Citrus Sinensis ID: 003073
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | 2.2.26 [Sep-21-2011] | |||||||
| Q941L0 | 1065 | Cellulose synthase A cata | yes | no | 0.967 | 0.771 | 0.842 | 0.0 | |
| Q84ZN6 | 1081 | Probable cellulose syntha | yes | no | 0.961 | 0.755 | 0.791 | 0.0 | |
| Q84M43 | 1073 | Probable cellulose syntha | no | no | 0.956 | 0.757 | 0.780 | 0.0 | |
| A2XN66 | 1073 | Probable cellulose syntha | N/A | no | 0.956 | 0.757 | 0.780 | 0.0 | |
| O48946 | 1081 | Cellulose synthase A cata | no | no | 0.958 | 0.753 | 0.672 | 0.0 | |
| Q9SKJ5 | 1065 | Probable cellulose syntha | no | no | 0.950 | 0.758 | 0.651 | 0.0 | |
| Q6AT26 | 1076 | Probable cellulose syntha | no | no | 0.94 | 0.742 | 0.682 | 0.0 | |
| A2Y0X2 | 1076 | Probable cellulose syntha | N/A | no | 0.94 | 0.742 | 0.682 | 0.0 | |
| Q69V23 | 1093 | Probable cellulose syntha | no | no | 0.962 | 0.748 | 0.656 | 0.0 | |
| Q851L8 | 1092 | Probable cellulose syntha | no | no | 0.954 | 0.742 | 0.639 | 0.0 |
| >sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1441 bits (3731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/836 (84%), Positives = 758/836 (90%), Gaps = 14/836 (1%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGET K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAI GD++EDG AD+G +FNY QK+KISERML WH+ G
Sbjct: 61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GE+ P+YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
QSP+ R+VDPV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227
Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIAL 300
D+L D++LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL +FL+YRI NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287
Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347
Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407
Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467
Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527
Query: 541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct: 528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587
Query: 601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 660
DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L G
Sbjct: 588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647
Query: 661 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
GSRKKNSK+ K+ SDKKKS +H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct: 648 GSRKKNSKAKKE-SDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706
Query: 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDI 780
FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDI
Sbjct: 707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDI 766
Query: 781 LTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 836
LTGFKMHARGWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI
Sbjct: 767 LTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 822
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Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6AT26|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2Y0X2|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| 255582781 | 1085 | Cellulose synthase A catalytic subunit 6 | 0.983 | 0.770 | 0.912 | 0.0 | |
| 183211890 | 1084 | cellulose synthase [Betula platyphylla] | 0.983 | 0.771 | 0.908 | 0.0 | |
| 429326428 | 1079 | cellulose synthase [Populus tomentosa] | 0.983 | 0.774 | 0.917 | 0.0 | |
| 385718955 | 1081 | cellulose synthase 3 [Paeonia lactiflora | 0.981 | 0.771 | 0.892 | 0.0 | |
| 162955786 | 1080 | cellulose synthase [Eucalyptus grandis] | 0.981 | 0.772 | 0.905 | 0.0 | |
| 162955780 | 1080 | cellulose synthase [Eucalyptus grandis] | 0.981 | 0.772 | 0.905 | 0.0 | |
| 307557871 | 1075 | cellulose synthase [Leucaena leucocephal | 0.975 | 0.771 | 0.897 | 0.0 | |
| 340343837 | 1080 | cellulose synthase A [Eucalyptus camaldu | 0.981 | 0.772 | 0.905 | 0.0 | |
| 347953823 | 1067 | cellulose synthase catalytic subunit [Go | 0.969 | 0.772 | 0.892 | 0.0 | |
| 347953867 | 1067 | cellulose synthase catalytic subunit [Go | 0.969 | 0.772 | 0.892 | 0.0 |
| >gi|255582781|ref|XP_002532166.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi|223528153|gb|EEF30219.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1551 bits (4015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/842 (91%), Positives = 796/842 (94%), Gaps = 6/842 (0%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGETG K +K+VG QVCQIC DNVG T+DG+PFVAC+VCAFPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETGAKPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAILGDREED DADDGA DFNY +E QNQ+QKI+ERMLSW M YG
Sbjct: 61 SCPQCKTRYKRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYG 120
Query: 121 QGED-ASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIH---YS 176
+GED APKYD EVSHNHIP LT G EVSGELSAASPEH+SMASPGVG KRIH Y+
Sbjct: 121 RGEDDVGAPKYDKEVSHNHIPLLTNGHEVSGELSAASPEHVSMASPGVGGAKRIHTLPYA 180
Query: 177 GDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQE--KNVVPMSTGQATSERGGG 234
DIN SP+ RVVDPVREFGSPGLGNVAWKERVDGWKMKQ+ KNV+PMS+GQA SERG G
Sbjct: 181 ADINASPNPRVVDPVREFGSPGLGNVAWKERVDGWKMKQDPVKNVIPMSSGQAPSERGVG 240
Query: 235 DIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPV 294
DIDASTDVLVDDSLLNDEARQPLSRKV IPSSRINPYRMVI LRLIIL IFL+YRI NPV
Sbjct: 241 DIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPV 300
Query: 295 HNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIF 354
NA ALWLISVICEIWFAISWI DQFPKWLP+NRETYLDRLSLRY+REGEPSQLAAVDIF
Sbjct: 301 TNAYALWLISVICEIWFAISWILDQFPKWLPINRETYLDRLSLRYDREGEPSQLAAVDIF 360
Query: 355 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 414
VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP
Sbjct: 361 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 420
Query: 415 FCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIP 474
FCKKYNIEPRAPEWYF QKIDYLKDKVQ SFVK+RRAMKREYEEFK+ INGLVAKAQKIP
Sbjct: 421 FCKKYNIEPRAPEWYFTQKIDYLKDKVQTSFVKERRAMKREYEEFKVHINGLVAKAQKIP 480
Query: 475 EEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKK 534
EEGW+MQDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKK
Sbjct: 481 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKK 540
Query: 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594
AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRF
Sbjct: 541 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRF 600
Query: 595 DGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGL 654
DGIDRNDRYANRNTVFFDINLRGLDG+QGPVYVGTGCVFNRTALYGYEPPLKPKH+KPGL
Sbjct: 601 DGIDRNDRYANRNTVFFDINLRGLDGVQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGL 660
Query: 655 LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 714
LSSL GGSRKKNSKS+KKG DKKKS KHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ
Sbjct: 661 LSSLCGGSRKKNSKSNKKGLDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 720
Query: 715 MSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYG 774
MSLEKRFGQSAVFVASTLMENGGVPQSAT ETLLKEAIHVISCGYEDKT+WGSEIGWIYG
Sbjct: 721 MSLEKRFGQSAVFVASTLMENGGVPQSATSETLLKEAIHVISCGYEDKTDWGSEIGWIYG 780
Query: 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC 834
SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC
Sbjct: 781 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHC 840
Query: 835 PI 836
PI
Sbjct: 841 PI 842
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|183211890|gb|ACC59195.1| cellulose synthase [Betula platyphylla] | Back alignment and taxonomy information |
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| >gi|429326428|gb|AFZ78554.1| cellulose synthase [Populus tomentosa] | Back alignment and taxonomy information |
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| >gi|385718955|gb|AFI71894.1| cellulose synthase 3 [Paeonia lactiflora] | Back alignment and taxonomy information |
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| >gi|162955786|gb|ABY25277.1| cellulose synthase [Eucalyptus grandis] | Back alignment and taxonomy information |
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| >gi|162955780|gb|ABY25274.1| cellulose synthase [Eucalyptus grandis] | Back alignment and taxonomy information |
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| >gi|307557871|gb|ACU87559.2| cellulose synthase [Leucaena leucocephala] | Back alignment and taxonomy information |
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| >gi|340343837|gb|AEK31218.1| cellulose synthase A [Eucalyptus camaldulensis] | Back alignment and taxonomy information |
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| >gi|347953823|gb|AEP33537.1| cellulose synthase catalytic subunit [Gossypium laxum] | Back alignment and taxonomy information |
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| >gi|347953867|gb|AEP33559.1| cellulose synthase catalytic subunit [Gossypium trilobum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| TAIR|locus:2156789 | 1065 | CEV1 "CONSTITUTIVE EXPRESSION | 0.967 | 0.771 | 0.800 | 0.0 | |
| TAIR|locus:2127776 | 1081 | CESA1 "cellulose synthase 1" [ | 0.955 | 0.751 | 0.647 | 4.9e-298 | |
| TAIR|locus:2040080 | 1065 | CESA10 "cellulose synthase 10" | 0.805 | 0.643 | 0.674 | 4e-285 | |
| TAIR|locus:2178935 | 1026 | IRX3 "IRREGULAR XYLEM 3" [Arab | 0.477 | 0.395 | 0.789 | 5.4e-280 | |
| TAIR|locus:2178193 | 1069 | CESA5 "cellulose synthase 5" [ | 0.590 | 0.469 | 0.666 | 1.2e-277 | |
| TAIR|locus:2172457 | 1049 | CESA4 "cellulose synthase A4" | 0.595 | 0.482 | 0.652 | 4.2e-275 | |
| TAIR|locus:2136308 | 1084 | CESA2 "cellulose synthase A2" | 0.952 | 0.747 | 0.605 | 2.4e-273 | |
| TAIR|locus:2176090 | 1084 | CESA6 "cellulose synthase 6" [ | 0.952 | 0.747 | 0.606 | 4.7e-270 | |
| TAIR|locus:2052576 | 1088 | CESA9 "cellulose synthase A9" | 0.952 | 0.744 | 0.590 | 3.1e-267 | |
| TAIR|locus:2124167 | 985 | IRX1 "IRREGULAR XYLEM 1" [Arab | 0.738 | 0.637 | 0.673 | 1.3e-250 |
| TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3525 (1245.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 669/836 (80%), Positives = 713/836 (85%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGET K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILXXXXXXXXXXXXXXXFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKTRYK+ KGSPAI FNY QK+KISERML WH+ G
Sbjct: 61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GE+ P+YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
QSP+ R+VDPV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227
Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVXXXXXXXXXXXXXXXXKNPVHNAIAL 300
D+L D++LLNDEARQPLSRKV IPSSRINPYRMV NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287
Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347
Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407
Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467
Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527
Query: 541 LVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600
LVRVSAVLTNGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+N
Sbjct: 528 LVRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKN 587
Query: 601 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFX 660
DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L
Sbjct: 588 DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCG 647
Query: 661 XXXXXXXXXXXXXXXXXXXXXHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR 720
H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKR
Sbjct: 648 GSRKKNSKAKKESDKKKSGR-HTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKR 706
Query: 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDI 780
FGQSAVFVASTLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDI
Sbjct: 707 FGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDI 766
Query: 781 LTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 836
LTGFKMHARGWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI
Sbjct: 767 LTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 822
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| TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2XN66 | CESA2_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.7808 | 0.9564 | 0.7576 | N/A | no |
| Q941L0 | CESA3_ARATH | 2, ., 4, ., 1, ., 1, 2 | 0.8421 | 0.9670 | 0.7718 | yes | no |
| Q84ZN6 | CESA8_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.7914 | 0.9611 | 0.7557 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.976 |
| 4th Layer | 2.4.1.12 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | estExt_Genewise1_v1.C_LG_I1792 | cellulose synthase (EC-2.4.1.12) (1081 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | ACT9 | • | 0.686 | ||||||||
 | MYB103 | • | 0.510 | ||||||||
 | grail3.0064002701 | • | 0.510 | ||||||||
 | lac1 | • | 0.510 | ||||||||
 | lac90 | • | 0.510 | ||||||||
 | lac110 | • | 0.510 | ||||||||
 | lac2 | • | 0.510 | ||||||||
 | 4CL1 | • | 0.510 | ||||||||
 | CCR | • | 0.508 | ||||||||
 | PAL2 | • | 0.507 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 850 | |||
| PLN02638 | 1079 | PLN02638, PLN02638, cellulose synthase A (UDP-form | 0.0 | |
| PLN02400 | 1085 | PLN02400, PLN02400, cellulose synthase | 0.0 | |
| PLN02436 | 1094 | PLN02436, PLN02436, cellulose synthase A | 0.0 | |
| PLN02189 | 1040 | PLN02189, PLN02189, cellulose synthase | 0.0 | |
| PLN02915 | 1044 | PLN02915, PLN02915, cellulose synthase A [UDP-form | 0.0 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 0.0 | |
| pfam03552 | 716 | pfam03552, Cellulose_synt, Cellulose synthase | 0.0 | |
| PLN02248 | 1135 | PLN02248, PLN02248, cellulose synthase-like protei | 0.0 | |
| PLN02190 | 756 | PLN02190, PLN02190, cellulose synthase-like protei | 1e-124 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 6e-97 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 2e-32 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 2e-14 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 4e-13 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 4e-10 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 4e-08 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 4e-08 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 6e-08 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 6e-08 | |
| cd06423 | 180 | cd06423, CESA_like, CESA_like is the cellulose syn | 1e-05 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 2e-05 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 5e-05 | |
| pfam13632 | 194 | pfam13632, Glyco_trans_2_3, Glycosyl transferase f | 1e-04 | |
| pfam14446 | 55 | pfam14446, Prok-RING_1, Prokaryotic RING finger fa | 4e-04 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 0.001 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 0.002 | |
| PLN02248 | 1135 | PLN02248, PLN02248, cellulose synthase-like protei | 0.004 |
| >gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Score = 1776 bits (4600), Expect = 0.0
Identities = 766/837 (91%), Positives = 797/837 (95%), Gaps = 2/837 (0%)
Query: 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
MESEGETG K +K+ GGQVCQICGDNVGKTVDG PFVACDVCAFPVCRPCYEYERKDGNQ
Sbjct: 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQ 60
Query: 61 SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
SCPQCKT+YK+HKGSPAILGD EEDGDADDGASDFNY S NQ+QKQKI+ERMLSW M G
Sbjct: 61 SCPQCKTKYKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSG 120
Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
+GED AP YD EVSHNHIP LT GQ VSGELSAASPE LSMASPG G GKRI Y+ D+N
Sbjct: 121 RGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAG-GKRIPYASDVN 179
Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSE-RGGGDIDAS 239
QSP+IRVVDPVREFGSPGLGNVAWKERVDGWKMKQ+KN +PMSTG A SE RGGGDIDAS
Sbjct: 180 QSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239
Query: 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIA 299
TDVL+DD+LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL IFL+YRI NPV NA A
Sbjct: 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYA 299
Query: 300 LWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVD 359
LWLISVICEIWFA+SWI DQFPKWLPVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVD
Sbjct: 300 LWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVD 359
Query: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY
Sbjct: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
Query: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479
NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFK+RINGLVAKAQK+PEEGW+
Sbjct: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479
Query: 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
MQDGTPWPGNNTRDHPGMIQVFLG +GGLD EGNELPRLVYVSREKRPGFQHHKKAGAMN
Sbjct: 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
Query: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 599
ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGIDR
Sbjct: 540 ALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDR 599
Query: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLF 659
NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+KPKH+KPG LSSL
Sbjct: 600 NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLC 659
Query: 660 GGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719
GGSRKK+SKSSKKGSDKKKS KHVDPTVP+F+LEDIEEGVEGAGFDDEKSLLMSQMSLEK
Sbjct: 660 GGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719
Query: 720 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTED 779
RFGQSAVFVASTLMENGGVPQSAT E+LLKEAIHVISCGYEDKT+WGSEIGWIYGSVTED
Sbjct: 720 RFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTED 779
Query: 780 ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 836
ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI
Sbjct: 780 ILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPI 836
|
Length = 1079 |
| >gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >gnl|CDD|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| PLN02638 | 1079 | cellulose synthase A (UDP-forming), catalytic subu | 100.0 | |
| PLN02400 | 1085 | cellulose synthase | 100.0 | |
| PLN02436 | 1094 | cellulose synthase A | 100.0 | |
| PLN02915 | 1044 | cellulose synthase A [UDP-forming], catalytic subu | 100.0 | |
| PLN02189 | 1040 | cellulose synthase | 100.0 | |
| PLN02195 | 977 | cellulose synthase A | 100.0 | |
| PLN02248 | 1135 | cellulose synthase-like protein | 100.0 | |
| PF03552 | 720 | Cellulose_synt: Cellulose synthase; InterPro: IPR0 | 100.0 | |
| PLN02190 | 756 | cellulose synthase-like protein | 100.0 | |
| PLN02893 | 734 | Cellulose synthase-like protein | 100.0 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 100.0 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 100.0 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 100.0 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 100.0 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 100.0 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 100.0 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 99.97 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 99.96 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 99.96 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 99.96 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 99.95 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 99.95 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 99.95 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 99.95 | |
| PRK11234 | 727 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.94 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 99.93 | |
| cd04190 | 244 | Chitin_synth_C C-terminal domain of Chitin Synthas | 99.91 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 99.9 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 99.9 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 99.9 | |
| PRK15489 | 703 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.89 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 99.86 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 99.85 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 99.81 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 99.77 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 99.72 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 99.68 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 99.64 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 99.62 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 99.59 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 99.47 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 99.47 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 99.47 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 99.46 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 99.43 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 99.43 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 99.42 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 99.38 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 99.37 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 99.35 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 99.34 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 99.31 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 99.3 | |
| COG2943 | 736 | MdoH Membrane glycosyltransferase [Cell envelope b | 99.26 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 99.24 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 99.24 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 99.2 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 99.13 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 99.1 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 99.09 | |
| PF03142 | 527 | Chitin_synth_2: Chitin synthase; InterPro: IPR0048 | 99.06 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 99.0 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 98.98 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 98.98 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 98.96 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 98.93 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 98.79 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 98.77 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 98.73 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 98.57 | |
| COG0463 | 291 | WcaA Glycosyltransferases involved in cell wall bi | 98.36 | |
| KOG2571 | 862 | consensus Chitin synthase/hyaluronan synthase (gly | 98.3 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 98.21 | |
| KOG2547 | 431 | consensus Ceramide glucosyltransferase [Lipid tran | 97.79 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 97.15 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 96.84 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 96.43 | |
| KOG2977 | 323 | consensus Glycosyltransferase [General function pr | 96.21 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 95.67 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 94.34 | |
| KOG3737 | 603 | consensus Predicted polypeptide N-acetylgalactosam | 90.72 | |
| KOG3736 | 578 | consensus Polypeptide N-acetylgalactosaminyltransf | 89.47 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 88.54 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 86.3 |
| >PLN02638 cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-257 Score=2225.67 Aligned_cols=847 Identities=90% Similarity=1.443 Sum_probs=775.3
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccC
Q 003073 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (850)
Q Consensus 1 ~~~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~g 80 (850)
||+.|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 003073 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (850)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (850)
|||||+|+||+||||+|..+++...++++|+|++|+|++|++.|.++..++++.+++++|+|++||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999999654555567889999999999999988777777877556788999999988999997776666
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCC-CCCCC
Q 003073 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (850)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (850)
.++++.+ .||||||+|+.+.+++.|.|||+||+++||||||+||+|||+||+||+|++.++.+.....+++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 5655554 689999999877778999999999999999999999999999999999887777766544565543 33321
Q ss_pred CCcccCCcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhh
Q 003073 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (850)
Q Consensus 240 ~~~~~~~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q 319 (850)
.+.+++|+++++++++||+||+++++++|++||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22236789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003073 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (850)
Q Consensus 320 ~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~ 399 (850)
++||+||+|.||+|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 003073 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (850)
Q Consensus 400 e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~ 479 (850)
++|.||++|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecC
Q 003073 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (850)
Q Consensus 480 m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDA 559 (850)
|+|||+||||+++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+|||||||+||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhc
Q 003073 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (850)
Q Consensus 560 D~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALy 639 (850)
|||+|||++||++||||+||+.|+++|||||||||+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC-ccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHH
Q 003073 640 GYEPPLKPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (850)
Q Consensus 640 G~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (850)
|++||...+.....++| |||++ +++.++.+.+.+.++...++.+.+.+++++++++++.++..++++++++++++.|+
T Consensus 640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998764322222223 45555 33322222222222222344556678888999998888877788888999999999
Q ss_pred HhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCC
Q 003073 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (850)
Q Consensus 719 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p 798 (850)
++||+|++|++|+++++||.+...+++++|+||+||+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 799 ~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
.+++|.|+||+|+.+++.||+|||.|++||+++++||+|+| .+.|||+|++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~ 854 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVN 854 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999964 3679999974
|
|
| >PLN02400 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02436 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02915 cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >PLN02189 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02195 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02248 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals | Back alignment and domain information |
|---|
| >PLN02190 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PLN02893 Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
| >cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin | Back alignment and domain information |
|---|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
| >PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
| >COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
| >KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG2977 consensus Glycosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 850 | ||||
| 1weo_A | 93 | Solution Structure Of Ring-Finger In The Catalytic | 2e-24 | ||
| 4hg6_A | 802 | Structure Of A Cellulose Synthase - Cellulose Trans | 6e-05 |
| >pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93 | Back alignment and structure |
|
| >pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-41
Identities = 51/91 (56%), Positives = 68/91 (74%)
Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGAS 93
PQCKTRYK+ +GSP + GD +E+ +S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEEDIDSGPSS 92
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 100.0 | |
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 100.0 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 99.67 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 99.66 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 99.65 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 99.62 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 99.61 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 99.6 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 99.57 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 99.33 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 99.28 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 99.25 | |
| 2fy7_A | 287 | Beta-1,4-galactosyltransferase 1; M339H mutant, AP | 98.95 | |
| 3f1y_A | 387 | Mannosyl-3-phosphoglycerate synthase; GT-A type gl | 98.87 | |
| 2nxv_A | 249 | ATP synthase subunits region ORF 6; majastridin, A | 98.42 | |
| 2bo4_A | 397 | Mannosylglycerate synthase; catalysis, glycosyltra | 97.6 | |
| 1fo8_A | 343 | Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl | 97.23 | |
| 2zu9_A | 394 | Mannosyl-3-phosphoglycerate synthase; GT-A fold, g | 97.13 | |
| 2wvl_A | 391 | Mannosyl-3-phosphoglycerate synthase; GT-A fold, t | 96.79 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 96.41 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 87.62 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 87.25 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 86.31 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 85.85 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 85.22 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 85.12 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 84.86 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 84.35 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 83.28 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 83.21 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 82.68 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 82.55 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 81.61 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 81.33 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 80.51 |
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=326.01 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=85.3
Q ss_pred CCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCC
Q 003073 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (850)
Q Consensus 3 ~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~ 82 (850)
+.|.+++|||+++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccc-
Confidence 4577779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCC
Q 003073 83 EEDGDADDGAS 93 (850)
Q Consensus 83 e~e~~~dd~~~ 93 (850)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred ccccccccccc
Confidence 77788899874
|
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
|---|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
|---|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
|---|
| >2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... | Back alignment and structure |
|---|
| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* | Back alignment and structure |
|---|
| >2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* | Back alignment and structure |
|---|
| >2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* | Back alignment and structure |
|---|
| >1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* | Back alignment and structure |
|---|
| >2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A* | Back alignment and structure |
|---|
| >2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A* | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 850 | ||||
| d1weoa_ | 93 | g.44.1.1 (A:) Cellulose synthase A catalytic subun | 9e-48 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 5e-05 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 0.003 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 162 bits (411), Expect = 9e-48
Identities = 54/92 (58%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Query: 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGASD 94
PQCKTRYK+ +GSP + GD +E+ D D G S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEE-DIDSGPSS 92
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 100.0 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 99.68 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 99.34 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 99.16 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 97.28 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 95.97 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 95.26 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 94.3 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 84.95 | |
| d1fo8a_ | 343 | N-acetylglucosaminyltransferase I {Rabbit (Oryctol | 82.89 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.7e-46 Score=324.41 Aligned_cols=87 Identities=60% Similarity=1.288 Sum_probs=83.5
Q ss_pred CCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCC
Q 003073 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (850)
Q Consensus 3 ~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~ 82 (850)
++|+.++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD- 80 (93)
T d1weoa_ 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCChhhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCCCCCCC-
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCC
Q 003073 83 EEDGDADD 90 (850)
Q Consensus 83 e~e~~~dd 90 (850)
++||++||
T Consensus 81 e~e~~~d~ 88 (93)
T d1weoa_ 81 EDEEDIDS 88 (93)
T ss_dssp CCCCCSCC
T ss_pred cccccccc
Confidence 66666765
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|