Citrus Sinensis ID: 003081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEVKNVQAT
cccEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccc
ccEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEccccEEEccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHEHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MSVVYELGDASMKQNLVDALVTTLtgsgkrkrtvklaedsevfqegaigeglgggklSTYKELCNLAnemgqpdlIYKFMDLANYQVSlnskrgaafgFSKIAKQAGDALKPHLRLLIPKLvrfqydpdknvQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISiakgspmwdtLDLCInvvdtesldqlVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAlhiddknsqISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIassswsskRKSAKAICKLGEILGESLSNYHHVLLESIMkevpgrlwegKDALLYAIGSIStschkdisaedpttpfAIVDMVSSACRKKIKKYREAAFSCLEQVIKAfrdpkffniIFPLLFEMCgstalnksgqvplpsdaskeesadesvsapldKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTIslspgfpwtVKMSAFSSIKELCSRLQKtlddsagtsphaGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSvyssnigikgELVHQCEMEKNMEAKSLLKKCIDILENLevknvqat
MSVVYELGDASMKQNLVDALVTtltgsgkrkrtvklaedsevfqegaigeglgggKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAdiiqgrkfdqvgKHLRRIWTAAFRAMDDIKETVrtagdklcrsvtsltirlcDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWeentsgdrVTLQLYLGEIVSLICEGIassswsskrKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDilenlevknvqat
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEgaigeglgggKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPvvkeeksaaakrafasacasvLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIassswsskrksakaICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPsdaskeesadesvsaPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEVKNVQAT
**************NLVDALVTTLT***************EVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA**************************LDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKT**********AGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV******
MSVVYELGDASMKQNLVDAL*******************************L*GGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV*****SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA**QTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG*GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA**SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP**LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFE******************************APLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFR**********************************CIDILE**********
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE***********SACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS**********KAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKS********************APLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEVKNVQAT
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST**********************SVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEVKN****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEVKNVQAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query850 2.2.26 [Sep-21-2011]
Q5VYK31845 Proteasome-associated pro yes no 0.754 0.347 0.345 1e-117
Q6PDI51840 Proteasome-associated pro yes no 0.754 0.348 0.345 1e-117
Q5R6J01810 Proteasome-associated pro yes no 0.754 0.354 0.342 1e-114
Q9V6771890 Proteasome-associated pro yes no 0.777 0.349 0.281 7e-81
P387371868 Proteasome component ECM2 yes no 0.782 0.355 0.279 3e-76
Q9P7H81679 Proteasome component ecm2 yes no 0.665 0.337 0.286 2e-57
>sp|Q5VYK3|ECM29_HUMAN Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29 PE=1 SV=2 Back     alignment and function desciption
 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/662 (34%), Positives = 391/662 (59%), Gaps = 21/662 (3%)

Query: 1    MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTY 60
            + +VYELG+   +Q LV  LV TL  +GKR +  +++ ++ VFQ GA+G+   G  LSTY
Sbjct: 1009 LGLVYELGNEQDQQELVSTLVETLM-TGKRVKH-EVSGETVVFQGGALGKTPDGQGLSTY 1066

Query: 61   KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
            KELC+LA+++ QPDL+YKFM+LAN+    NS++GAAFGF+ IA +AG+ L P L  L+P+
Sbjct: 1067 KELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPR 1126

Query: 121  LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
            L R+Q+DP+  ++ AM  IW +LV D K  +D++L  I  DL+    S +WR RE+SCL+
Sbjct: 1127 LYRYQFDPNLGIRQAMTSIWNALVTD-KSMVDKYLKEILQDLVKNLTSNMWRVRESSCLA 1185

Query: 181  LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
            L D+++GR  D +   L  IW   FR  DDIKE+VR A +   ++++ + +++CD    +
Sbjct: 1186 LNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDP--AK 1243

Query: 241  ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
             +  ++++  +LP LL +G++S V  +   SI  ++K+ K AG  ++PH   L+  +LES
Sbjct: 1244 GAAGQRTIAALLPCLLDKGMMSTVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLES 1303

Query: 301  LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
            LS LE Q LNY+ L A     +   +++ R+S AK SPM +T+++C+  +D   L +LVP
Sbjct: 1304 LSVLEPQVLNYLSLRATEQ--EKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVP 1361

Query: 361  HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420
             L  L+RSG+GL T+ G AS I  L  +   D+ PY+  L+  L   +  ++++  +++ 
Sbjct: 1362 RLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLT-DRNSVIQKSC 1420

Query: 421  ASACASVLKYATPSQAQKLIEETAALHIDDKNS--QISCAILLKSYSSVASDVLSGYHAV 478
            A A   +++ +  S  +KL+++    +++ +    + SCA+ + +    + DVL  +   
Sbjct: 1421 AFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEEPIYKTSCALTIHAIGRYSPDVLKNHAKE 1480

Query: 479  IVPVIFISRFE------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS 532
            ++P+ F+   E       +K   +L+ E+W+EN  G    ++LYL E++++  + + S S
Sbjct: 1481 VLPLAFLGMHEIADEEKSEKEECNLWTEVWQENVPGSFGGIRLYLQELITITQKALQSQS 1540

Query: 533  WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592
            W  K + A A+  + +     +  Y  ++L ++++ + GR W GK+ LL AI  + T+C 
Sbjct: 1541 WKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACS 1600

Query: 593  KDISAEDPTTPFA--IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK---FFNIIFP 647
             ++    P  P    I+  V   C K+  KY+  A SC   ++KA ++ +   F NI+ P
Sbjct: 1601 AELEKSVPNQPSTNEILQAVLKECSKENVKYKIVAISCAADILKATKEDRFQEFSNIVIP 1660

Query: 648  LL 649
            L+
Sbjct: 1661 LI 1662
Adapter/scaffolding protein that binds to the 26S proteasome, motor proteins and other compartment specific proteins. May couple the proteasome to different compartments including endosome, endoplasmic reticulum and centrosome. May play a role in ERAD and other enhanced proteolyis.
Homo sapiens (taxid: 9606)
>sp|Q6PDI5|ECM29_MOUSE Proteasome-associated protein ECM29 homolog OS=Mus musculus GN=Ecm29 PE=1 SV=3 Back     alignment and function description
>sp|Q5R6J0|ECM29_PONAB Proteasome-associated protein ECM29 homolog (Fragment) OS=Pongo abelii GN=ECM29 PE=2 SV=2 Back     alignment and function description
>sp|Q9V677|ECM29_DROME Proteasome-associated protein ECM29 homolog OS=Drosophila melanogaster GN=CG8858 PE=1 SV=1 Back     alignment and function description
>sp|P38737|ECM29_YEAST Proteasome component ECM29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM29 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7H8|ECM29_SCHPO Proteasome component ecm29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ecm29 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query850
224059694 1847 predicted protein [Populus trichocarpa] 0.983 0.452 0.785 0.0
225435886 1813 PREDICTED: proteasome-associated protein 0.995 0.466 0.764 0.0
296083903 2456 unnamed protein product [Vitis vinifera] 0.995 0.344 0.764 0.0
356554187 1814 PREDICTED: LOW QUALITY PROTEIN: proteaso 0.988 0.463 0.709 0.0
357493829 1976 Proteasome-associated protein ECM29-like 0.984 0.423 0.690 0.0
297822255 1898 binding protein [Arabidopsis lyrata subs 0.995 0.445 0.680 0.0
334184491 1826 proteasome component ECM29 [Arabidopsis 0.995 0.463 0.687 0.0
20466506 1208 unknown protein [Arabidopsis thaliana] g 0.995 0.700 0.687 0.0
449481175 1822 PREDICTED: LOW QUALITY PROTEIN: proteaso 0.992 0.463 0.702 0.0
108863968 1815 HEAT repeat family protein, expressed [O 0.988 0.462 0.645 0.0
>gi|224059694|ref|XP_002299974.1| predicted protein [Populus trichocarpa] gi|222847232|gb|EEE84779.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/844 (78%), Positives = 757/844 (89%), Gaps = 8/844 (0%)

Query: 1    MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTY 60
            MS+VYELGDA+MK+ LVDALVTTLTGSGKRKR +KL EDSEVFQEG IGE L GGKLSTY
Sbjct: 1011 MSIVYELGDAAMKKTLVDALVTTLTGSGKRKRAIKLVEDSEVFQEGTIGESLSGGKLSTY 1070

Query: 61   KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
            KELC+LANEMGQPD+IYKFMDLAN+Q SLNSKRGAAFGFSKIAKQAGDAL+PHL+LLIP+
Sbjct: 1071 KELCSLANEMGQPDMIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALQPHLQLLIPR 1130

Query: 121  LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
            LVR+QYDPDKNVQDAMAHIWKSLVADPKRTID+HLDLI DDL+IQ GSRLWRSREASCL+
Sbjct: 1131 LVRYQYDPDKNVQDAMAHIWKSLVADPKRTIDQHLDLIVDDLIIQCGSRLWRSREASCLA 1190

Query: 181  LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
            LADIIQGRKF QVGKHL++IWTAAFRAMDDIKETVR AGD+LCR+++SLTIRLCD++LTE
Sbjct: 1191 LADIIQGRKFKQVGKHLKKIWTAAFRAMDDIKETVRNAGDRLCRAISSLTIRLCDISLTE 1250

Query: 241  ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
            +SDAR++M IVLP LLA+GILSKVDSI KASIGVVMKL KGAGIA+RPHLSDLV CMLES
Sbjct: 1251 VSDAREAMGIVLPLLLADGILSKVDSIRKASIGVVMKLAKGAGIALRPHLSDLVCCMLES 1310

Query: 301  LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
            LSSLEDQGLNY+ELHA N GIQ+EKLENLRISIAK SPMW+TLDLCINV++TESL+ LVP
Sbjct: 1311 LSSLEDQGLNYVELHAENVGIQSEKLENLRISIAKSSPMWETLDLCINVINTESLNLLVP 1370

Query: 361  HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420
             LA LVRSG+GLNTRVGVASFISLL+ K+G D+KP+TS+LLR+LFPVVKEEKSAAAKRAF
Sbjct: 1371 RLAHLVRSGVGLNTRVGVASFISLLIPKVGADVKPFTSILLRVLFPVVKEEKSAAAKRAF 1430

Query: 421  ASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIV 480
            ASACA VLK+A  SQAQKLIE+TAALH  +KN+QISCAILLKSY SVASDVLSGYHAVI 
Sbjct: 1431 ASACAVVLKHAGHSQAQKLIEDTAALHTGEKNAQISCAILLKSYYSVASDVLSGYHAVIF 1490

Query: 481  PVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSA 540
            PVIFISRFEDDK +S LFEELWE++TSG+RVT+ LYLGEIVSLICEG+ASSSW+SKRKSA
Sbjct: 1491 PVIFISRFEDDKNISGLFEELWEDSTSGERVTIHLYLGEIVSLICEGLASSSWTSKRKSA 1550

Query: 541  KAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDP 600
            +AICKL E++GESLS+YHHVLL+S+MKE+PGRLWEGK++LLYAIG++S+SCHK IS+E+P
Sbjct: 1551 QAICKLSEVMGESLSSYHHVLLDSVMKELPGRLWEGKESLLYAIGALSSSCHKAISSENP 1610

Query: 601  TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNK 660
             T  AI++MVSSAC KK+KKYREAAFS L+QVIKAF DPKFFN+IFPLLF MC STA NK
Sbjct: 1611 VTSDAILNMVSSACTKKVKKYREAAFSSLDQVIKAFGDPKFFNVIFPLLFGMCDSTAANK 1670

Query: 661  SGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSP 720
            SG   L SDA+K ++ D +V  PL+K+L CV SCIHVAH+NDI EQ+KNL+ L  ISLSP
Sbjct: 1671 SGSA-LASDAAKTDNVDPAV--PLEKILGCVMSCIHVAHLNDIFEQKKNLMDLLLISLSP 1727

Query: 721  GFPWTVKMSAFSSIKELCSRLQKTL-DDSAGTSPHAGISSLIQELFHTVSPKVVECISTV 779
            GF WTVK+SAFS IKELCSRLQ  L + S G S H   +S +QELF++VSPK+VECIST+
Sbjct: 1728 GFQWTVKLSAFSLIKELCSRLQSILVEASKGASQHDSATSFVQELFYSVSPKIVECISTI 1787

Query: 780  KIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDIL 839
            KIAQVHISASECLLE+  L    +SV  +++G K EL+HQ E+EKN EAKS LKKCIDI 
Sbjct: 1788 KIAQVHISASECLLEVTGL----ASVRWTDVGFKEELLHQYEVEKNEEAKSYLKKCIDIF 1843

Query: 840  ENLE 843
            ENLE
Sbjct: 1844 ENLE 1847

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435886|ref|XP_002265928.1| PREDICTED: proteasome-associated protein ECM29 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083903|emb|CBI24291.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554187|ref|XP_003545430.1| PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357493829|ref|XP_003617203.1| Proteasome-associated protein ECM29-like protein [Medicago truncatula] gi|355518538|gb|AET00162.1| Proteasome-associated protein ECM29-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297822255|ref|XP_002879010.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297324849|gb|EFH55269.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334184491|ref|NP_850086.2| proteasome component ECM29 [Arabidopsis thaliana] gi|330252792|gb|AEC07886.1| proteasome component ECM29 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20466506|gb|AAM20570.1| unknown protein [Arabidopsis thaliana] gi|30725540|gb|AAP37792.1| At2g26780 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449481175|ref|XP_004156104.1| PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|108863968|gb|ABA91356.2| HEAT repeat family protein, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query850
MGI|MGI:21402201840 AI314180 "expressed sequence A 0.754 0.348 0.330 2.6e-100
UNIPROTKB|Q5VYK31845 ECM29 "Proteasome-associated p 0.754 0.347 0.329 3.4e-100
UNIPROTKB|Q5R6J01810 ECM29 "Proteasome-associated p 0.754 0.354 0.326 1.9e-97
ASPGD|ASPL00000296341899 AN5774 [Emericella nidulans (t 0.696 0.311 0.307 2.8e-77
WB|WBGene000084221810 D2045.2 [Caenorhabditis elegan 0.723 0.339 0.303 2.3e-71
UNIPROTKB|G4NFR71835 MGG_08744 "Uncharacterized pro 0.6 0.277 0.297 2.1e-67
SGD|S0000010221868 ECM29 "Scaffold protein" [Sacc 0.725 0.330 0.269 6.2e-65
FB|FBgn00336981890 CG8858 [Drosophila melanogaste 0.556 0.250 0.237 5.1e-62
POMBASE|SPAC1782.011679 ecm29 "proteasome complex subu 0.748 0.378 0.250 9.5e-49
UNIPROTKB|G4MR95 2678 MGG_04710 "Translational activ 0.341 0.108 0.218 0.00013
MGI|MGI:2140220 AI314180 "expressed sequence AI314180" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 1006 (359.2 bits), Expect = 2.6e-100, P = 2.6e-100
 Identities = 219/662 (33%), Positives = 370/662 (55%)

Query:     1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEXXXXXXXXXXKLSTY 60
             + +VYELG+   +Q LV  LV TL  +GKR +  +++ ++ VFQ            LSTY
Sbjct:  1004 LGLVYELGNEQDQQELVSTLVETLM-TGKRVKH-EVSGETVVFQGGGLGKTPDGQGLSTY 1061

Query:    61 KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
             KELC+LA+++ QPDL+YKFM+LAN+    NS++GAAFGF+ IA +AG+ L P L  L+P+
Sbjct:  1062 KELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPR 1121

Query:   121 LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
             L R+Q+DP+  ++ AM  IW +LV D K  +D++L  I  DL+    S +WR RE+SCL+
Sbjct:  1122 LYRYQFDPNLGIRQAMTSIWNALVTD-KSMVDKYLKEILQDLIKNLTSNMWRVRESSCLA 1180

Query:   181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
             L D+++GR  D V   L  +W   FR  DDIKE+VR A +   ++++ + +++CD    +
Sbjct:  1181 LNDLLRGRPLDDVIDKLPEMWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPA--K 1238

Query:   241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
              +  ++++ ++LP LL +G++S V  +   SI  ++K+ K AG  ++PH   L+  +LES
Sbjct:  1239 GAAGQRTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLES 1298

Query:   301 LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
             LS LE Q LNY+ L A     + + +++ R+S AK SPM +T+++C+  +D   L +LVP
Sbjct:  1299 LSVLEPQVLNYLSLRATEQ--EKDVMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVP 1356

Query:   361 HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPXXXXXXXXXXXXXX 420
              L  L+RSG+GL T+ G AS I  L  +   D+ PY+  L+  L                
Sbjct:  1357 RLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALL-SGLTDRNSVIQKSC 1415

Query:   421 XXXXXXXLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAV 478
                    ++ +  S  +KL+++    ++  D+   + SCA+ + +    + DVL  +   
Sbjct:  1416 AFAMGHLVRTSRDSSTEKLLQKLNGWYMEKDEPVYKTSCALTIHAIGRYSPDVLKNHAKE 1475

Query:   479 IVPVIFISRFE------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIXXXX 532
             ++P+ F+   E       +K   +++ E+W+EN  G    ++LYL E++++  + +    
Sbjct:  1476 VLPLAFLGMHEIADEEKSEKEECNMWTEVWQENVPGSFGGIRLYLQELITITQKALQSQS 1535

Query:   533 XXXXXXXXXXICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592
                       +  + +     +  Y  ++L ++M+ + GR W GK+ LL AI  + T+C 
Sbjct:  1536 WKMKAQGAIAMASISKQTSSLVPPYLGMILSALMQGLAGRTWAGKEELLKAIACVVTACS 1595

Query:   593 KDISAEDPTTPFA--IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKF--FN-IIFP 647
              ++    P  P    I+  V   C K+  KY+  A SC   V+KA ++ +F  F+ I+ P
Sbjct:  1596 TELEKSVPNQPTTNEILQAVLKECCKENLKYKIVAISCAADVLKATKEDRFQEFSDIVIP 1655

Query:   648 LL 649
             L+
Sbjct:  1656 LI 1657
GO:0000502 "proteasome complex" evidence=IEA
GO:0005634 "nucleus" evidence=ISO
GO:0005737 "cytoplasm" evidence=IEA
GO:0005768 "endosome" evidence=IEA
GO:0005769 "early endosome" evidence=ISO
GO:0005770 "late endosome" evidence=ISO
GO:0005771 "multivesicular body" evidence=ISO
GO:0005783 "endoplasmic reticulum" evidence=ISO
GO:0005813 "centrosome" evidence=ISO
GO:0005856 "cytoskeleton" evidence=IEA
GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO
GO:0030134 "ER to Golgi transport vesicle" evidence=ISO
GO:0030139 "endocytic vesicle" evidence=ISO
GO:0030433 "ER-associated protein catabolic process" evidence=ISO
GO:0031410 "cytoplasmic vesicle" evidence=IEA
UNIPROTKB|Q5VYK3 ECM29 "Proteasome-associated protein ECM29 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R6J0 ECM29 "Proteasome-associated protein ECM29 homolog" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029634 AN5774 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00008422 D2045.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4NFR7 MGG_08744 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000001022 ECM29 "Scaffold protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0033698 CG8858 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC1782.01 ecm29 "proteasome complex subunit Ecm29" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.2019.1
hypothetical protein (1843 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 850
KOG09151702 consensus Uncharacterized conserved protein [Funct 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.95
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.93
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.93
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.9
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.9
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.86
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.84
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.83
KOG1242569 consensus Protein containing adaptin N-terminal re 99.73
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.68
KOG1242569 consensus Protein containing adaptin N-terminal re 99.66
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.61
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.59
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.55
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.5
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.48
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.45
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.45
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.41
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.34
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.24
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.24
PTZ00429746 beta-adaptin; Provisional 99.11
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.08
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.05
PTZ00429746 beta-adaptin; Provisional 99.03
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 98.98
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.98
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.89
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.89
PRK09687280 putative lyase; Provisional 98.88
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.79
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.79
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.76
KOG12481176 consensus Uncharacterized conserved protein [Funct 98.75
PRK09687280 putative lyase; Provisional 98.69
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.6
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.57
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.55
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.49
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.47
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.47
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 98.41
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.41
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.39
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 98.33
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.25
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.21
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.09
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.05
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.02
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.01
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.97
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.96
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.93
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.93
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 97.91
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.89
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 97.88
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.85
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 97.78
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.72
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.7
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.66
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.63
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.63
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.63
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.59
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.5
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.48
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.47
KOG2956516 consensus CLIP-associating protein [General functi 97.44
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.38
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.34
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.31
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 97.29
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.27
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.24
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.24
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.24
TIGR02270410 conserved hypothetical protein. Members are found 97.19
KOG2956516 consensus CLIP-associating protein [General functi 97.17
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.16
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.11
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.07
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 97.06
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.03
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.03
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.02
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.02
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.02
PF05804708 KAP: Kinesin-associated protein (KAP) 96.97
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.94
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.9
COG5096757 Vesicle coat complex, various subunits [Intracellu 96.9
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.82
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.81
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 96.79
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.77
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 96.72
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.63
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.61
KOG4535728 consensus HEAT and armadillo repeat-containing pro 96.53
KOG4535728 consensus HEAT and armadillo repeat-containing pro 96.51
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.46
TIGR02270410 conserved hypothetical protein. Members are found 96.41
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 96.35
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.27
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.24
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.13
PF05004309 IFRD: Interferon-related developmental regulator ( 96.11
KOG2032533 consensus Uncharacterized conserved protein [Funct 95.99
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.96
COG5098 1128 Chromosome condensation complex Condensin, subunit 95.96
COG5656970 SXM1 Importin, protein involved in nuclear import 95.88
KOG2025892 consensus Chromosome condensation complex Condensi 95.75
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 95.75
PF05004309 IFRD: Interferon-related developmental regulator ( 95.73
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.7
COG1413335 FOG: HEAT repeat [Energy production and conversion 95.64
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 95.56
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 95.44
KOG2062929 consensus 26S proteasome regulatory complex, subun 95.14
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 95.13
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 95.06
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 95.03
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 95.03
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.03
KOG04141251 consensus Chromosome condensation complex Condensi 95.0
PF13251182 DUF4042: Domain of unknown function (DUF4042) 94.75
KOG2933334 consensus Uncharacterized conserved protein [Funct 94.72
PF08167165 RIX1: rRNA processing/ribosome biogenesis 94.71
KOG2025 892 consensus Chromosome condensation complex Condensi 94.68
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.65
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.44
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 94.42
PF13251182 DUF4042: Domain of unknown function (DUF4042) 94.35
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.27
KOG18511710 consensus Uncharacterized conserved protein [Funct 94.16
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.15
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 94.11
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.07
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.04
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 93.9
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 93.84
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 93.83
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 92.87
COG5656970 SXM1 Importin, protein involved in nuclear import 92.83
KOG2137700 consensus Protein kinase [Signal transduction mech 92.8
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 92.38
COG5116926 RPN2 26S proteasome regulatory complex component [ 92.13
KOG4413524 consensus 26S proteasome regulatory complex, subun 92.11
PF05804708 KAP: Kinesin-associated protein (KAP) 91.96
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 91.87
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 91.83
KOG0567289 consensus HEAT repeat-containing protein [General 91.66
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 91.55
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 91.54
KOG1243690 consensus Protein kinase [General function predict 91.36
KOG0414 1251 consensus Chromosome condensation complex Condensi 91.1
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 90.97
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 90.74
PF14868559 DUF4487: Domain of unknown function (DUF4487) 90.59
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 90.5
PF14500262 MMS19_N: Dos2-interacting transcription regulator 90.46
COG5096757 Vesicle coat complex, various subunits [Intracellu 90.29
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.28
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 90.17
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.7
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 89.67
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 89.47
smart00638574 LPD_N Lipoprotein N-terminal Domain. 89.46
KOG0413 1529 consensus Uncharacterized conserved protein relate 89.36
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 89.22
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 89.18
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 89.1
KOG2549576 consensus Transcription initiation factor TFIID, s 88.88
COG5218885 YCG1 Chromosome condensation complex Condensin, su 88.56
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 88.09
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 87.65
KOG2062929 consensus 26S proteasome regulatory complex, subun 87.42
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 87.33
KOG45241014 consensus Uncharacterized conserved protein [Funct 87.18
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 87.14
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 87.07
KOG1243690 consensus Protein kinase [General function predict 86.93
KOG3961262 consensus Uncharacterized conserved protein [Funct 86.93
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 86.91
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.63
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 86.62
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 85.54
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 85.23
KOG2549576 consensus Transcription initiation factor TFIID, s 85.0
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 84.95
KOG1293678 consensus Proteins containing armadillo/beta-caten 84.92
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 84.83
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 84.7
PF1036392 DUF2435: Protein of unknown function (DUF2435) 84.53
KOG2933334 consensus Uncharacterized conserved protein [Funct 84.48
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 84.18
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 84.03
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 83.26
KOG3961262 consensus Uncharacterized conserved protein [Funct 83.07
KOG2137700 consensus Protein kinase [Signal transduction mech 83.0
KOG45241014 consensus Uncharacterized conserved protein [Funct 82.07
PF10350255 DUF2428: Putative death-receptor fusion protein (D 81.55
PF1036392 DUF2435: Protein of unknown function (DUF2435) 81.55
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 81.25
KOG2081559 consensus Nuclear transport regulator [Intracellul 80.29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-123  Score=1083.52  Aligned_cols=796  Identities=39%  Similarity=0.629  Sum_probs=662.2

Q ss_pred             CcceeecCChhhHHHHHHHHHHHhccCcccccccccccCcccccCCcccccCCCCccchHHHHHHHhhhcCCchHHHHHH
Q 003081            1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFM   80 (850)
Q Consensus         1 l~~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~lf~~g~~~~~~~g~~~styk~l~~lA~~~g~p~lv~~fm   80 (850)
                      ||||||+||..+|++||++||+|||||+++  +++|++|||||++|+||+||+||++|||||||+||+|+||||||||||
T Consensus       885 lglVYelgd~~~k~~LV~sL~~tl~~Gkr~--~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM  962 (1702)
T KOG0915|consen  885 LGLVYELGDSSLKKSLVDSLVNTLTGGKRK--AIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM  962 (1702)
T ss_pred             ceEEEecCCchhHHHHHHHHHHHHhccccc--cceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence            799999999999999999999999997655  589999999999999999999999999999999999999999999999


Q ss_pred             HHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 003081           81 DLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFD  160 (850)
Q Consensus        81 ~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~  160 (850)
                      +||+|+|.||||+||||||+.|++++++.++||++++||+||||+|||++.||++|.+||++|++|++.++++|+.+|++
T Consensus       963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen  963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred             HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 003081          161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE  240 (850)
Q Consensus       161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~  240 (850)
                      +|+.++++++|||||+||.|+.||++|++.+++.++++++|.++||+|||+|++||+||.++++.++++|+|.|++.+  
T Consensus      1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-- 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-- 1120 (1702)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999854  


Q ss_pred             chhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcc
Q 003081          241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG  320 (850)
Q Consensus       241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~  320 (850)
                      +..+++++..+||||+++|+.+++++||.+++.++.+++|..|+.|+||+|+|+|.|+++.+.+||+++||+..|+  ++
T Consensus      1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~--~~ 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL--IN 1198 (1702)
T ss_pred             cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh--hh
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999999999  67


Q ss_pred             cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHH
Q 003081          321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML  400 (850)
Q Consensus       321 ~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~l  400 (850)
                      +..+++|.+|.+++++||||+++++|++|+|..+|++++|++++++|.++|++||+||+++++.|+.|+|.+++||.+++
T Consensus      1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred             hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC-Cch-hhHHHHHHHHHHHhhchhhhhhhHhh
Q 003081          401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKN-SQISCAILLKSYSSVASDVLSGYHAV  478 (850)
Q Consensus       401 L~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~-d~~-~r~~~~~~l~al~~~~~~~f~~~~~~  478 (850)
                      +++|+.++ .|||++||++++.|+|+|++..++++.+++++.+..+|.+ ++. +..+|+.+.. |++++++.|++|.+.
T Consensus      1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asa 1356 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASA 1356 (1702)
T ss_pred             HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHH
Confidence            99999999 6899999999999999999999999999999999998874 333 3444554444 999999999999999


Q ss_pred             HhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhCcchh-h
Q 003081          479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEG-IASSSWSSKRKSAKAICKLGEILGESLS-N  556 (850)
Q Consensus       479 vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~-L~d~s~~vr~~aa~alg~la~~~g~~l~-~  556 (850)
                      ++|++|.+||+.+++..++|.++|.++++|..++++.|.++|+..++.. .++.+|.+|.+++.++..++..+..... |
T Consensus      1357 ILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p 1436 (1702)
T KOG0915|consen 1357 ILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIP 1436 (1702)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChH
Confidence            9999999999988899999999999999999999999999999888877 5556699999999999999987766655 6


Q ss_pred             hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081          557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF  636 (850)
Q Consensus       557 ~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~  636 (850)
                      ++-.+.+.+.+++.||+|+||+.+++|+.....+|......    ..+.+.-+..+++.|.+..|+..+..+.+..+.+.
T Consensus      1437 ~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~----~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda~ 1512 (1702)
T KOG0915|consen 1437 VILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR----NMSSIEHAVMEEVSRREAKYKIMALAGAGLALDAT 1512 (1702)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH----hchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhh
Confidence            78899999999999999999999999999888888754432    23478888889999999999999999999999999


Q ss_pred             CCchh--HHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhh-cccccHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 003081          637 RDPKF--FNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADE-SVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQL  713 (850)
Q Consensus       637 ~~~~~--~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (850)
                      +.+++  .....++-.+..+++..         .-..+.+.+.. .+.....-+++...+ .++.|+...      +   
T Consensus      1513 ~~e~~~~~~~~~~L~K~~d~~~s~---------~~qt~~e~d~~~~ka~~~~~lkes~~~-~~~~~~~~~------~--- 1573 (1702)
T KOG0915|consen 1513 KAERFEEVENAVWLAKKSDDEVSK---------LIQTRNEADIDDNKAGLLNLLKESRES-KLYTLNLTA------L--- 1573 (1702)
T ss_pred             hhhhHHHHHHHHHHHhhhhhhhcc---------cccccchhhhhhccccHHHHHHHHHhh-hhhhhhhhh------h---
Confidence            76543  22223332222221110         00111111011 111222212233222 234554332      1   


Q ss_pred             HHhhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHH
Q 003081          714 FTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLL  793 (850)
Q Consensus       714 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~  793 (850)
                       +......+..++...+++.+.++.....-.   +      .+.      .+ ...+....+++..+.+|..+.+..|..
T Consensus      1574 -~is~~a~~~sr~~~~lLs~i~~~v~~~~~~---~------~s~------~f-~~~~~~l~~e~~~p~ar~~i~~~~c~~ 1636 (1702)
T KOG0915|consen 1574 -AISCPAFSNSREPESLLSQITDYVKSLVIA---D------KSA------QF-FFNELALSEEHTTPRARFVIAGKLCDN 1636 (1702)
T ss_pred             -hhhhhhhhcchhhHHHHHHHHHHHHHhHHH---H------HHH------HH-HHHHHHHHhhccChhhhHHHHHHHHHH
Confidence             111223455666666666666665544422   0      000      01 111222344555567776677777776


Q ss_pred             HHHHHhccccccccCccchHHHHHHHHHHhhhH---HHHHHHHHHHHHhccccc
Q 003081          794 EICKLFRQISSVYSSNIGIKGELVHQCEMEKNM---EAKSLLKKCIDILENLEV  844 (850)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  844 (850)
                      .++.+.-.....+....+..-+|.-.+..|-++   +.++.++-..+.+.+.++
T Consensus      1637 il~~~~~~~~~~~~~~a~~~leVvL~li~~s~~~~~~~~sll~~i~esla~~pe 1690 (1702)
T KOG0915|consen 1637 ILEQLDELCASPHKTEATDALEVVLRLIERSSRFGVDANSLLRLINESLAGEPE 1690 (1702)
T ss_pred             HHHHHHHhhcCCcchhHHHHHHHHHHHHHhcccccchhHHHHHHHHHhhhcCCC
Confidence            666555222112344455566666666665666   566666666666665443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query850
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-12
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 8e-06
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 7e-04
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 5e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.6 bits (177), Expect = 4e-13
 Identities = 104/691 (15%), Positives = 192/691 (27%), Gaps = 227/691 (32%)

Query: 113 HLRLLIPKLVR-FQYDPD-KNVQDAMAHIWKS-----LVADPKRTIDEHLDLIFDDLLIQ 165
             + ++      F  + D K+VQD    I        ++             +F   L+ 
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--VSGTLRLFW-TLLS 73

Query: 166 SGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR----IWTA---AFRAMDDIKETVRTA 218
                             ++Q  KF  V + LR     + +      R    +       
Sbjct: 74  KQEE--------------MVQ--KF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 219 GDKLCRSVTSLTIRLCDVT----LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274
            D+L            +V+      ++  A   +      +L +G               
Sbjct: 116 RDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELR-PAKNVLIDG--------------- 157

Query: 275 VMKLVKGAGIAIRPHLSDLVSCM-LESLSSLEDQGLNYIELHAANAGIQT------EKLE 327
            +    G+G           + + L+   S + Q     ++   N           E L+
Sbjct: 158 -VL---GSG----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 328 NLRISIAKGSPMWDTL-DLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386
            L   I    P W +  D   N+     +  +   L RL++S                  
Sbjct: 204 KLLYQI---DPNWTSRSDHSSNI--KLRIHSIQAELRRLLKS------------------ 240

Query: 387 QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAL 446
                  KPY + LL     V+   ++A A  AF                          
Sbjct: 241 -------KPYENCLL-----VLLNVQNAKAWNAFN------------------------- 263

Query: 447 HIDDKNSQISCAILLKS-YSSVASDVLSGYHAVIVPVIFISR-FEDD-------KYVSDL 497
                   +SC ILL + +  V  D LS      + +   S     D       KY+   
Sbjct: 264 --------LSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 498 FEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN- 556
            ++L  E  + +       L  I   I +G+A  +W + +       KL  I+  SL+  
Sbjct: 315 PQDLPREVLTTN----PRRLSIIAESIRDGLA--TWDNWKHVNCD--KLTTIIESSLNVL 366

Query: 557 --------YHH--VLLES--IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE---DPT 601
                   +    V   S  I   +   +W         +  +    HK    E     +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKES 424

Query: 602 TPFAIVDMVSSAC----------RKKIKKYREAAFSCLEQVIKAFRDPKFFNII------ 645
           T  +I  +               R  +  Y        + +I  + D  F++ I      
Sbjct: 425 T-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 646 ---------FPLLF--------EMCGS-TALNKSGQV-PLPSDASKEES----ADESVSA 682
                    F ++F        ++    TA N SG +          +      D     
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 683 PLDKVLDCVSSCIHVAHVNDIIEQEKNLVQL 713
            ++ +LD +         N I  +  +L+++
Sbjct: 544 LVNAILDFLPKIEE----NLICSKYTDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query850
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.97
1qgr_A876 Protein (importin beta subunit); transport recepto 99.97
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.97
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.97
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.97
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.97
1qgr_A876 Protein (importin beta subunit); transport recepto 99.96
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.96
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.84
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.79
2x19_B963 Importin-13; nuclear transport, protein transport; 99.76
2x1g_F971 Cadmus; transport protein, developmental protein, 99.75
2x1g_F971 Cadmus; transport protein, developmental protein, 99.66
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.62
2x19_B963 Importin-13; nuclear transport, protein transport; 99.61
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.61
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.57
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.55
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.55
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.55
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.54
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.53
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.52
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.51
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.5
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.5
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.5
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.49
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.43
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.42
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.41
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.41
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.41
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.38
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.38
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.37
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.37
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.36
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.33
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.3
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.3
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.29
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.27
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.21
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.2
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.17
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.11
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.08
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.06
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.05
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.03
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.01
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.99
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.92
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.87
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.84
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.82
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.77
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.73
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.72
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.72
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.71
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.7
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.7
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.63
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.63
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.59
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.58
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.58
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.47
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.45
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.44
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.43
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.34
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.31
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.24
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.12
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.11
3nmz_A458 APC variant protein; protein-protein complex, arma 98.04
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.98
3nmz_A458 APC variant protein; protein-protein complex, arma 97.96
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.94
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 97.91
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.91
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.85
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.82
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.78
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.76
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.74
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.73
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.61
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.57
3grl_A651 General vesicular transport factor P115; vesicle t 97.49
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.37
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.35
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.21
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.01
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 96.92
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 96.64
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 96.54
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 95.74
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 95.64
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 95.33
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.73
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 93.47
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.41
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 92.91
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.49
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 91.31
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 90.99
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 89.6
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 89.36
3grl_A 651 General vesicular transport factor P115; vesicle t 88.94
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.1
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 82.22
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 80.93
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=1.9e-29  Score=312.34  Aligned_cols=562  Identities=14%  Similarity=0.157  Sum_probs=432.3

Q ss_pred             hHHHHHHHhhh---cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhc-----hhhhhHHHHHHhhcCCCCH
Q 003081           59 TYKELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDK  130 (850)
Q Consensus        59 tyk~l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~-----p~L~~lvp~L~r~~~Dp~~  130 (850)
                      +...|..+|..   -.||+++..+..+.++. .+..|++|+.+|+.|++..++.+.     .++..++|.|++.+.|+++
T Consensus       110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~  188 (852)
T 4fdd_A          110 VGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP  188 (852)
T ss_dssp             HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence            33455555554   37899999999988775 488999999999999998865543     3478899999999999999


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003081          131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD  210 (850)
Q Consensus       131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD  210 (850)
                      .||.++..+...++...+.....+++.+++.++..++|++++||..+|.+|+.+.+..+ +.+.+|+..+++.++..+.|
T Consensus       189 ~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~  267 (852)
T 4fdd_A          189 KIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQD  267 (852)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccC
Confidence            99999999888887655455666788999999999999999999999999999998654 66889999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHH-----------------HHHHhh------------hc----------ccCc-c---------
Q 003081          211 IKETVRTAGDKLCRSVTS-----------------LTIRLC------------DV----------TLTE-I---------  241 (850)
Q Consensus       211 ~k~~VR~aA~~~~~~L~~-----------------~~~r~~------------~~----------~~~~-~---------  241 (850)
                      ..+.||..|...+.++++                 .++...            ++          ..-. .         
T Consensus       268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~  347 (852)
T 4fdd_A          268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV  347 (852)
T ss_dssp             SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence            999999988766555432                 111111            10          0000 0         


Q ss_pred             ---hhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhh
Q 003081          242 ---SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN  318 (850)
Q Consensus       242 ---~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~  318 (850)
                         .....+++.++|++.+ .+.++++.+|..++.+++.+++.++..+.||+++++|.++..+++.+|.+..-..+..+.
T Consensus       348 la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~  426 (852)
T 4fdd_A          348 LANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR  426 (852)
T ss_dssp             HHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence               0012345667887763 466788999999999999999998888999999999999999998776654323222221


Q ss_pred             cccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH
Q 003081          319 AGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS  398 (850)
Q Consensus       319 ~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~  398 (850)
                      +.                       +.+-.......+..++|.+.+.+++. ....|..++..+..++..++..+.||.+
T Consensus       427 l~-----------------------~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~  482 (852)
T 4fdd_A          427 YA-----------------------HWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLA  482 (852)
T ss_dssp             TH-----------------------HHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred             HH-----------------------HHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence            10                       00111112345678899999988765 4567889999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-----HHHHHHHHHHHHHhhc----CCchhhHHHHHHHHHHHhhch
Q 003081          399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI----DDKNSQISCAILLKSYSSVAS  469 (850)
Q Consensus       399 ~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-----~~~v~~li~~l~~~~~----~d~~~r~~~~~~l~al~~~~~  469 (850)
                      .+++.++..+ ++.+.........+++.++...+     ++.+..+++.+.+.+.    ++++.+ .+..+++.+++..+
T Consensus       483 ~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g  560 (852)
T 4fdd_A          483 YILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ  560 (852)
T ss_dssp             HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence            9999999999 55555555667788888875433     3456677777765542    233344 56788888888888


Q ss_pred             hhhhhhHhhHhHHHHHHhc-----------------CCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHHhhcC
Q 003081          470 DVLSGYHAVIVPVIFISRF-----------------EDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIAS  530 (850)
Q Consensus       470 ~~f~~~~~~vlP~l~~~~~-----------------d~~~~v~~~~~~v~~~l~~~~~~~i~~yl--~eIl~ll~~~L~d  530 (850)
                      ..|.+|.+.++|.+.....                 .++.+++....+.++.++.+.+..+.+|+  +.+++++..++.|
T Consensus       561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~  640 (852)
T 4fdd_A          561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD  640 (852)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence            8999999988885432110                 12455776667777777777767788998  7899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHH
Q 003081          531 SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMV  610 (850)
Q Consensus       531 ~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l  610 (850)
                      ++..+|+.+..++++++..+|..+.+|++.++|.+.+.+....++.|..+..+++.++...+..+    .+|++.+++.+
T Consensus       641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~----~p~~~~il~~L  716 (852)
T 4fdd_A          641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM----QPYIPMVLHQL  716 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG----GGGTHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999977778899999999999998876544    46888999988


Q ss_pred             HHHHhhc--CHHHHHHHHHHHHHHHHHcCC---chhHHhHHHHHHhhc
Q 003081          611 SSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMC  653 (850)
Q Consensus       611 ~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~---~~~~~iv~~~l~~~~  653 (850)
                      ++-++..  ...++..|+.++|++....+.   +.+.+++.+++..+.
T Consensus       717 ~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~  764 (852)
T 4fdd_A          717 VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR  764 (852)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc
Confidence            8887654  468999999999999998653   345677777777664
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 850
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-08
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 5e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-04
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 71/694 (10%), Positives = 166/694 (23%), Gaps = 68/694 (9%)

Query: 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG-------------- 219
           R  +   L   +Q           R++     + ++D    V+                 
Sbjct: 20  RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY 79

Query: 220 ------DKLC----------RSVTSLTIRLCDVTLTEISDARQSMDIVLPFL---LAEGI 260
                 D LC          R ++S+ ++     L   S        V   +   L   I
Sbjct: 80  QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI 139

Query: 261 LSKVD-SISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA 319
             + D S+   ++ ++  ++   G  +      +++C+L  L+S        +      A
Sbjct: 140 AKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRL----AVRKRTIIA 195

Query: 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVA 379
                                  L   +          L+ HL   +     ++T     
Sbjct: 196 -----------------------LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 232

Query: 380 SFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKL 439
             I+ + ++ G  I  Y   ++ L+      +     +     A  S ++         +
Sbjct: 233 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI-QAFESFVRRCPKEVYPHV 291

Query: 440 IEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE 499
                                     +                 +    +    V     
Sbjct: 292 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 351

Query: 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH 559
           +  +   S     L  +   +   +         + K     A   L +      S    
Sbjct: 352 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411

Query: 560 VLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIK 619
                  +     L      ++ A+                     +V+++  A  + I 
Sbjct: 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 471

Query: 620 KYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADES 679
                    L     +            ++         +   Q  +P   +        
Sbjct: 472 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYK 531

Query: 680 VSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLS----PGFPWTVKMSAFSSIK 735
           +++    V   +   I         +    +  LFT ++           VK  A S + 
Sbjct: 532 ITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG 591

Query: 736 ELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECI--STVKIAQVHISASECLL 793
           ++   L   L      +    +  L  E+    + K +  I  S +KI    +      +
Sbjct: 592 QIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI 651

Query: 794 EICKLFRQISSVYSSNIGIKGELVHQCEMEKNME 827
               L +   ++    +     L+          
Sbjct: 652 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAA 685
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query850
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.96
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.94
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.93
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.92
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.92
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.9
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.89
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.89
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.87
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.55
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.48
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.48
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.12
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.98
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.98
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.94
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.89
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.86
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.8
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.76
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.72
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.57
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.45
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.31
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.14
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.14
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.07
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.82
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.68
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.43
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.26
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.36
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 88.96
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 88.67
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 87.87
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 87.61
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-27  Score=292.91  Aligned_cols=553  Identities=14%  Similarity=0.164  Sum_probs=404.5

Q ss_pred             cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhh-----chhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhc
Q 003081           70 MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDAL-----KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLV  144 (850)
Q Consensus        70 ~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l-----~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv  144 (850)
                      -+||++++.++.+..+. .++.+.||+.+|+.|++..++.+     ...++.++|.++.+..|+++.||..+..+++.++
T Consensus       122 ~~Wpell~~L~~~l~s~-~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~  200 (888)
T d1qbkb_         122 QNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI  200 (888)
T ss_dssp             CSSTTTSTTTTTSSTGG-GSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGG
T ss_pred             cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            35899999988877655 47889999999999998765444     3456789999999999999999999999999888


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 003081          145 ADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCR  224 (850)
Q Consensus       145 ~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~  224 (850)
                      .........+++.+++.++....+++++||+.+|.+++.+++..+ +.+.+|+..+++.++..+.|..+.||..|...+.
T Consensus       201 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~  279 (888)
T d1qbkb_         201 ISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL  279 (888)
T ss_dssp             GCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCT-TTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHC
T ss_pred             HhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            665555667889999999999999999999999999998887543 6688899999888888888888999987765433


Q ss_pred             HHHHH-----------------HH--------------------------------------------------------
Q 003081          225 SVTSL-----------------TI--------------------------------------------------------  231 (850)
Q Consensus       225 ~L~~~-----------------~~--------------------------------------------------------  231 (850)
                      ++++.                 +.                                                        
T Consensus       280 ~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (888)
T d1qbkb_         280 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD  359 (888)
T ss_dssp             CCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence            22110                 00                                                        


Q ss_pred             --------------Hhhhccc---CcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHH
Q 003081          232 --------------RLCDVTL---TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLV  294 (850)
Q Consensus       232 --------------r~~~~~~---~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lv  294 (850)
                                    |.+....   -.......+++.++|++. ..+.+++|..|..++.+++.|++.+...+.||+|+++
T Consensus       360 ~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~-~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li  438 (888)
T d1qbkb_         360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK-ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI  438 (888)
T ss_dssp             HTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHH-HTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHH-HhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhh
Confidence                          0000000   000001235667788776 4688888999999999999999988888999999999


Q ss_pred             HHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCch
Q 003081          295 SCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNT  374 (850)
Q Consensus       295 p~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~t  374 (850)
                      |.++..+++.+|.+.....+..+++.                       +.+........+..+++.+...+.+. ...+
T Consensus       439 ~~l~~~l~d~~~~Vr~~a~~~l~~~~-----------------------~~~~~~~~~~~~~~~l~~ll~~l~d~-~~~V  494 (888)
T d1qbkb_         439 PHLIQCLSDKKALVRSITCWTLSRYA-----------------------HWVVSQPPDTYLKPLMTELLKRILDS-NKRV  494 (888)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHTH-----------------------HHHHSSCHHHHTTTHHHHHHHHHSSS-CHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHH-----------------------HHhhhhhhhhhhhhhHHHHHHHhcCC-CHHH
Confidence            99999999888776544443333221                       00111111223466788888877764 3456


Q ss_pred             HhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-----HHHHHHHHHHHHHhhc-
Q 003081          375 RVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI-  448 (850)
Q Consensus       375 r~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-----~~~v~~li~~l~~~~~-  448 (850)
                      +.+|+.++..++...+..+.||.+.+++.+...+ .+.....+.....+++.++...+     ++....+++.+.+.+. 
T Consensus       495 ~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  573 (888)
T d1qbkb_         495 QEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM  573 (888)
T ss_dssp             HHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence            7789999999999999999999999999999999 56677777777778887765432     3445666666666653 


Q ss_pred             --CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH--------H----h-----cCCchHHHHHHHHHHHHhcCCC
Q 003081          449 --DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI--------S----R-----FEDDKYVSDLFEELWEENTSGD  509 (850)
Q Consensus       449 --~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~--------~----~-----~d~~~~v~~~~~~v~~~l~~~~  509 (850)
                        .++.........+..+....++.|.++...+.+.++.        .    .     ...+++......+++..+..+.
T Consensus       574 ~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l  653 (888)
T d1qbkb_         574 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL  653 (888)
T ss_dssp             SCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHh
Confidence              2233333445566666666666666655544432211        0    0     1123444444455665555544


Q ss_pred             hhhHHhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 003081          510 RVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSI  587 (850)
Q Consensus       510 ~~~i~~yl~--eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l  587 (850)
                      +..+.+|+.  .+++++..++.+.++.+|+.|..++|+++...+..+.+|++.++|.+.+.+....++.|..++.++|.+
T Consensus       654 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~i  733 (888)
T d1qbkb_         654 GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEI  733 (888)
T ss_dssp             TTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            444556654  378889999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHhcccccccCCCCchHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHcCCc---hhHHhHHHHHHhhcc
Q 003081          588 STSCHKDISAEDPTTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKAFRDP---KFFNIIFPLLFEMCG  654 (850)
Q Consensus       588 ~~~~~~~l~~~~~~~~~~i~~~l~~e~~r--~~~~~R~~Al~~Lg~l~~~~~~~---~~~~iv~~~l~~~~~  654 (850)
                      +...++.+    .||++.+++.+++-+++  .+..++..++.|+|+++...|+.   .+-+.+.+++..+..
T Consensus       734 a~~~~~~~----~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~  801 (888)
T d1qbkb_         734 SIQMGIEM----QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN  801 (888)
T ss_dssp             HHHTGGGG----GGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTT
T ss_pred             HHHHHHHh----hhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhcc
Confidence            99887654    36888888888888765  34678999999999999887642   234455566666643
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure