Citrus Sinensis ID: 003021

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850------

MVIAQLQSSHPCVLASRFAPPARIHASSSSSSNRKLIPCNLWWFHSLAFKKHDYKINYAEKWEASSQSIEDKTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL

cEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccHHHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHccccEEEEcccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEEccccccccHHHHHccccccEEEEEEEccEEEEccccccccccccEEEEEEEccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccHHHHHHHHHcccccccEEEEEEccccHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHcccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHcccccEEEEcHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHccEEEEEEEEcccEEEcccccccccEEccccEEEEEEcccccccccc

cEEEEEcccccEEEEEcccccccEEcccccccccccccccHHHHHHcccccccEEEEccccEEEEccccccccccccccccccccccccEEEcccccccccHcHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHccHHHccEEEEEcccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHccccEEEHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEcccccccccHHHHHHHccccEEEEEEcccEEEEccccccEEccccEEEEEEccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHcccccccEEEEEEEEcccccHHHHHccccccccccccccccccEEEEEEccHHcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEccccccEEEcHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEcHHHHccccccccHHHHHHHHHHcccEEEEEEccccEEEccccccccEEEccccEEEEEEcccccccEEc

mviaqlqsshpcvlasrfapparihassssssnrklipcnlwwfhslafkkhdykiNYAEKweassqsiedktdssicmnvvdnssfkffrmdkkntpqgyQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPsmvwtlgatgspfacmsnslnkpmplkldvslpslQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVvfggflffkfrdeTQSLEDCLWEAWACLISssthlkqrTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIIlptkgdryevdtDAFLSVlalqpipkmnsvptivevsnpntCELLKSlsglkvepveNVASKLFVQCSRQKGLIKIYRHLLNYRKNIfnlwsfpnlagikyRQLRRGFQEAVVCGlyrngkiyfhpnddetlqptdkilfiapihgkkkprlassnvanrMNISQHLKVLENNSDSTSYAIELVNARLELIAkrpskpgskatdgnlgpkerilllgwrPDVVEMIEEYdnylgpgsvleilsdvplddrkrasnaighgklkNVQVFHkignplnfetLKDTIMNIQnsfkdgeelplSIVVIsdrewllgdpsradkQSAYSLLLAENICNKLGVKVQNLVAEIVDSklgkqiarnkpsltYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMkegenpsffelSERAHLRREVAIGYvkdnkkvinpvpkseplsltltdSLIVISelegeqpivl

mviaqlqsshpcvLASRFAPPARIhassssssnrklIPCNLWWFHSLAFKKHDYKINYAEKWEASsqsiedktdssicMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLIsssthlkqrtrVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAaankaraiiilptkgdryEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELiakrpskpgskatdgnlgpkeriLLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNaighgklknvqvFHKIGNPLNFETLKDTIMNIQNsfkdgeelpLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVdsklgkqiarnKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIgyvkdnkkvinpvpkseplsltltDSLIVISelegeqpivl

MVIAQLQSSHPCVLASRFAPPARIHAssssssNRKLIPCNLWWFHSLAFKKHDYKINYAEKWEASSQSIEDKTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATflvvlavvcfsfvvfggflffkfRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYEraaankaraiiiLPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL

**********************************KLIPCNLWWFHSLAFKKHDYKINYAEKWE************SICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHG*******************************SYAIELVNARLELI*******************ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPV*****LSLTLTDSLIVIS**********

**I****SSHPCVLASRFAP*********************WWFHSLAFKKHDYK**************************VDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREG*QMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKP***********************************************************KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVI****************SAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL

*********HPCVLASRFAPP************RKLIPCNLWWFHSLAFKKHDYKINYAEKW************SSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL

MVIAQLQSSHPCVLASRFAPPARIHASSSSSSNRKLIPCNLWWFHSLAFKKHDYKINYAEKWEASSQ*****TDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKP**A*************************YAIELVNARL*L*****************GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		856	2.2.26 [Sep-21-2011]
Q940Y9		817	Putative ion channel POLL	yes	no	0.855	0.895	0.708	0.0
Q8VZM7		813	Putative ion channel POLL	no	no	0.852	0.897	0.664	0.0
Q75LD5		893	Probable ion channel CAST	no	no	0.647	0.620	0.263	6e-53
Q5H8A6		853	Ion channel CASTOR OS=Lot	N/A	no	0.670	0.672	0.258	4e-52
Q5N941		965	Probable ion channel POLL	no	no	0.650	0.577	0.252	5e-49
Q9LTX4		824	Probable ion channel POLL	no	no	0.686	0.713	0.242	1e-47
Q6RHR6		882	Ion channel DMI1 OS=Medic	N/A	no	0.698	0.678	0.233	2e-46
Q4VY51		894	Probable ion channel SYM8	N/A	no	0.780	0.747	0.228	2e-45
Q5H8A5		917	Ion channel POLLUX OS=Lot	N/A	no	0.667	0.622	0.238	5e-45

>sp\|Q940Y9\|POLL2_ARATH Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1	Back alignment and function desciption

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/755 (70%), Positives = 616/755 (81%), Gaps = 23/755 (3%)

Query: 104 QLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLK 163
           +++IG +  Y +FR+ Q        KI Q+L P +V      G PFAC SNSL  P PLK
Sbjct: 84  KVVIGCIPLYAVFRIAQ--------KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLK 132

Query: 164 LDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQ 223
           LDVS PS QD+RW LAR LYLFN+QLE+N+ TFLV L + C SFV+ GG LFFKFR +  
Sbjct: 133 LDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDL- 191

Query: 224 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283
            LEDCLWEAWACLISSSTHLKQ+TR+ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KL
Sbjct: 192 PLEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKL 251

Query: 284 REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ 343
           REGAQMQVLE+DHII+CG+NSHL FILKQLN YHE +VRLGTATARKQR+LL+SD PRKQ
Sbjct: 252 REGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQ 311

Query: 344 MDKLAENIAKDLNHIDILSKS--LTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLS 401
           MDKLAE  +KD NHIDIL+KS  L LTKS+ERAAA+ ARAIIILPTKGDRYEVDTDAFLS
Sbjct: 312 MDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLS 371

Query: 402 VLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIY 461
           VLALQPI KM S+PTIVEVS+PNT +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIY
Sbjct: 372 VLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIY 431

Query: 462 RHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDK 521
           RHLLNY KN+FNL SFPNL G KYRQLR GFQE VVCGL R+GK+ FHPND+E L  TDK
Sbjct: 432 RHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDK 491

Query: 522 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSK 581
           +LFIAP++ KKK  L +            L+ +   +D+     E   +RL  I  RP K
Sbjct: 492 LLFIAPLNWKKKQLLYTD---------MKLENITVPTDTRKQVFEKKRSRLSKIIMRPRK 542

Query: 582 PGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI 641
             SK +D   GP E ILLLGWR DVV+MIEE+DNYLGPGS +EILSDV L+DR+R  ++I
Sbjct: 543 SLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSI 602

Query: 642 GHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRA 701
           G  K+KN+QV HK+GNPLN++TLK TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRA
Sbjct: 603 GSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRA 662

Query: 702 DKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 761
           DKQSAYSLLLAE+ICNKLGVKV NL +EIVDSKLGKQI   KPSLT+IAAEE+MSLVTAQ
Sbjct: 663 DKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQ 722

Query: 762 VVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN 821
           V EN+ELNEVWKDIL+A+GDEIYVKD+ LYMKEGENPSF ELSERA LRREVAIGY+K  
Sbjct: 723 VAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGG 782

Query: 822 KKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 856
           KK+INPVPK+EPLSL + DSLIVISELEG+QPI L
Sbjct: 783 KKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VZM7\|POLL1_ARATH Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1	Back alignment and function description

>sp\|Q75LD5\|CASTO_ORYSJ Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1	Back alignment and function description

>sp\|Q5H8A6\|CASTO_LOTJA Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1	Back alignment and function description

>sp\|Q5N941\|POLLU_ORYSJ Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1	Back alignment and function description

>sp\|Q9LTX4\|POLLU_ARATH Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1	Back alignment and function description

>sp\|Q6RHR6\|DMI1_MEDTR Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1	Back alignment and function description

>sp\|Q4VY51\|SYM8_PEA Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3	Back alignment and function description

>sp\|Q5H8A5\|POLLU_LOTJA Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		856
297737151		846	unnamed protein product [Vitis vinifera]	0.982	0.994	0.736	0.0
225432882		729	PREDICTED: ion channel CASTOR-like [Viti	0.848	0.995	0.795	0.0
356574781		850	PREDICTED: ion channel CASTOR-like [Glyc	0.954	0.961	0.716	0.0
255551967		787	conserved hypothetical protein [Ricinus	0.846	0.921	0.795	0.0
224111074		751	predicted protein [Populus trichocarpa]	0.859	0.980	0.766	0.0
449433285		907	PREDICTED: putative ion channel POLLUX-l	0.933	0.880	0.689	0.0
356533739		788	PREDICTED: probable ion channel CASTOR-l	0.911	0.989	0.709	0.0
449514845		902	PREDICTED: putative ion channel POLLUX-l	0.872	0.828	0.721	0.0
18422366		817	uncharacterized protein [Arabidopsis tha	0.855	0.895	0.708	0.0
297790330		808	hypothetical protein ARALYDRAFT_333107 [	0.883	0.935	0.659	0.0

>gi\|297737151\|emb\|CBI26352.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1289 bits (3336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/855 (73%), Positives = 725/855 (84%), Gaps = 14/855 (1%)

Query: 5   QLQSSHPCVLASRFAPPARIHASSSSSSNRKLIPCNLWWFHSLAFKKHDYKINYAEKWEA 64
           +LQSS P      +  P     +  SSS RK +PC+ WW  S A   + + ++   K +A
Sbjct: 3   RLQSSPP------WTSPQVSRLNRISSSKRKSVPCDCWWIQSSALPANKFLMHNRGKCKA 56

Query: 65  SSQSIEDKTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFI 124
           S Q   DK+ S      +D S+   F+ D KN  QGY A+LMIGS +SYFL RLTQ+   
Sbjct: 57  SLQRTLDKSYSP---TYLDGSNAGCFKEDLKNGSQGYDAKLMIGS-TSYFLLRLTQLYSA 112

Query: 125 NAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYL 184
           N  +K++Q+L  S+V T G    PFACMSNSLNKP PL+LDVSLPSLQD++WN +RL+YL
Sbjct: 113 NRLMKMVQNLL-SVVCTFGNGSLPFACMSNSLNKPTPLRLDVSLPSLQDIKWNFSRLIYL 171

Query: 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLK 244
           FN++LERNVAT  VVL V CFSFVV GG L FKFRD TQSLEDC WEAWACLISSSTHLK
Sbjct: 172 FNIRLERNVATSFVVLLVACFSFVVIGGLLLFKFRDNTQSLEDCFWEAWACLISSSTHLK 231

Query: 245 QRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNS 304
           QRT + RVIGF+LAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQV+E+DHI++CG+NS
Sbjct: 232 QRTHIGRVIGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVMEADHIVICGINS 291

Query: 305 HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKS 364
           HL+FILKQLNKYHEF+VRLGTATAR+QRILLLSDLPRKQMDKLA+NIAKDL+HID+L+KS
Sbjct: 292 HLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKLADNIAKDLSHIDVLTKS 351

Query: 365 ---LTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVS 421
              L+LTKS+ERAAA+KARAIIILP  GDRYEVDTDAFLSVLALQPI KM SVPTIVEV+
Sbjct: 352 CSSLSLTKSFERAAADKARAIIILPANGDRYEVDTDAFLSVLALQPISKMTSVPTIVEVT 411

Query: 422 NPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLA 481
           N  T ELLKS+SGLKVEPVENVASKL VQCSRQKGLIKIY+HLLNYRKN+FNL+SFPNLA
Sbjct: 412 NSQTAELLKSISGLKVEPVENVASKLLVQCSRQKGLIKIYKHLLNYRKNVFNLFSFPNLA 471

Query: 482 GIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNV 541
           GIKYRQLRRGF+ AVVCGLYRNGKIYFHPNDDE L+ TDK+LF+ P+ GK++P+LA  +V
Sbjct: 472 GIKYRQLRRGFEGAVVCGLYRNGKIYFHPNDDEVLRQTDKVLFVGPVPGKREPQLAYPDV 531

Query: 542 ANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG 601
               N  Q+L+VLE N  ++ YA++L+  R+E I KRP+KPGSKA+D +LGPKER+LL+G
Sbjct: 532 KEETNTIQNLEVLEKNGGASHYALDLIKMRVENIVKRPTKPGSKASDWSLGPKERVLLIG 591

Query: 602 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNF 661
           WR DVVEMIEEYDNYLGPGSVLEILSDVPLDDR RASN  GHGK+KN+QV H++GNP+N+
Sbjct: 592 WRQDVVEMIEEYDNYLGPGSVLEILSDVPLDDRNRASNFAGHGKVKNIQVSHRVGNPMNY 651

Query: 662 ETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGV 721
           +TL++TI+NI++SFK GE +PLSIVVISDRE LLGDPSRADK SAYSLLLAENICNKLGV
Sbjct: 652 DTLRETILNIRSSFKKGESVPLSIVVISDRECLLGDPSRADKHSAYSLLLAENICNKLGV 711

Query: 722 KVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGD 781
           KVQNLVAEIVDSKLGKQI R +PSLTYIAAEE+M LVTAQV EN+ELNEVWKDILNAEGD
Sbjct: 712 KVQNLVAEIVDSKLGKQITRIRPSLTYIAAEEVMGLVTAQVAENSELNEVWKDILNAEGD 771

Query: 782 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDS 841
           EIYVKDI LYMK GENPSF EL+ERAHLR+EVAIGYVK+NKKVINP+PKSEPLSL +TDS
Sbjct: 772 EIYVKDIRLYMKPGENPSFSELAERAHLRQEVAIGYVKNNKKVINPIPKSEPLSLEMTDS 831

Query: 842 LIVISELEGEQPIVL 856
           LIVISELEG QPIV+
Sbjct: 832 LIVISELEGAQPIVM 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225432882\|ref\|XP_002280086.1\| PREDICTED: ion channel CASTOR-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356574781\|ref\|XP_003555523.1\| PREDICTED: ion channel CASTOR-like [Glycine max]	Back alignment and taxonomy information

>gi\|255551967\|ref\|XP_002517028.1\| conserved hypothetical protein [Ricinus communis] gi\|223543663\|gb\|EEF45191.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224111074\|ref\|XP_002315738.1\| predicted protein [Populus trichocarpa] gi\|222864778\|gb\|EEF01909.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449433285\|ref\|XP_004134428.1\| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356533739\|ref\|XP_003535417.1\| PREDICTED: probable ion channel CASTOR-like [Glycine max]	Back alignment and taxonomy information

>gi\|449514845\|ref\|XP_004164496.1\| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18422366\|ref\|NP_568628.1\| uncharacterized protein [Arabidopsis thaliana] gi\|75163971\|sp\|Q940Y9.1\|POLL2_ARATH RecName: Full=Putative ion channel POLLUX-like 2 gi\|15450498\|gb\|AAK96542.1\| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi\|16974323\|gb\|AAL31146.1\| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi\|332007621\|gb\|AED95004.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297790330\|ref\|XP_002863063.1\| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata] gi\|297308871\|gb\|EFH39322.1\| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		856
TAIR\|locus:505006671		817	AT5G43745 [Arabidopsis thalian	0.835	0.875	0.691	2e-262
TAIR\|locus:2151276		813	AT5G02940 [Arabidopsis thalian	0.832	0.876	0.645	1.8e-243
TAIR\|locus:2158799		824	AT5G49960 [Arabidopsis thalian	0.342	0.355	0.237	3.5e-32
UNIPROTKB\|Q4VY51		894	SYM8 "Probable ion channel SYM	0.343	0.328	0.225	1.1e-30

TAIR\|locus:505006671 AT5G43745 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2525 (893.9 bits), Expect = 2.0e-262, P = 2.0e-262
 Identities = 505/730 (69%), Positives = 579/730 (79%)

Query:   129 KIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYLFNVQ 188
             KI Q+L P +V      G PFAC SNSL  P PLKLDVS PS QD+RW LAR LYLFN+Q
Sbjct:   101 KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLKLDVSFPSFQDIRWGLARFLYLFNIQ 157

Query:   189 LERNVATXXXXXXXXXXXXXXXXXXXXXXXRDETQSLEDCLWEAWACLISSSTHLKQRTR 248
             LE+N+ T                       R +   LEDCLWEAWACLISSSTHLKQ+TR
Sbjct:   158 LEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDLP-LEDCLWEAWACLISSSTHLKQKTR 216

Query:   249 VERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNSHLSF 308
             +ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KLREGAQMQVLE+DHII+CG+NSHL F
Sbjct:   217 IERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKLREGAQMQVLEADHIIICGINSHLPF 276

Query:   309 ILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKS--LT 366
             ILKQLN YHE +VRLGTATARKQR+LL+SD PRKQMDKLAE  +KD NHIDIL+KS  L 
Sbjct:   277 ILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQMDKLAEAYSKDFNHIDILTKSCSLN 336

Query:   367 LTKSYEXXXXXXXXXXXXLPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTC 426
             LTKS+E            LPTKGDRYEVDTDAFLSVLALQPI KM S+PTIVEVS+PNT 
Sbjct:   337 LTKSFERAAASMARAIIILPTKGDRYEVDTDAFLSVLALQPIQKMESIPTIVEVSSPNTY 396

Query:   427 ELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYR 486
             +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIYRHLLNY KN+FNL SFPNL G KYR
Sbjct:   397 DLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLVGTKYR 456

Query:   487 QLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMN 546
             QLR GFQE VVCGL R+GK+ FHPND+E L  TDK+LFIAP++ KKK  L +      M 
Sbjct:   457 QLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDKLLFIAPLNWKKKQLLYTD-----MK 511

Query:   547 ISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDV 606
             + +++ V    +D+     E   +RL  I  RP K  SK +D   GP E ILLLGWR DV
Sbjct:   512 L-ENITV---PTDTRKQVFEKKRSRLSKIIMRPRKSLSKGSDSVKGPTESILLLGWRGDV 567

Query:   607 VEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 666
             V+MIEE+DNYLGPGS +EILSDV L+DR+R  ++IG  K+KN+QV HK+GNPLN++TLK 
Sbjct:   568 VQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSIGSVKIKNIQVSHKVGNPLNYDTLKQ 627

Query:   667 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNL 726
             TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRADKQSAYSLLLAE+ICNKLGVKV NL
Sbjct:   628 TIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRADKQSAYSLLLAESICNKLGVKVHNL 687

Query:   727 VAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVK 786
              +EIVDSKLGKQI   KPSLT+IAAEE+MSLVTAQV EN+ELNEVWKDIL+A+GDEIYVK
Sbjct:   688 ASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVK 747

Query:   787 DISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVIS 846
             D+ LYMKEGENPSF ELSERA LRREVAIGY+K  KK+INPVPK+EPLSL + DSLIVIS
Sbjct:   748 DVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINPVPKNEPLSLEMDDSLIVIS 807

Query:   847 ELEGEQPIVL 856
             ELEG+QPI L
Sbjct:   808 ELEGDQPITL 817

GO:0005634 "nucleus" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR\|locus:2151276 AT5G02940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158799 AT5G49960 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4VY51 SYM8 "Probable ion channel SYM8" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940Y9	POLL2_ARATH	No assigned EC number	0.7086	0.8551	0.8959	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		856
pfam06241		208	pfam06241, DUF1012, Protein of unknown function (D	9e-88

>gnl\|CDD\|114933 pfam06241, DUF1012, Protein of unknown function (DUF1012)	Back alignment and domain information

 Score =  276 bits (708), Expect = 9e-88
 Identities = 139/215 (64%), Positives = 159/215 (73%), Gaps = 7/215 (3%)

Query: 379 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVE 438
           ARAIIILPTKGDRYEVDTDAFLSVLAL+PI KM S+PTIVEVS+PN  +LLKS+SGLKVE
Sbjct: 1   ARAIIILPTKGDRYEVDTDAFLSVLALEPIQKMESIPTIVEVSSPNMYDLLKSISGLKVE 60

Query: 439 PVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVC 498
           PVEN  SKLFVQCSRQK LIKIYRHLLNY KN+FNL SFPNL G+KYRQLR GFQE VVC
Sbjct: 61  PVENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVC 120

Query: 499 GLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNS 558
           G+ R+GK+ FHPNDDE L  TDK+LFIAP++ KKK  L +      + +       +   
Sbjct: 121 GILRDGKVNFHPNDDEELMETDKLLFIAPLNWKKKDFLYTDMKLENITV-------DETD 173

Query: 559 DSTSYAIELVNARLELIAKRPSKPGSKATDGNLGP 593
           D+     E   +RLE I  RP K  SK +D   GP
Sbjct: 174 DTRKQVFEEKKSRLEKIIMRPRKSLSKGSDSFKGP 208

Family of uncharacterized proteins found in both eukaryotes and bacteria. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		856
PRK09496		453	trkA potassium transporter peripheral membrane com	100.0
PF06241		206	DUF1012: Protein of unknown function (DUF1012); In	100.0
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.96
PRK10537		393	voltage-gated potassium channel; Provisional	99.95
KOG3193		1087	consensus K+ channel subunit [Inorganic ion transp	99.85
COG0569		225	TrkA K+ transport systems, NAD-binding component [	99.83
PRK09496		453	trkA potassium transporter peripheral membrane com	99.8
PRK10669		558	putative cation:proton antiport protein; Provision	99.63
PRK03659		601	glutathione-regulated potassium-efflux system prot	99.53
COG0569		225	TrkA K+ transport systems, NAD-binding component [	99.52
PF06241		206	DUF1012: Protein of unknown function (DUF1012); In	99.52
PRK03562		621	glutathione-regulated potassium-efflux system prot	99.48
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	99.45
PRK10537		393	voltage-gated potassium channel; Provisional	99.34
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	99.16
PRK10669		558	putative cation:proton antiport protein; Provision	99.04
PRK03659		601	glutathione-regulated potassium-efflux system prot	98.91
PRK03562		621	glutathione-regulated potassium-efflux system prot	98.84
COG1226		212	Kch Kef-type K+ transport systems, predicted NAD-b	98.57
PF07885		79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	98.55
COG0490		162	Putative regulatory, ligand-binding protein relate	98.49
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	98.41
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.12
PF02080		71	TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg	97.97
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	97.92
KOG3193		1087	consensus K+ channel subunit [Inorganic ion transp	97.85
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	97.84
COG1226		212	Kch Kef-type K+ transport systems, predicted NAD-b	97.64
KOG4404		350	consensus Tandem pore domain K+ channel TASK3/THIK	97.58
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	97.53
PF03493		101	BK_channel_a: Calcium-activated BK potassium chann	97.48
COG3273		204	Uncharacterized conserved protein [Function unknow	97.29
COG3400		471	Uncharacterized protein conserved in bacteria [Fun	97.28
COG0490		162	Putative regulatory, ligand-binding protein relate	96.95
KOG0498		727	consensus K+-channel ERG and related proteins, con	96.78
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	96.69
PF01007		336	IRK: Inward rectifier potassium channel; InterPro:	96.59
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	95.56
KOG0501		971	consensus K+-channel KCNQ [Inorganic ion transport	95.37
PRK05326		562	potassium/proton antiporter; Reviewed	95.33
PRK03818		552	putative transporter; Validated	95.11
KOG1418		433	consensus Tandem pore domain K+ channel [Inorganic	94.87
COG3400		471	Uncharacterized protein conserved in bacteria [Fun	94.75
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.68
PRK03818		552	putative transporter; Validated	94.62
PRK04972		558	putative transporter; Provisional	94.56
PF02080		71	TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg	94.41
KOG4404		350	consensus Tandem pore domain K+ channel TASK3/THIK	94.31
KOG3684		489	consensus Ca2+-activated K+ channel proteins (inte	93.41
PRK06719		157	precorrin-2 dehydrogenase; Validated	93.36
PRK04972		558	putative transporter; Provisional	93.05
KOG0500		536	consensus Cyclic nucleotide-gated cation channel C	92.57
PF00520		200	Ion_trans: Ion transport protein calcium channel s	92.31
KOG0499		815	consensus Cyclic nucleotide-gated cation channel C	92.28
PRK06719		157	precorrin-2 dehydrogenase; Validated	91.95
COG3273		204	Uncharacterized conserved protein [Function unknow	90.5
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	89.89
PRK06718		202	precorrin-2 dehydrogenase; Reviewed	89.83
KOG3827		400	consensus Inward rectifier K+ channel [Inorganic i	89.18
COG1748		389	LYS9 Saccharopine dehydrogenase and related protei	89.04
KOG1053		1258	consensus Glutamate-gated NMDA-type ion channel re	86.22
TIGR01470		205	cysG_Nterm siroheme synthase, N-terminal domain. T	83.79
KOG1418		433	consensus Tandem pore domain K+ channel [Inorganic	83.01
TIGR01470		205	cysG_Nterm siroheme synthase, N-terminal domain. T	82.45

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

Probab=100.00  E-value=4.7e-34  Score=329.74  Aligned_cols=425  Identities=16%  Similarity=0.215  Sum_probs=318.8

Q ss_pred             eEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcC
Q 003021          296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAA  375 (856)
Q Consensus       296 HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~  375 (856)
                      ||+|||+|..|..++++|...+.             .+++ .+.+++..+.+.+.     .+.+++.|++++.++|++++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~v-id~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~   62 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-------------DVTV-IDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAG   62 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-------------cEEE-EECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcC
Confidence            89999999999999999987654             4554 47777777766442     26889999999999999999


Q ss_pred             ccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCc---HHHH--HhcCCCeEEehHHHHHHHHHH
Q 003021          376 ANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLFVQ  450 (856)
Q Consensus       376 v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~---~~~l--~~~g~~~Vi~~~~i~~~lLaq  450 (856)
                      +++|+.+|++.++ |    +. ++.+++.+|+++  +..++|+++.++++   ..++  +.+|++.|+.|+.+++..|++
T Consensus        63 ~~~a~~vi~~~~~-~----~~-n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~  134 (453)
T PRK09496         63 AEDADLLIAVTDS-D----ET-NMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIAR  134 (453)
T ss_pred             CCcCCEEEEecCC-h----HH-HHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHH
Confidence            9999987766543 2    34 444556667766  77889999988877   3344  778999999999999999999


Q ss_pred             HHccCCHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHcc-CC-ceEEEEEEECCEEEECCCCCceecCCCEEE
Q 003021          451 CSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKIL  523 (856)
Q Consensus       451 ~~~~Pgl~~v~~~Ll~f~g-----~E~~v~~~p~l~G~tf~el~~~-~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~Li  523 (856)
                      .+..|+...+    +.+.+     .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+|+
T Consensus       135 ~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~l~  209 (453)
T PRK09496        135 LIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDEVY  209 (453)
T ss_pred             HhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCEEE
Confidence            9999997765    33333     3455556678999999999876 44 7999999999984 6899999999999999


Q ss_pred             EEecCCCCCCccccccccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEecc
Q 003021          524 FIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWR  603 (856)
Q Consensus       524 vIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~Gw~  603 (856)
                      ++++.++..+             +                    .    +.. ..+           ....+|++|||||
T Consensus       210 v~g~~~~l~~-------------~--------------------~----~~~-~~~-----------~~~~~~iiIiG~G  240 (453)
T PRK09496        210 FIGAREHIRA-------------V--------------------M----SEF-GRL-----------EKPVKRVMIVGGG  240 (453)
T ss_pred             EEeCHHHHHH-------------H--------------------H----HHh-Ccc-----------CCCCCEEEEECCC
Confidence            9999764321             0                    0    011 111           1246999999999


Q ss_pred             ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCccCceEEEEECCCCCHHHHHhccccccccccCCCCCCc
Q 003021          604 PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPL  683 (856)
Q Consensus       604 r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~~a~i~i~~a~~~d~~~~~  683 (856)
                      +.+..+++.|.+   .|..+++++..  +++.+.+.+    ...+  +.++.||+++.++|++++++  +   ++     
T Consensus       241 ~~g~~l~~~L~~---~~~~v~vid~~--~~~~~~~~~----~~~~--~~~i~gd~~~~~~L~~~~~~--~---a~-----  299 (453)
T PRK09496        241 NIGYYLAKLLEK---EGYSVKLIERD--PERAEELAE----ELPN--TLVLHGDGTDQELLEEEGID--E---AD-----  299 (453)
T ss_pred             HHHHHHHHHHHh---CCCeEEEEECC--HHHHHHHHH----HCCC--CeEEECCCCCHHHHHhcCCc--c---CC-----
Confidence            999999999974   47789999873  344444332    1223  35699999999999999887  2   34     


Q ss_pred             EEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEecccchhHhhhcCCCcceeehhhHHHHHHHHHh
Q 003021          684 SIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVV  763 (856)
Q Consensus       684 siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~ag~~~d~I~S~~iis~vlAq~a  763 (856)
                      .+++++++          |..|+++.+.+|.+    +.+  +||+++.++++.+.++.+|++ .+|.+..+.+..+++..
T Consensus       300 ~vi~~~~~----------~~~n~~~~~~~~~~----~~~--~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~~~  362 (453)
T PRK09496        300 AFIALTND----------DEANILSSLLAKRL----GAK--KVIALVNRPAYVDLVEGLGID-IAISPRQATASEILRHV  362 (453)
T ss_pred             EEEECCCC----------cHHHHHHHHHHHHh----CCC--eEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHHHh
Confidence            67777653          37899988888885    333  899999999999999998754 55566677788888888


Q ss_pred             hcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEE
Q 003021          764 ENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSL  842 (856)
Q Consensus       764 ~n~~l~~v~~eLl~-~eG~Ei~v~~~~~~~~~g~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~L  842 (856)
                      ..|.+..++....+ .+..|+.+.+.+.+    .+.++.++   ...+++.++|+.++++. ++|++   .+++++||.|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el---~l~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD~l  431 (453)
T PRK09496        363 RRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDL---KLPKGVLIGAIVRGGEV-IIPTG---DTVIEPGDHV  431 (453)
T ss_pred             hccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHc---CCCCCCEEEEEEECCEE-EcCCC---CcEECCCCEE
Confidence            88887766653221 12335555544444    34555555   33469999999998887 78864   3599999999


Q ss_pred             EEEecCCC
Q 003021          843 IVISELEG  850 (856)
Q Consensus       843 IVi~~~e~  850 (856)
                      +++++.+.
T Consensus       432 ~v~~~~~~  439 (453)
T PRK09496        432 IVFVLDKK  439 (453)
T ss_pred             EEEEcCcc
Confidence            99998876

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []	Back alignment and domain information

>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]	Back alignment and domain information

>COG3273 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK06719 precorrin-2 dehydrogenase; Validated	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK06719 precorrin-2 dehydrogenase; Validated	Back alignment and domain information

>COG3273 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK06718 precorrin-2 dehydrogenase; Reviewed	Back alignment and domain information

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain	Back alignment and domain information

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		856
1lnq_A		336	MTHK channels, potassium channel related protein;	2e-23
3naf_A		798	Calcium-activated potassium channel subunit alpha;	5e-17
3mt5_A		726	Potassium large conductance calcium-activated CHA	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2aef_A		234	Calcium-gated potassium channel MTHK; rossmann fol	3e-06
2pff_A		1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	3e-04

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336	Back alignment and structure

 Score =  101 bits (254), Expect = 2e-23
 Identities = 58/361 (16%), Positives = 122/361 (33%), Gaps = 49/361 (13%)

Query: 178 LARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLI 237
           +  ++ +    L R +      + ++  + +++G   F     E  S    L+  W   +
Sbjct: 1   MVLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE--SWTVSLY--WT-FV 55

Query: 238 SSST----HLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLE 293
           + +T         T +       L + GI  ++  +  + E   N  Q    G  + V +
Sbjct: 56  TIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG-LIDVAK 114

Query: 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK 353
           S H+++CG +      L++L               R   + +L++      D+       
Sbjct: 115 SRHVVICGWSESTLECLREL---------------RGSEVFVLAE------DENVRKKVL 153

Query: 354 DLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMN- 412
                + +    T     E+A    ARA+I+        E D++    +L ++   K++ 
Sbjct: 154 RSG-ANFVHGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIR---KIDE 203

Query: 413 SVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIF 472
           SV  I E       E L+     +V     ++ +L  +           + +L       
Sbjct: 204 SVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST-R 262

Query: 473 NLWSFP-----NLAGIKYRQLR-RGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIA 526
            +   P      L G+             ++ G+ R  ++   P  D + +  D IL I 
Sbjct: 263 RMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIG 322

Query: 527 P 527
            
Sbjct: 323 K 323

PyMOL of 1lnq

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798	Back alignment and structure

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234	Back alignment and structure

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		856
4gx0_A		565	TRKA domain protein; membrane protein, ION channel	100.0
3naf_A		798	Calcium-activated potassium channel subunit alpha;	100.0
4g65_A		461	TRK system potassium uptake protein TRKA; structur	100.0
3mt5_A		726	Potassium large conductance calcium-activated CHA	100.0
4hpf_A		722	Potassium channel subfamily U member 1; PH-gated,	100.0
1lnq_A		336	MTHK channels, potassium channel related protein;	100.0
2aef_A		234	Calcium-gated potassium channel MTHK; rossmann fol	99.89
3mt5_A		726	Potassium large conductance calcium-activated CHA	99.86
3naf_A		798	Calcium-activated potassium channel subunit alpha;	99.86
3l4b_C		218	TRKA K+ channel protien TM1088B; potassium channel	99.84
4gx0_A		565	TRKA domain protein; membrane protein, ION channel	99.81
4hpf_A		722	Potassium channel subfamily U member 1; PH-gated,	99.77
1lnq_A		336	MTHK channels, potassium channel related protein;	99.72
2aef_A		234	Calcium-gated potassium channel MTHK; rossmann fol	99.71
4g65_A		461	TRK system potassium uptake protein TRKA; structur	99.7
3fwz_A		140	Inner membrane protein YBAL; TRKA-N domain, E.coli	99.58
3l4b_C		218	TRKA K+ channel protien TM1088B; potassium channel	99.57
1id1_A		153	Putative potassium channel protein; RCK domain, E.	99.49
3l9w_A		413	Glutathione-regulated potassium-efflux system Pro	99.34
3llv_A		141	Exopolyphosphatase-related protein; NAD(P)-binding	99.3
3fwz_A		140	Inner membrane protein YBAL; TRKA-N domain, E.coli	99.21
1id1_A		153	Putative potassium channel protein; RCK domain, E.	99.17
3c85_A		183	Putative glutathione-regulated potassium-efflux S	99.15
1p7b_A		333	Integral membrane channel and cytosolic domains; t	99.01
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	98.97
1xl4_A		301	Inward rectifier potassium channel; integral membr	98.94
4h33_A		137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	98.93
1lss_A		140	TRK system potassium uptake protein TRKA homolog;	98.93
2a9h_A		155	Voltage-gated potassium channel; potassium channel	98.92
3l9w_A		413	Glutathione-regulated potassium-efflux system Pro	98.92
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	98.91
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	98.9
3llv_A		141	Exopolyphosphatase-related protein; NAD(P)-binding	98.88
2q67_A		114	Potassium channel protein; inverted teepee, helix	98.86
3ouf_A		97	Potassium channel protein; ION channel, membrane,	98.86
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	98.84
3ldc_A		82	Calcium-gated potassium channel MTHK; transmembran	98.8
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	98.77
2g1u_A		155	Hypothetical protein TM1088A; structural genomics,	98.77
2qks_A		321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.77
2hmt_A		144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.74
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	98.55
3c85_A		183	Putative glutathione-regulated potassium-efflux S	98.42
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	98.42
3um7_A		309	Potassium channel subfamily K member 4; potassium	98.41
2g1u_A		155	Hypothetical protein TM1088A; structural genomics,	98.37
3pjs_K		166	KCSA, voltage-gated potassium channel; ION channel	98.36
1vct_A		205	Hypothetical protein PH0236; helix rich, structura	98.33
3sya_A		340	G protein-activated inward rectifier potassium CH;	98.31
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	98.31
1lss_A		140	TRK system potassium uptake protein TRKA homolog;	98.31
3spc_A		343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.24
2hmt_A		144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.17
3jxo_A		86	TRKA-N domain protein; TRKA K+ channel component,	98.06
3um7_A		309	Potassium channel subfamily K member 4; potassium	98.03
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	97.99
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	97.22
1vct_A		205	Hypothetical protein PH0236; helix rich, structura	96.47
3jxo_A		86	TRKA-N domain protein; TRKA K+ channel component,	94.23
3dfz_A		223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.6
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	91.56
3ic5_A		118	Putative saccharopine dehydrogenase; structural ge	90.0

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-54  Score=512.77  Aligned_cols=530  Identities=15%  Similarity=0.203  Sum_probs=287.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh----hcCCCCCHHHHHHHHHHhhhcccccccc---CCcchhHH
Q 003021          181 LLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFK----FRDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVI  253 (856)
Q Consensus       181 l~y~fd~~~~~~~~~~~~~l~~~~~~iv~~g~~l~~~----~eg~~~s~~dalw~~~~~vt~st~g~gd---~T~~gRl~  253 (856)
                      ..|+|.+...++...++.+++++ ++++++++++|++    .|+..++|+||||  |+++|++|+||||   .|..||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y--~~~~t~tTvGygd~~p~~~~~~~~   81 (565)
T 4gx0_A            5 SAYFLRGRARQNLKVLLLYCAFL-LVMLLAYASIFRYLMWHLEGRAYSFMAGIY--WTITVMTTLGFGDITFESDAGYLF   81 (565)
T ss_dssp             ----------CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHH--HHHHHHTTCCCCSSCCCSHHHHHH
T ss_pred             cceeeechhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCchhhhhh--eeeeeeeeecCCCcCCCCccHHHH
Confidence            44556555555544443333333 3455555555544    5677799999999  7788889999998   45689999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHhcccccccCCCeEEEEcCCchHHHHHHHHHhcCcccccccccc
Q 003021          254 GFILAIWGILFYSRLLST-MTEQFRN-----NMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTAT  327 (856)
Q Consensus       254 ~v~l~l~Gi~~fa~li~~-it~~l~~-----~~~~lr~G~~~~v~~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~  327 (856)
                      +++++++|+++|++.++. +++.+.+     +++..+.++ .+...++|+||||||+.|..++++|.+.++         
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~hviI~G~g~~g~~la~~L~~~~~---------  151 (565)
T 4gx0_A           82 ASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIE-LPDDTRGHILIFGIDPITRTLIRKLESRNH---------  151 (565)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCC-CCTTCCSCEEEESCCHHHHHHHHHTTTTTC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccCCeEEEECCChHHHHHHHHHHHCCC---------
Confidence            999999999999988876 4443332     222212222 235679999999999999999999988665         


Q ss_pred             cCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHHHcCccccCeEEEecCCCCCCcchHHHHHHHHHcCC
Q 003021          328 ARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQP  407 (856)
Q Consensus       328 ~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~  407 (856)
                          ++|+ .|.+++.++.+.+.     .++.+++|+++++++|++|++++|+++++ +. +     |..++.+++++|+
T Consensus       152 ----~vvv-id~~~~~~~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~-~-----D~~n~~~~~~ar~  214 (565)
T 4gx0_A          152 ----LFVV-VTDNYDQALHLEEQ-----EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL-S-----DPDNANLCLTVRS  214 (565)
T ss_dssp             ----CEEE-EESCHHHHHHHHHS-----CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS-C-----HHHHHHHHHHHHT
T ss_pred             ----CEEE-EECCHHHHHHHHHh-----cCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC-C-----cHHHHHHHHHHHH
Confidence                4555 47888888776552     17899999999999999999999998776 32 2     4555667788888


Q ss_pred             CCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHHccCCHH-HHHHHHhcccCcEEEEecCCCCCCCCHH
Q 003021          408 IPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI-KIYRHLLNYRKNIFNLWSFPNLAGIKYR  486 (856)
Q Consensus       408 l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~~~Pgl~-~v~~~Ll~f~g~E~~v~~~p~l~G~tf~  486 (856)
                      ++   +.++||+++++++.+.++.+|+++|++++...++.|++.+..|+.. +++..--++.-.|+.+. .++++|++++
T Consensus       215 ~~---~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l~  290 (565)
T 4gx0_A          215 LC---QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTIG  290 (565)
T ss_dssp             TC---CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC---------------------------------
T ss_pred             hc---CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-CCccCCCCHH
Confidence            76   6899999999999999999999999999999999999999999885 33321111222677777 7899999999


Q ss_pred             HHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEecCCCCCCccccccccccccccchhhhhcccCCCCchHHH
Q 003021          487 QLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAI  565 (856)
Q Consensus       487 el~~~~~-~aivIGI~r~G~~~lnP~~d~vI~~gD~LivIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (856)
                      |+..+.+ ++.++||+|+|++. +|+++++|++||.|+++|+.++..+..                              
T Consensus       291 el~~~~~~~~~vi~i~r~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~------------------------------  339 (565)
T 4gx0_A          291 ESGIRQRTGLSIIGVWERGSLT-TPQRETVLTEQSLLVLAGTKSQLAALE------------------------------  339 (565)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCcchhcCCEEEEEEECCEEe-CCCCCcEeCCCCEEEEEeCHHHHHHHH------------------------------
Confidence            9976544 79999999999976 999999999999999999987654310                              


Q ss_pred             HHHHHHHhhhhcCCCCCCCCCCCCCCCCCCeEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCC
Q 003021          566 ELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGK  645 (856)
Q Consensus       566 e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~Gw~r~~~~li~eL~~~~~~gs~v~Ii~~~p~~er~~~l~~~~~~~  645 (856)
                             +.. +..           ... +|++|||||+.+..++++|.+   .|..+++++..  +++++.        
T Consensus       340 -------~~~-~~~-----------~~~-~~viIiG~G~~G~~la~~L~~---~g~~v~vid~d--~~~~~~--------  386 (565)
T 4gx0_A          340 -------YLI-GEA-----------PED-ELIFIIGHGRIGCAAAAFLDR---KPVPFILIDRQ--ESPVCN--------  386 (565)
T ss_dssp             --------------------------CC-CCEEEECCSHHHHHHHHHHHH---TTCCEEEEESS--CCSSCC--------
T ss_pred             -------HHh-cCC-----------CCC-CCEEEECCCHHHHHHHHHHHH---CCCCEEEEECC--hHHHhh--------
Confidence                   011 111           113 999999999999999999975   47779999974  344322        


Q ss_pred             ccCceEEEEECCCCCHHHHHhccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcce
Q 003021          646 LKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQN  725 (856)
Q Consensus       646 l~~~~V~~i~GD~td~~~L~~a~i~i~~a~~~d~~~~~siIILsd~d~~~~~~~~aDa~~l~t~L~~r~l~~~~g~~~~~  725 (856)
                      +.    ..++||++|.++|+++|++     ++|     .+|+++++          |+.|+++.+++|++.++     ++
T Consensus       387 ~~----~~i~gD~t~~~~L~~agi~-----~ad-----~vi~~~~~----------d~~ni~~~~~ak~l~~~-----~~  437 (565)
T 4gx0_A          387 DH----VVVYGDATVGQTLRQAGID-----RAS-----GIIVTTND----------DSTNIFLTLACRHLHSH-----IR  437 (565)
T ss_dssp             SS----CEEESCSSSSTHHHHHTTT-----SCS-----EEEECCSC----------HHHHHHHHHHHHHHCSS-----SE
T ss_pred             cC----CEEEeCCCCHHHHHhcCcc-----ccC-----EEEEECCC----------chHHHHHHHHHHHHCCC-----CE
Confidence            21    5699999999999999998     345     78887764          58999999999996655     69


Q ss_pred             EEEEEecccchhHhhhcCCCcceeehhhHHHHHHHHHhhcccHHHHHHHHHccCCCeEEEEec-cccccCCCCCCHHHHH
Q 003021          726 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDI-SLYMKEGENPSFFELS  804 (856)
Q Consensus       726 IIaEi~~~~~~~~l~~ag~~~d~I~S~~iis~vlAq~a~n~~l~~v~~eLl~~eG~Ei~v~~~-~~~~~~g~~~sF~~L~  804 (856)
                      ||+++.++++.+.++++|++ .+|.+..+.+..+++....+.+..+      .++.+++..+. +.+    .+.+..++.
T Consensus       438 iiar~~~~~~~~~l~~~G~d-~vi~p~~~~~~~i~~~~~~~~~~~~------~~~~~~~~v~~~s~~----~Gk~l~el~  506 (565)
T 4gx0_A          438 IVARANGEENVDQLYAAGAD-FVVSNASVGANILGNLLEHKESAFL------SEGMAVFRRPLPPAM----AGKTIAETR  506 (565)
T ss_dssp             EEEEESSTTSHHHHHHHTCS-EEEEHHHHHHHHHHHHHHCC---------------------------------------
T ss_pred             EEEEECCHHHHHHHHHcCCC-EEEccchHHHHHHHHHhcchhhhhh------hcCeEEEEEcCCCCc----CCCCHHHcc
Confidence            99999999999999999865 7777888889999998777654332      12334333332 233    344555553


Q ss_pred             HHHHhcCcEEEEEEEC--CeEEeCCCCCCCCccccCCCEEEEEecCCCCC
Q 003021          805 ERAHLRREVAIGYVKD--NKKVINPVPKSEPLSLTLTDSLIVISELEGEQ  852 (856)
Q Consensus       805 ~~a~~~g~ilIG~~~~--~~~iiNP~~k~~~~~l~~gD~LIVi~~~e~~~  852 (856)
                      -+. ..|..++|++|+  ++.++||.++   .++++||.|+++++.+.-+
T Consensus       507 l~~-~~~~~v~aI~R~~~~~~~~~p~~~---~~l~~GD~liv~g~~~~i~  552 (565)
T 4gx0_A          507 LRP-LTGCSIVAIEAPDRADILISPPPE---TILAEGARLILIGTSEQEK  552 (565)
T ss_dssp             --------------------------------------------------
T ss_pred             hhh-hcCCEEEEEEeCCCCceEECcCCC---CEECCCCEEEEEECHHHHH
Confidence            221 468999999998  8888889753   5999999999999887643

PyMOL of 4gx0

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}	Back alignment and structure

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}	Back alignment and structure

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A	Back alignment and structure

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}	Back alignment and structure

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A	Back alignment and structure

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A	Back alignment and structure

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}	Back alignment and structure

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}	Back alignment and structure

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*	Back alignment and structure

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}	Back alignment and structure

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A	Back alignment and structure

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A	Back alignment and structure

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}	Back alignment and structure

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}	Back alignment and structure

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}	Back alignment and structure

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9	Back alignment and structure

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*	Back alignment and structure

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}	Back alignment and structure

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}	Back alignment and structure

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9	Back alignment and structure

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*	Back alignment and structure

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A	Back alignment and structure

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*	Back alignment and structure

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}	Back alignment and structure

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*	Back alignment and structure

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A	Back alignment and structure

>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A	Back alignment and structure

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9	Back alignment and structure

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*	Back alignment and structure

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*	Back alignment and structure

>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*	Back alignment and structure

>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A	Back alignment and structure

>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}	Back alignment and structure

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}	Back alignment and structure

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		856
d1lnqa2		80	f.14.1.1 (A:19-98) Potassium channel-related prote	3e-04

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 197 LVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLIS-SSTHLKQRTRVERVIGF 255
              + ++  + +++G   F     E +S    L+  +  + +         T +      
Sbjct: 2   ATRILLLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTV 59

Query: 256 ILAIWGILFYSRLLSTMTE 274
            L + GI  ++  +  + E
Sbjct: 60  TLIVLGIGTFAVAVERLLE 78

PyMOL of d1lnqa2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		856
d1id1a_		153	Rck domain from putative potassium channel Kch {Es	99.75
d2fy8a1		129	Potassium channel-related protein MthK {Archaeon M	99.68
d1id1a_		153	Rck domain from putative potassium channel Kch {Es	99.6
d2fy8a1		129	Potassium channel-related protein MthK {Archaeon M	99.56
d1lssa_		132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	99.54
d2hmva1		134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	99.47
d1lssa_		132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	99.29
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	99.15
d2hmva1		134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	99.09
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	98.67
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	98.63
d2fy8a2		92	Potassium channel-related protein MthK, C-terminal	98.45
d1lnqa2		80	Potassium channel-related protein MthK {Archaeon M	98.44
d1vcta2		94	Hypothetical protein PH0236, C-terminal domain {Py	98.28
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	97.35
d2fy8a2		92	Potassium channel-related protein MthK, C-terminal	96.48
d1vcta2		94	Hypothetical protein PH0236, C-terminal domain {Py	95.93
d1e5qa1		182	Saccharopine reductase {Rice blast fungus (Magnapo	90.46
d1hdoa_		205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.5
d1pjqa1		113	Siroheme synthase CysG, domain 1 {Salmonella typhi	86.35
d2p7tc1		34	Potassium channel protein {Streptomyces lividans [	86.26
d1gpja2		159	Glutamyl tRNA-reductase middle domain {Archaeon Me	84.6
d1hdoa_		205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.55
d1pjqa1		113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.62
d1v8ba1		163	S-adenosylhomocystein hydrolase {Plasmodium falcip	81.04
d1e5qa1		182	Saccharopine reductase {Rice blast fungus (Magnapo	81.0

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.1e-18  Score=164.57  Aligned_cols=143  Identities=19%  Similarity=0.253  Sum_probs=117.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHhcCcccccccccccCcceEEEEeCCChhHHHHHHHhhccccCCceEEEecCCCHHHHH
Q 003021          293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSLTLTKSYE  372 (856)
Q Consensus       293 ~~~HiII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~VVVL~d~~~~~~e~l~~~~~~d~~~~~Vi~~~~~~~e~L~  372 (856)
                      .+|||||||||+.|..++++|.+.+.             .++++ +.+++......+..  ...++.+++|+++++++|+
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~-------------~v~vI-d~d~~~~~~~~~~~--~~~~~~vi~Gd~~d~~~L~   65 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQ-------------NVTVI-SNLPEDDIKQLEQR--LGDNADVIPGDSNDSSVLK   65 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-------------CEEEE-ECCCHHHHHHHHHH--HCTTCEEEESCTTSHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-------------CEEEE-eccchhHHHHHHHh--hcCCcEEEEccCcchHHHH
Confidence            48999999999999999999988655             45554 44443322222221  1138899999999999999


Q ss_pred             HcCccccCeEEEecCCCCCCcchHHHHHHHHHcCCCCCCCCCCEEEEEeCcCcHHHHHhcCCCeEEehHHHHHHHHHHHH
Q 003021          373 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCS  452 (856)
Q Consensus       373 rA~v~~A~aVIIl~~~~D~~~~Da~~l~~vLAlr~l~~~~~~~iIaev~d~~~~~~l~~~g~~~Vi~~~~i~~~lLaq~~  452 (856)
                      ++++++|+++|+++++      |..++.+++++|+++  |..++||++.++++.+.++.+|++.|++|+.++++.|++.+
T Consensus        66 ~a~i~~a~~vi~~~~~------d~~n~~~~~~~r~~~--~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~~l  137 (153)
T d1id1a_          66 KAGIDRCRAILALSDN------DADNAFVVLSAKDMS--SDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVL  137 (153)
T ss_dssp             HHTTTTCSEEEECSSC------HHHHHHHHHHHHHHT--SSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEcccc------HHHHHHHHHHHHHhC--CCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHHHh
Confidence            9999999988776543      677788889999987  89999999999999999999999999999999999999999


Q ss_pred             ccCCHHH
Q 003021          453 RQKGLIK  459 (856)
Q Consensus       453 ~~Pgl~~  459 (856)
                      ..|++..
T Consensus       138 ~~~~v~~  144 (153)
T d1id1a_         138 NGEEINN  144 (153)
T ss_dssp             TTCCCCH
T ss_pred             CcCCCCH
Confidence            9998854

PyMOL of d1id1a_

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}	Back information, alignment and structure

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}	Back information, alignment and structure

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}	Back information, alignment and structure

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}	Back information, alignment and structure

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}	Back information, alignment and structure