDSF
Sbjct: 203 GEEVQDALCQLLSVDASDILERYNELKLK-DKQNTEEFSNSGFKLGISLEKGLGAALDSF 261
Query: 255 DNLFCRRCLLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCSNHCYLQSRAVQDTVEGS 314
DNLFCRRCL+FDCRLHGCSQ LI+ SEKQPYWS+YE DRKPCS HCYLQ +AV++ E +
Sbjct: 262 DNLFCRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPE-T 320
Query: 315 AGNISSIITNTEGTLLHCNAEVPGAHSDIMAGERCNSKRVLPVTSEAVDSSEVAIGNENT 374
N +S + + C+ V SD+ S V+ +++ I N ++
Sbjct: 321 CSNFASK-AEEKASEEECSKAVS---SDVPHAAASG-------VSLQVEKTDIGIKNVDS 369
Query: 375 DTSMQS----LGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLTASSDGIPRPD--- 427
+ ++ GKR+ L DS +++ NKKQK D + + +P D
Sbjct: 370 SSGVEQEHGIRGKREVPILKDS----NDLPNLSNKKQKTAAS-DTKMSFVNSVPSLDQAL 424
Query: 428 --TKSGHHVGAINDNELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGAKDVNK--EPEMKQ 483
TK G DN++ S+ AK V ++++ DG + +
Sbjct: 425 DSTKGDQ--GGTTDNKVNRDSE------ADAKEVGEPIPDNSVHDGGSSICQPHHGSGNG 476
Query: 484 SFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRDS 543
+ E+ E S+EW PIEK+LYLKGVEIFGRNSCLIARNLLSGLKTC++VS YMR++
Sbjct: 477 AIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMREN 536
Query: 544 SSSMPHKSVAPSSFLEETVKVDTDYAEQEMXXXXXXXXXXXXXXKLKYSWKSAGHPSIWK 603
S+ +S P+ L++ + D E+ KLKYS KSAGHPS+WK
Sbjct: 537 EVSVFRRSSTPNLLLDDG-RTDPGNDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWK 595
Query: 604 RIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCR 663
RIA GKNQSCKQYTPCGC SMCGK CPCL N TCCEKYCGCSKSCKNRFRGCHCAKSQCR
Sbjct: 596 RIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHCAKSQCR 655
Query: 664 SRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMXXXXXXXXXXXXAKSD 723
SRQCPCFAAGRECDPDVCRNCWVSCGDGSLGE P+RG+GQCGNM KSD
Sbjct: 656 SRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGKSD 715
Query: 724 VAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRK 783
VAGWGAFLKNSVSKN+YLGEYTGELISH EADKRGKIYDRANSSFLFDLNDQYVLDA RK
Sbjct: 716 VAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRK 775
Query: 784 GDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKP 843
GDKLKFANHS+ PNC+AKVM VAGDHRVGIFA E IEASEELFYDYRYGPDQAP WARKP
Sbjct: 776 GDKLKFANHSAKPNCYAKVMFVAGDHRVGIFANERIEASEELFYDYRYGPDQAPVWARKP 835
Query: 844 EGSKREDSSVSQGRAKKHQSH 864
EGSK++DS+++ RA+KHQSH
Sbjct: 836 EGSKKDDSAITHRRARKHQSH 856
|
|
| TAIR|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050114-1 ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R6Q2 EZH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q15910 EZH2 "Histone-lysine N-methyltransferase EZH2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4R381 EZH2 "Histone-lysine N-methyltransferase EZH2" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L7H6 EZH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8S4P4 | EZ3_MAIZE | 2, ., 1, ., 1, ., 4, 3 | 0.5337 | 0.9317 | 0.8994 | N/A | no |
| Q9ZSM8 | EZA1_ARATH | 2, ., 1, ., 1, ., 4, 3 | 0.5873 | 0.9305 | 0.9392 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.946 |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 864 | |||
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 4e-36 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 1e-24 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 5e-12 | |
| pfam03638 | 42 | pfam03638, CXC, Tesmin/TSO1-like CXC domain | 3e-04 |
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 4e-36
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 716 RILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDR--ANSSFLFDLN 773
++ + KS GWG + K +++GEY GE+I+ EA++R K YD A + +LFD++
Sbjct: 2 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDID 61
Query: 774 DQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRY 831
+DA RKG+ +F NHS PNC + V GD R+ IFA I+ EEL DY
Sbjct: 62 SDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGS 119
|
Putative methyl transferase, based on outlier plant homologues. Length = 124 |
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 864 | |||
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 100.0 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 100.0 | |
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 99.95 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.9 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 99.9 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 99.75 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 99.69 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.55 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.48 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 98.92 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 98.5 | |
| KOG2461 | 396 | consensus Transcription factor BLIMP-1/PRDI-BF1, c | 98.11 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 97.69 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 92.74 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 92.27 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 92.14 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 91.8 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 91.63 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 91.02 | |
| smart00570 | 51 | AWS associated with SET domains. subdomain of PRES | 90.87 | |
| KOG1171 | 406 | consensus Metallothionein-like protein [Inorganic | 90.74 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 88.45 | |
| PF03638 | 42 | TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do | 84.1 | |
| PF09111 | 118 | SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain | 81.71 |
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-125 Score=1060.01 Aligned_cols=687 Identities=36% Similarity=0.571 Sum_probs=540.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccchhhhccCCCC----Cc---CCccccCCCC
Q 002934 22 DGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFG----NM---PLCKYSGFPQ 94 (864)
Q Consensus 22 ~~~~~L~~~i~~LKkqi~~eR~~~ik~k~e~N~~~l~~~~~~l~~~~~~~~r~~~~~~~~~----~~---~l~~~~g~~~ 94 (864)
+.++.+...+..+|+ ++..++.+++++-..++.+...+|+-+- +++.+ ........+ .| |++++||+..
T Consensus 37 ~~~e~i~~~~~E~k~-~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~--~~i~~~n~~~~v~~~~~~~~~q~nfmv~ 112 (739)
T KOG1079|consen 37 DRLEKIKILNCEWKK-RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQK--SPINELNAVAQVPIMYSWPPLQQNFMVE 112 (739)
T ss_pred HHHHHHHHHHHHHhh-hhcccccccccccccccccccccccccc-Ccccc--cchhhhcccccccccccCChhhhcceec
Confidence 456666666666666 7777888888888888888888888774 55552 222222222 22 9999999999
Q ss_pred CCCCCCcccccccccccccccccCCCCCCCceeEEeeccccccccccccccceeeEeCCCCeEEEecCCccccCCCcccc
Q 002934 95 GLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEEK 174 (864)
Q Consensus 95 ~~~d~d~~~~~~v~~~~~iklp~v~klPpYTtWifldrNqrMaedqsvvgrrriYYD~~g~EalicSdseee~~e~eeek 174 (864)
+..+.+++..-++. +..||+|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+||| ++++|||
T Consensus 113 ~~~~~~~ip~~~~~-v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e-~~~~~ek 188 (739)
T KOG1079|consen 113 DETVLHNIPYMGDE-VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEE-EVLEEEK 188 (739)
T ss_pred ccceeccccccccc-ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccc-cchhhhc
Confidence 99999988877754 67899999999999999999999999999999999999999 99999999 999999 8889999
Q ss_pred ccCCcccch-hhhhHhhhcCChHHHHHHHHHHhc--CCcHHHHHHHHHhHhhcCCCCCccccccccccccchhhh-hhHH
Q 002934 175 HEFSDGEDR-ILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKS-LSAA 250 (864)
Q Consensus 175 ~~f~~~ed~-~~~~~~~e~g~sd~v~~~l~~~~~--~~~sei~eRy~~L~~k~~~~~~~~~~~~~~~~~~~~~k~-l~~a 250 (864)
++|.+++|. ++|++.+.++++++||.+|+++|. ++++||+|||.+|+++..+...+...+.+++. +.+++. ++++
T Consensus 189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~id~-~~ae~~~r~~~ 267 (739)
T KOG1079|consen 189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPNIDG-SSAEPVQREQA 267 (739)
T ss_pred ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccCCCc-cccChHHHHhh
Confidence 999999999 899999999999999999999995 99999999999999986655555555444544 445555 9999
Q ss_pred hhcccccccccccccccCCcCcCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhccccccccCcCCCccccccccccccc
Q 002934 251 LDSFDNLFCRRCLLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCSNHCYLQSRAVQDTVEGSAGNISSIITNTEGTLL 330 (864)
Q Consensus 251 ldsFdnlFCRRClvfDC~lHgcsq~li~~~ekq~~~~~~~~d~~PCg~~Cyl~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 330 (864)
|||||||||||||+|||+||| +|.++||.++.-.|.++..+..|||+.||.++.+........ +.+
T Consensus 268 l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m~~---------~~~---- 333 (739)
T KOG1079|consen 268 LHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTMSA---------VVS---- 333 (739)
T ss_pred hcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhhhc---------ccc----
Confidence 999999999999999999999 999999999999999999999999999999986654331100 000
Q ss_pred cCCCCCCCCCCccccccccCcccccccccccccchhhhcCCCCCccchhhhhcccccccccccchhhHHHHHHHHhhhhc
Q 002934 331 HCNAEVPGAHSDIMAGERCNSKRVLPVTSEAVDSSEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEIEESLNKKQKKL 410 (864)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (864)
..+.+. + .++|+..
T Consensus 334 ----~~~p~~-----g---------------------------------------------------------~~~qk~~ 347 (739)
T KOG1079|consen 334 ----KCPPIR-----G---------------------------------------------------------DIRQKLV 347 (739)
T ss_pred ----cCCCCc-----c---------------------------------------------------------hhhhhhc
Confidence 000000 0 0112211
Q ss_pred cCccccccCCCCCCCCCCCCCCccccccccccccccccc--cccccccccccccccccccccCCccCCCCcccccCCCCC
Q 002934 411 LPLDVLTASSDGIPRPDTKSGHHVGAINDNELQMTSKNT--IKKSVSAKVVSHNNIEHNIMDGAKDVNKEPEMKQSFSKG 488 (864)
Q Consensus 411 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (864)
-.+++++. .+.. ..++....+...+..+.- .+.. ...++.........+.++......
T Consensus 348 ~~~~~~s~-------~~~~--~~e~~g~~~d~~v~~~~~~~~~~v---------~~~~~~~~s~~~~~c~~~~~~~~~-- 407 (739)
T KOG1079|consen 348 KASSMDSD-------DEHV--EEEDKGHDDDDGVPRGFGGSVNFV---------GEDDTSTHSSTNSICQNPVHGKKD-- 407 (739)
T ss_pred ccccCCcc-------hhhc--cccccCcccccccccccccccccc---------cCCcccccccccccccCcccccCC--
Confidence 11111110 0000 001100111111110000 0000 001111111112222222111110
Q ss_pred CCccccccCCCCcHHHHHHHHHhHhhcCCchHHHHHhhhCCCCcHHHHHHHHhhcCCCCCCCCCCCCccccccccccchh
Q 002934 489 ELPEGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDY 568 (864)
Q Consensus 489 ~~~~~~~~~~~W~~~E~~l~~k~v~ifG~N~C~iA~~ll~g~KTC~EV~~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (864)
...+|+++|+.||++|+.+||.|+|+|||+|+ +|||++||+||....... ++.... ..
T Consensus 408 -------~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~e~~~~--------~~~~~~----~~- 465 (739)
T KOG1079|consen 408 -------TNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQKEVLQG--------LYFDGR----FR- 465 (739)
T ss_pred -------cccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhcchhhc--------eecccc----cc-
Confidence 24689999999999999999999999999995 599999999998765311 111100 00
Q ss_pred hhhcCCCchhHHhhhhcccccccccCCCCCCcchhhcccCCccCCcCCcCCCCCCCC--CCCCcccCCCccccCCCCCCc
Q 002934 569 AEQEMPARPRLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMC--GKQCPCLHNGTCCEKYCGCSK 646 (864)
Q Consensus 569 ~~~e~~~r~r~~r~~~r~rklk~~~ks~~~p~~~kri~~~k~~~~~~y~PC~c~~~C--~~~C~C~~~g~~Ce~~CgC~~ 646 (864)
.....+.|++.+|+.|+.|++.+.|+++.|+..|. |+||+|+++| +.+|+|+.++++||++|+|+.
T Consensus 466 ~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~~------------~qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~ 533 (739)
T KOG1079|consen 466 VELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVWN------------YQPCDHPGPCNCGVGCPCIDNETFCEKFCYCSP 533 (739)
T ss_pred cccCcchhhHHHHhhhhHHHhhhcccccCCceeee------------cCcccCCCCCCCCCCCcccccCcchhhcccCCH
Confidence 01233456888999999999999999999877664 7777777555 689999999999999999999
Q ss_pred cccccccCcccCCCCccCCCcccccccCccCcccCcCcccCCCCCCCCCCCCCCCC-CCCchhhhhcccCcEEEEecCCC
Q 002934 647 SCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDG-QCGNMRLLLRQQQRILLAKSDVA 725 (864)
Q Consensus 647 ~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdPd~C~~C~~sCg~g~l~~p~~~~~~-~C~N~~lqrg~~~~l~V~kS~~k 725 (864)
+|.|||+||+| +++|++++|||++|.|||+|++|..||. .+..+++. .|+|+.+|++++++|+|+.|.+.
T Consensus 534 dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~~d~~~~~C~N~~l~~~~qkr~llapSdVa 604 (739)
T KOG1079|consen 534 DCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDHFDSSKISCKNTNLQRGEQKRVLLAPSDVA 604 (739)
T ss_pred HHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------ccccccCccccccchhhhhhhcceeechhhcc
Confidence 99999999999 9999999999999999999999999986 12334444 99999999999999999999999
Q ss_pred CceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccCccccccCCCcEEEeccccCCccccccCCCCCCcceeEEEE
Q 002934 726 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLV 805 (864)
Q Consensus 726 G~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~~sYlf~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V 805 (864)
|||||+++.+.|++||.||+||+|+++||++|+++|+..+.+|+|+|+.+|+|||+++||.+||+|||-+|||++.+++|
T Consensus 605 GwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V 684 (739)
T KOG1079|consen 605 GWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMV 684 (739)
T ss_pred ccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEEEEccCCCCCCeEEEecCCCCCCCCcccCCCCCCCCCCCCcccccccc
Q 002934 806 AGDHRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSKREDSSVSQGRAKK 860 (864)
Q Consensus 806 ~G~~RI~~fA~RDI~aGEELTfDYgy~~d~~pcwC~~pe~~~~d~~~~~~gra~k 860 (864)
+|++||||||+|.|.+||||||||+|+.+.++-|-+.+..+++++....+.+++|
T Consensus 685 ~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~~s~k~e~~~~q~~~~~ 739 (739)
T KOG1079|consen 685 AGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIERESYKVELKIFQATQQK 739 (739)
T ss_pred cCCcceeeeehhhcccCceeeeeeccCccccccccccCccccccchhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999998888887765
|
|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00570 AWS associated with SET domains | Back alignment and domain information |
|---|
| >KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C | Back alignment and domain information |
|---|
| >PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 864 | ||||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 7e-16 | ||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 2e-14 | ||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 5e-14 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 2e-13 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 6e-13 | ||
| 2o8j_A | 281 | Human Euchromatic Histone Methyltransferase 2 Lengt | 2e-10 | ||
| 3k5k_A | 283 | Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin | 2e-10 | ||
| 1mvh_A | 299 | Structure Of The Set Domain Histone Lysine Methyltr | 4e-10 | ||
| 2igq_A | 285 | Human Euchromatic Histone Methyltransferase 1 Lengt | 8e-10 | ||
| 3hna_A | 287 | Crystal Structure Of Catalytic Domain Of Human Euch | 9e-10 | ||
| 3fpd_A | 261 | G9a-Like Protein Lysine Methyltransferase Inhibitio | 1e-09 | ||
| 3bo5_A | 290 | Crystal Structure Of Methyltransferase Domain Of Hu | 4e-09 | ||
| 4i51_A | 286 | Methyltransferase Domain Of Human Euchromatic Histo | 5e-09 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 6e-08 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 1e-07 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 2e-07 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 4e-07 | ||
| 3f9w_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 4e-07 | ||
| 1ml9_A | 302 | Structure Of The Neurospora Set Domain Protein Dim- | 9e-06 | ||
| 1xqh_A | 264 | Crystal Structure Of A Ternary Complex Of The Methy | 7e-04 | ||
| 3cbm_A | 256 | Set79-Er-Adomet Complex Length = 256 | 7e-04 | ||
| 2f69_A | 261 | Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF1 | 8e-04 | ||
| 1o9s_A | 259 | Crystal Structure Of A Ternary Complex Of The Human | 8e-04 | ||
| 3m54_A | 261 | Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHC | 8e-04 | ||
| 4e47_A | 264 | Set79 IN COMPLEX WITH INHIBITOR (R)-(3-(3-Cyanophen | 8e-04 |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
|
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 | Back alignment and structure |
| >pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 | Back alignment and structure |
| >pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 | Back alignment and structure |
| >pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 | Back alignment and structure |
| >pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 | Back alignment and structure |
| >pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 | Back alignment and structure |
| >pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 | Back alignment and structure |
| >pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 | Back alignment and structure |
| >pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The Methyltransferase Set9 (Also Known As Set79) WITH A P53 Peptide And Sah Length = 264 | Back alignment and structure |
| >pdb|3CBM|A Chain A, Set79-Er-Adomet Complex Length = 256 | Back alignment and structure |
| >pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10 Peptide Length = 261 | Back alignment and structure |
| >pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Set79 Length = 259 | Back alignment and structure |
| >pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY Length = 261 | Back alignment and structure |
| >pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR (R)-(3-(3-Cyanophenyl)-1-Oxo-1- (Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3, 4-Tetrahydroisoquinoline-6- Sulfonamide And S-Adenosylmethionine Length = 264 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 648 CKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRN--------------CWVSCGDGSL 693
+ F GC C K+ C C C G D + C C V C
Sbjct: 55 TQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSD- 113
Query: 694 GEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHRE 753
C N + Q + K+ GWG + K ++ EY GE++ E
Sbjct: 114 ---------HCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSE 164
Query: 754 ADKRGKIYDRANSSFLFDLNDQ--------YVLDAYRKGDKLKFANHSSNPNCFAKVMLV 805
+R + +++S+++ + + +D G+ +F NHS PN + +
Sbjct: 165 VQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRI 224
Query: 806 AGD-HRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSK 847
++ +FA + I EEL YDY A K
Sbjct: 225 DSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDH 267
|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Length = 510 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 864 | |||
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 100.0 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 100.0 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 100.0 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 100.0 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 100.0 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 100.0 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 100.0 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 100.0 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 100.0 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 99.97 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.95 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 99.93 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 99.93 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 99.92 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 99.87 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 99.81 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 99.78 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 99.74 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 99.73 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 99.56 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 99.51 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.22 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.19 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.04 | |
| 2llk_A | 73 | Cyclin-D-binding MYB-like transcription factor 1; | 96.37 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 96.16 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 96.07 | |
| 2cqr_A | 73 | RSGI RUH-043, DNAJ homolog subfamily C member 1; m | 95.64 | |
| 2lr8_A | 70 | CAsp8-associated protein 2; structural genomics, n | 94.05 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 94.71 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 94.57 | |
| 2yqk_A | 63 | Arginine-glutamic acid dipeptide repeats protein; | 94.16 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 93.97 | |
| 2crg_A | 70 | Metastasis associated protein MTA3; transcription | 93.96 | |
| 2eqr_A | 61 | N-COR1, N-COR, nuclear receptor corepressor 1; SAN | 93.91 | |
| 2din_A | 66 | Cell division cycle 5-like protein; MYB_DNA-bindin | 93.74 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 93.65 | |
| 3sjm_A | 64 | Telomeric repeat-binding factor 2; human telomeric | 93.38 | |
| 2d9a_A | 60 | B-MYB, MYB-related protein B; DNA binding, structu | 93.25 | |
| 1guu_A | 52 | C-MYB, MYB proto-oncogene protein; transcription, | 93.19 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 93.04 | |
| 2cjj_A | 93 | Radialis; plant development, DNA-binding protein, | 92.38 | |
| 2cqq_A | 72 | RSGI RUH-037, DNAJ homolog subfamily C member 1; m | 92.38 | |
| 1ug2_A | 95 | 2610100B20RIK gene product; hypothetical protein, | 91.87 | |
| 1w0t_A | 53 | Telomeric repeat binding factor 1; telomere, DNA-b | 91.43 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 90.97 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 90.83 | |
| 1gvd_A | 52 | MYB proto-oncogene protein; transcription, transcr | 90.59 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 90.25 | |
| 2iw5_B | 235 | Protein corest, REST corepressor 1; oxidoreductase | 90.12 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 89.57 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 89.37 | |
| 4a69_C | 94 | Nuclear receptor corepressor 2; transcription, hyd | 88.86 | |
| 2dim_A | 70 | Cell division cycle 5-like protein; MYB_DNA-bindin | 87.74 | |
| 1ity_A | 69 | TRF1; helix-turn-helix, telomeres, DNA binding, MY | 87.21 | |
| 2ltp_A | 89 | Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s | 87.06 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 87.06 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 85.31 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 84.67 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 84.57 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 84.5 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 83.82 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 83.74 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 81.92 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 81.78 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 81.47 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 80.37 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 80.37 |
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=360.47 Aligned_cols=201 Identities=30% Similarity=0.556 Sum_probs=170.7
Q ss_pred CCcchhhcccCCcc--------CCcCCcCCCCCCCCCCCCcccCCCccccCCCCCCccccccccCcccCCCCccCCCccc
Q 002934 598 HPSIWKRIADGKNQ--------SCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPC 669 (864)
Q Consensus 598 ~p~~~kri~~~k~~--------~~~~y~PC~c~~~C~~~C~C~~~g~~Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC 669 (864)
.||.|++|+..+.. ...+...|+|... ++..|+|+.+|.||+.
T Consensus 16 ~pp~y~~i~~n~~~~~~~~~~~~~~~~~~C~C~~~-------------~~~~C~~~~~C~nr~~---------------- 66 (232)
T 3ooi_A 16 KPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKAT-------------DENPCGIDSECINRML---------------- 66 (232)
T ss_dssp SCCCCEECSSCEECTTCCCCCCCGGGSCCCSCCTT-------------SSSTTCTTSCCHHHHT----------------
T ss_pred CCCCceEeeccccccccccccCCcccCCcccccCC-------------CCCCCCCCCCCcCcCc----------------
Confidence 57778888764421 1123445555432 4667999999999975
Q ss_pred ccccCccCcccCcCcccCCCCCCCCCCCCCCCCCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEeccccc
Q 002934 670 FAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELI 749 (864)
Q Consensus 670 ~~a~rECdPd~C~~C~~sCg~g~l~~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVI 749 (864)
.+||+|..|. |+ ..|+|+.+|++...+|+|++++.+||||||+++|++|+||+||+||||
T Consensus 67 ---~~EC~~~~C~-c~----------------~~C~Nr~~q~~~~~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi 126 (232)
T 3ooi_A 67 ---LYECHPTVCP-AG----------------GRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELI 126 (232)
T ss_dssp ---TBCCCTTTCT-TG----------------GGCCCCHHHHTCCCCEEEEECSSSSEEEEESSCBCTTCEEEECCEEEE
T ss_pred ---eeEeCCCCCC-CC----------------CCcCCccccCCCCccEEEEEcCCceeEEEECceecCCceeeEeeeecc
Confidence 5888887775 32 379999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhhhhccc--CccccccCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEE
Q 002934 750 SHREADKRGKIYDRA--NSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFY 827 (864)
Q Consensus 750 s~~Ea~rR~k~yd~~--~~sYlf~L~~~~~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~~RI~~fA~RDI~aGEELTf 827 (864)
+..++++|...+... ...|+|.++.+++|||+.+||++|||||||+|||.++.|.+++.++|+|||+|||++||||||
T Consensus 127 ~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~ 206 (232)
T 3ooi_A 127 DEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTF 206 (232)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCEEEEETTEEEEEEEEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEE
T ss_pred CHHHHHHHHHHHhhcCCCceeeeecCcceEEeccccccccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEE
Confidence 999999997766543 357889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC---CCCCcccCCCCCCC
Q 002934 828 DYRYGP---DQAPAWARKPEGSK 847 (864)
Q Consensus 828 DYgy~~---d~~pcwC~~pe~~~ 847 (864)
||++.. ...+|+|+.++|+.
T Consensus 207 dY~~~~~~~~~~~C~CGs~~CrG 229 (232)
T 3ooi_A 207 NYNLECLGNGKTVCKCGAPNCSG 229 (232)
T ss_dssp CCTTCSTTCTTCBCCCCCTTCCS
T ss_pred ECCCCcCCCCCcEeECCCCcCcC
Confidence 999654 45899999999984
|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 864 | ||||
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 1e-36 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 8e-33 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 6e-27 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 2e-13 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 136 bits (344), Expect = 1e-36
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 630 PCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGR--ECDPDVCRNCWVS 687
P +G C GC + +R C C A GR V C
Sbjct: 62 PNFQSGCNCSSLGGCDLNNPSR---CECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSF 118
Query: 688 CGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGE 747
C +C N + + + + K+ GWG ++ Y GE
Sbjct: 119 CSCSM----------ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGE 168
Query: 748 LISHREADKRGKIYDRANSSFLFDL-----NDQYVLDAYRKGDKLKFANHSSNPNCFAKV 802
+I+ EA KR K YD ++LFDL +Y +DA GD +F NHS +PN
Sbjct: 169 VITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYS 228
Query: 803 MLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQAP 837
+ + + FA + I+ EEL +DY D +P
Sbjct: 229 AVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSP 267
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 864 | |||
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 100.0 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 100.0 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.92 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.87 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 98.0 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 96.15 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 95.63 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 95.6 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 95.51 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 94.93 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 94.66 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 93.97 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 93.67 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 93.46 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 91.9 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 91.75 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 91.42 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 91.32 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 90.27 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 88.12 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 88.04 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 87.92 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 87.52 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 81.11 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=5.4e-39 Score=337.88 Aligned_cols=137 Identities=31% Similarity=0.480 Sum_probs=128.5
Q ss_pred CCCCchhhhhcccCcEEEEecCCCCceeeeccccCCCCeeeEecccccCHHHHHHhhhhhcccCccccccCC-----CcE
Q 002934 702 GQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLN-----DQY 776 (864)
Q Consensus 702 ~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~KGefI~EY~GEVIs~~Ea~rR~k~yd~~~~sYlf~L~-----~~~ 776 (864)
..|.|+.+|++.+.+|+|++|+.+||||||.++|++|+||+||+||||+..++++|...|+....+|+|.+. ..+
T Consensus 123 ~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~~~~ 202 (269)
T d1mvha_ 123 MECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEY 202 (269)
T ss_dssp TTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSCSSSCE
T ss_pred CCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHhHhhcCCcchhheecccccccc
Confidence 379999999999999999999999999999999999999999999999999999999999988888988764 469
Q ss_pred EEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCCCCc
Q 002934 777 VLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQAPA 838 (864)
Q Consensus 777 ~IDAt~~GN~aRFINHSC~PNc~~~~~~V~G~----~RI~~fA~RDI~aGEELTfDYgy~~d~~pc 838 (864)
+|||+..||++|||||||+|||.++.|++++. ++|+|||+|||++||||||||||..+..|.
T Consensus 203 ~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~~P~ 268 (269)
T d1mvha_ 203 TVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPV 268 (269)
T ss_dssp EEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSSSCC
T ss_pred eeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcCCCCC
Confidence 99999999999999999999999999998753 789999999999999999999999887764
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
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| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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