Citrus Sinensis ID: 003082
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYL7 | 852 | Pentatricopeptide repeat- | yes | no | 0.98 | 0.977 | 0.546 | 0.0 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.385 | 0.598 | 0.272 | 2e-28 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.452 | 0.446 | 0.234 | 4e-27 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.5 | 0.568 | 0.232 | 4e-27 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.501 | 0.520 | 0.220 | 3e-26 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.442 | 0.394 | 0.241 | 4e-26 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.465 | 0.401 | 0.239 | 7e-26 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.431 | 0.330 | 0.223 | 3e-25 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.445 | 0.534 | 0.224 | 3e-25 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.52 | 0.596 | 0.224 | 1e-24 |
| >sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/855 (54%), Positives = 605/855 (70%), Gaps = 22/855 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEV 769
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G V DD++I++G ++ N + K ++ V
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITV 780
Query: 770 KDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQR 829
++A+ KLL+D+L L V G ++AH D E N + I SSTRRP IL+R
Sbjct: 781 QEALVKLLRDELSLVVLPAGQRNIIQDAHCVDDADQE-NTKSFVSI---SSTRRPAILER 836
Query: 830 LKVPKKSLHHWLQRR 844
L V K SL+ WLQRR
Sbjct: 837 LMVTKASLYQWLQRR 851
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 21/349 (6%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F S T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LFREMSQRG-------LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 193/444 (43%), Gaps = 59/444 (13%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA 585
Y V L ++M + P+ ++ +I ACG G E A +IL+ M + + P A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA 459
Query: 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645
YT I+ ++ ++A F M P++ T+ +LL + +R G + E + L+
Sbjct: 460 YTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV 519
Query: 646 DMWKAGYKANDTYLKELIEEWCEG 669
D +G N IE + +G
Sbjct: 520 D---SGIPRNRDTFNAQIEAYKQG 540
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/478 (23%), Positives = 213/478 (44%), Gaps = 53/478 (11%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY--- 621
E ALQ+ M E G+ PDVV Y+ I + R ++A L ++ + + P+ VTY
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 622 ------------ITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667
++L++ G + E Q V++ M +K + T +I C
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQ---VFESMLGKNHKPDGTAYNIMIHGHC 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 213/458 (46%), Gaps = 32/458 (6%)
Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
+ P+++ T++ G + +I+E++R+ NI FN+ + + + KFT +
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
+++ + G+ D+ ++N LL + G + E+ G K ++ G + + T++T+
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLL---AVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTL 495
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ ++ A+ V ML AGVTP+ T+++++ A A G+ EQ+ + EM C
Sbjct: 496 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 555
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
+PN LL A + L E Y G + + + K
Sbjct: 556 KPNELTYCSLLHAYANGKEIGLMHSLAE------------EVYSGVIEPRAVL-LKTLVL 602
Query: 490 ITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
+ + + +P + +S +R F P TT N ++ KA +++ M+ G +
Sbjct: 603 VCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
P+ ++ L+ S + + +IL+ + G+ PD+++Y T I R+ R++ A +
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
F EM++ I P+++TY T + + Y + ++ + V + M K G + N +++
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGS---YAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 666 WCEGVIQDKNQNQGEVTLCRRTNSQRPQS---LLLEKV 700
+C+ + K++ + V R + P+ LLE++
Sbjct: 779 YCK--LNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERI 814
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 182/405 (44%), Gaps = 29/405 (7%)
Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
I T++D + D K +++ L+ T + + L+N+ K + LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
++ GV ++ +Y++++ + A ++ ++ K +K DV Y+ I+ F
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
A++ ++M P T T+ +I+ A +G + +++ +F+ M + GC P
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
N L+ VE Q ++A + TL+ +S EH K Q +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
+ Y + + TY L+KACC AL EM + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
+ ILID G+V A +++ M+++G+ PD+ YT+ I C ++ + +A EEM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 792 ALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPD 833
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 193/484 (39%), Gaps = 88/484 (18%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM--------- 579
+ L++ M G PN I + LID G ++ A ++ M E G
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714
Query: 580 --------------------------SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613
+P+VV YT I + + +A+ L + M+
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774
Query: 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQD 673
QPN+VTY ++ +G + +++ CL + + M G N + LI+ C+ D
Sbjct: 775 CQPNVVTYTAMIDG---FGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831
Query: 674 KNQN 677
N
Sbjct: 832 VAHN 835
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 176/402 (43%), Gaps = 35/402 (8%)
Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ +++ + + N+Y F + V A + E+ K M G D+ +Y +L+ A
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
C A A+E++ ++K G K D TY T++ F+D + + +M G
Sbjct: 304 CTARKLDCAKEVFEKMK----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359
Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
P+ +T++ L++A AG +A + M G PN N L+ + + D A
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 455 LFRSW------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVP-NSHYSSFD 506
LF + + T + + Y + D +S +E +K PN V N+ S
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
K + K + ++ +GL P+ +++ +++ G ++
Sbjct: 480 KAGRDR------------------EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDE 521
Query: 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626
A+++L M E+G PDV+ + I ++ R+ +A+ +F MK +++P +VTY TLL
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581
Query: 627 ARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668
+ G ++Q+ + +++ M + G N L + C+
Sbjct: 582 GLGKNG---KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 196/472 (41%), Gaps = 93/472 (19%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
L + + F K D AL+ ++ S +II G +++ A++E+L
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
R + +N+L+ V LK + M+K GV D +Y++L+ A AG
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P+
Sbjct: 391 ESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
++ +I+ ++ AM F+ ML G EP+ N L+ C+ R
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC---HCKHGR--------- 494
Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
+ V + + ++R P TTYNI
Sbjct: 495 ----------------------------------HIVAEEMFEAMERRGCL-PCATTYNI 519
Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL------- 571
++ + + +K L+ +M++ G+ PN ++ T L+D G SG A++ L
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 572 ----------------------------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++M DG+ P ++A + I +R +AF
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAF 639
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++ + MK ++P++VTY TL++A R + + Q+ VY++M +G K +
Sbjct: 640 AVLQYMKENGVKPDVVTYTTLMKALIR---VDKFQKVPVVYEEMIMSGCKPD 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/485 (22%), Positives = 203/485 (41%), Gaps = 43/485 (8%)
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
EF V +C N N+ I + C + R I + V + +
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+L + + K+ PN YI +II + C IC A E +R Q + + V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354
Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+L++ D++ + + M + D+ +Y ++ C G+ V A +++ E
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ KG L+ D T++ ++ + A + A +V M+ AG +PN +T+++LI+ G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
++ A L EM + G +PN N ++ ++ + A +L V E
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
N D ++ D + + K +PT T+N+LM C
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
+ L+N M G++PN ++ L+ N++ A I K M G+ PD Y +
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 638
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650
K +++ +K+A+ LF+EMK ++ TY L++ + E ++ V+ M +
Sbjct: 639 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE---VFDQMRRE 695
Query: 651 GYKAN 655
G A+
Sbjct: 696 GLAAD 700
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| 225439759 | 842 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.946 | 0.625 | 0.0 | |
| 224068636 | 828 | predicted protein [Populus trichocarpa] | 0.915 | 0.939 | 0.606 | 0.0 | |
| 449448705 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.976 | 0.581 | 0.0 | |
| 449521499 | 855 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.977 | 0.971 | 0.574 | 0.0 | |
| 30679784 | 852 | pentatricopeptide repeat-containing prot | 0.98 | 0.977 | 0.546 | 0.0 | |
| 39104565 | 852 | unknown protein [Arabidopsis thaliana] | 0.98 | 0.977 | 0.545 | 0.0 | |
| 255568444 | 786 | pentatricopeptide repeat-containing prot | 0.874 | 0.945 | 0.593 | 0.0 | |
| 356572391 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.982 | 0.536 | 0.0 | |
| 357510555 | 829 | Pentatricopeptide repeat-containing prot | 0.889 | 0.911 | 0.531 | 0.0 | |
| 7413558 | 798 | putative protein [Arabidopsis thaliana] | 0.911 | 0.971 | 0.486 | 0.0 |
| >gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera] gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/817 (62%), Positives = 624/817 (76%), Gaps = 20/817 (2%)
Query: 40 LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
L +S+S P + S S+ LLS VR DL++ Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36 LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91
Query: 98 VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
++S +S+ +E+V++GI +REGR+ CVV VL+K+++LG+ PLELFDGS +L
Sbjct: 92 ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146
Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
L EC+R+L+ G+VE V L+E+L+ F PVK+L E +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A ILFC + EFGKKRDL SAL A++ASK+ L PNMY RT+IDVCG+C Y KSR
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
IYE+L +Q +T NIYVFNSLMNVN HDL +T VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
SW S+ Q +E K + IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503
Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++ILK MRE
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREA 563
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637
G+ PDVVAYTTAIK CV SK LK AFSLF EMK YQIQPNLVTY TLLRARSRYGSLHEV
Sbjct: 564 GIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEV 623
Query: 638 QQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLL 697
QQCLA+YQ M KAGYK+ND YLKELIEEWCEGVIQD N NQ + + R + RPQSLLL
Sbjct: 624 QQCLAIYQHMRKAGYKSNDYYLKELIEEWCEGVIQDNNLNQSKFSSVNRADWGRPQSLLL 683
Query: 698 EKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNK 757
EKVA HLQKS AE+LAIDL+GLT+VEARI+VLAVLRM+KENY LG P+KDD++I+LG K
Sbjct: 684 EKVAAHLQKSVAESLAIDLQGLTQVEARIVVLAVLRMIKENYILGHPIKDDILIILGIKK 743
Query: 758 VNKIQAKHDLEVKDAITKLLQDDLGLKVFLDGPSIQ-HKNAHMQKLLDSESNMAETLH-- 814
V+ +H+ VK AI KLLQD+LGL+V GP I K ++ S+ + E L
Sbjct: 744 VDANLVEHESPVKGAIIKLLQDELGLEVAFAGPKIALDKRINLGGPPGSDPDWQEALGRN 803
Query: 815 ---IELKSSTRRPKILQRLKVPKKSLHHWLQRRVGST 848
EL+SSTRRP +LQR KV +KSL HWLQRRVG+T
Sbjct: 804 RLPTELESSTRRPAVLQRFKVTRKSLDHWLQRRVGAT 840
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/808 (60%), Positives = 595/808 (73%), Gaps = 30/808 (3%)
Query: 49 IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
IP VHS LLST+ + SS DY+A++ASKLA+DGRL++F MI ESV+ S
Sbjct: 45 IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104
Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
S F + LS+ VA GI K++++G +DCVV LKK ELGV+ L+ DG LLK E R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
+++ G+VE V +ME L F KEL + I+++CV+K + +A+RYA I P IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN + EFG+K L SAL AYD +K LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284
Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
++ V N+YVFNSLMNVNAHDL +T V+KNMQ LGV AD+ASYNILLKACC+AG LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
++IY EVK LE+ VLKLDVFTY IVK+FADAK WQMALK+KEDMLS+GVTPN WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404
Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
Q D+ GN D I EH K N VPNSH+ +F K+F F PT TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520
Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+QILK MR G+ PDV
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDV 580
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643
VAYTTAIKVCV +K LK AFSLF EMK QI PNLVTY TLLRAR+RYGSL EVQQCLA+
Sbjct: 581 VAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAI 640
Query: 644 YQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703
YQDM KAGYK+ND YLK+LIEEWCEGVIQD NQ QG C+RT+ RP+SLLLEKVA H
Sbjct: 641 YQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGFASCKRTDLGRPRSLLLEKVAAH 700
Query: 704 LQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQA 763
LQ + +ENLAIDL+GLTKVEARI+VLAVLRM+KENY+LG VK+D+ I L +KV+ +
Sbjct: 701 LQNNISENLAIDLQGLTKVEARIVVLAVLRMIKENYTLGYSVKEDMWITLDVSKVDP-AS 759
Query: 764 KHDLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKL-LDSESNMAETLHIELKSSTR 822
K D EVK+AI +LL+++LGL+V + P H+ + DS+S++
Sbjct: 760 KRDSEVKNAIIELLRNELGLEVLVAVP------GHLDDIKTDSKSSL------------- 800
Query: 823 RPKILQRLKVPKKSLHHWLQRRVGSTGR 850
P + QRLKV +KSLH WLQRR G+ R
Sbjct: 801 DPVVTQRLKVRRKSLHEWLQRRAGAIRR 828
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/861 (58%), Positives = 625/861 (72%), Gaps = 32/861 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRND-------YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNV N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
+ +TD +N++ + NT PN + H SF F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588
YY KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTT
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTT 591
Query: 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648
AIKVCV K K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+YQDM
Sbjct: 592 AIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMR 651
Query: 649 KAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSA 708
K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HLQKS
Sbjct: 652 KSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHLQKSF 711
Query: 709 AENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLE 768
AE+L IDL+ LTKVEARI+VLAVLRM+KENY+LG VKDD+ I+L NKV + E
Sbjct: 712 AESLTIDLQELTKVEARIVVLAVLRMIKENYALGESVKDDIFIILEVNKVETDLVPQNFE 771
Query: 769 VKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESN-MAETLHIEL-----KSSTR 822
V+DAIT+LLQD+LGL+V GP+I + K+ +SES+ ++ T ++ K TR
Sbjct: 772 VRDAITRLLQDELGLEVLPTGPTIA-----LDKVPNSESSKISHTTKLKGTMGRNKYFTR 826
Query: 823 RPKILQRLKVPKKSLHHWLQR 843
+P +QRLKV KKSL WLQR
Sbjct: 827 KPADVQRLKVTKKSLQDWLQR 847
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/865 (57%), Positives = 621/865 (71%), Gaps = 34/865 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRND-------YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ +TD + + + T PN + H SF +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTTAI
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAI 593
Query: 591 KVCVRSKRL------KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
KV + L K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+Y
Sbjct: 594 KVSIPLAVLVLKXNWKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIY 653
Query: 645 QDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHL 704
QDM K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HL
Sbjct: 654 QDMRKSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHL 713
Query: 705 QKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAK 764
QKS AE+L IDL+ LTKVEARI+VLAVLRM+KENY+LG VKDD+ I+L NKV
Sbjct: 714 QKSFAESLTIDLQELTKVEARIVVLAVLRMIKENYALGESVKDDIFIILEVNKVETDLVP 773
Query: 765 HDLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESN-MAETLHIEL-----K 818
+ EV+DAIT+LLQD+LGL+V GP+I + K+ +SES+ ++ T ++ K
Sbjct: 774 QNFEVRDAITRLLQDELGLEVLPTGPTIA-----LDKVPNSESSKISHTTKLKGTMGRNK 828
Query: 819 SSTRRPKILQRLKVPKKSLHHWLQR 843
TR+P +QRLKV KKSL WLQR
Sbjct: 829 YFTRKPADVQRLKVTKKSLQDWLQR 853
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic; Flags: Precursor gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/855 (54%), Positives = 605/855 (70%), Gaps = 22/855 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEV 769
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G V DD++I++G ++ N + K ++ V
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITV 780
Query: 770 KDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQR 829
++A+ KLL+D+L L V G ++AH D E N + I SSTRRP IL+R
Sbjct: 781 QEALVKLLRDELSLVVLPAGQRNIIQDAHCVDDADQE-NTKSFVSI---SSTRRPAILER 836
Query: 830 LKVPKKSLHHWLQRR 844
L V K SL+ WLQRR
Sbjct: 837 LMVTKASLYQWLQRR 851
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/855 (54%), Positives = 605/855 (70%), Gaps = 22/855 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ ++Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGRSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEV 769
NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G V DD++I++G ++ N + K ++ V
Sbjct: 721 GNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITV 780
Query: 770 KDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQR 829
++A+ KLL+D+L L V G ++AH D E N + I SSTRRP IL+R
Sbjct: 781 QEALVKLLRDELSLVVLPAGQRNIIQDAHCVDDADQE-NTKSFVSI---SSTRRPAILER 836
Query: 830 LKVPKKSLHHWLQRR 844
L V K SL+ WLQRR
Sbjct: 837 LMVTKASLYQWLQRR 851
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/746 (59%), Positives = 548/746 (73%), Gaps = 3/746 (0%)
Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
+S L + +A GI K++RE +D VV L ++LG+ P +LFD + LLK EC R+++
Sbjct: 41 SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100
Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
G +E + LME L + +KEL E R+++LCV++ + +LA+RYA + P IL C+
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160
Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
V++FGKK DL SAL AY+A +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220
Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
E K LE G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W S+ Q
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
DY+ D IS+ H + I PN NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460
Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587
DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+QILK MR G+ PDV+AYT
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYT 520
Query: 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
TAIKV V SK LK AFSLF EMK YQ++PNLVTY TLLRAR+RYGSL EVQQCLA+YQDM
Sbjct: 521 TAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDM 580
Query: 648 WKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKS 707
KAGYK+ND YLK+LIEEWCEGVIQD +Q Q + C+R RP SLLLEKVA HL +
Sbjct: 581 RKAGYKSNDNYLKQLIEEWCEGVIQDNDQCQDDFKPCKRAEFGRPHSLLLEKVAAHLHHN 640
Query: 708 AAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDL 767
AE+L++DL+GLTKVEARI+VLAVLRM+KENY G VKDD+ I LG +KV+ + A
Sbjct: 641 VAESLSVDLQGLTKVEARIVVLAVLRMVKENYIQGHLVKDDMSITLGIDKVDVLPATQKA 700
Query: 768 EVKDAITKLLQDDLGLKVFLDGPSIQHK-NAHMQKLLDSESNMAETLHIE--LKSSTRRP 824
EVKDAI KLL ++LGL+V + P ++ L+S N +++ E SS RRP
Sbjct: 701 EVKDAIFKLLHNELGLEVLIVVPRYTADLETDLEIPLNSYQNWSKSSGRENIRVSSARRP 760
Query: 825 KILQRLKVPKKSLHHWLQRRVGSTGR 850
+LQRLKV + SLH WLQR+ G+ R
Sbjct: 761 LVLQRLKVTRNSLHSWLQRKAGALRR 786
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/852 (53%), Positives = 585/852 (68%), Gaps = 55/852 (6%)
Query: 3 VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
V+ GSS + + +T + H KP P + KL P +S+ ++S AL
Sbjct: 5 VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53
Query: 62 TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
A +A D +L +EF ++ E + S ++ E++A +
Sbjct: 54 ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93
Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
+ IR ++ V+ L K+ ++ +GS ++ EC RL+ VE V LMEV
Sbjct: 94 LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151
Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
L F++ ++EL + I++ CV + LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211
Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
L+AY+ASKKHL++PNMYI R ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N+HDL +TL +Y+NMQ LG+ DM SYNILLKACC+AG LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW K + GE Y+ S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
N+ +T+ PN + NSH +F +RF F PTTTTYNIL+KAC TDYY KAL+ EM
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
TVGLSPN ISW+ILID CG S NVEGA++ILK M + G+ PDV+AYTTAIKVCV SK
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFM 565
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
QA +L+EEMK YQI+PN VTY TLL+ARS+YG LHEVQQCLA+YQDM KAGYK ND YL+
Sbjct: 566 QALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLE 625
Query: 661 ELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLT 720
ELIEEWCEGVIQ+ + QGE + ++ S+RPQSLLLEK+A HL K A+ LAID++GLT
Sbjct: 626 ELIEEWCEGVIQNNREKQGEFSSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLT 685
Query: 721 KVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQDD 780
KVEAR++VLAVLRM+KENY LG V DD++I++G KV++ +KH LEV++AI KLL+++
Sbjct: 686 KVEARLVVLAVLRMIKENYGLGHSVNDDILIIIGATKVDENPSKHILEVQEAIIKLLRNE 745
Query: 781 LGLKVFL--------DGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQRLKV 832
LGL+VF D ++++ N L E+ E L TRRP +L RLKV
Sbjct: 746 LGLEVFPAKTRLALSDTANLEYPNFSN---LSIEAQPGEN---ALGFQTRRPGVLVRLKV 799
Query: 833 PKKSLHHWLQRR 844
KKSL+ WL R+
Sbjct: 800 TKKSLYRWLHRK 811
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/809 (53%), Positives = 562/809 (69%), Gaps = 53/809 (6%)
Query: 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
+LS RN+ + + + L L+EF ++ + S+ +V E++A+ ++ I+
Sbjct: 40 NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86
Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
+ + V+ L K+ G++ + L + NEC ++ G +E V LMEVL F+
Sbjct: 87 DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144
Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
L + +L + I++ C+ LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204
Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
A KK+L PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
++L +Y+NMQKLG+ DMASYNILLKACC+AG +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW SK V L E + SN E
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
++T P + +SH SF +RF F PTTTTYNIL+KAC T+YY KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN ISW+ILI+ CG S NV+G ++IL+ M + G+ PDV++YTTAIKVCV SK QA +L
Sbjct: 499 PNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTL 558
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
+ EMK Y PNLVTY TLLRARS+YGSL EVQQ LA+YQDM KAGYK+ND YL+ELIEE
Sbjct: 559 YREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAGYKSNDYYLEELIEE 618
Query: 666 WCEGVIQDKNQNQG-EVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEA 724
WCEGVIQD + +G E + +++ +RPQSLLLEK+A HL K A+ LAID++GLTKVEA
Sbjct: 619 WCEGVIQDNEEYEGEEFSSSKKSEIERPQSLLLEKIASHLLKRVADILAIDVQGLTKVEA 678
Query: 725 RIIVLAVLRMMKENYSL---------------------GVPVKDDLMIVLGPNKVNKIQA 763
R+++LAVLRM+KENY++ G VKDD++I++G K ++ +
Sbjct: 679 RLVILAVLRMIKENYAIVSKLRPQKNVQLNMLLTVLNTGHSVKDDILIIIGATKADENPS 738
Query: 764 KHDLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSE-SNMA-------ETLHI 815
K L V++A+ KLL ++LGL+ + + +H KL + E SN+ L
Sbjct: 739 KEILVVQEAMVKLLTNELGLEAL--PATTRFAPSHTPKLQNPEFSNLTIEALPGENALPT 796
Query: 816 ELKSSTRRPKILQRLKVPKKSLHHWLQRR 844
+ TRRP +LQRLKV KKSLH WLQR+
Sbjct: 797 SMGFHTRRPAVLQRLKVTKKSLHRWLQRK 825
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/859 (48%), Positives = 549/859 (63%), Gaps = 84/859 (9%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIR + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 586
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK EM+ YQI+PN DM
Sbjct: 587 IK----------------EMRRYQIKPNW---------------------------DMRN 603
Query: 650 AGYKAN----DTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQ 705
AGY+ T++ L + VIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q
Sbjct: 604 AGYEQFLLLWSTFI-SLPDGSATRVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQ 662
Query: 706 KSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKH 765
+ A NLAIDL+GLTK+EAR++VLAVLRM+KE+Y G V DD++I++G ++ N + K
Sbjct: 663 ERTAGNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQ 722
Query: 766 DLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPK 825
++ V++A+ KLL+D+L L V G ++AH D E N + I SSTRRP
Sbjct: 723 EITVQEALVKLLRDELSLVVLPAGQRNIIQDAHCVDDADQE-NTKSFVSI---SSTRRPA 778
Query: 826 ILQRLKVPKKSLHHWLQRR 844
IL+RL V K SL+ WLQRR
Sbjct: 779 ILERLMVTKASLYQWLQRR 797
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| TAIR|locus:2151236 | 852 | AT5G02830 [Arabidopsis thalian | 0.901 | 0.899 | 0.571 | 1.7e-233 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.385 | 0.598 | 0.272 | 1.9e-26 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.472 | 0.566 | 0.255 | 9.9e-24 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.356 | 0.506 | 0.245 | 2.5e-18 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.536 | 0.556 | 0.215 | 2.9e-23 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.495 | 0.442 | 0.230 | 3e-23 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.421 | 0.569 | 0.244 | 9e-23 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.428 | 0.690 | 0.239 | 1.4e-22 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.429 | 0.632 | 0.244 | 3.2e-22 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.485 | 0.371 | 0.229 | 3.6e-22 |
| TAIR|locus:2151236 AT5G02830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2252 (797.8 bits), Expect = 1.7e-233, P = 1.7e-233
Identities = 444/777 (57%), Positives = 571/777 (73%)
Query: 72 DYYADMASKLAKDGRLEEFAMIXXXXXXXXG-NVSKFASMLSLEMVASGIVKSIREGRID 130
+YYAD ASKLA+DGR+E+ A+I G NV++FASM+ ++++ GI ++R+G+I+
Sbjct: 82 EYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIE 141
Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
VV LK++ ++G+APL+L D S KL++ + + + +S +VE + LME+L +KE
Sbjct: 142 SVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKE 201
Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
L + F +V+ CV + LAIRYAC++P ++L C + FGKK D+VS + AY+A K+
Sbjct: 202 LVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACKQI 261
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIYV NSLMNVN+HDL +TL+
Sbjct: 262 LDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLK 321
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K +E+ G+LKLD FTY TI+
Sbjct: 322 VYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTII 381
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAGLVEQA HLFEEML +GCE
Sbjct: 382 KVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCE 441
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
PNSQC NILL ACVEACQ+DRAFRLF+SW S +L D G T + +++
Sbjct: 442 PNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGP 501
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
S+ N + NS Y KRF FKPTT TYNIL+KAC TDYYR K LM+EM+++GLSPN
Sbjct: 502 GSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPN 558
Query: 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607
I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTAIK+C +K LK AFSLFE
Sbjct: 559 QITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFE 618
Query: 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667
EM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM AGYK ND +LKELIEEWC
Sbjct: 619 EMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWC 678
Query: 668 EGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARII 727
EGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A NLAIDL+GLTK+EAR++
Sbjct: 679 EGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIEARLV 738
Query: 728 VLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQDDLGLKVFL 787
VLAVLRM+KE+Y G V DD++I++G ++ N + K ++ V++A+ KLL+D+L L V
Sbjct: 739 VLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITVQEALVKLLRDELSLVVLP 798
Query: 788 DGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQRLKVPKKSLHHWLQRR 844
G ++AH D E N + I SSTRRP IL+RL V K SL+ WLQRR
Sbjct: 799 AGQRNIIQDAHCVDDADQE-NTKSFVSI---SSTRRPAILERLMVTKASLYQWLQRR 851
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 95/349 (27%), Positives = 171/349 (48%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLINGL---CLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F +R T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LF------REMSQR-GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 9.9e-24, P = 9.9e-24
Identities = 115/450 (25%), Positives = 197/450 (43%)
Query: 221 DILFCN-FVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D+ N + F K D AL+ A LS+ + +II G +++ A+
Sbjct: 268 DVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLV-SIISALADSGRTLEAEAL 326
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+LR + +N+L+ V LK + M+K GV D +Y++L+ A
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
AG A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P
Sbjct: 387 AGRWESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+ ++ +I+ ++ AM F+ ML G EP+ N L+ C C+ R
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLID-C--HCKHGR----- 494
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFD--KRF--S 510
+ E ++ ME + T N + NS+ +D KR
Sbjct: 495 --------HIVAEEMFEA-------MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGK 539
Query: 511 FKPTTTTYNILMKACCTDYYRVKALMN-------EMRTVGLSPNHISWTILIDACGGSGN 563
K N++ D Y N EM++VGL P+ + LI+A G
Sbjct: 540 MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGL 599
Query: 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E A+ ++M DG+ P ++A + I +R +AF++ + MK ++P++VTY T
Sbjct: 600 SEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTT 659
Query: 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653
L++A R +V VY++M +G K
Sbjct: 660 LMKALIRVDKFQKVP---VVYEEMIMSGCK 686
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 80/326 (24%), Positives = 149/326 (45%)
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ + ++ G + D+ +YN+++ C AG EI + L+ V DV TY+TI
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAG------EINNALSVLDRMSVSP-DVVTYNTI 210
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
++ D+ + A++V + ML P+ IT++ LI A C ++G V AM L +EM G
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRG 269
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ N+L+ + + D A + S Q + T I +
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV------ITHNII------LR 317
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
S+ +T ++ + R F P+ T+NIL+ C +A+ + +M G P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606
N +S+ L+ ++ A++ L+ M G PD+V Y T + + +++ A +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 607 EEMKHYQIQPNLVTYITLLRARSRYG 632
++ P L+TY T++ ++ G
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAG 463
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| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 105/488 (21%), Positives = 228/488 (46%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + + + + L A+ + + + P+++ T++ G + +I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R+ NI FN+ + + + KFT ++++ + G+ D+ ++N LL + G
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+ E+ G K ++ G + + T++T++ ++ ++ A+ V ML AGVTP+
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T+++++ A A G+ EQ+ + EM C+PN LL A + L S
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG----KEIGLMHS- 580
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKPTTTT 517
L++ E Y G + + + K + + + +P + +S +R F P TT
Sbjct: 581 -LAE------EVYSGVIEPRAVLL-KTLVLVCSKCDLLPEAERAFSELKER-GFSPDITT 631
Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575
N ++ KA +++ M+ G +P+ ++ L+ S + + +IL+ +
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635
G+ PD+++Y T I R+ R++ A +F EM++ I P+++TY T + + Y +
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS---YAADS 748
Query: 636 EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQS- 694
++ + V + M K G + N +++ +C+ + K++ + V R + P+
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK--LNRKDEAKLFVEDLRNLDPHAPKGE 806
Query: 695 --LLLEKV 700
LLE++
Sbjct: 807 DLRLLERI 814
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| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 103/446 (23%), Positives = 201/446 (45%)
Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
+ ++ + +P + I T++D + D K +++ L+ T + + L+N+
Sbjct: 439 EMEEEGIDAP-IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 305 LKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
K + LEV + M++ GV ++ +Y++++ + A ++ ++ K +K D
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPD 553
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V Y+ I+ F A++ ++M P T T+ +I+ A +G + +++ +F+
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
M + GC P N L+ VE Q ++A + TL+ V+ E +I
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG--VSANEH---TYTKIM-- 666
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR 540
+ S+ +T +++ TY L+KACC AL EM
Sbjct: 667 --QGYASVGDTGKAF--EYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
+ N + ILID G+V A +++ M+++G+ PD+ YT+ I C ++ +
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMN 781
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
+A EEM+ ++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 782 RATQTIEEMEALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPDKAVYH 838
Query: 661 ELIEEWCEGV-IQDKNQNQGEVTLCR 685
L+ I + G +T+C+
Sbjct: 839 CLLTSLLSRASIAEAYIYSGVMTICK 864
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 9.0e-23, P = 9.0e-23
Identities = 95/388 (24%), Positives = 183/388 (47%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
P+++ T+++ G+C GD + ++ + + + ++ ++ ++++ N ++ L
Sbjct: 218 PDLFTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M G+ ++ +YN L++ C G A + ++ +E K + +V T+S +
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSAL 331
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
PN N L++ +A + + LFR +S+ + GNT + + Q
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFRE--MSQRGLV------GNTVTYNTLI----QG 439
Query: 490 ITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRV-KALM--NEMRTVGL 544
+ + + F K S P TY+IL+ C Y ++ KAL+ ++ +
Sbjct: 440 LFQAGDC--DMAQKIFKKMVSDGVPPDIITYSILLDGLCK-YGKLEKALVVFEYLQKSKM 496
Query: 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604
P+ ++ I+I+ +G VE + + G+ P+V+ YTT I R ++A +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 605 LFEEMKHYQIQPNLVTYITLLRARSRYG 632
LF EMK PN TY TL+RAR R G
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDG 584
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| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 94/393 (23%), Positives = 184/393 (46%)
Query: 254 PNMYICRTIIDVCGIC-GDYMK-SRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
P++ ++I+ G C G+ M+ + ++ + + ++ ++ ++++ N H + +
Sbjct: 140 PDIVTFTSLIN--GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH-VNYA 196
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
L ++ M+ G+ D+ Y L+ C +G A + + K +K DV T++
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM----TKRKIKPDVITFNA 252
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ F + A ++ +M+ + PN T++SLIN G V++A +F M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ L+ + + D A ++F + +S+ + GNT + + Q
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLT------GNTITYTTLIQGFGQ 364
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEM--RTV-G 543
PN V +S R P TYN+L+ C + KALM +M R + G
Sbjct: 365 --VGKPN-VAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG 420
Query: 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++PN ++ +L+ +G +E AL + + MR+ M ++ YT I+ ++ ++K A
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636
+LF + ++PN+VTY T++ R G HE
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHE 513
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 98/401 (24%), Positives = 183/401 (45%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D G+ G +KSR + +I+ FN L++ A KF L + + MQ+LG+
Sbjct: 68 DAIGLFGGMVKSRPLP----------SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +YNIL+ C LA + G++ L G + + T S+++ + K
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKL---GY-EPSIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D AF L +K + + Y D + H+D + N
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHED-----DALNL----- 282
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDAC 558
++ + + +P TY+ L+ C +Y R L+++M ++PN +++ LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLISCLC-NYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
G + A ++ M + + PD+ Y++ I RL +A +FE M PN+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND-TY 658
VTY TL+ + + + + ++++M + G N TY
Sbjct: 401 VTYNTLING---FCKAKRIDEGVELFREMSQRGLVGNTVTY 438
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 3.6e-22, P = 3.6e-22
Identities = 102/444 (22%), Positives = 193/444 (43%)
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
K R A+ Y P++ +++ G D + +++ + + N+Y
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
F + V A + E+ K M G D+ +Y +L+ A C A A+E++ ++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K G K D TY T++ F+D + + +M G P+ +T++ L++A
Sbjct: 320 K----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-TLSKTQVALG 469
AG +A + M G PN N L+ + + D A LF + +L A
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 470 E----DYDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
DY G + D +S +E +K T PN + + Y+ L KA
Sbjct: 436 YIVFIDYYGKSGDSVSALETFEKMK---TKGIAPNIVACN----------ASLYS-LAKA 481
Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584
D K + ++ +GL P+ +++ +++ G ++ A+++L M E+G PDV+
Sbjct: 482 G-RDR-EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
+ I ++ R+ +A+ +F MK +++P +VTY TLL + G ++Q+ + ++
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG---KIQEAIELF 596
Query: 645 QDMWKAGYKANDTYLKELIEEWCE 668
+ M + G N L + C+
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCK 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYL7 | PP361_ARATH | No assigned EC number | 0.5461 | 0.98 | 0.9776 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00023063001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (818 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 850 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
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Score = 119 bits (299), Expect = 2e-27
Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 63/362 (17%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
N++ +ID C G K+ Y +RS+NV + VFN+L++ A D F
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF-- 562
Query: 310 EVYKNM--QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+V M + + D + L+KAC AG A+E+Y + KG ++ Y+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YT 618
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
V + W AL + +DM GV P+ + +S+L++ +AG +++A + ++ +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
G + + + L+ AC A + +A L+ K
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------ 714
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
+PT +T N L+ A C KAL ++EM+ +GL
Sbjct: 715 -----------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN I+++IL+ A + + L +L +EDG+ P++V +C+R R ++A +L
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809
Query: 606 FE 607
E
Sbjct: 810 GE 811
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-24
Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 58/350 (16%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++++N+L+ C + Q+I G V L + LK D Y+T++ A +
Sbjct: 437 LSTFNMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
+V +M++AGV N T+ +LI+ CA AG V +A + M +P+ N L+
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
AC ++ DRAF D ++ M+ + P
Sbjct: 551 ACGQSGAVDRAF-----------------------DVLAEMKAE------THP------- 574
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
P T LMKAC R K + + + +TI +++C
Sbjct: 575 ---------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619
G+ + AL I M++ G+ PD V ++ + V + L +AF + ++ + I+ V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669
+Y +L+ A S + ++ L +Y+D+ + + + LI CEG
Sbjct: 686 SYSSLMGACS---NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 103/430 (23%), Positives = 169/430 (39%), Gaps = 83/430 (19%)
Query: 269 CGDYMKSRAIYE-----DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
CGD + +R +++ D S N ++ Y N LE++ M++L V D
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-------LELFFTMRELSVDPD 287
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ + ++ AC L G+ L +E++G V K +DV +++++++ W A
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
KV M T + ++W+++I+ GL ++A+ + M Q P+ +L AC
Sbjct: 344 KVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 444 VEACQFDRAFRLF----RSWTLSKTQVA--LGEDY------DGNTDRISNMEHKDKQSIT 491
D +L R +S VA L E Y D + N+ KD S T
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 492 NTPN-FVPNSHYSSFDKRFSF-------KPTTTTYNILMKACCTDYYRVKALM------- 536
+ N F+ F KP + T + AC R+ ALM
Sbjct: 460 SIIAGLRLN--NRCFEALIFFRQMLLTLKPNSVTLIAALSACA----RIGALMCGKEIHA 513
Query: 537 NEMRT-VGLS---PNHI-------------------------SWTILIDACGGSGNVEGA 567
+ +RT +G PN + SW IL+ G A
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLR 626
+++ M E G++PD V + + + C RS + Q F M+ Y I PNL Y ++
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 627 ARSRYGSLHE 636
R G L E
Sbjct: 634 LLGRAGKLTE 643
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
P+ +T+++LI+ G VE+A+ LF EM + G +PN +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627
PDVV Y T I + ++++A LF EMK I+PN+ TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 71/223 (31%)
Query: 513 PTTTTYNILMKACCTDY-----YRVKALM------------------------------- 536
PT +T+N+LM C + RV L+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 537 -NEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
+EM G+ N ++ LID C +G V A IMR + PD V + I C +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 596 SKRLKQAFSLFEEMKH--YQIQPNLVTYITLL----------RARSRYGSLHE------- 636
S + +AF + EMK + I P+ +T L+ RA+ Y +HE
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 637 ------VQQC---------LAVYQDMWKAGYKANDTYLKELIE 664
V C L++Y DM K G K ++ + L++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 523 KAC-----CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
KAC + +R L+ P ++ +L+ C S +++GAL++L++++E
Sbjct: 414 KACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634
G+ D YTT I C +S ++ F +F EM + ++ N+ T+ L+ +R G +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 1e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
DV TY+T++ + + ALK+ +M G+ PN T+S LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 7e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
P+ +++ LID G VE AL++ M++ G+ P+V Y+ I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDL-KFTLEVY 312
+ ++ +ID+ CGD +R +++ + + +NS++ A H + L +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVK 371
M+ GV D +++I+++ A++ + G ++ LD+ + +V
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPLDIVANTALVD 368
Query: 372 VFADAKWWQM--ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ KW +M A V + M P N I+W++LI N G +A+ +FE M+
Sbjct: 369 LYS--KWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
G PN +L AC + ++ + +F+S +
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 44/328 (13%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
LE Y M++ V D + +L AC G+ + +++ + E KG++ V +
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH---ELAERKGLISYVVVANAL 430
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQA 427
I ++++ K AL+V ++ + I+W+S+I N E A+ F +ML
Sbjct: 431 I-EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFE-ALIFFRQML-L 483
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKD 486
+PNS + L A + AC A + + +G + + N + ++ +
Sbjct: 484 TLKPNS----VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRC 537
Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR------VKALMNEMR 540
+ F NSH + ++NIL+ T Y L N M
Sbjct: 538 GRMNYAWNQF--NSH----------EKDVVSWNILL----TGYVAHGKGSMAVELFNRMV 581
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRL 599
G++P+ +++ L+ AC SG V L+ M E ++P++ Y + + R+ +L
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641
Query: 600 KQAFSLFEEMKHYQIQPNLVTYITLLRA 627
+A++ +M I P+ + LL A
Sbjct: 642 TEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P TYN L+ C L NEM+ G+ PN +++ILID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 68/372 (18%), Positives = 154/372 (41%), Gaps = 36/372 (9%)
Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
CG + +R +++++ +N + + +++ V+A + + +++ M + G A+ +
Sbjct: 171 CGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
+ ++L+A G+ Q+++ V G D F ++ +++ + A V
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIEDARCVF 282
Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
+ M T+ W+S++ A G E+A+ L+ EM +G + +I+++
Sbjct: 283 DGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
+ A + + D NT + + K V FD
Sbjct: 339 ALLEHA----KQAHAGLIRTGFPLDIVANTALV---DLYSKWGRMEDARNV-------FD 384
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
+ + ++N L+ KA + M G++PNH+++ ++ AC SG
Sbjct: 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 565 EGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E +I + M E+ + P + Y I++ R L +A+++ ++ +P + +
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAA 499
Query: 624 LLRARSRYGSLH 635
LL A + +L
Sbjct: 500 LLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++ +N+L++ ++ L+++ M+K G+ ++ +Y+IL+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+T+++LI+ AG VE+A+ LF+EM + G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G+ P+ +T+++LI+ AG V++A+ L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 100/494 (20%), Positives = 195/494 (39%), Gaps = 73/494 (14%)
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---- 220
L G++E + L+E ++E R+PV E D + +LC K V R +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
+ + FVR FG +LV A + + +++ ++ G + ++
Sbjct: 120 GVRLGNAMLSMFVR-FG---ELVHAWYVF----GKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
+Y + V ++Y F ++ DL EV+ ++ + G D+ N L+
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
G+ V A+ ++ + + D +++ ++ + + L++ M
Sbjct: 232 YVKCGDVVSARLVF--------DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
V P+ +T +S+I+AC G + +++ G + CN L+Q + + A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-----PNFVPNSH---YSSF 505
++F S ME KD S T N +P+ Y+
Sbjct: 344 KVF-----------------------SRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 506 DKRFSFKPTTTTYNILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTI----LIDACGG 560
++ + P T ++ AC C V ++E+ IS+ + LI+
Sbjct: 381 EQD-NVSPDEITIASVLSACACLGDLDVGVKLHEL---AERKGLISYVVVANALIEMYSK 436
Query: 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620
++ AL++ + E DV+++T+ I + R +A F +M ++PN VT
Sbjct: 437 CKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVT 491
Query: 621 YITLLRARSRYGSL 634
I L A +R G+L
Sbjct: 492 LIAALSACARIGAL 505
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+T++SLI+ AG +E+A+ LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
T+++L+ A A AG + A+ + EEM +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
+++ LID +G VE AL++ K M+E G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 79/357 (22%)
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
LEA L TY +V+ K + V + S+G P+ + ++ G
Sbjct: 113 LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-W------------ 459
++ A LF+EM E N ++ V+A + AF LFR W
Sbjct: 173 MLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--------YSSF----DK 507
+ + LG G + V ++ YS D
Sbjct: 229 VMLRASAGLGSARAG----------QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 508 RFSF----KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGS 561
R F + TT +N ++ Y +AL EMR G+S + +++I+I
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK--------------------- 600
+E A Q + G D+VA T + + + R++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 601 ----------QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
+A +FE M + PN VT++ +L A RY L +Q ++Q M
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGL--SEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
G+ PDVV Y T I R+ R+ +A L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
+ Y + ++ A ++ EEMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617
V Y T I ++ R+++A LF+EMK I+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579
+++ LI +G +E AL++ K M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ N L+ + + + A +LF + M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-----------------------NEM-------- 29
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
K+ KP TY+IL+ C
Sbjct: 30 ----------------KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP 581
++ L+ A +G+ + AL +L+ M+ G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
TY+T++ A + AL++ ++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.32 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.26 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.26 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.23 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.22 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.05 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.98 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.65 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.52 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.35 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.33 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.22 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.06 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.05 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.98 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.89 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.88 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.82 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.56 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 97.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.38 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.36 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.16 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.14 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.13 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.02 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 97.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.88 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.63 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.32 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.49 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.46 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.11 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.84 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.82 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.78 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.59 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.58 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.47 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.41 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.34 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 91.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 91.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.55 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 89.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 88.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.86 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.52 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.34 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.32 | |
| COG2840 | 184 | Uncharacterized protein conserved in bacteria [Fun | 86.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 83.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.34 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.91 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.87 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=646.05 Aligned_cols=613 Identities=21% Similarity=0.349 Sum_probs=523.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
...|..+...|++.|++++|+++|+.|.+.+.. ++.. ....++..+.+.|.+++|..+|+.|.. |+..
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-------~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-------YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-------HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 677777888888888888888888888887643 2211 122334456677888888888887762 5543
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
+++.++..| ++.|++++|.++++.|.+.++.|+ ..+|+.||.
T Consensus 439 ----Tyn~LL~a~---~k~g~~e~A~~lf~~M~~~Gl~pD-------------------------------~~tynsLI~ 480 (1060)
T PLN03218 439 ----TFNMLMSVC---ASSQDIDGALRVLRLVQEAGLKAD-------------------------------CKLYTTLIS 480 (1060)
T ss_pred ----HHHHHHHHH---HhCcCHHHHHHHHHHHHHcCCCCC-------------------------------HHHHHHHHH
Confidence 355555554 357888888888888888776554 378999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~ 307 (850)
+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+++ |++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 69999
Q ss_pred HHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHH
Q 003082 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (850)
Q Consensus 308 a~~l~~~m~~--~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l 385 (850)
|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.|.+ .| +.|+..+|+++|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999976 68999999999999999999999999999999987 44 789999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccc
Q 003082 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (850)
Q Consensus 386 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~ 465 (850)
|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|...
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--- 713 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--- 713 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcC
Q 003082 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g 543 (850)
|+.||..+||++|.+|++ +.++|.++|++|.+.|
T Consensus 714 --------------------------------------------g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 714 --------------------------------------------KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred --------------------------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 368999999999999985 6899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 003082 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (850)
Q Consensus 544 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~-------------------g~~~ 600 (850)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976432 1 2346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhhcccc
Q 003082 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (850)
Q Consensus 601 ~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 680 (850)
+|..+|++|.+.|+.||..||+.+|.++++.+..+. +..++++|...+..|+..+|++||+++++-
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~----------- 895 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY----------- 895 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-----------
Confidence 899999999999999999999999988878887665 666888898899999999999999988531
Q ss_pred hhhhhhcCCCchhHHHHHHHHHHHhhhhh---hhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE-------
Q 003082 681 VTLCRRTNSQRPQSLLLEKVAVHLQKSAA---ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLM------- 750 (850)
Q Consensus 681 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~------- 750 (850)
.+++..++.|+...++.++.. ..|.+|++.|+.++|...++.||+.++.+...|..+|...+
T Consensus 896 --------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~ 967 (1060)
T PLN03218 896 --------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKK 967 (1060)
T ss_pred --------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccc
Confidence 134677888888888777663 35889999999999999999999999999999999999888
Q ss_pred -EEecCCcccccCcccchHHHHHHHHHhhhcccceEeccCCccccchhhhhhhccccchhhhhhhcccccccccccchhh
Q 003082 751 -IVLGPNKVNKIQAKHDLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQR 829 (850)
Q Consensus 751 -i~~g~gk~s~~~g~~~~~v~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (850)
+.|+-|.++.... .-+=.+|..+|++ |+.+-- .. |.- |.
T Consensus 968 ~~~~~~g~~~~~~~---~~~~~~~~~~l~~-l~~~~~--------~~---------------------------~~~-g~ 1007 (1060)
T PLN03218 968 EIYTPKGEKTINLA---GRVGQAVAALLRR-LGLPYQ--------GS---------------------------ESH-GK 1007 (1060)
T ss_pred eeeccCCchhHHHH---HHHHHHHHHHHHH-hCCCCC--------CC---------------------------CCC-Ce
Confidence 4444444322221 2255777778866 332211 11 222 66
Q ss_pred ccccccchHHHHHhhh
Q 003082 830 LKVPKKSLHHWLQRRV 845 (850)
Q Consensus 830 ~~~~~~~~~~~~~~~~ 845 (850)
+..+..+|.+|||-|.
T Consensus 1008 ~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1008 LRINGLSLRRWFQPKL 1023 (1060)
T ss_pred EEeccHHHHHHhcccC
Confidence 8899999999999886
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-66 Score=618.48 Aligned_cols=616 Identities=17% Similarity=0.172 Sum_probs=511.8
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH----------------------------HHHHHHHHH
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (850)
+...++.++..|++.|++++|+.+|+.|.+.|..|+....... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 3677888999999999999999999999887765554332111 112244566
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.|.+.|+++.|..+|++|. .|+..+ +++++. .|++.|++++|+++|++|...++.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----~~d~~~----~n~li~---~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----ERDLFS----WNVLVG---GYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----CCCeeE----HHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 7788899999999998886 355443 555553 35578999999999999998888774 46688899999
Q ss_pred HcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
...+++..+.+++..+ .++..++++|+.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999998888877653 45668999999999999999999999999964 79999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
++|++|.+.|+.||..||+++|.+++ ++.+.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999865 6999999999999999999999999999999999999999999999984
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccC-----ccCCchhhhhhhhhhhcccccCCCCCcCCCccccccccc
Q 003082 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (850)
+|++||++|++.|++++|.++|++|.+.+.. .++. ...+....+ ..++..|..
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~~~g~~~eA--------------------~~lf~~m~~- 483 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLRLNNRCFEA--------------------LIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHHHCCCHHHH--------------------HHHHHHHHh-
Confidence 9999999999999999999999999765421 1100 011111111 112223332
Q ss_pred CCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 510 ~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
++.||..||+.+|.+|++ +.+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|++| .||.++||
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 589999999999999985 68999999999999999999999999999999999999999999987 68999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 003082 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEW 666 (850)
Q Consensus 588 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~-~~g~~p~~~~~~~li~~~ 666 (850)
++|.+|+++|+.++|.++|++|.+.|+.||.+||+++|.+|++.|.+++ ++++|++|. +.|+.|+..+|+++++.|
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999777 788999999 689999999999999999
Q ss_pred Hh-hhhhhhhhcccch-------------hhhhhcCCCchhHHHHHHHHH---HHhhhhhhhHHHHhhccchhHHHHHHH
Q 003082 667 CE-GVIQDKNQNQGEV-------------TLCRRTNSQRPQSLLLEKVAV---HLQKSAAENLAIDLRGLTKVEARIIVL 729 (850)
Q Consensus 667 ~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~l~~~~~~~a~~~~~ 729 (850)
++ |.+.++.+....+ ..|+.... ..+.+.... .+.++....|.+..+.++..+....+.
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~----~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH----VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99 6666665543332 11221111 111222222 234444455666556666666777788
Q ss_pred HHHHHHHhhhhcCC
Q 003082 730 AVLRMMKENYSLGV 743 (850)
Q Consensus 730 ~~l~~~~~~~~~~~ 743 (850)
.+.+.|++++....
T Consensus 712 ~vr~~M~~~g~~k~ 725 (857)
T PLN03077 712 RVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHHHHcCCCCC
Confidence 88889998854443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=593.94 Aligned_cols=521 Identities=19% Similarity=0.265 Sum_probs=459.7
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHHHHHh
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGK 233 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~-~~~~~~~li~~~~~ 233 (850)
...++..+..+.+.|++++|+++|+.|...+..+.+...+..++..|.+.|..++|+.+|+.++. +..+|+.++.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 33455556667789999999999999999887666666777889999999999999999988865 44789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l 311 (850)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+++|.+++ |++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 699999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
|++|.+.|+.||..+||.||.+|++.|++++|.++|++|... ..++.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999752 123789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCc
Q 003082 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (850)
Q Consensus 392 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 471 (850)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|+.|.+.+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-------- 679 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-------- 679 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHH
Q 003082 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ 549 (850)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..
T Consensus 680 ---------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 680 ---------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred ---------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 68999999999999985 7899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (850)
Q Consensus 550 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~ 629 (850)
+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++|+..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred h----cCChH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hhhhhhhcccchhhhhhcC
Q 003082 630 R----YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VIQDKNQNQGEVTLCRRTN 688 (850)
Q Consensus 630 ~----~g~~~----------------~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~ 688 (850)
+ ++... -...|+.+|++|.+.|+.||..||+.+|.++|+. ...
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~---------------- 864 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT---------------- 864 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH----------------
Confidence 2 11110 0235899999999999999999999999877642 111
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCC
Q 003082 689 SQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPV 745 (850)
Q Consensus 689 ~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 745 (850)
.+..++.+.......+ ...+|+..|+|++.. ...++.++++|...+..+...
T Consensus 865 --~~~~m~~~m~~~~~~~-~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 --LRNRLIENLGISADSQ-KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred --HHHHHHHHhccCCCCc-chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 1112222222222222 235788889998653 245778899999887666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=570.40 Aligned_cols=602 Identities=16% Similarity=0.176 Sum_probs=497.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...++.++..|++.|++++|..+|++|... + ...+..++.+|.+.|++++|+++|++|...|+.||.++
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d-------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----D-------LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCC----C-------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 455567777777777777777777777532 1 12344566788899999999999999999999998766
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~-~~~~~~~li~ 229 (850)
+..++.+|. ..+++..+.+++..+...|+.+ +...++.++.+|++.|+++.|.++|+.++. +..+|+++|.
T Consensus 190 ----~~~ll~~~~---~~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 190 ----FPCVLRTCG---GIPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred ----HHHHHHHhC---CccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 566666654 5688999999999999999876 456789999999999999999999999865 4589999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~ 307 (850)
+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+++ |++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 79999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+ .| +.||..||+.++.+|++.|++++|.++++
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999996 47999999999999999999999999999986 45 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccccc
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 467 (850)
.|.+.|+.|+..+|++||++|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|... ..++
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCC
Confidence 99999999999999999999999999999999999996 578899999999999999999999999999753 3332
Q ss_pred ccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCC
Q 003082 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (850)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~ 545 (850)
.... ..+...+ ...........+...+.+.|+.+|..++|++|++|++ +.++|..+|+.+ .
T Consensus 489 ~~t~--------~~lL~a~----~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 489 SVTL--------IAALSAC----ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred HhHH--------HHHHHHH----hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 1100 0000000 0001111123344556778999999999999999974 789999999987 5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 003082 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITL 624 (850)
Q Consensus 546 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~l 624 (850)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hhhhhhhcccchhhhhhcCCCchhHHHHHHHHHH
Q 003082 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703 (850)
Q Consensus 625 i~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 703 (850)
+++|++.|++++ |.+++++| .++||..+|++|+.++... ....+......+......+. ..+.++..
T Consensus 632 v~~l~r~G~~~e---A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~y~ll~n----- 699 (857)
T PLN03077 632 VDLLGRAGKLTE---AYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV-GYYILLCN----- 699 (857)
T ss_pred HHHHHhCCCHHH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHH-----
Confidence 999999999888 66788888 5899999999999987653 22222111111111111111 11111111
Q ss_pred HhhhhhhhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCC
Q 003082 704 LQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVP 744 (850)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 744 (850)
......+.+....++..+++..-+..+|.+
T Consensus 700 -----------~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 700 -----------LYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred -----------HHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 112223555677778888887777777765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-58 Score=536.85 Aligned_cols=449 Identities=17% Similarity=0.236 Sum_probs=327.6
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcC-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
..+..+.+.|++++|+++|+.|...+ ..|+.. +++.++.+|. +.++.+.|.+++..|.+.|+.|+.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~---~~~~~~~a~~l~~~m~~~g~~~~~------ 158 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACI---ALKSIRCVKAVYWHVESSGFEPDQ------ 158 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCCcch------
Confidence 33445556777777777777776543 455443 3555555544 457788888888888877765532
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
.+|+.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 159 -------------------------~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 159 -------------------------YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred -------------------------HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHH
Confidence 5677777777777777777777777753 67777777777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
++|++|.+.|+.||..||++++.+++ +..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 286 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 77777777777777777777777655 4667777777777777777777777777777777777777777777764
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 357777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcC
Q 003082 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (850)
+|++|+++|++.|++++|.++|++|. .||
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~d 390 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RKN 390 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CCC
Confidence 77777777777777777777777663 467
Q ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003082 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAIK 591 (850)
Q Consensus 515 ~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~li~ 591 (850)
..+||++|.+|++ +.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 7777777777774 5677777777777777777777777777777777777777777777765 577777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-h
Q 003082 592 VCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE-G 669 (850)
Q Consensus 592 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~-~~~~~~li~~~~~-~ 669 (850)
+|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.+++ ++++|. ++.|+ ..+|..|++.|++ |
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhCC
Confidence 777777777777777665 567777777777777777777766433 455554 44454 4567777777776 4
Q ss_pred hhhhhh
Q 003082 670 VIQDKN 675 (850)
Q Consensus 670 ~~~~~~ 675 (850)
.+.++.
T Consensus 543 ~~~~A~ 548 (697)
T PLN03081 543 RQAEAA 548 (697)
T ss_pred CHHHHH
Confidence 444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=510.12 Aligned_cols=460 Identities=17% Similarity=0.278 Sum_probs=409.3
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCC-CCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
....+.+.|++++|+++|+.|...+ +.| +..+|+.++.+|++.++++.
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-------------------------------~~~t~~~ll~a~~~~~~~~~ 141 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTL-------------------------------PASTYDALVEACIALKSIRC 141 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCC-------------------------------CHHHHHHHHHHHHhCCCHHH
Confidence 3445566778888888887776543 222 33789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK 317 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~ 317 (850)
|.+++..|.+.|+.||..+||.|+++|+++|++++|.++|++|. .||..+||++|.+++ |++++|+++|++|.+
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 589999999999865 699999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.|+.||..||+.++.+|++.|+.+.+.+++..+.+ .| +.+|..+||+||++|++.|++++|.++|++|. .+|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~---~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK---TG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH---hC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 99999999999999999999999999999999886 45 78999999999999999999999999999995 569
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~ 477 (850)
.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------------- 355 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------------- 355 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
+.||..+||++|++|++ +.++|.++|++|.+ ||..+||+||
T Consensus 356 ---------------------------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 356 ---------------------------------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred ---------------------------------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 68999999999999984 78999999999964 7999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCh
Q 003082 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSL 634 (850)
Q Consensus 556 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~ 634 (850)
.+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999986 79999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhhcccchhhhhhcCCCchhHHHHHHHHHHHhhhhhhhHH
Q 003082 635 HEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLA 713 (850)
Q Consensus 635 ~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 713 (850)
++ |.++|++| ++.||..+|++|+.+++. +.+..+.. +.+++ ..+.+.....|.
T Consensus 479 ~e---A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~-------------------~~~~l-~~~~p~~~~~y~ 532 (697)
T PLN03081 479 DE---AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL-------------------AAEKL-YGMGPEKLNNYV 532 (697)
T ss_pred HH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH-------------------HHHHH-hCCCCCCCcchH
Confidence 88 55676655 899999999999999986 32222111 11111 123344445788
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhhh
Q 003082 714 IDLRGLTKVEARIIVLAVLRMMKENYS 740 (850)
Q Consensus 714 ~~l~~~~~~~a~~~~~~~l~~~~~~~~ 740 (850)
+.++.+++.+....+..++++|++++.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888999998889999999999998853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-26 Score=282.70 Aligned_cols=548 Identities=12% Similarity=0.044 Sum_probs=321.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.+...|+. ...+..++..+...|++++|+..++.+.... |..... +......+...|++++|...|+++.+
T Consensus 321 ~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 321 ILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAA------LSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34445554 5566667777777777777777777776653 222111 11222344566777777777777763
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (850)
..|+. ...+...+..+...|++++|++.++.+.... |+.......++..+.+.|++++|+..++.+
T Consensus 392 --~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 392 --LDPEN------AAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred --cCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34443 2233334444556667777777666665543 444444555566666666666666665443
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
|.+..++..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4444556666666666666666666666666532 1344455566666666666666666666665542 1234444444
Q ss_pred HHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
...+ .|+.++|...|+++.+.+ +.+...+..+...|.+.|++++|..+++.+.+. .+.+..+|..+...|..
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHH
Confidence 4432 356666666666665543 334555556666666666666666666665541 23345566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|...|+++.+... .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655432 245556666666666666666666666665542 33455566666666666666666666
Q ss_pred HHHHhhccccccccC-------ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--
Q 003082 456 FRSWTLSKTQVALGE-------DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-- 526 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~-- 526 (850)
++.+........... ...+....+..... ......|+..++..+...+.
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR----------------------KALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHHhhCCCchHHHHHHHHHHHC
Confidence 666554321100000 00000000000000 00012344445555555554
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (850)
Q Consensus 527 ~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~ 606 (850)
++.++|.+.+..+.+.. +.+...+..+...|.+.|+.++|..+|+++.+.. +.+...++.+...+.+.|+ .+|++++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 46777888887777653 3466777788888888888888888888887754 4567778888888888888 7788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 607 ~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
+++.+.. .-+..++..+...+...|++++ |+++|+++.+.+.. +..++..+...+++
T Consensus 827 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 827 EKALKLA-PNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 8877632 2245666677777778888766 66688888876654 67777777777776
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-26 Score=280.25 Aligned_cols=530 Identities=13% Similarity=0.027 Sum_probs=390.3
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.+..+|.. ...+..++..+...|++++|...|+++.+. .|....... .++. .+...|++++|++.|+++.+
T Consensus 355 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~---~l~~---~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 355 ALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAART---QLGI---SKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHH---HHHH---HHHhCCChHHHHHHHHHHHh
Confidence 44555655 778888999999999999999999999887 343332222 2222 23477889999999988884
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (850)
..|+.. ......+..+.+.|++++|+.+++.+.... |+....+..++..+...|++++|+.+|..+
T Consensus 426 --~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 426 --LDPELG------RADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred --hCCcch------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 345431 222233445667888888888888887654 666677888888888888888888887653
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
|.+...+..++..+...|++++|.+.|+.+.+..+ .+..++..+...+.+.|++++|...|+++.+.+ +.+...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 66667777888888888888888888888887542 467778888888888888888888888887653 2334455555
Q ss_pred HHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
...+ .|+++.|.++++.+.+.. +.+..+|..+...|...|++++|...|+.+.+. .+.+...+..+...|..
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHH
Confidence 5543 468888888888887643 556778888888888888888888888888763 23356677788888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|..+|+++.+... .+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888876542 357788888888888888888888888887764 45667777788888888888888888
Q ss_pred HHHHhhccccccccC------ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--c
Q 003082 456 FRSWTLSKTQVALGE------DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~ 527 (850)
|+.+........... ...|....+...... .+. ..+.+...+..+...|. +
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------~l~--~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA-------------------WLK--THPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHHHCc
Confidence 888765442210000 001111111100000 000 12456677777777776 5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
+.++|..+|+++.+.. +.+..+++.+...+.+.|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++|+
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7899999999999864 3578899999999999999 88999999998753 3356678889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
++.+.+. .+..++..+..++.+.|+.++ |.+++++|.
T Consensus 862 ~a~~~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~ 898 (899)
T TIGR02917 862 KAVNIAP-EAAAIRYHLALALLATGRKAE---ARKELDKLL 898 (899)
T ss_pred HHHhhCC-CChHHHHHHHHHHHHcCCHHH---HHHHHHHHh
Confidence 9998664 389999999999999999888 666788775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-18 Score=215.15 Aligned_cols=554 Identities=12% Similarity=0.058 Sum_probs=332.7
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHH----------HHHHHHHhhhcCchh
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEM----------VASGIVKSIREGRID 130 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~g~~~ 130 (850)
+.+..+|++ +.++..++..+...|++++|...+++..+.. |........... .......+...|+++
T Consensus 53 kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 53 RLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 355788888 8889999999999999999999999999984 443222110000 011123456889999
Q ss_pred HHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHH
Q 003082 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (850)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (850)
+|+..|+++.+ ..|.... .... +.... ....|++++|+..++++.+.. |++......++..+...|++++|
T Consensus 130 eA~~~~~~~l~--~~p~~~~--la~~-y~~~~--~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 130 EALASYDKLFN--GAPPELD--LAVE-YWRLV--AKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHHHHHHHHcc--CCCCChH--HHHH-HHHHH--hhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHH
Confidence 99999999984 3454321 1111 22111 224699999999999999876 88888888999999999999999
Q ss_pred HHHhhhCCCC--------------------------------------cch------H--------------HHHHHHHH
Q 003082 211 IRYACIVPRA--------------------------------------DIL------F--------------CNFVREFG 232 (850)
Q Consensus 211 ~~~~~~~p~~--------------------------------------~~~------~--------------~~li~~~~ 232 (850)
+..++.+... ... + ..+...+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 9887653110 000 0 01245677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH------------
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN------------ 299 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~------------ 299 (850)
..|++++|+..|++.++..+ .+..++..+..+|.+.|++++|+..|++..+.... ++...|..++.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 88999999999999988532 37788999999999999999999999999876432 12222222221
Q ss_pred --hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHH---
Q 003082 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVF--- 373 (850)
Q Consensus 300 --~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~--- 373 (850)
...+++++|.+.|++..... +.+...+..|...+...|++++|.+.|+++.+. .|+ ...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM------DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhc
Confidence 23579999999999998864 446677888999999999999999999998873 233 33444444333
Q ss_pred ---------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 374 ---------------------------------------ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (850)
Q Consensus 374 ---------------------------------------~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 414 (850)
...|++++|...|++.++.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 3344555555555554443222 333444444455555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcc--cccC
Q 003082 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ--SITN 492 (850)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 492 (850)
++|...|+++.+.. +.+...+..+...+.+.++.++|...++.+........ +..+...... ....
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~-----------~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN-----------IQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh-----------HHHHHHHHhhhHHHHH
Confidence 55555555544321 11222222222233444555555554443321110000 0000000000 0000
Q ss_pred CCCCcCCCcc---cccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003082 493 TPNFVPNSHY---SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567 (850)
Q Consensus 493 ~~~~~~~~~~---~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 567 (850)
.......... ...+.. .+.+...+..+-..+. ++.++|...|+...+... .+...+..+...|...|+.++|
T Consensus 580 a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 0000000000 000111 1223333333333333 467788888887777421 2566777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003082 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYGSLHEVQQCLA 642 (850)
Q Consensus 568 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~t~~~li~a~~~~g~~~~a~~a~~ 642 (850)
++.++...+.. +.+..++..+..++...|++++|.++|+++....- .| +...+..+...+...|+.++ |+.
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~---A~~ 732 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ---ALE 732 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH---HHH
Confidence 88888776532 22445566677777788888888888888775321 12 22455555666777788766 445
Q ss_pred HHHHHH-HcCCCC
Q 003082 643 VYQDMW-KAGYKA 654 (850)
Q Consensus 643 l~~~M~-~~g~~p 654 (850)
.|++.. ..|+.|
T Consensus 733 ~y~~Al~~~~~~~ 745 (1157)
T PRK11447 733 TYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHhhcCCCC
Confidence 555554 345543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-17 Score=206.82 Aligned_cols=481 Identities=12% Similarity=0.050 Sum_probs=301.7
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhh-Hhhh-----------hHHHHHH------------
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASM-----------LSLEMVA------------ 117 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~-~~~~-----------~~~~~~~------------ 117 (850)
.+..+|+. ..++..++..+...|++++|+..++++......... .... .....+.
T Consensus 173 ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 173 LNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 44667777 778889999999999999999999998654211000 0000 0000000
Q ss_pred ----------------------HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHH
Q 003082 118 ----------------------SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFV 175 (850)
Q Consensus 118 ----------------------~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~ 175 (850)
.....+...|++++|+..|+++++ ..|+. .+++..++..+...|++++|+
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~------~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD------SEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------HHHHHHHHHHHHHcCCHHHHH
Confidence 001234456777777777777763 35543 334445555566667777777
Q ss_pred HHHHHHHhCCCCCCCcc--cH------------HHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 176 GLMEVLEEFRLPVKELD--EE------------FRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 176 ~~~~~~~~~~~~~~~~~--~~------------~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
..|++.++.. |+... .| ...+..+...|++++|+..|+.+ |.+..++..+...|...|++
T Consensus 324 ~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 324 AQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 7777766543 32211 01 12244556677777777766553 55555666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--------CHHHHHHHHH--hhcCChHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL--------NIYVFNSLMN--VNAHDLKF 307 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------d~~t~~~ll~--~~~~~~~~ 307 (850)
++|++.|++.++..+ .+...+..+...|. .++.++|+.+++.+....... ....+..+-. ...+++++
T Consensus 402 ~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 777777777666422 23445555555553 345677766665543221000 0001111111 12467788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
|++.|++..+.. +-+...+..+...|.+.|++++|...|+++.+. .+.+...+..+...+...++.++|+..++
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-----~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-----KPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888877654 234566667777888888888888888877652 12233344444445667788888888777
Q ss_pred HHHHCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 388 DMLSAGVTPNTI---------TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 388 ~m~~~g~~p~~~---------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|.+.|+.
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654322222211 123455667788888888888762 245556677788888889999999999888
Q ss_pred HhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHH
Q 003082 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALM 536 (850)
Q Consensus 459 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~ 536 (850)
..... +.+...+..+...+. ++.++|.+.+
T Consensus 629 al~~~------------------------------------------------P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 629 VLTRE------------------------------------------------PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHhC------------------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76532 335666777777765 5789999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 537 NEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM--SP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 537 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
+...+. .| +..++..+...+...|++++|.++++++....- .| +...+..+...+...|++++|...|++..
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 987764 34 455677788899999999999999999987432 22 23566677888999999999999999886
Q ss_pred H-CCCCC
Q 003082 611 H-YQIQP 616 (850)
Q Consensus 611 ~-~g~~p 616 (850)
. .|+.|
T Consensus 739 ~~~~~~~ 745 (1157)
T PRK11447 739 VASGITP 745 (1157)
T ss_pred hhcCCCC
Confidence 4 45544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-19 Score=184.56 Aligned_cols=369 Identities=13% Similarity=0.114 Sum_probs=312.0
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
+.+++..|.- .+.|..+++.+-..|++++|+.+|+.+++. +|.. .+.+.+...++..+|+.+.|...|.++
T Consensus 106 ~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~f------ida~inla~al~~~~~~~~a~~~~~~a 176 (966)
T KOG4626|consen 106 LLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKF------IDAYINLAAALVTQGDLELAVQCFFEA 176 (966)
T ss_pred hhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchh------hHHHhhHHHHHHhcCCCcccHHHHHHH
Confidence 3466777776 899999999999999999999999999998 5543 334455666788999999999999999
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (850)
+ .+.|+. +.+..+....+...|+.+||...|.+.++.. |.-...|+.++-.+-.+|+...|+..|+.+
T Consensus 177 l--qlnP~l------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 177 L--QLNPDL------YCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred H--hcCcch------hhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 9 668875 4444444555667899999999998877644 777889999999999999999999999875
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHH
Q 003082 218 --PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYV 293 (850)
Q Consensus 218 --p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t 293 (850)
|....+|.+|+..|-..+.++.|+..|.+.... .| ...+|..|.-.|-.+|.++-|+..|++..+. +|+ ...
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 777799999999999999999999999998874 45 4567889999999999999999999998876 555 467
Q ss_pred HHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHH
Q 003082 294 FNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIV 370 (850)
Q Consensus 294 ~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li 370 (850)
||.|-++. .|++.+|.+.|.+.+... +--....+.|...|...|.+++|..+|..... +.|. ...+|.|.
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLA 395 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHH
Confidence 88888775 379999999999998763 33466888999999999999999999998876 4555 45789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCC
Q 003082 371 KVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ 448 (850)
Q Consensus 371 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 448 (850)
..|-+.|++++|+..+++.++ +.|+ ...|+.+...|-..|+++.|.+.+...+.. .|. ...++.|...|-.+|+
T Consensus 396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCC
Confidence 999999999999999999886 5777 568999999999999999999999999875 444 3568899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 003082 449 FDRAFRLFRSWTLS 462 (850)
Q Consensus 449 ~~~A~~l~~~m~~~ 462 (850)
+.+|.+-+++..+.
T Consensus 472 i~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 472 IPEAIQSYRTALKL 485 (966)
T ss_pred cHHHHHHHHHHHcc
Confidence 99999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=189.13 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 303 (850)
.+..+..+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 33445567788899999999999988632 356688889999999999999999998877642111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
+..++..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.
T Consensus 106 -------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 106 -------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHH
Confidence 1234556666666777777777777766542 2345566677777777777777777
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+.++.+.+.+..++. ..|..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665544322 234556666677777777777777776643 233455666667777777777777777776
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m 539 (850)
...+ |+
T Consensus 241 ~~~~-------------------------------------------------p~------------------------- 246 (389)
T PRK11788 241 EEQD-------------------------------------------------PE------------------------- 246 (389)
T ss_pred HHHC-------------------------------------------------hh-------------------------
Confidence 5321 00
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 540 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
....+++.++.+|++.|++++|...++++.+. .|+...+..++..+.+.|++++|.++|+++.+. .|+..
T Consensus 247 ------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 247 ------YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 01234455556666666666666666666553 345445556666666666666666666666543 46666
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHHHHcCCCCCHH
Q 003082 620 TYITLLRARSR---YGSLHEVQQCLAVYQDMWKAGYKANDT 657 (850)
Q Consensus 620 t~~~li~a~~~---~g~~~~a~~a~~l~~~M~~~g~~p~~~ 657 (850)
+++.++..+.. .|+.++ ++.+|++|.+.++.|+..
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchh---HHHHHHHHHHHHHhCCCC
Confidence 66666655553 223333 555666666655555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-17 Score=170.82 Aligned_cols=437 Identities=16% Similarity=0.158 Sum_probs=269.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccch
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (850)
.-..|+..+-+.|+|++|++.....-.. +|..-..++.+ .. .+....+++.-...-..++ .+.|.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll---~a---i~~q~~r~d~s~a~~~~a~--r~~~q----- 114 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLL---SA---IFFQGSRLDKSSAGSLLAI--RKNPQ----- 114 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeee---hh---hhhcccchhhhhhhhhhhh--hccch-----
Confidence 3567888889999999999998877766 44432222211 11 1224445554433322333 23332
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
.-+++.+.+..+...|+..+|+.+++.+++.. |+....|..++.++..+|+...|...|... |...-+.+.+.
T Consensus 115 -~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 -GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred -HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 24555555666667888888888888887754 777777777777777777777777765432 43334444566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHhh--cCC
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVN--AHD 304 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~--~~~ 304 (850)
..+-..|+..+|...|.+.++. .|. .++|+.|.-.+-..|+...|++.|++..+. .|+ ...|-.|=+++ .+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 6666777777777777777664 233 345777777777777777777777776643 222 11222222222 234
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHH
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~ 383 (850)
++.|+..|.+..... +-..+.|..|...|-..|.+|.|.+.|++... +.|+ ...|+.|..++-..|++.+|.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~------~~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE------LQPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh------cCCCchHHHhHHHHHHHhccchHHHH
Confidence 555555555444321 12244555555556666666666666665554 3333 345666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.+.+.+..... .....+.|...|...|.+++|..+|....+- .|.- ..++.|...|-+.|++++|..-+++.
T Consensus 341 ~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea--- 414 (966)
T KOG4626|consen 341 DCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA--- 414 (966)
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---
Confidence 666665554221 3445555666666666666666666655542 2322 34555555666666666665555443
Q ss_pred cccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 003082 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542 (850)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~ 542 (850)
.+
T Consensus 415 -----------------------------------------------------------------------------lr- 416 (966)
T KOG4626|consen 415 -----------------------------------------------------------------------------LR- 416 (966)
T ss_pred -----------------------------------------------------------------------------Hh-
Confidence 33
Q ss_pred CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 003082 543 GLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LV 619 (850)
Q Consensus 543 g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ 619 (850)
+.|+. ..|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-..|++.+|+.-|++... ++|| ..
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 45654 47888999999999999999999999874 454 45789999999999999999999999885 5676 34
Q ss_pred HHHHHHHH
Q 003082 620 TYITLLRA 627 (850)
Q Consensus 620 t~~~li~a 627 (850)
.|..++.+
T Consensus 492 A~cNllh~ 499 (966)
T KOG4626|consen 492 AYCNLLHC 499 (966)
T ss_pred hhhHHHHH
Confidence 45445444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-15 Score=178.67 Aligned_cols=495 Identities=9% Similarity=-0.043 Sum_probs=302.3
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
++..+|++ ..++..|+..|...|++++|+..+++.++. +|........ ++ .-+++++|...|+++.
T Consensus 70 Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~---La-------~i~~~~kA~~~ye~l~- 135 (987)
T PRK09782 70 IHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERS---LA-------AIPVEVKSVTTVEELL- 135 (987)
T ss_pred HHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---HH-------HhccChhHHHHHHHHH-
Confidence 67899999 999999999999999999999999999998 5554333222 11 1188999999999999
Q ss_pred cCCCCccccchhhhHHHHHHHHh--------hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 003082 142 LGVAPLELFDGSGFKLLKNECQR--------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (850)
...|+. .+++..++.. |.+. ++|.+.++ .......|.+.+....+.+.|.+.+++++|+..
T Consensus 136 -~~~P~n------~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 136 -AQQKAC------DAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred -HhCCCC------hhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457765 2333333332 4333 44444444 222222223333455557778888888888777
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 214 ~~~~----p~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
+..+ |.+......|..+|.. .++ +.+..++... ...+...+..+.+.|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 7554 3344445556667776 366 6666665532 2256677777778888888888887777775432111
Q ss_pred -cCHHHHHHHHH--------------------------------------------------------------------
Q 003082 289 -LNIYVFNSLMN-------------------------------------------------------------------- 299 (850)
Q Consensus 289 -pd~~t~~~ll~-------------------------------------------------------------------- 299 (850)
|+..+|.-++.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 22222211111
Q ss_pred ---------------------------hhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh---HHHHH--
Q 003082 300 ---------------------------VNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGNT---VLAQE-- 345 (850)
Q Consensus 300 ---------------------------~~~~~~~~a~~l~~~m~~~--g~~pd~~t~~~Ll~~~~~~g~~---~~A~~-- 345 (850)
+..|+.++|.++|+..... ...++....+-|+..|.+.+.. ..+..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 0112222222333222220 0111222333444444444331 11111
Q ss_pred --------------------HHHHHHHhhhcCCccc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 346 --------------------IYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 346 --------------------i~~~m~~~~~~g~~~~--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
.++...... +.-++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 111111100 00012 34455555555554 6666777766666544 245443333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 483 (850)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 344445677777777777776543 344444555566667777777777777766532
Q ss_pred hhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh---ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003082 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (850)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~---~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 560 (850)
.|+.......+.... ++.++|...+++..+ +.|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 122222111222222 688999999999987 45678889999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003082 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQ 639 (850)
Q Consensus 561 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~ 639 (850)
.|+.++|...+++..+.. +-+...++.+..++...|+.++|+..|++..+. .| +...+..+-.++...|++++
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~e--- 695 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAA--- 695 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---
Confidence 999999999999998863 335677888888999999999999999999874 45 57788899999999999888
Q ss_pred HHHHHHHHHHc
Q 003082 640 CLAVYQDMWKA 650 (850)
Q Consensus 640 a~~l~~~M~~~ 650 (850)
|...|++..+.
T Consensus 696 A~~~l~~Al~l 706 (987)
T PRK09782 696 TQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhc
Confidence 55567776653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-17 Score=182.18 Aligned_cols=282 Identities=11% Similarity=0.064 Sum_probs=201.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHH
Q 003082 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVK 371 (850)
Q Consensus 294 ~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~ 371 (850)
+..+.....++++.|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+... +...+ ....+..+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHH
Confidence 33444444456666666666666543 234557777777888888888888888777641 10111 1245677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhC
Q 003082 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEAC 447 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g 447 (850)
.|...|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 7788888888888888877653 235667777888888888888888888877765422221 13445555666677
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~ 527 (850)
++++|...|+++.
T Consensus 195 ~~~~A~~~~~~al------------------------------------------------------------------- 207 (389)
T PRK11788 195 DLDAARALLKKAL------------------------------------------------------------------- 207 (389)
T ss_pred CHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 7777777666543
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++
T Consensus 208 -------------~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 208 -------------AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred -------------hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 123457778889999999999999999999875322224678999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
++.+. .|+...+..+...+.+.|++++ |+.+|+++.+. .|+...++.++..++.
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~---A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEA---AQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHH---HHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 99875 5777788999999999999887 67788888765 6999999999988774
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-15 Score=177.53 Aligned_cols=435 Identities=11% Similarity=-0.034 Sum_probs=279.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+.+.|+|++|+..|+++++..++|. .+.+....|...|++++|++.+++++ .+.|+.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al--~l~p~~-- 193 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAAL--ELDPDY-- 193 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHH--HcCCCC--
Confidence 34566888899999999999999999998844322 12344456778899999999999999 557765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
..++...+..+...|++++|+..|..+.... +........++..+........+...++..|.....+..+...
T Consensus 194 ----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 194 ----SKALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 5667777888889999999999887765443 1111111222222222222344445555555554444444443
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCcC-HHHHHHHHHh--hc
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NA 302 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~~--~~ 302 (850)
+ .......+..-++...+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 268 L-QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred H-HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 3 222222222222221111 1111 111111111 123468899999999888764 2343 2333333232 35
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
|++++|+..|++.++.. +-+...|..+...+...|++++|...|+...+. -+.+..+|..+...+...|++++|
T Consensus 345 g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 345 GKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877653 223567778888888889999999999888763 133567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 383 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
...|++.++.... +...+..+...+.+.|++++|+..|++.++.. +.+...|+.+...+...|++++|.+.|+.....
T Consensus 419 ~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999888876432 56777788888888999999999999887652 345677888888888899999998888876542
Q ss_pred cccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 003082 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542 (850)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~ 542 (850)
. |+...
T Consensus 497 ~-------------------------------------------------p~~~~------------------------- 502 (615)
T TIGR00990 497 E-------------------------------------------------KETKP------------------------- 502 (615)
T ss_pred C-------------------------------------------------Ccccc-------------------------
Confidence 1 11000
Q ss_pred CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 543 GLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 543 g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
...+. ..++..+..|...|++++|..++++..+.. +.+...+..+...+.+.|++++|.++|++..+
T Consensus 503 -~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 503 -MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00000 011222223334688888888888877653 22445678888888888888888888888765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-15 Score=170.22 Aligned_cols=416 Identities=11% Similarity=-0.015 Sum_probs=260.6
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+...|++++|+..|++++ .+.|+. ..+.+.+..+...|++++|++.++..++.. |+....+..++.++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al--~~~p~~-------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAI--ECKPDP-------VYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHcCCHHHHHHHHHHHH--hcCCch-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 3458899999999999999 557752 246666777888999999999999988765 77778888889999
Q ss_pred HcCCChHHHHHHhhhC---CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003082 202 VNKPDVNLAIRYACIV---PRAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~---p~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 277 (850)
...|++++|+..|..+ +... .....++..+.. ..+........+... ++...+..+...+ ...+......
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999888766432 1111 111111111111 122233333333211 2222222222222 1111111111
Q ss_pred HHHHHHhCCCCcCH---HH--HHHHHHh-hcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 278 IYEDLRSQNVTLNI---YV--FNSLMNV-NAHDLKFTLEVYKNMQKLG-VMA-DMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 278 ~~~~m~~~g~~pd~---~t--~~~ll~~-~~~~~~~a~~l~~~m~~~g-~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
-+..-.+ ..++. .. +...+.. ..+++++|.+.|+.....+ ..| +...|+.+...+...|++++|...|+.
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11110 00 0000111 1246777888888777654 222 345677777777778888888888877
Q ss_pred HHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 350 VKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 350 m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
... ..|+ ...|..+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|++.++..
T Consensus 357 al~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 357 SIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 765 3344 446777777777788888888888877765422 56677777777778888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccc
Q 003082 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (850)
Q Consensus 429 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (850)
+.+...+..+...+.+.|++++|...|+.....
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------------------------------- 462 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---------------------------------------------- 462 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------------
Confidence 334555666667777777777777777654321
Q ss_pred cCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CH
Q 003082 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----DV 583 (850)
Q Consensus 509 ~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~ 583 (850)
.+-+...|+.+...|...|++++|...|++..+..-.. +.
T Consensus 463 -----------------------------------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 463 -----------------------------------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -----------------------------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 12245678888899999999999999999988742111 11
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 584 -VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 584 -~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
..++..+..+...|++++|.+++++..... .-+...+..+...+.+.|++++ |++.|++..+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~ 570 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE---ALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHH
Confidence 122223333445799999999999988753 2345678899999999999888 6667777654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=175.49 Aligned_cols=329 Identities=13% Similarity=0.017 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..-...++..+.+.|++++|+.+++..+.. .|.+...+. .........|++++|++.|+++. .+.|+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~------~l~~~~l~~g~~~~A~~~l~~~l--~~~P~~-- 109 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLR------RWVISPLASSQPDAVLQVVNKLL--AVNVCQ-- 109 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHH------HHhhhHhhcCCHHHHHHHHHHHH--HhCCCC--
Confidence 444566788899999999999999999998 444332211 12233457899999999999999 568876
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
...+...+..+...|++++|+..+++.++.. |+....+..++..+...|++++|+..++.+ |.+...+..
T Consensus 110 ----~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 110 ----PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4456666777888999999999999998764 888888888999999999999999877543 555555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCC
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 304 (850)
++ .+...|++++|+..++.+.+....++...+..+..++...|++++|...|+...+... .+...+..+-.. ..|+
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 43 4788899999999999988764434555556667788899999999999999887632 233444443333 3466
Q ss_pred hHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHH
Q 003082 305 LKF----TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (850)
Q Consensus 305 ~~~----a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~ 380 (850)
+++ |...|++..... +.+...+..+...+.+.|++++|...+++..+. -+.+...+..+...|.+.|+++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 664 788888888754 346778888889999999999999999888773 1233556777788888999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+|...|+.+...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 336 eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999888753 343 33444567788899999999999988875
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-13 Score=161.20 Aligned_cols=519 Identities=11% Similarity=-0.044 Sum_probs=304.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..+-..+..+...|++++|+..|+++++. +|..... ...+...|...|++++|+..++++. ...|++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv--~ldP~n~~~ 114 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQL--KRHPGDARL 114 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHH--hcCcccHHH
Confidence 33444455556669999999999999998 6665222 2345667789999999999999999 557765321
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH--------HHcCCChHHHHHHhhhCCCC--c
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA--D 221 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~p~~--~ 221 (850)
...+ +..+++++|+..++++.... |++...+..++.. |.+.+...+++. .+..+++ .
T Consensus 115 ---~~~L-------a~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~ 181 (987)
T PRK09782 115 ---ERSL-------AAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEG 181 (987)
T ss_pred ---HHHH-------HHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCc
Confidence 1111 12288999999999999876 7777777777776 888888888888 6555544 2
Q ss_pred c-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 222 I-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 222 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
. ....+...|.+.|+|++|+.++..+.+.++ .+..-...|..+|.. .++ +++..++.. .+.-|...+..+..
T Consensus 182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 2 444559999999999999999999999764 345557777778887 477 888888653 22356677777777
Q ss_pred hh--cCChHHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHHcCChHHHHHH
Q 003082 300 VN--AHDLKFTLEVYKNMQKLGVM-ADMASYN------------------------------ILLKACCLAGNTVLAQEI 346 (850)
Q Consensus 300 ~~--~~~~~~a~~l~~~m~~~g~~-pd~~t~~------------------------------~Ll~~~~~~g~~~~A~~i 346 (850)
.+ .|+.+.|.++++++...-.. |...++- .++..+.+.++++.++++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 54 46888888888776543211 2211111 124444555555544443
Q ss_pred HHH-----HHHhhhcCCc-------------------ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC-CCCCHHH
Q 003082 347 YGE-----VKHLEAKGVL-------------------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AG-VTPNTIT 400 (850)
Q Consensus 347 ~~~-----m~~~~~~g~~-------------------~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g-~~p~~~t 400 (850)
.+. |......+.. +-+.....-+--...+.|+.++|.++|+.... .+ -.++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 210 0000000000 00111222222234566667777777666654 11 2234444
Q ss_pred HHHHHHHHHHcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHhCCHHH
Q 003082 401 WSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFDR 451 (850)
Q Consensus 401 y~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~g~~~~ 451 (850)
..-++..|.+.+. ...+..+ .+..... +. ++ +...|..+..++.. ++.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4445555554443 1222111 1111110 11 12 33444444444443 55555
Q ss_pred HHHHHHHHhhccccccc----cC--ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 452 AFRLFRSWTLSKTQVAL----GE--DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 452 A~~l~~~m~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
|...+.+.......... .. ...+..+.+..... +.....|+...+..+...+
T Consensus 495 Ai~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~r----------------------ka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 495 ALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQ----------------------KISLHDMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHhccCCCcHHHHHHHHHH
Confidence 55544443322210000 00 00000000000000 0001123333333333333
Q ss_pred h--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003082 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 526 ~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 603 (850)
. ++.++|...++...+.. +.+...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3 57788899988888754 223333434444555669999999999998874 577888888999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 003082 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 604 ~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~ 650 (850)
..|++..+. .| +...++.+-.++...|+.++ |+..|++..+.
T Consensus 630 ~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~AL~l 672 (987)
T PRK09782 630 SDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh
Confidence 999998874 45 46667777778888898777 66677777663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-15 Score=170.16 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=212.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
...+...|++++|..+++..+... |+....+..++.+....|++++|+..++.+ |.+..++..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 344557899999999999988765 778888888888888999999999988774 77778888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+......+....++.......|++++|...++.+.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998752 24567888899999999999999999988876533222222222222345678888888888766
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAG 393 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g 393 (850)
....++...+..+...+.+.|++++|...|+.+.+. .+.+...+..+...|...|++++ |...|++..+..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 543344445555567777888888888888877762 13345666777777788888775 677777777654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 394 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+.+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 32 56677777788888888888888888877653 2334556667777777888888877776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-14 Score=153.97 Aligned_cols=539 Identities=13% Similarity=0.049 Sum_probs=359.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.++..|++ ......-+......|+|..|+.+|..++... |....-+. +.. -..+++.|+.+.|+..|.++.
T Consensus 156 Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~in--p~~~aD~r-Igi----g~Cf~kl~~~~~a~~a~~ral- 226 (1018)
T KOG2002|consen 156 VLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRIN--PACKADVR-IGI----GHCFWKLGMSEKALLAFERAL- 226 (1018)
T ss_pred HHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcC--cccCCCcc-chh----hhHHHhccchhhHHHHHHHHH-
Confidence 34556665 5555555666677799999999999988874 22211110 111 123558899999999999999
Q ss_pred cCCCCccccchhhhHHHHHHHHh---hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC
Q 003082 142 LGVAPLELFDGSGFKLLKNECQR---LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
.+.|.. .++++.++.. .-+...+..++.++...-. ..+.+++..+.+..-|...|++..+..+...+-
T Consensus 227 -qLdp~~------v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 227 -QLDPTC------VSALVALGEVDLNFNDSDSYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred -hcChhh------HHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 557743 3334333322 2233445566666665543 337888999999999999999999988765541
Q ss_pred -------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 219 -------RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 219 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
--...|+.++.+|..+|++++|...|.+..+....--+..+--|...|.+.|+++.+...|+.+.+. .||.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~ 375 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN 375 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch
Confidence 1225688999999999999999999998877532222445667889999999999999999999876 5776
Q ss_pred HHHHHHHHh-hcC------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhcCCcccCH
Q 003082 292 YVFNSLMNV-NAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDV 363 (850)
Q Consensus 292 ~t~~~ll~~-~~~------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~-~~~~g~~~~d~ 363 (850)
.--+.++.+ |++ ..+.|..+.....+.- +.|...|-.+...+... +...++..|..... +...+. .+..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~-~ip~ 452 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGK-QIPP 452 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCC-CCCH
Confidence 555555553 443 3466777777776653 45777787776666554 44444777766553 333443 4777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTP------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
...|.+...+...|++++|...|...+.. ...+ +..+--.+...+-..++++.|.++|..+.+. .|+-+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88999999999999999999999988754 1222 3223334566667778999999999999876 34433
Q ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCC-CcccccccccCCC
Q 003082 435 -CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-SHYSSFDKRFSFK 512 (850)
Q Consensus 435 -~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 512 (850)
.|--+...--..+...+|...++.....+.........-|....... ...++ ..+....++....
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~-------------~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS-------------EWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh-------------hhcccccHHHHHHhhhccC
Confidence 23333322233467788888888776543211100000000000000 00000 0111112222223
Q ss_pred cCHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003082 513 PTTTTYNILMKACC--------------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (850)
Q Consensus 513 p~~~t~~~li~~~~--------------~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 578 (850)
+|+.+.-+|-+.|. +..++|.++|.+..+... -|.+.-|-+.-.++..|++.+|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 56666555555332 135789999998888532 377777888889999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003082 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (850)
Q Consensus 579 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~~~a~~a 640 (850)
. -+..+|-.+..+|...|++..|.++|+...+ .+-.-+......|-+++-+.|.+.++.++
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3 2456788899999999999999999998766 44455788899999999999998885553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-14 Score=139.98 Aligned_cols=440 Identities=14% Similarity=0.187 Sum_probs=300.4
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHH-HHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
...+|.++++.-+|+.|...|+..+.-...+++. +.+ |-+..+..=| .+.|-.|..+|.. +..+|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~----LV~-~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFR----LVT-YYNSSNVPFAEWEEFVGMRNFGED--STSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH----HHH-hhcCCCCcchhHHHHhhccccccc--ccccc-------
Confidence 3478999999999999998776665433223222 222 2233332211 1334445444422 22222
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
+.|.+ |.-+|+..|+.+.++..+|.++|+-...+.|.++|++......+.+..+||.+|.+-+-. .-.+++.+
T Consensus 191 -K~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGAV--ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred -ccccH--HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 33444 447889999999999999999999999999999999998877778999999999865433 23789999
Q ss_pred HHhCCCCcCHHHHHHHHHhh--cCChH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH-Hh
Q 003082 282 LRSQNVTLNIYVFNSLMNVN--AHDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (850)
Q Consensus 282 m~~~g~~pd~~t~~~ll~~~--~~~~~----~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~-A~~i~~~m~-~~ 353 (850)
|.+..+.||.+|||+++.+. .|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999974 45544 468999999999999999999999999999988754 333333332 22
Q ss_pred hhcCCccc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 354 EAKGVLKL----DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPNT---ITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 354 ~~~g~~~~----d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~---~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
..+. ++| |..-|...|..|.+..+.+-|.++..-..... +.|+. +-|..+....|.....+.....|+
T Consensus 344 tGK~-fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 344 TGKT-FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred ccCc-ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 222 45567788888999999999999887765321 23332 346778888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcc
Q 003082 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (850)
Q Consensus 423 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (850)
.|.-.-.-|+..+...++++..-.|+++-.-+++..+...|.... + +...++
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r------~--~l~eei-------------------- 474 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR------S--DLREEI-------------------- 474 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh------H--HHHHHH--------------------
Confidence 999887889999999999999999999999999988876653211 0 000000
Q ss_pred cccccccCCCc---CHHHHHHHHHHHhccHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003082 503 SSFDKRFSFKP---TTTTYNILMKACCTDYYRVK-ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (850)
Q Consensus 503 ~~~~~~~~~~p---~~~t~~~li~~~~~~~~~a~-~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 578 (850)
...+......| .-.-+.....-|+-++.++. .--.+|.+..+.| ...+.+.-.+.+.|..++|.++|..+.+++
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11111111223 22334444444444443332 3344555544444 345555666778899999999998886543
Q ss_pred C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003082 579 M----SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 579 ~----~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 614 (850)
- .|.......+++.-...+....|...++-|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2 34444445667777778888888888888866543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=162.59 Aligned_cols=400 Identities=11% Similarity=0.012 Sum_probs=243.2
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
+......|+.++|++++.+... ..|.. ...+..++..+.+.|++++|+.++++.++.. |.+...+..++.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~--~~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~ 91 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRV--HMQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3445588999999999999884 34432 3345566667778999999999999988765 777777888889
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 275 (850)
.+...|++++|+..++.+ |.+.. +..+..++...|++++|+..|+++.+..+ .+...+..+..++...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999887664 66667 88899999999999999999999998533 3566667788888888999999
Q ss_pred HHHHHHHHhCCCCcCHH------HHHHHHHhh-c------CCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHH
Q 003082 276 RAIYEDLRSQNVTLNIY------VFNSLMNVN-A------HDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKA 333 (850)
Q Consensus 276 ~~~~~~m~~~g~~pd~~------t~~~ll~~~-~------~~~---~~a~~l~~~m~~~-g~~pd~~-t~----~~Ll~~ 333 (850)
+..++.... .|+.. ....++... . +++ +.|++.++.+.+. ...|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 23310 111111111 0 112 4455555555532 1112111 11 011223
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHH
Q 003082 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACAN 410 (850)
Q Consensus 334 ~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~ 410 (850)
+...|++++|...|+.+.+. +...|+. .-..+...|...|++++|+..|+++....... ....+..+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33445666666666655441 1000111 11112445555666666666666554432110 12234444445555
Q ss_pred cCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCch
Q 003082 411 AGLVEQAMHLFEEMLQAGC-----------EPNS---QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (850)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~ 476 (850)
.|++++|...++.+.+... .|+. ..+..+...+...|
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g----------------------------- 373 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN----------------------------- 373 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-----------------------------
Confidence 5666666666555554310 0110 11222333333334
Q ss_pred hhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556 (850)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 556 (850)
+.++|.++++++... .+-+...+..+..
T Consensus 374 ---------------------------------------------------~~~eA~~~l~~al~~-~P~n~~l~~~lA~ 401 (765)
T PRK10049 374 ---------------------------------------------------DLPQAEMRARELAYN-APGNQGLRIDYAS 401 (765)
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 444555555554443 1224567778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 557 ACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (850)
Q Consensus 557 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 623 (850)
.+...|++++|++.+++..+. .|| ...+-.....+...|++++|..+++++.+. .|+......
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~ 465 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQR 465 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 888889999999998888874 454 556666667788888899999999888863 465553333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-14 Score=166.74 Aligned_cols=366 Identities=13% Similarity=0.048 Sum_probs=263.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
.......+......|+.++|+.++++..... |.. ...+......+...|++++|+++|++++ ...|+.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al--~~~P~~-- 82 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLP------ARGYAAVAVAYRNLKQWQNSLTLWQKAL--SLEPQN-- 82 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC--
Confidence 4445566777888999999999999998742 221 1112233345568999999999999999 446765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
.++...++..+...|++++|+..++++++.. |+... +..++.++...|++++|+..++.+ |.+..++..
T Consensus 83 ----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 83 ----DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3444556667788999999999999998765 77877 889999999999999999988664 777788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCcCH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCG-----ICGDY---MKSRAIYEDLRSQ-NVTLNI 291 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~ 291 (850)
++..+...|..+.|+..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. .-.|+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 99999999999999999987664 2321 12222333222 22334 7889999988854 223332
Q ss_pred H-HH-HH----HHH-hhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH
Q 003082 292 Y-VF-NS----LMN-VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (850)
Q Consensus 292 ~-t~-~~----ll~-~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~ 363 (850)
. .+ .. +.. ...++.++|+..|+.+.+.+.+ |+. ..-.+...|...|++++|...|+.+.+.. ........
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~ 310 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSD 310 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCCh
Confidence 1 11 11 111 2346899999999999987632 332 22225778999999999999999987521 00000113
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGV-----------TPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 429 (850)
..+..+..++.+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|+.+++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 4566677788999999999999999987531 123 2355677888899999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 430 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+.+...+..+...+...|++++|++.++....
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55667788889999999999999999987653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-13 Score=153.55 Aligned_cols=473 Identities=10% Similarity=0.019 Sum_probs=312.6
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (850)
...|+. +.....-+-...+.|++++|+..|+++++. +|....... ..+..+...|+.++|+..+++..
T Consensus 28 ~~~p~~-~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~--- 95 (822)
T PRK14574 28 VVNPAM-ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQ--- 95 (822)
T ss_pred ccCccc-hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhc---
Confidence 444554 444445566678899999999999999988 554321111 22334446799999999999988
Q ss_pred CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-CCCc-
Q 003082 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRAD- 221 (850)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-p~~~- 221 (850)
.|+... ...+..++..+...|++++|+++++++++.. |+++..+..++..+...++.++|+..++.+ +.++
T Consensus 96 -~p~n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 96 -SSMNIS----SRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred -cCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 343321 3334444567778899999999999999876 877777778888889999999999988775 2222
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 -ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
..+-.++..+...++..+|++.|+++.+.. +-+...+..+..++.+.|-...|+++..+- |+.++=......
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l 241 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL 241 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH
Confidence 223334444444666666999999998863 236777788888889999888888777652 332221111110
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhcCCcccCHhHH----HHHHHHH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVF 373 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~---~~A~~i~~~m~~~~~~g~~~~d~~ty----~~li~~~ 373 (850)
.. ....++++.+..++.. ...++ +.|+.-++.+.... +..++....| --.+-++
T Consensus 242 ---~~----~~~a~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 242 ---ER----DAAAEQVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred ---HH----HHHHHHHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHH
Confidence 00 1111222222111110 11233 33444444444321 1112222222 2345567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCC
Q 003082 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQ 448 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~ 448 (850)
...|++.++.+.|+.|...|.+....+-..+.++|...++.++|..+|..+.... ..++......|.-+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 8899999999999999998876566788999999999999999999999997643 12344446788999999999
Q ss_pred HHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHH---HHHHH
Q 003082 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI---LMKAC 525 (850)
Q Consensus 449 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~---li~~~ 525 (850)
+++|..+++.+..... .... ...+ ......||-..+-. ...++
T Consensus 383 ~~~A~~~l~~~~~~~p-~~~~-~~~~--------------------------------~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 383 LDKAYQFAVNYSEQTP-YQVG-VYGL--------------------------------PGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHHHHHHHHhcCC-cEEe-ccCC--------------------------------CCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999986321 0000 0000 00012344444433 33345
Q ss_pred hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 003082 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFS 604 (850)
Q Consensus 526 ~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~ 604 (850)
.+++.+|++.++++.... +-|......+-+.+...|.+.+|+.+++..... .| +..+....+.++...|++++|..
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 678999999999997642 237888889999999999999999999776654 44 45666777788888899999999
Q ss_pred HHHHHHHCCCCCCHHH
Q 003082 605 LFEEMKHYQIQPNLVT 620 (850)
Q Consensus 605 l~~~m~~~g~~p~~~t 620 (850)
+.+...+. .|+...
T Consensus 506 ~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 506 LTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHhh--CCCchh
Confidence 99888763 465543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-12 Score=145.49 Aligned_cols=422 Identities=11% Similarity=0.034 Sum_probs=306.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC--CCcchHHH--HHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCN--FVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p--~~~~~~~~--li~~~~~~g~~~~ 239 (850)
...++|++++|+..|++.++.. |........++..+...|+.++|+.+++..- .+...+.. ++..|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4558899999999999998765 6654333478888889999999999998863 22233333 4678999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQK 317 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~ 317 (850)
|+++|+++.+..+ .|...+..++..|...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998643 35677778889999999999999999999876 56666664444444 2455569999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHH------HHHHHHH-----HhcCC---HHHHH
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKW---WQMAL 383 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty------~~li~~~-----~~~g~---~~~A~ 383 (850)
.. +-+...+..++.++.+.|-...|+++..+-+.. +.+...-+ ..+++.- ....+ .+.|+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 75 456778889999999999999998877654321 22211111 1111110 01223 34455
Q ss_pred HHHHHHHH-CCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 384 KVKEDMLS-AGVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 384 ~l~~~m~~-~g~~p~~-----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
.-++.+.. .+-.|.. ...--.+-++...|++.++++.|+.|...|.+....+-..+.++|...+++++|..+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555554 2222332 22334566788999999999999999998866566788899999999999999999999
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
.+...... .....++......|..++. +++++|..+
T Consensus 352 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 352 SLYYSDGK------------------------------------------TFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHhhcccc------------------------------------------ccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 88643210 0012344555667788886 478999999
Q ss_pred HHHHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 536 MNEMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 536 ~~~m~~~g~-----------~p--~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
++.+.+.-. .| |-. .+..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987311 12 222 34556777899999999999999998753 5588899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 602 AFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 602 A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
|++.++..... .| +..+......++...|++++|++.+
T Consensus 469 A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 469 AEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999777653 55 4667777788888889888865533
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-11 Score=136.76 Aligned_cols=565 Identities=12% Similarity=0.074 Sum_probs=341.8
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
++...|...++......-.+.+.|+.+.|+..|+++++. +|.....++.++.+. ..+-....+..++..+..+-
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~---l~~~d~~s~~~~~~ll~~ay- 263 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVD---LNFNDSDSYKKGVQLLQRAY- 263 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHH---HHccchHHHHHHHHHHHHHH-
Confidence 455555555555556666778999999999999999998 776555544433332 22334566778888888877
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhC---
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (850)
.+.++. +. ++..+...+.-.|++..+.++.+.+...... +.-...++.++++|=.+|++++|..+|...
T Consensus 264 -~~n~~n---P~---~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 264 -KENNEN---PV---ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred -hhcCCC---cH---HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 344443 22 2333345556679999999998888776522 222345788999999999999999988653
Q ss_pred -CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCcCH
Q 003082 218 -PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 218 -p~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~ 291 (850)
+.+ ...+.-|+..|.+.|+++.|...|+...+. .+.+..+.-.|...|...+ ..+.|..++....+.- ..|.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 222 234455889999999999999999998874 2235566667777777664 4566666666665542 3456
Q ss_pred HHHHHHHHhhc-CChHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH---
Q 003082 292 YVFNSLMNVNA-HDLKFTLEVYK----NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--- 363 (850)
Q Consensus 292 ~t~~~ll~~~~-~~~~~a~~l~~----~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~--- 363 (850)
..|-.+-..+. ++...++..|. .|...+..+-....|.+.......|+++.|...|+......... ..+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~-~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV-ANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh-cCcccccc
Confidence 66666655543 45444454444 34455656778888888888888888888888888776541100 12222
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 364 ---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (850)
Q Consensus 364 ---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 439 (850)
.+--.+...+-..++++.|...|..+.... |+ +..|--+....-..+...+|...+.+..+.. ..++..++.+
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~ 570 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLL 570 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHH
Confidence 222223344445567777777777776652 23 2233333322223456666777666666542 3344444444
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccccccccC--ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccC-----CC
Q 003082 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGE--DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-----FK 512 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 512 (850)
-..+.+...+..|.+-|..........+... ..-|+ ..+..+....... .....++..++..++ -+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~rn~------ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSRNP------EKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhcccccCh------HHHHHHHHHHHHHHHHHHhcCc
Confidence 4455555566656554444333221110000 00000 0000000000000 000001111111111 12
Q ss_pred cCHHHHHH--HHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 003082 513 PTTTTYNI--LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTA 589 (850)
Q Consensus 513 p~~~t~~~--li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~l 589 (850)
.|...-|- ++-+.++++..|..+|.+..+... -+..+|-.+.++|..+|++..|+++|+...+ ..-.-+....+.|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 23333333 344455789999999999998644 2445788899999999999999999998765 4445577788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHcCCC
Q 003082 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY---------------GSLHEVQQCLAVYQDMWKAGYK 653 (850)
Q Consensus 590 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~---------------g~~~~a~~a~~l~~~M~~~g~~ 653 (850)
..++.+.|++.+|.+...........-..+.||..+-..--+ +.+++.+.+.++|.+|...+-.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999888777644333456666655432110 1233456688899999987655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-13 Score=134.84 Aligned_cols=458 Identities=14% Similarity=0.133 Sum_probs=261.7
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCc
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD 221 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~ 221 (850)
|......-++..+.+++..|.-...+.+|+..|+.+++....|+....-..++..+.+++++.+|+++++.. |+-.
T Consensus 192 ~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 192 PEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred hhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 333333345788888999998889999999999999998888887777778899999999999999998774 4322
Q ss_pred -----chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 003082 222 -----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--------- 287 (850)
Q Consensus 222 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------- 287 (850)
.+.+++...|.+.|.|++|+..|+...+. .||..+--.|+-++.--|+-++..+.|..|.....
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 45677888899999999999999998874 48887755555556667899999999999875422
Q ss_pred ---CcCHHHHHHHHHh-hc-----C---ChHHHHHHHHHHHHcCCCCCHH-------------HHH--------HHHHHH
Q 003082 288 ---TLNIYVFNSLMNV-NA-----H---DLKFTLEVYKNMQKLGVMADMA-------------SYN--------ILLKAC 334 (850)
Q Consensus 288 ---~pd~~t~~~ll~~-~~-----~---~~~~a~~l~~~m~~~g~~pd~~-------------t~~--------~Ll~~~ 334 (850)
.|+....|.-|+. +. . +.+.++-.-..++.--+.||-. .|. .-...|
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2444444444432 11 1 1122211111111111122210 000 112357
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 413 (850)
.+.|+++.|.+++.-+.+.. . -..+... --.++..+--.+++..|...-+..+... .-|....+.--+.....|+
T Consensus 430 lk~~d~~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HhccCHHHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 89999999999998877521 1 0111111 1122222222446777777766665332 1233333333334456788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
++.|.+.+++.+...-.-....||+-+ .+-+.|++++|++.|-.+...-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il------------------------------ 554 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL------------------------------ 554 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH------------------------------
Confidence 888888888887654333333455444 3567788888888876543210
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHH--hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~--~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 571 (850)
..+....-.+..-| ..+..+|.+++.+.... ++-|+.+.+-|.+.|-+.|+-..|++.+
T Consensus 555 ------------------~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 555 ------------------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred ------------------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 11122222222222 12344444444333221 2224555555666666666665555554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHc
Q 003082 572 KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS-RYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 572 ~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~-~~g~~~~a~~a~~l~~~M~~~ 650 (850)
-+--.. ++-|..+..-|..-|....-+++|+.+|++..- ++|+.+-|..+|..|. |.|+++. |+++|++..+
T Consensus 616 ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk---a~d~yk~~hr- 688 (840)
T KOG2003|consen 616 YDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK---AFDLYKDIHR- 688 (840)
T ss_pred hhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH---HHHHHHHHHH-
Confidence 333221 233455555555555555555666666655442 4566666665554443 3455443 5555555433
Q ss_pred CCCCCHHHHHHHHHHH
Q 003082 651 GYKANDTYLKELIEEW 666 (850)
Q Consensus 651 g~~p~~~~~~~li~~~ 666 (850)
.++-|...+..|+.-.
T Consensus 689 kfpedldclkflvri~ 704 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIA 704 (840)
T ss_pred hCccchHHHHHHHHHh
Confidence 3444555555555433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-10 Score=128.03 Aligned_cols=515 Identities=13% Similarity=0.086 Sum_probs=340.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+...-..++.+...|++++|..++.++++. +|..+.. +..++.++. .+|+.+.++.++--+. -+.|.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~a---y~tL~~IyE---qrGd~eK~l~~~llAA--HL~p~d-- 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIA---YYTLGEIYE---QRGDIEKALNFWLLAA--HLNPKD-- 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cccchhh---HHHHHHHHH---HcccHHHHHHHHHHHH--hcCCCC--
Confidence 445556677777789999999999999998 6665444 444444443 8899999988865555 667776
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCc-----
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRAD----- 221 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~----- 221 (850)
.+.+..++-...++|.+.+|.-+|.+.++.. |++......-...|.+.|+...|...|.+ .|+.+
T Consensus 207 ----~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 207 ----YELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred ----hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 5667777777788999999999999999876 77766677778889999999999887655 35333
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----------
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---------- 290 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---------- 290 (850)
..-...++.|...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 222245778888888899999998877632 224566788999999999999999999888876322222
Q ss_pred -----------------HHHHHHHHHh-hcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003082 291 -----------------IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (850)
Q Consensus 291 -----------------~~t~~~ll~~-~~~~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m 350 (850)
...+...+.. ..+..+....+...+...+ ..-+...|.-+..+|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2221111111 1123333444445555555 4445678899999999999999999999999
Q ss_pred HHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 003082 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML----- 425 (850)
Q Consensus 351 ~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~----- 425 (850)
.... ..-+...|-.+..+|...|.+++|...|+..+..... +...--+|-..+-+.|+.++|.+.+..+.
T Consensus 441 ~~~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 441 TNRE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred hcCc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 8632 2335779999999999999999999999999876422 45556667777889999999999999864
Q ss_pred ---HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcc
Q 003082 426 ---QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (850)
Q Consensus 426 ---~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (850)
..+..|+.....-..+.+.+.|+.++=.+.-..|............ .-... ....
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~---------~~~k~--r~~~----------- 573 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFP---------RNKKK--RRRA----------- 573 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc---------hHHHH--HHHh-----------
Confidence 2334556666666677888889888866655555433211100000 00000 0000
Q ss_pred cccccccCCCcCHHHHHHHHHHHhc--c---HHHH---HHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHH
Q 003082 503 SSFDKRFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILK 572 (850)
Q Consensus 503 ~~~~~~~~~~p~~~t~~~li~~~~~--~---~~~a---~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~ 572 (850)
....+.+-...+...++.+.-+ + .+.+ ...+..-...|+..+.. .+.-++..+++.+++++|+.+..
T Consensus 574 ---~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 574 ---IAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred ---hccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0000011222222222322221 0 0000 11122222334444433 55678889999999999999999
Q ss_pred HHHHCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCC
Q 003082 573 IMREDGM--SPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QI--QPN-LVTYITLLRARSRYGS 633 (850)
Q Consensus 573 ~m~~~g~--~pd~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p~-~~t~~~li~a~~~~g~ 633 (850)
.+.+... .++. ..=...+.+.+..+++..|.+.++.|... +. .|. ...|+..++.+.+.|+
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9886421 2222 22355677888899999999999999863 21 232 4456656677766654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-11 Score=119.11 Aligned_cols=414 Identities=15% Similarity=0.150 Sum_probs=263.0
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCCCcccHH--HHHHHHHcCCChHHHH-HHhhhCC----CCcchHHHHHHHHHhcCCh
Q 003082 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEF--RIVQLCVNKPDVNLAI-RYACIVP----RADILFCNFVREFGKKRDL 237 (850)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~-~~~~~~p----~~~~~~~~li~~~~~~g~~ 237 (850)
+..+|++.++.-+|+.|...+......+... .++ .|-...++--|+ +.|-.+. ++..+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV-~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLV-TYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH-HhhcCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 4467999999999999998875543222111 111 122222222221 1121111 111111 23333
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
.+ -+|+.. +.+..+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+..- ....++..+|..
T Consensus 196 Ad--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--~~~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--SVGKKLVAEMIS 266 (625)
T ss_pred HH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--hccHHHHHHHHH
Confidence 32 333332 236689999999999999999999999999998889999999999986331 112789999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHH----HHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH-
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLA----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLS- 391 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A----~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~-A~~l~~~m~~- 391 (850)
..+.||..|+|+++++..+.|+++.| .+++.+|++. | +.|...+|..+|..+++.++..+ |..++.++..
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei---G-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---G-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---C-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988765 4566777764 4 89999999999999999887644 4444444432
Q ss_pred ---CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 392 ---AGVTP----NTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNS---QCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 392 ---~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~---~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
..++| |...|..-++.|.+..+.+-|.++..-+.... +.|+. .-|..+..+.|.....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 45567778888888889988988876655321 33432 236677888888888888888888
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
.|...- +-|+..+...++.+.. ++++-.-++
T Consensus 423 ~lVP~~-----------------------------------------------y~p~~~~m~~~lrA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 423 DLVPSA-----------------------------------------------YFPHSQTMIHLLRALDVANRLEVIPRI 455 (625)
T ss_pred Hhccce-----------------------------------------------ecCCchhHHHHHHHHhhcCcchhHHHH
Confidence 876432 3466666666666653 345555666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC-C--------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 536 MNEMRTVGLSPNHISWTILIDACGGSG-N--------------------VEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 536 ~~~m~~~g~~p~~~ty~~li~~~~~~g-~--------------------~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
+.+++..|..-+...-.-++..+|+.. + .+.-+..-.+|.+. .-.....+.+.-.+.
T Consensus 456 w~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 456 WKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 666666554333333333333333332 1 01111111233332 334556677777788
Q ss_pred HcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 595 RSKRLKQAFSLFEEMKHYQI----QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 595 ~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
+.|..++|.++|..+.+.+- .|......-++++-.+..+... |+..++-|....+
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq---A~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ---AIEVLQLASAFNL 592 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCc
Confidence 89999999999988865332 2333334455666666666555 4555555655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-09 Score=119.93 Aligned_cols=295 Identities=12% Similarity=0.128 Sum_probs=216.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+.-.|+.++|.+++.++++.. |....+|+.|+..|.++|+..++....-. -|++...|..+.....+.|++++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3334599999999999998876 88889999999999999999999876533 37788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc------CChHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYK 313 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~------~~~~~a~~l~~ 313 (850)
|.-.|.+.++..+ ++...+-.-+..|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|++.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999753 4555555566789999999999999999998754444444555554322 34477777777
Q ss_pred HHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-----------cC------------CcccCHhHHHHH
Q 003082 314 NMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-----------KG------------VLKLDVFTYSTI 369 (850)
Q Consensus 314 ~m~~-~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~-----------~g------------~~~~d~~ty~~l 369 (850)
.... .+-..+...+++++..|.+...++.|......+..... .+ .+.++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 7655 23345667888999999999999999887776665110 00 01222222 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 370 VKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 370 i~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+-++.+.+..+....+.....+.. +.-+...|.-+..+|.+.|++.+|+.+|..+......-+...|--+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 333444444444444555555554 333566788888999999999999999999887755566778888888888999
Q ss_pred CHHHHHHHHHHHhhc
Q 003082 448 QFDRAFRLFRSWTLS 462 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~ 462 (850)
.+++|.+.|+.....
T Consensus 464 e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-10 Score=121.33 Aligned_cols=284 Identities=10% Similarity=-0.063 Sum_probs=210.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcc-hHHHHHHHHHhcCChHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADI-LFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~-~~~~li~~~~~~g~~~~A~ 241 (850)
..|+++.|.+.+.+..+.. |+....+...+.+..+.|+++.|.+++.. .|.+.. +.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4799999999999877654 54444455567788899999999999877 355443 3344688899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC-----ChHHHHHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQ 316 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-----~~~~a~~l~~~m~ 316 (850)
..++.+.+..+ -+..++..+..+|...|++++|.+++..+.+.++.+.......-..+..+ ..+.+.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998642 46678899999999999999999999999998765333221111122222 1122233444444
Q ss_pred HcC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 317 KLG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 317 ~~g---~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
+.. .+.+...+..+...+...|+.++|.+++++..+ ..||... .....-.....++.+.+.+.++...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 432 123788899999999999999999999999887 2455432 1222222344678889999998887
Q ss_pred HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 391 SAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 391 ~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65322 34 56678889999999999999999954444457999999999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-07 Score=100.01 Aligned_cols=484 Identities=12% Similarity=0.065 Sum_probs=306.0
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-.++...|++ ...|....+. ..-++|+.++.++.+.. |.+...++ ++.+..-|+.|..++++
T Consensus 369 lRKALe~iP~s-v~LWKaAVel----E~~~darilL~rAvecc--p~s~dLwl----------AlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 369 LRKALEHIPRS-VRLWKAAVEL----EEPEDARILLERAVECC--PQSMDLWL----------ALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHhCCch-HHHHHHHHhc----cChHHHHHHHHHHHHhc--cchHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 33488899998 7777655443 55677999999999873 43322222 33466788999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH----hCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
+.+ .-|.. -.+++.+...--.+|..+....++.+-+ ..|... +...|..=+..|...|.+--+..+.
T Consensus 432 aRe--~iptd------~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i-~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 432 ARE--IIPTD------REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI-NRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHh--hCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee-cHHHHHHHHHHHhhcCChhhHHHHH
Confidence 985 35554 4556666666667888888888776533 334332 2234544455555555544333222
Q ss_pred hh----C---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003082 215 CI----V---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 215 ~~----~---p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (850)
.. . .+...+|..-...|.+.+.++-|+.+|...++- .+-+...|...+..--..|..++...+|++....
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-- 579 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-- 579 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence 11 1 112256777777888888888888888877764 2235566777776666677788888888777765
Q ss_pred CcCHHH-HHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh
Q 003082 288 TLNIYV-FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (850)
Q Consensus 288 ~pd~~t-~~~ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ 364 (850)
.|-... |..... ..+|++..|..++.+..+.. +-+...|-.-++.-..+..++.|..+|.+... ..|+..
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~------~sgTeR 652 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS------ISGTER 652 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc------cCCcch
Confidence 333322 222111 24577777777777776654 23566677777777777777777777777654 346666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 443 (850)
.|.--++..--.+..++|.+++++.++. -|+ ...|-.+.+.+-+.++++.|...|..-.+. |+-....|-.+...=
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 6666666666677777777777777654 334 345566666666677777776666554433 333444566666666
Q ss_pred HHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHH
Q 003082 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (850)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~ 523 (850)
-+.|.+-+|..+++.....+ +.+...|-..|.
T Consensus 730 Ek~~~~~rAR~ildrarlkN------------------------------------------------Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN------------------------------------------------PKNALLWLESIR 761 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC------------------------------------------------CCcchhHHHHHH
Confidence 66777777777777655432 344555555555
Q ss_pred HHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
.-. ++.+.|..++.+..+. ++-+...|..-|....+.++-......+++ +.-|....-.+...|....++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 433 4667777777666654 444556777777777776665444444333 34466666677777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 602 A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
|.+.|.+....+ .-+-.+|.-+..-+.++|.-++
T Consensus 836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHH
Confidence 888888887643 2346677777888888887555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-09 Score=117.07 Aligned_cols=277 Identities=14% Similarity=0.036 Sum_probs=211.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHH-HHHHHcCCChHHHHHHhhhC---CCCcchHH--HHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI-VQLCVNKPDVNLAIRYACIV---PRADILFC--NFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~---p~~~~~~~--~li~~~~~~g~~~~A~ 241 (850)
.|++++|.+.+....+.. +.+..++.+ ..+..+.|+++.|..++..+ +++..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765432 222333333 44447899999999999775 22222222 3478899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHhh--cCChHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNVN--AHDLKFTLEVY 312 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~ll~~~--~~~~~~a~~l~ 312 (850)
+.++.+.+.. +-+...+..+...|.+.|+|++|.+++..+.+.+..++. .+|..++... ..+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998864 346788999999999999999999999999988765322 1233333321 22445556666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003082 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (850)
Q Consensus 313 ~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 392 (850)
+.+.+. .+.++.....+...+...|+.++|.+++++..+ ..+|.. -.++.+.+..++.+++++..+...+.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhh
Confidence 666442 355788889999999999999999999988775 244442 22344555679999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 393 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
... |...+..+...|.+.+++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-.
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 6778889999999999999999999999985 7999999999999999999999999998654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-09 Score=106.74 Aligned_cols=421 Identities=14% Similarity=0.115 Sum_probs=253.0
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
++...+.+.-.+.+.|+|++|+.-|++.... .|+-.. .+ +++..+..-|+.+.-.+.|.+++.....|+.-
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a------~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd 345 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIA------AL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD 345 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHh------hh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence 3455555566678899999999999999988 444211 11 22333446689999999999998765555432
Q ss_pred cch----hhhHHHHHHHHh-----hhhc---CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 150 FDG----SGFKLLKNECQR-----LLDS---GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 150 ~~~----~~~~~l~~~~~~-----~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
.+. .--+.+++.... -.+. .+.++|+-.-.++..--+.|+-. .+ .+..++.+...
T Consensus 346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----~g--------~dwcle~lk~s 412 (840)
T KOG2003|consen 346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----AG--------CDWCLESLKAS 412 (840)
T ss_pred cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----cc--------cHHHHHHHHHh
Confidence 110 001112211111 0111 11222222222222211112111 10 11111111111
Q ss_pred CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHhCCCCcCHH
Q 003082 218 PRAD---ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGIC-GDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 218 p~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~-g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
...+ ..-.+-...|.+.|+++.|++++.-..+.+-..-...-|.|-.. |.+. .++.+|.+.-+..... |.+
T Consensus 413 ~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dry 488 (840)
T KOG2003|consen 413 QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRY 488 (840)
T ss_pred hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----ccc
Confidence 1101 11123345678889999998888877664333322333333333 2232 3677777776665532 222
Q ss_pred HHHHHHH----h-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 293 VFNSLMN----V-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 293 t~~~ll~----~-~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
--.++.+ + ..|+++.|.+.|++.+...-.-....||+=+ .+...|++++|++.|-.+... +..++.+.-
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-----l~nn~evl~ 562 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-----LLNNAEVLV 562 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHH
Confidence 2223333 1 2368888988888887654332333444333 456788899999888777653 445666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
.+.+.|-...+...|.+++-+.... ++-|....+-|.+.|-+.|+-.+|.+.+-+--.- ++.+..+..-|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 7778888888888888888766543 3446778888888888999888888877654432 5667778888888888888
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC- 526 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~- 526 (850)
-++++...|+...- +.|+..-|..+|..|.
T Consensus 641 f~ekai~y~ekaal-------------------------------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL-------------------------------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHHHh-------------------------------------------------cCccHHHHHHHHHHHHH
Confidence 88889988876532 4788888888888885
Q ss_pred --ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003082 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (850)
Q Consensus 527 --~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 575 (850)
+++.+|.++++...+. ++-|......|+..+...|. .+|.++-+++.
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 4688899888888877 55577788888888877774 33444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-11 Score=127.28 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=167.7
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|.. ..+...|+..|..+|+|+.|+.+++..++.-.+-.+-.++....++......|...+++++|+.+|+++.....
T Consensus 194 ~~P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34443 77888899999999999999999999987721222233455555555566678899999999999999986533
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC------CCCcccHHHHHHHHHcCCChHHHHHHhhhC-
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------VKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (850)
..-...++....++.+++..|.++|++++|...++..+..... +.-...+..++..|...+.+++|..++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2222345566778888889999999999999998877654321 112223344555566666666666555431
Q ss_pred ------CC-----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003082 218 ------PR-----ADILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SP-NMYICRTIIDVCGICGDYMKSRAIY 279 (850)
Q Consensus 218 ------p~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~ 279 (850)
|. -.-++++|...|..+|++++|+++|+.++... . .+ ....++.|...|.+.+++.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 11 11345556666666666666666665554321 1 11 1233555555555566666666665
Q ss_pred HHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 003082 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (850)
Q Consensus 280 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~ 355 (850)
.+.. .+ |+..| .+-...+|..|...|...|++++|.++.+.+....+
T Consensus 433 ~~~~--------------------------~i---~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 433 EEAK--------------------------DI---MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHH--------------------------HH---HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5432 22 22223 233456899999999999999999999888775433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-07 Score=98.90 Aligned_cols=469 Identities=10% Similarity=0.027 Sum_probs=275.8
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-+++.+-|.| .+.+. +|++...|+.|...++.+.+. -|......+....+.. .+|+.+.+..+.++
T Consensus 399 L~rAveccp~s-~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE------~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 399 LERAVECCPQS-MDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEE------ANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHhccch-HHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHH------hcCCHHHHHHHHHH
Confidence 44578888888 66665 456667889999999988876 3444334444444433 56777777777666
Q ss_pred HHHc----CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHH
Q 003082 139 LNEL----GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRY 213 (850)
Q Consensus 139 ~~~~----~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (850)
.+.. |+..+ .+.+++-+...-..|-.--+..+....+..|..- +....|..-...|.+.+..+-|..+
T Consensus 466 gl~~L~~ngv~i~-------rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 466 GLSELQANGVEIN-------RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHhhcceeec-------HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 5432 33333 3344444444444555555555555555555432 2233455566666666666666655
Q ss_pred hhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 003082 214 ACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (850)
Q Consensus 214 ~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (850)
|.. +|.....|...+..=-..|..++-..+|++.... .+-....|-....-+...|+...|..++.+..+....
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 433 4555566666655555566666666666666654 2233444555555566667777777776666654221
Q ss_pred CHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHH
Q 003082 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTY 366 (850)
Q Consensus 290 d~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty 366 (850)
+...|-.-+.. ....++.|..+|.+.... .|+..+|.--++.-.-.+..++|.+++++..+ .-|+- ..|
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl~ 688 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKLW 688 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHHH
Confidence 33444444443 334666676666666543 35555555555555556667777777766655 23442 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 446 (850)
-.+-..+-+.++++.|...|..-.+. ++-.+-.|-.|...=-+.|.+-.|..+|+...-.+ +-+...|-..|.+=.+.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRA 766 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHc
Confidence 55555666667777776666554332 22234455555555566667777777777666553 44556666667777777
Q ss_pred CCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh
Q 003082 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (850)
Q Consensus 447 g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~ 526 (850)
|..+.|..++.+.... ++.+...|..-|....
T Consensus 767 gn~~~a~~lmakALQe------------------------------------------------cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE------------------------------------------------CPSSGLLWAEAIWLEP 798 (913)
T ss_pred CCHHHHHHHHHHHHHh------------------------------------------------CCccchhHHHHHHhcc
Confidence 7777776666554432 1222223333332222
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (850)
Q Consensus 527 ~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~ 606 (850)
....+ -...+.+++ +.-|..+.-++...|....++++|.+.|.+..+.+ +-+-.+|.-+..-+.++|.-++-.+++
T Consensus 799 ~~~rk-Tks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 799 RPQRK-TKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred Ccccc-hHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 11000 011123333 34566777777788888888999999999998754 334568888888899999888888888
Q ss_pred HHHHH
Q 003082 607 EEMKH 611 (850)
Q Consensus 607 ~~m~~ 611 (850)
.....
T Consensus 875 ~~c~~ 879 (913)
T KOG0495|consen 875 KKCET 879 (913)
T ss_pred HHHhc
Confidence 87765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=93.34 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003082 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (850)
Q Consensus 581 pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~ 630 (850)
||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=128.85 Aligned_cols=225 Identities=17% Similarity=0.121 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--h
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~ 301 (850)
|..+.......++++.|+..|+++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+.. .
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHH
Confidence 333445555566666666666666654332 44455555555 46666666666666554432 333333444433 2
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCH
Q 003082 302 AHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~ 379 (850)
.++++.+.++++.+... ..+.+...|..+...+.+.|+.++|.+.|++..+. .| |....+.++..+...|+.
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCh
Confidence 35666666666665542 23567778888888899999999999999998873 45 477788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+++..++....+.. ..|...+..+..+|...|+.++|+.+|++..+.. +.|......+.+++...|+.++|.++.++.
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99888888877654 3456678888999999999999999999988763 457778888899999999999999888765
Q ss_pred h
Q 003082 460 T 460 (850)
Q Consensus 460 ~ 460 (850)
.
T Consensus 275 ~ 275 (280)
T PF13429_consen 275 L 275 (280)
T ss_dssp -
T ss_pred c
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-09 Score=112.72 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
|...+..+...|.+.|++++|.+.|+.+.+. .|+...|-.+...+.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666666666666666653 5666666666666666666666666666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-08 Score=105.27 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+....+.+-++|.|++|++.|..++...++ ... .+.+....|...|+|+++++.--+++ .+.|+-
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epi------FYsNraAcY~~lgd~~~Vied~TkAL--El~P~Y-- 182 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPI------FYSNRAACYESLGDWEKVIEDCTKAL--ELNPDY-- 182 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--Cch------hhhhHHHHHHHHhhHHHHHHHHHHHh--hcCcHH--
Confidence 455667778888999999999999999988544 211 12334445667899999999988888 567764
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh-CCCCcchHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRADILFCNFVR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~p~~~~~~~~li~ 229 (850)
.-+++..+..+-..|++.+|+.=.....-.+-..+.. ...++...++.--...+.+-+.. -++.-. ..+.|.
T Consensus 183 ----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s--~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~ 255 (606)
T KOG0547|consen 183 ----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNAS--IEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIA 255 (606)
T ss_pred ----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccch--hHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHH
Confidence 4456666666777788888875443332221111110 11111111111111122222221 111111 111222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC-CCcC-------------
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-----GDYMKSRAIYEDLRSQN-VTLN------------- 290 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g-~~pd------------- 290 (850)
.|...=.-+- .+ .+.. +.......+..++... ..|..|.+.+.+-.... ..++
T Consensus 256 syf~sF~~~~---~~-~~~~----~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 256 SYFGSFHADP---KP-LFDN----KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred HHHhhccccc---cc-cccC----CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 2221100000 00 0000 0001111111111110 12333333332211100 0011
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH
Q 003082 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (850)
Q Consensus 291 ~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li 370 (850)
...+...+....|+.-.+.+-|+..++....++ ..|--+..+|....+.++-+..|....++. +-|..+|..-.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRg 401 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRG 401 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHH
Confidence 011112222345677778888888877543222 226667777888888888888888887742 23455677666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHH
Q 003082 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (850)
Q Consensus 371 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 450 (850)
..+.-.+++++|..=|++..+.... ++..|--+--+..+.+.+++++..|++.+++ ++-.+.+|+.....+...++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 7777778888888888888776543 5666776766777888888888888888776 4556677888888888888888
Q ss_pred HHHHHHHHHhh
Q 003082 451 RAFRLFRSWTL 461 (850)
Q Consensus 451 ~A~~l~~~m~~ 461 (850)
.|.+.|+...+
T Consensus 480 ~A~k~YD~ai~ 490 (606)
T KOG0547|consen 480 KAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHh
Confidence 88888876554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=115.89 Aligned_cols=285 Identities=10% Similarity=-0.049 Sum_probs=200.3
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD-EEFRIVQLCV 202 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 202 (850)
...|+++.|.+.+.+..+ ..|+. .-.++-++.....+|++++|.+.+++..+.. |+... .....+..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~--~~~~~------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD--HAAEP------VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhh--cCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 478999999999998874 35543 2233344555667899999999999987644 44432 2333578889
Q ss_pred cCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHH
Q 003082 203 NKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC---GICGDYMKS 275 (850)
Q Consensus 203 ~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A 275 (850)
..|+++.|+..++. .|.+..++..+...|...|++++|.+.+..+.+.+..+.......-..++ ...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988766 48888889999999999999999999999999886543222211111211 223333333
Q ss_pred HHHHHHHHhCCCC---cCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChHHHHHHH
Q 003082 276 RAIYEDLRSQNVT---LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 276 ~~~~~~m~~~g~~---pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t---~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
.+.+..+.+.... .+...+..+... ..|+.+.|.+++++..+.. ||... .....-.....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 4455555543211 244555555444 5689999999999998864 34332 122222233457788888888
Q ss_pred HHHHHhhhcCCcccC-H--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 348 GEVKHLEAKGVLKLD-V--FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d-~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
+...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 877762 344 3 5567888999999999999999996444445789999999999999999999999999986
Q ss_pred HH
Q 003082 425 LQ 426 (850)
Q Consensus 425 ~~ 426 (850)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 53
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-12 Score=91.23 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003082 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (850)
Q Consensus 546 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~ 595 (850)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=124.75 Aligned_cols=225 Identities=15% Similarity=0.176 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-hcC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~ 303 (850)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.|+++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 34666677777777777775544332 2234445555666666677777777777777654322 22223333332 233
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
++++|.+++....+.. ++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444544444433221 23333444444445555555555555444321 112233444444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+.+++.++.... |....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|+.
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 555444443211 23444444444444444444444444444332 22333344444444444444444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=115.17 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=118.5
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCCCCcccHHHHHHHHHcCCCh-HHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDV-NLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
+.+++..|.+.+++++|..+|+.+.+.. ...++...+..++--+-+.-.. -.|..+.+..|..+.+|+.+++.|.-++
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 4445555566666666666666655432 1223333333333222111111 1233334444555566666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-----hcCChHHHH
Q 003082 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTL 309 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-----~~~~~~~a~ 309 (850)
+.+.|++.|++.++. .| ..++|+.+..=+.....+|.|...|+..+ ..|...||+.... ..++++.|.
T Consensus 436 dh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHH
Confidence 666666666666653 23 45556665555555666666666665544 3344444443321 123444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
-.|+...+.+ +-+.+....+...+-+.|+.|+|+++|++...+. +-|...--.....+...+++++|+..++++
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4444444433 2233334444444444455555555555444321 112222222233344444455555555554
Q ss_pred HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 390 LSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 390 ~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++. .| +...|..+...|-+.|+.+.|+.-|..+.+
T Consensus 584 k~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 584 KEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 442 22 233344444444444555555444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-06 Score=89.51 Aligned_cols=417 Identities=12% Similarity=0.104 Sum_probs=300.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
..++++..|..++++.+... -.+...|..-+..=.+......|..+++. +|..+..|+--+.+=...|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 45677788888888887654 44556666666666677777778777655 5777788888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHc-
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL- 318 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~- 318 (850)
++|++-.+ ..|+...|++.|+.=.+.+.++.|..+|+...-- .|++.+|---... ..|....+..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99998877 5799999999999999999999999999998753 5888888766654 567888888888877653
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCH---HHHHHH-----HH
Q 003082 319 GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW---QMALKV-----KE 387 (850)
Q Consensus 319 g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~---~~A~~l-----~~ 387 (850)
|- ..+...+++....=.++..++.|.-+|.-.... ++.+ ...|..+...=-+-|+. +++.-- ++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 21 112233444444444677888999999877763 2222 34455555444444554 444322 34
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HHhCCHHHHHHHHH
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLFR 457 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll-----~~~---~~~g~~~~A~~l~~ 457 (850)
.+.+.+ ..|-.+|-..++.-...|+.+...++|+..+.. ++|-.. .|.-.| -+| ....+.+.+.++|+
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445444 337778888888888899999999999999875 444221 121111 111 24578888888887
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc------cHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT------DYYR 531 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~------~~~~ 531 (850)
...+. ++...+||.-+--.|+. ++..
T Consensus 391 ~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 391 ACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 76542 45667788777666652 5788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 532 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|.+++.... |..|-..+|-..|..=.+.++++.+..++++..+.+ +-|..+|.-....=...|+.+.|..+|+-..+
T Consensus 423 ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 423 ARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 998888765 568999999999999999999999999999999865 33677888877777788999999999999887
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 612 YQ-IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 612 ~g-~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
.. +..-...|.+.|+-=...|.++. +..+|+++.+
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~ 535 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLD 535 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHH
Confidence 42 22345666777766667787666 6668888876
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=123.92 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=162.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
.++-.+...|+.||.+||..||.-||..|+++.|- +|.-|+- +. +..+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~---ks-Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI---KS-LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc---cc-ccccchhHHHHHhcccccccccCCC------
Confidence 34555666777777777777777777777777777 7766653 12 4556667777777777777766555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHH----cCC-----------------CCCHHHHHHHHHHHHH
Q 003082 390 LSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQ----AGC-----------------EPNSQCCNILLQACVE 445 (850)
Q Consensus 390 ~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~----~g~-----------------~p~~~~~~~ll~~~~~ 445 (850)
.|...||+.|..+|...||+.. ..+.+..+.. .|+ -||..+ .+....-
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~ 151 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVL 151 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHH
Confidence 5677777777777777777544 2221111111 121 122111 1222233
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
.|-++.+.+++..+..... ..|-.+ ++.-+
T Consensus 152 eglwaqllkll~~~Pvsa~----------------------------------------------~~p~~v----fLrqn 181 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAW----------------------------------------------NAPFQV----FLRQN 181 (1088)
T ss_pred HHHHHHHHHHHhhCCcccc----------------------------------------------cchHHH----HHHHh
Confidence 4445555554443321110 011111 23333
Q ss_pred hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003082 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (850)
Q Consensus 526 ~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 605 (850)
.....-.+++.+......-.|+..+|.++++.-.-.|+++.|..++.+|.+.|++.+..-|..|+-+ .+...-+..+
T Consensus 182 v~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~v 258 (1088)
T KOG4318|consen 182 VVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFV 258 (1088)
T ss_pred ccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHH
Confidence 3322333334333322211589999999999999999999999999999999999999888888877 8888889999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 606 ~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
.+-|.+.|+.|+..|+...+-.+...|...
T Consensus 259 lrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 259 LRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 999999999999999999988888765533
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-07 Score=95.76 Aligned_cols=427 Identities=14% Similarity=0.058 Sum_probs=270.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..+++...+.+.+.+++ -.|++ -++++-.+..+...|+-++|......-+... +.+.++|..++-.+-..
T Consensus 19 E~kQYkkgLK~~~~iL~--k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK--KFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHhHHHHHHHHHH--hCCcc------chhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhh
Confidence 56888888888888886 35554 2233333444556799999999888766544 77889999999999999
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 205 ~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
.+|++|++.|..+ |++..++..|.-.-.+.|+++.......+..+.. +.....|..++.++.-.|++..|..+++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 6677888888888888999999999888888742 2345568888888889999999999999
Q ss_pred HHHhCCC-CcCHHHHHHHHH--------hhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003082 281 DLRSQNV-TLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEV 350 (850)
Q Consensus 281 ~m~~~g~-~pd~~t~~~ll~--------~~~~~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~g~~~~A~~i~~~m 350 (850)
+..+... .|+...|..... ..+|..+.|++.+..-... ..|-. .--+-...+.+.+++++|..+|..+
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 9887642 355554433222 2345666666655544332 12322 2234456677888999999999888
Q ss_pred HHhhhcCCcccCHhHHHHH-HHHHHhcCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 351 KHLEAKGVLKLDVFTYSTI-VKVFADAKWWQMAL-KVKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (850)
Q Consensus 351 ~~~~~~g~~~~d~~ty~~l-i~~~~~~g~~~~A~-~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 425 (850)
.. ..||..-|.-. ..++.+-.+.-+++ .+|....+.- -.|-....+.+. .....+..-.++..+.
T Consensus 246 l~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 246 LE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLL 315 (700)
T ss_pred Hh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHh
Confidence 76 34666655544 44444333333343 5555544321 111111111111 1122344555666777
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccccc
Q 003082 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (850)
Q Consensus 426 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (850)
+.|+++ ++..+...|-.-...+ ++++....-. ..+.....+.+
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~------------------------------~~L~~~~~f~~ 358 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQ------------------------------HSLSGTGMFNF 358 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHH------------------------------hhcccccCCCc
Confidence 777654 3444444432222111 2222211000 00000001111
Q ss_pred cccc-CCCcCHHHHHHHHHH--H--hccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 003082 506 DKRF-SFKPTTTTYNILMKA--C--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (850)
Q Consensus 506 ~~~~-~~~p~~~t~~~li~~--~--~~~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 579 (850)
.... .-+|.+..|...--+ + +++.+.|...++....+ .|+.+ .|..=...+.+.|++++|..++++..+..
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 1111 125666555543332 2 36789999999988774 56654 66666788999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003082 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 580 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 614 (850)
.||...=..-.+-..++++.++|.++.....+.|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45666555677778889999999999999988775
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=115.12 Aligned_cols=299 Identities=10% Similarity=-0.013 Sum_probs=216.0
Q ss_pred hhHHHHHHHHHhhc--CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcc
Q 003082 71 NDYYADMASKLAKD--GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 71 ~~~~~~l~~~l~~~--g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
...+..++..|... =..++|+.+|+.......+- -..+..+-.+|...+++++|..+|+.+. .+.|-.
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt--------~wvl~q~GrayFEl~~Y~~a~~~F~~~r--~~~p~r 386 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT--------GWVLSQLGRAYFELIEYDQAERIFSLVR--RIEPYR 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccc
Confidence 34455555555433 45678999999855552221 1223345567889999999999999999 557765
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHH-HHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcch
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV-LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL 223 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~ 223 (850)
.....++.+.+ .++ .+ +-++..+.+ +... .|+.+.+|-.++..|.-+++.+.|++.|+++ |....+
T Consensus 387 v~~meiyST~L---WHL---q~-~v~Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa 457 (638)
T KOG1126|consen 387 VKGMEIYSTTL---WHL---QD-EVALSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA 457 (638)
T ss_pred ccchhHHHHHH---HHH---Hh-hHHHHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh
Confidence 55544454443 332 22 233444433 3333 3788899999999999999999999999885 667788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHH--HHHHHh
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVF--NSLMNV 300 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~--~~ll~~ 300 (850)
|+.++.-+....++|.|...|...+.... .+-.+|--|.-.|.+.++++.|+-.|+...+.+ |.. +.. ...+.-
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQH 534 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHH
Confidence 99999999999999999999998876321 133355567778999999999999999988653 432 222 222223
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWW 379 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~ 379 (850)
..|+.++|+++|++...... -|+..--.-...+...++.++|+..++++++ +.|+ ...|-.+...|-+.|+.
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHccc
Confidence 45789999999999988763 3554444566677788999999999999998 4455 56788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 003082 380 QMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~ 398 (850)
+.|+.-|..+.+...++..
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999999999887655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-07 Score=92.04 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=192.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-- 299 (850)
..++..+..+-+.|..+.|+..|...... .| ..|.+-+....-.-+.+.+..+.. |...|.......+.
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P--~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNR--YP--WFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhc--CC--cchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence 44555566777788888888888877653 12 233333332222223333322221 11222111111111
Q ss_pred hhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC
Q 003082 300 VNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (850)
Q Consensus 300 ~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g 377 (850)
++. +..+++++-...+...|++-+...-+....+.-...+++.|+.+|+++.+.. .- ---|..+|+.++ |.++.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PY-Rl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PY-RLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CC-cchhHHHHhHHH--HHHhh
Confidence 221 3666777777777777776555555555555666778888888888887621 11 012556777766 33433
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 378 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
+-.- ..+.+-...--+--..|..++.+-|+-.++.+.|...|+..++.+ +-....|+.|-+-|....+...|.+-++
T Consensus 312 ~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221 111111111012234567777777777888888888888887753 3344567777788888888888888887
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
...+-. +.|-..|-.+-.+|. +-..-|.-.
T Consensus 389 rAvdi~------------------------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 389 RAVDIN------------------------------------------------PRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHhcC------------------------------------------------chhHHHHhhhhHHHHHhcchHHHHHH
Confidence 665421 345555555555554 234455555
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 536 MNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 536 ~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|++..+ ++| |...|.+|.++|.+.+++++|++.|......| ..+...|..|.+.|-+.++..+|...|++-.+
T Consensus 421 fqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 421 FQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666555 445 56688888888888888888888888877765 23557777788888888888888777776554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-08 Score=106.71 Aligned_cols=544 Identities=14% Similarity=0.123 Sum_probs=287.3
Q ss_pred ccchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHH
Q 003082 56 QTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (850)
Q Consensus 56 ~~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (850)
+++..+.....|+. .+|.+++..||..|+.+.|- +|.-|.-...... -......+.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred HHHHHHHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC--
Confidence 44566677888884 88999999999999999998 7776654321111 111111222222333332221
Q ss_pred HHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHH-HHhC--CCC------------------CCCcccH
Q 003082 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV-LEEF--RLP------------------VKELDEE 194 (850)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-~~~~--~~~------------------~~~~~~~ 194 (850)
.|. -+++.++...|...|+..- ++..++ |... .+. |......
T Consensus 80 ---------ep~-------aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda 142 (1088)
T KOG4318|consen 80 ---------EPL-------ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA 142 (1088)
T ss_pred ---------CCc-------hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH
Confidence 121 2334444444555666543 222222 2111 111 2122222
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 272 (850)
.+.+...+-.|-++.+++.....|..... +...+.-.... +....++.+......-.|+..+|.++++.-.-.|+.
T Consensus 143 ~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 143 ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 34455556677778888877777654311 11112222222 223333433333321248999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
+.|..++.+|.+.|+..+.+-|-.|+.+ .++..-+..++.-|...|+.|+..|+...+-.+.++|....+.+..+.-
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~-- 297 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA-- 297 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--
Confidence 9999999999999999999888888877 7788888899999999999999999999888888866633332221100
Q ss_pred hhhcCCcccCHhHHHHHHHHHHhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQM-----ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 353 ~~~~g~~~~d~~ty~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.......+..+.++...+.+++. ....+.+..-.|+.-....|...+. ...+|.-++..++-..|..-
T Consensus 298 ------hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 298 ------HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred ------hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCC
Confidence 01123344444444322222222 2333333333454444444544333 33467777777777766532
Q ss_pred C--CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhh-hhhhcccc-cCCCCCcCCCcc
Q 003082 428 G--CEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-EHKDKQSI-TNTPNFVPNSHY 502 (850)
Q Consensus 428 g--~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 502 (850)
- ..+ ++..|..++.-|.+.-+..-...++. ...+.....+.. .+....+. ....+++. ....+...+ ..
T Consensus 371 t~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se---~tp~vsell~~lrkns~lr~lv~Lss~-El 444 (1088)
T KOG4318|consen 371 TLRDSGQNVDAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSE---DTPRVSELLENLRKNSFLRQLVGLSST-EL 444 (1088)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchh---hhHHHHHHHHHhCcchHHHHHhhhhHH-HH
Confidence 1 222 34456666655554332222222221 000000000000 00000000 00000000 000000000 00
Q ss_pred cccccc--cCCCcCHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-
Q 003082 503 SSFDKR--FSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED- 577 (850)
Q Consensus 503 ~~~~~~--~~~~p~~~t~~~li~~~~~~--~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~- 577 (850)
.....- ....+--..-+.++..|+.. ..++...-+..... .-| ..|..||+-++...+++.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 000000 00011122234555566542 33444332222221 111 56888888888888888888888887642
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 578 -GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 578 -g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.+..|..-+..+.+.+.+.+...++..++++|.+.- ..| ...++--+++.....|..+..++ +++-+...|+
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk---l~d~lvslgl 596 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK---LADILVSLGL 596 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH---HHHHHHHhhh
Confidence 344566678888888888888888888888887621 223 25566667777777787666444 4444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-06 Score=87.91 Aligned_cols=496 Identities=14% Similarity=0.149 Sum_probs=292.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..|......+.++|+...-...|++++..-+.-. |--.+..+..-+. ..|-++-++.+|++-+ .+.|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq---H~rIW~lyl~Fv~---~~~lPets~rvyrRYL--k~~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ---HDRIWDLYLKFVE---SHGLPETSIRVYRRYL--KVAPEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh---hccchHHHHHHHH---hCCChHHHHHHHHHHH--hcCHHH--
Confidence 45666677788888999999999998887632211 1111333322222 5577789999999999 567754
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-----CCCcccHHHHHHHHHcCC------ChHHHHHH-hhhCC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKP------DVNLAIRY-ACIVP 218 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~------~~~~A~~~-~~~~p 218 (850)
.+-++. .++..+++++|.+.++.++..... +.+...|..+.....+.- +++..++- ...++
T Consensus 172 ----~eeyie---~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 ----REEYIE---YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred ----HHHHHH---HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 222332 234679999999999887643211 334555666655554432 23332221 12223
Q ss_pred CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 003082 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (850)
Q Consensus 219 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A 275 (850)
+. ...|++|.+-|.+.|.++.|..+|++.+..- .++.-|..+-++|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 32 2678999999999999999999999887642 34444555555555321 12233
Q ss_pred HHHHHHHHhCC-----------CCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcC
Q 003082 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (850)
Q Consensus 276 ~~~~~~m~~~g-----------~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd------~~t~~~Ll~~~~~~g 338 (850)
+.-|+.+...+ -.-++.+|..-+..+.++..+-...|.+..+. +.|- ...|..+.+.|...|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 33444443321 12345556666666666777777778777653 2221 345778889999999
Q ss_pred ChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHH
Q 003082 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT----------P-------NTITW 401 (850)
Q Consensus 339 ~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~ty 401 (850)
+++.|..+|++..+..-.+ +.-=..+|..-...=.+..+++.|+++.+.....--. | +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999876511000 0000224444444445667788888877665422111 1 22346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhh
Q 003082 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (850)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 481 (850)
+..++.--..|-++....+++.+++..+.-.....|-.+ .+-...-++++++++++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 666666667788888888888888765432222222111 223445567777777642210
Q ss_pred hhhhhcccccCCCCCcCCCcccccccccCCCcCH-HHHHHH----HHHHhc-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNIL----MKACCT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~l----i~~~~~-~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
+. -|++ ..|+.. +.-|++ .++.|..+|++..+ |++|...-+--|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 00 2222 234443 444544 68999999999999 7777554332232
Q ss_pred HH--HHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HH
Q 003082 556 DA--CGGSGNVEGALQILKIMREDGMSPDV--VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR---AR 628 (850)
Q Consensus 556 ~~--~~~~g~~~~A~~l~~~m~~~g~~pd~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---a~ 628 (850)
.+ =-+.|....|+.++++... ++++.. ..||..|+--...=-+.....+|++..+. -||...-...|+ .=
T Consensus 592 YA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlE 668 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLE 668 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHh
Confidence 22 2346888999999999754 344443 46888887655544455566777777763 466544433333 23
Q ss_pred HhcCChHHHHH
Q 003082 629 SRYGSLHEVQQ 639 (850)
Q Consensus 629 ~~~g~~~~a~~ 639 (850)
++.|..+.|+.
T Consensus 669 tklGEidRARa 679 (835)
T KOG2047|consen 669 TKLGEIDRARA 679 (835)
T ss_pred hhhhhHHHHHH
Confidence 45566665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-08 Score=96.17 Aligned_cols=284 Identities=12% Similarity=0.079 Sum_probs=211.7
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc--------chHHHHHHHHHhcCChHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~--------~~~~~li~~~~~~g~~~~ 239 (850)
..+.++|+++|-.|++.. |....+...+++.|-+.|..+.|++++..+-.++ .+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467799999999999865 7777788899999999999999999987752222 344568899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH----HHHHHHHh--hcCChHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY----VFNSLMNV--NAHDLKFTLEVYK 313 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~--~~~~~~~a~~l~~ 313 (850)
|..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.|-++..+ .|.-|-.. ...+++.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 345678899999999999999999999998876554432 22222222 1248889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 314 ~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
+..+.+ +-.+..--.+-+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 988765 223444445678888999999999999999872 344 34678899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhcccc
Q 003082 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (850)
Q Consensus 392 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~ 465 (850)
....++ .-..|-.......-.+.|...+.+-+.. +|+...+..+|+.-.. .|...+...+++.|....+.
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 644333 3333333333344456666666555554 7999999999987653 35567777788888766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-08 Score=99.43 Aligned_cols=305 Identities=11% Similarity=0.010 Sum_probs=161.7
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.++|++++|+..|.+++ .+.|+..+ .+-+....|...|+|++.++.-.+.++.. |+-.-.++.-.+++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI--~l~p~epi------FYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAI--ELCPDEPI------FYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhcccHHHHHHHHHHHH--hcCCCCch------hhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 448899999999999999 56887522 23344445667899999999888887765 777677777788888
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH--------HHHHHHHHHh-CCC--CCCHHHHHHHHHHHHhcCC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS--------ALRAYDASKK-HLS--SPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~--------A~~~~~~m~~-~g~--~p~~~~~~~li~~~~~~g~ 271 (850)
..|+.++|+.-. +-..+...|....-.-- |....++-.+ .+. -|+....++..+.+...-.
T Consensus 195 ~lg~~~eal~D~--------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFDV--------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHhh--------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 888888876421 11112222221111111 2222222222 222 1333332332222211100
Q ss_pred HHHHHHHHHHHHhCCCCcCHHH---HHHHHHhhcCChHHHHHHHHHHHH---cCCCCC---------HHHHHHHHHHHHH
Q 003082 272 YMKSRAIYEDLRSQNVTLNIYV---FNSLMNVNAHDLKFTLEVYKNMQK---LGVMAD---------MASYNILLKACCL 336 (850)
Q Consensus 272 ~~~A~~~~~~m~~~g~~pd~~t---~~~ll~~~~~~~~~a~~l~~~m~~---~g~~pd---------~~t~~~Ll~~~~~ 336 (850)
..+...+-+-|... +..|.......+..+.+.+.+-.. .....+ ..+...--..+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 00000000001100 001111101122222222221110 000001 1111111122234
Q ss_pred cCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 337 AGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
.|+...|.+-|+....+ .|. ...|--+-..|....+-++..+.|++..+.+.. |..+|..-...+.-.++++
T Consensus 339 ~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred cCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 57777888888877763 222 223666667788888888888888888776654 6667776666677777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+|..=|++.+... +-+...|--+.-+..+.+++++++..|++..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877643 23445566666666677777777777776553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-09 Score=112.12 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=174.8
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
.+..+...|..+|+++.|...++++++.-..-....+..+...+-..+..|...+++.+|+.+|++++......-+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G---- 276 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG---- 276 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC----
Confidence 3344666788999999999999999865111111223333444444777888999999999999988764321111
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCHH-HHHHHHHHHH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LSS-PNMY-ICRTIIDVCG 267 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~~-~~~~li~~~~ 267 (850)
..+ |....++++|..+|++.|++++|...+++..+. |.. |.+. .++.++..|.
T Consensus 277 -----------~~h---------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 277 -----------EDH---------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred -----------CCC---------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 111 111266778888888888888888877765432 222 3333 3677778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
..+++++|..+++... +++.........--.-+++.|-..|...|++++|.++|
T Consensus 337 ~~~~~Eea~~l~q~al--------------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKAL--------------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HhcchhHHHHHHHHHH--------------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999999998543 44442222111123468999999999999999999999
Q ss_pred HHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CC-HHHHHHHHHHHHHcCCHHHHH
Q 003082 348 GEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDML----SAGVT-PN-TITWSSLINACANAGLVEQAM 418 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~-~~ty~~li~~~~~~g~~~~A~ 418 (850)
++..++.+.+.-.-+ ...++.|-..|.+.+++++|.++|.+.. ..|.. |+ ..+|..|...|...|+++.|.
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 998886544322212 3456777777888888888888887643 22321 22 456777888888888888888
Q ss_pred HHHHHHH
Q 003082 419 HLFEEML 425 (850)
Q Consensus 419 ~l~~~m~ 425 (850)
++.+.+.
T Consensus 471 ~~~~~~~ 477 (508)
T KOG1840|consen 471 ELEEKVL 477 (508)
T ss_pred HHHHHHH
Confidence 7777665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-06 Score=83.70 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=181.0
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCChHHH
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSA 240 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~--~li~~~~~~g~~~~A 240 (850)
..+.+.|....|+..|...+... |-.-.+|..+...+ -+.+.+..+...+|.+...+. -+..+|......+++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777776655432 43333333333332 122222222223343332222 256667777777888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhhcCChHH---HHHHHHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKF---TLEVYKNM 315 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~---a~~l~~~m 315 (850)
++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++.+....-.. |..+++ +
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i 325 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I 325 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h
Confidence 888888877777555555555555556677888888888888876321 2567777777664432111 222221 1
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003082 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (850)
Q Consensus 316 ~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 395 (850)
. +--+.|+.++.+-|.-.++.++|...|+...++. +.....|+.|.+-|...++...|..-++...+-+..
T Consensus 326 --d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 326 --D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred --c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 1 2234567677777777788888888888877631 223556777778888888888888888888876543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 396 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+-|+....
T Consensus 397 -DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 397 -DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred -hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 77788888888888888888888888887642 34667788888888888888888888876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-09 Score=119.40 Aligned_cols=219 Identities=9% Similarity=-0.048 Sum_probs=142.1
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHH---HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHH
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIV---KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~ 161 (850)
+.+++|+.+|+++++. +|........+..+..... .....+++++|...++++. .+.|+. ..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al--~ldP~~------~~a~~~l 344 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT--ELDHNN------PQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH--hcCCCC------HHHHHHH
Confidence 4578999999999988 6654333222221111111 0124466899999999999 567875 3344445
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
+..+...|++++|+..+++.++.. |++...++.++..+...|++++|+..++.+ |.+...+..++..+...|++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 556667899999999999998876 877777888888888888888888877664 54444444455556667888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHhhcCChHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~a~~l~~~m~ 316 (850)
++|+..+++..+...+.+...+..+..++...|++++|...+.++... .|+...... +...+.+..+.+...++.+.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll 500 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888887765432224455667777777888888888888776543 333333322 22234444455555555554
Q ss_pred H
Q 003082 317 K 317 (850)
Q Consensus 317 ~ 317 (850)
+
T Consensus 501 ~ 501 (553)
T PRK12370 501 E 501 (553)
T ss_pred H
Confidence 3
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-09 Score=104.13 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
....+..++..+...|++++|+..++++++. .|..... .......+...|++++|.+.|+++.+. .|+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLA------YLALALYYQQLGELEKAEDSFRRALTL--NPNN- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC-
Confidence 3678888999999999999999999999887 4443221 222334566889999999999999953 4543
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~ 225 (850)
...+...+..+...|++++|+..+++.......+.....+..++..+...|++++|..++... |.+...+.
T Consensus 99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 234555566677889999999999998764322333334555566666666666666655442 33344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666666666666666666665554 22344444555555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-09 Score=118.77 Aligned_cols=236 Identities=9% Similarity=-0.012 Sum_probs=170.5
Q ss_pred hccccCCcchhhHHHHHHHHHh---------hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhH
Q 003082 61 STVRRDLSSRNDYYADMASKLA---------KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC 131 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~---------~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (850)
+++..+|+. ...|..++..+. ..+++++|...++++++. +|+...... .++ ..+...|++++
T Consensus 286 ~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~---~lg---~~~~~~g~~~~ 356 (553)
T PRK12370 286 QCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALG---LLG---LINTIHSEYIV 356 (553)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHH---HHH---HHHHHccCHHH
Confidence 467889988 777777776554 235589999999999998 555443322 222 23447899999
Q ss_pred HHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHH
Q 003082 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (850)
Q Consensus 132 A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (850)
|+..|++++ .+.|+. ...+...+..+...|++++|+..+++.++.. |.....+...+..+...|++++|+
T Consensus 357 A~~~~~~Al--~l~P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 357 GSLLFKQAN--LLSPIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHH--HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHH
Confidence 999999999 557875 3455566677788999999999999998875 666555555566677789999999
Q ss_pred HHhhhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 003082 212 RYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ- 285 (850)
Q Consensus 212 ~~~~~~-----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 285 (850)
..++.+ |.....+..+...|...|++++|...+.++... .+.+....+.+...|...| ++|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 888654 344556778999999999999999999987654 2224455666777777777 5888888877653
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g 319 (850)
.-.+....+..++.+..|+.+.+..+ +++.+.|
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 23344455566777777777776666 7776643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-07 Score=94.38 Aligned_cols=278 Identities=10% Similarity=0.021 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHh
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (850)
|+|..|+++..+.-+.+..|.- .+-.++.+.-..|+.+.|-..+.++-+. .+|.. ....+.....
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l--------~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~-----l~v~ltrarl 162 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVL--------AYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDT-----LAVELTRARL 162 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHH--------HHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCch-----HHHHHHHHHH
Confidence 7777777777666555444321 1111223334567777777776666632 22221 3334444555
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc------------chHHHHHHHHH
Q 003082 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD------------ILFCNFVREFG 232 (850)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~------------~~~~~li~~~~ 232 (850)
+..+|+++.|..-+.++.+.+ |..+.......++|.+.|++.....+...+.+.. .++..+++-..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 666777777777776666554 5454445555555555555555555543321110 23333333333
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hhcCChHHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~a~~l 311 (850)
..+..+.-...|+..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|+. ..++. ...++...-++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHHhhcCCCCchHHHHH
Confidence 333333333344433321 1223333344444455555555555555555554443331 11111 111222222222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
.++-.+. .+-++..+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+-++|.+.|+..+|.+++++.+
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK------LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 2222111 111223444444444444444444444444333 33444444444444444444444444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-06 Score=85.67 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=207.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 293 t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
+-..+++...|++..|.++..+-.+.+-. ....|..-..+--..|+.+.|-..+.+..+.. | .++...+-+....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltrarl 162 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHHHH
Confidence 33455666778888888888776666522 23445555666778899999999999887731 1 3456677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHH
Q 003082 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACVE 445 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------~~~~ll~~~~~ 445 (850)
....|+++.|..-+++..+.+.. +........++|.+.|++.+...++..|.+.|.--+.. +|+.+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999888755 67888899999999999999999999999988655543 45555554444
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
.+..+.-...++....+ .+.++..-.+++.-+
T Consensus 242 ~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~l 273 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAERL 273 (400)
T ss_pred cccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHHH
Confidence 43333333333322211 122333333444433
Q ss_pred --hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAIKVCVRSKRLKQA 602 (850)
Q Consensus 526 --~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~li~~~~~~g~~~~A 602 (850)
|++.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..++-.+ .+- +.-.+.+|...|.+++.|.+|
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHH
Confidence 467899999999999988887722 23356677787777777766654 343 447889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
.+.|+...+ ..|+..+|+.+-+++.+.|+..+++++.
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 999997775 5799999999999999999999876643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-06 Score=87.58 Aligned_cols=445 Identities=15% Similarity=0.113 Sum_probs=255.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC--cchH-HHHHHHHHh
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILF-CNFVREFGK 233 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~--~~~~-~~li~~~~~ 233 (850)
.++.-...+...|++++|++...+++..+ |++......-+-+..+.+.+++|+.+.+.-+.. ...| ..-+..+.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 33444456678899999999999999876 888888888888999999999999776664431 1122 233444458
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhhcCChHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEV 311 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~~~~~~~~~a~~l 311 (850)
.++.++|+..++- ..+ +..+...-...+-+.|+|++|+.+|+.+.+.+.. -|...-..++.+-+ +...
T Consensus 92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV 161 (652)
T ss_pred cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH
Confidence 8999999999882 223 3446666677788999999999999999877543 23333333333211 1111
Q ss_pred HHHHHHcCCCCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHhhhcCCccc-----CHh-----HHHHHHHHHHhcCC
Q 003082 312 YKNMQKLGVMADMASYNILL---KACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----DVF-----TYSTIVKVFADAKW 378 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll---~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-----d~~-----ty~~li~~~~~~g~ 378 (850)
..|......| ..+|..+. -.+...|++.+|+++++...+...+....- +.. .---|.-.+-..|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1233323333 33444444 345578999999999998844332111000 111 11223344667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTIT----WSSLINACANAGLVE-QAMHLFEEMLQAG-------C---EPNSQCC-NILLQA 442 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~t----y~~li~~~~~~g~~~-~A~~l~~~m~~~g-------~---~p~~~~~-~~ll~~ 442 (850)
.++|..++...+...+. |... -|.|+..-....-++ .++..++.....- + .-..... +.++..
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887643 4422 233332211111111 1222222211100 0 0001111 122222
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
| .+..+.+.++..... +-.|.. .+.+++
T Consensus 319 ~--tnk~~q~r~~~a~lp-------------------------------------------------~~~p~~-~~~~ll 346 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLP-------------------------------------------------GMSPES-LFPILL 346 (652)
T ss_pred H--hhhHHHHHHHHHhCC-------------------------------------------------ccCchH-HHHHHH
Confidence 2 222233333322211 112333 334444
Q ss_pred HHHhc----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHH
Q 003082 523 KACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAI 590 (850)
Q Consensus 523 ~~~~~----~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~pd~~ty~~li 590 (850)
..+-. ....+..++....+....-...+--+++......|+++.|.+++. .+.+.+..|-.+ ..+.
T Consensus 347 ~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv 424 (652)
T KOG2376|consen 347 QEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIV 424 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHH
Confidence 43321 244566666655554322234566677788889999999999999 666666666655 4566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 591 KVCVRSKRLKQAFSLFEEMKH--YQIQPNLVTYITLLR----ARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIE 664 (850)
Q Consensus 591 ~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~----a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~ 664 (850)
..|.+.++.+.|..++.+... ..-.+......+++. --.+.|.-++ +..+++++.+.. .+|..+...++-
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhC-CchHHHHHHHHH
Confidence 667777776667777666553 111222233333333 3346687555 788999998743 567888889999
Q ss_pred HHHhhhhhhh
Q 003082 665 EWCEGVIQDK 674 (850)
Q Consensus 665 ~~~~~~~~~~ 674 (850)
+||+-....+
T Consensus 501 a~~~~d~eka 510 (652)
T KOG2376|consen 501 AYARLDPEKA 510 (652)
T ss_pred HHHhcCHHHH
Confidence 9987544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=95.48 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=125.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..|...|++++|...|++..+.. +.+...+..+...|...|++++|.+.|++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 456677888888888888888888887653 2356677778888888888888888888766432
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
+.+...+..+...+...|++++|.+.|+...... ........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 1233344455555666666666666666655410 011223345555556666667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
|...+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77766666654322 3455666666666777777777777766655 23344555556666666777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=90.98 Aligned_cols=221 Identities=13% Similarity=0.082 Sum_probs=105.4
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCC-----cchHHHHHHH
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA-----DILFCNFVRE 230 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~-----~~~~~~li~~ 230 (850)
.++.-|...|-++.|..+|..+.+.+... ..+...++..|....+|++|+...+.+ +.+ ...|+.|...
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 33444444455555555554444432211 112333444444444555444443321 111 0334555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a 308 (850)
+....+++.|+.++....+... ..+.+--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|. |+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5555666666666665555321 1233333444555566666666666666665533333344444555543 455555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhhhcCCcccCHhHHHHHHHHHH---hcCCHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE-IYGEVKHLEAKGVLKLDVFTYSTIVKVFA---DAKWWQMALK 384 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~-i~~~m~~~~~~g~~~~d~~ty~~li~~~~---~~g~~~~A~~ 384 (850)
...+..+.+.. +....-+.+-.......-.+.|.. +.+++.+ +|+...+..+|..-. ..|...+-+.
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-------~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-------KPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-------CCcHHHHHHHHHhhhccccccchhhhHH
Confidence 55555554432 222222222222222233334443 3444444 577777777777654 2345667777
Q ss_pred HHHHHHHC
Q 003082 385 VKEDMLSA 392 (850)
Q Consensus 385 l~~~m~~~ 392 (850)
+++.|...
T Consensus 340 ~lr~mvge 347 (389)
T COG2956 340 LLRDMVGE 347 (389)
T ss_pred HHHHHHHH
Confidence 77777644
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-08 Score=90.08 Aligned_cols=201 Identities=14% Similarity=0.028 Sum_probs=140.2
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCC
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (850)
++....+...|+-.|...|++..|.+-++++++. +|+.+.... .++. .|.+.|..+.|-+.|++++ .+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~---~~A~---~Yq~~Ge~~~A~e~YrkAl--sl~p 100 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHL---VRAH---YYQKLGENDLADESYRKAL--SLAP 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHH---HHHH---HHHHcCChhhHHHHHHHHH--hcCC
Confidence 3445788889999999999999999999999999 777655533 2333 3458899999999999999 5678
Q ss_pred ccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcc
Q 003082 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADI 222 (850)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~ 222 (850)
+. -+++.+-..-++.+|++++|...|++.+.....+....++.+++-...+.|+.+.|..+|++ .|..+.
T Consensus 101 ~~------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 101 NN------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred Cc------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 75 44555555666788999999999999887654455555566666666666777766666654 255556
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+...+.....+.|++..|...++.....+. ++..+.-..|..-...|+-+.+.+.=.++.+
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666666666777777666666665544 5666655566655666666655555444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-05 Score=84.98 Aligned_cols=102 Identities=15% Similarity=0.300 Sum_probs=76.3
Q ss_pred CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 545 SPNHI--SWTILIDACGGSGNVEGALQILKIMREDGMSPDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (850)
Q Consensus 545 ~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 621 (850)
+|+.. ++-.++..|-+.|+++.|..+++....+ .|+.+ .|-.=...+...|++++|..++++..+.. .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 45554 4556788899999999999999999874 67654 45555678899999999999999998865 4676665
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 622 ITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 622 ~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.--.+-..+.+..++|.+... ...+.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~s---kFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLS---KFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHH---Hhhhccc
Confidence 555566667888888666444 4555565
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-06 Score=82.78 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
...++..|+.+++.....+-+- .+..+.++.-| +...|++++|+..++-+....- + +...+-+++-.+--.
T Consensus 34 s~rDytGAislLefk~~~~~EE-----E~~~~lWia~C--~fhLgdY~~Al~~Y~~~~~~~~-~-~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREE-----EDSLQLWIAHC--YFHLGDYEEALNVYTFLMNKDD-A-PAELGVNLACCKFYL 104 (557)
T ss_pred hcccchhHHHHHHHhhccchhh-----hHHHHHHHHHH--HHhhccHHHHHHHHHHHhccCC-C-CcccchhHHHHHHHH
Confidence 5578888998888776332111 12356677555 5578999999999998876442 2 234445555444456
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+.+|.......|+++.---.|...-.+.++-++-..+...+... ..---+|....-..-.+++|+++|.....
T Consensus 105 g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888887777655555566666677766666555554431 12222334433334467778888777765
Q ss_pred CCCCcCHHHHHHHHH
Q 003082 285 QNVTLNIYVFNSLMN 299 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~ 299 (850)
. .|+-...|.-+.
T Consensus 180 d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 180 D--NPEYIALNVYMA 192 (557)
T ss_pred c--ChhhhhhHHHHH
Confidence 5 344444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-06 Score=84.42 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=123.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChh-hHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
++.+....+|..|+.+++.....+.+-+ ....++ .-.+.+.|++++|+..|.-+....-.|.. ..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWi--------a~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~ 94 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI--------AHCYFHLGDYEEALNVYTFLMNKDDAPAE------LG 94 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHH--------HHHHHhhccHHHHHHHHHHHhccCCCCcc------cc
Confidence 3455667899999999998876542222 111111 12345789999999999988864433322 33
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
+.+ ++.+.-.|.+.+|..+.+.. |+++.....+...--+.++-++-..+.+.+.+...--.+|....-..-.
T Consensus 95 vnL--Acc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H 166 (557)
T KOG3785|consen 95 VNL--ACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH 166 (557)
T ss_pred hhH--HHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 333 33344578999998877654 4444444445555566777777777777666555555567776666678
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
+++|+++|.+.+... |+-...|.-+. +|.+..-++-+.+++.-..+. .||.
T Consensus 167 YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 999999999998753 55555554443 567777888888888877765 4554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-05 Score=82.57 Aligned_cols=469 Identities=8% Similarity=0.031 Sum_probs=283.2
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
.+.+..+.++..|+-+=+++...+..|++. +. .+..+.-.|+++.|..++..-.-. ..+....+..+.
T Consensus 23 ~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--------~~-~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~ 90 (611)
T KOG1173|consen 23 VRDALMQHRYKTALFWADKVAGLTNDPADI--------YW-LAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccCChHHH--------HH-HHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHH
Confidence 334456677778877777777555555431 11 122233457778777776543211 223445556667
Q ss_pred HHHcCCChHHHHHHhhhC----------CCC---------c----------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 200 LCVNKPDVNLAIRYACIV----------PRA---------D----------ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----------p~~---------~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+.+..+++.|+.+.... +.+ . .....-...|....+.++|...|.+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 777777777777766521 111 0 01111234556666777788777776653
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhh-cCChH-HHHHHHHHHHHcCCCCCHHH
Q 003082 251 LSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN-AHDLK-FTLEVYKNMQKLGVMADMAS 326 (850)
Q Consensus 251 g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~-~~~~~-~a~~l~~~m~~~g~~pd~~t 326 (850)
|...|.++...-... -..++.+.+|+.+.-. -..-+......+.... ++... .....-.+-.-.|..-|...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 444444433322111 1112333333321100 0112222222222221 11000 00000000111233445555
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
.-.-..-|...+++.+..++++.+.+. .++....+..=|..+...|+..+-..+=.+|.+.-+. ...+|-++.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 666667777788888888888887763 3456666667777888888887777777777765332 5778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhh
Q 003082 407 ACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (850)
-|.-.|+..+|.+.|.+...- .|. ...|-.+.+.|.-.|.-|.|+..+...-+.- .
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--------------------~- 377 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--------------------P- 377 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------------------c-
Confidence 888888889999888877543 222 2357777788888888888887776543210 0
Q ss_pred hcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCH
Q 003082 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNV 564 (850)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~ 564 (850)
-..-+..|..+=.+.-++.+.|.++|.+... +.| |+..++-+.-...+.+.+
T Consensus 378 -------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 378 -------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred -------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhh
Confidence 0112233444444445678888888887766 444 677888888888888899
Q ss_pred HHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003082 565 EGALQILKIMRED--GM---S-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (850)
Q Consensus 565 ~~A~~l~~~m~~~--g~---~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~ 638 (850)
.+|..+|...... .+ + --..+++.|..+|.+.++.++|+..|++.... .+-|..||.++--.+...|+++.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~-- 507 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDK-- 507 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHH--
Confidence 9999999887631 11 1 13456888889999999999999999998874 24578888888888888999887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 639 QCLAVYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 639 ~a~~l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
|.+.|++-. .+.||..+...++...
T Consensus 508 -Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 -AIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred -HHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 666777654 6788877666666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.00011 Score=76.37 Aligned_cols=418 Identities=10% Similarity=0.079 Sum_probs=297.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
.++.+..|..+|++++.. ... ...+++..+-.-+++..+..|..++++.+..= |.....|+.-+..=...
T Consensus 85 sq~e~~RARSv~ERALdv--d~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV--DYR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEML 154 (677)
T ss_pred hHHHHHHHHHHHHHHHhc--ccc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHh
Confidence 678888999999999943 222 25667766666678899999999999887643 55555677766666778
Q ss_pred CChHHHHHHhhh---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 205 PDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 205 ~~~~~A~~~~~~---~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
|+..-|.++|+. ..++..+|.+.|+.=.+-+.++.|..+|++..- +.|++..|-.-...=-++|....|..+|+.
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999976 356678999999999999999999999999886 458999998888888899999999999998
Q ss_pred HHhC-CCC-cCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHH--------H
Q 003082 282 LRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI--------Y 347 (850)
Q Consensus 282 m~~~-g~~-pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd--~~t~~~Ll~~~~~~g~~~~A~~i--------~ 347 (850)
..+. |-. -+...|+++-.. .++.++.|.-+|+-.+.. ++.+ ...|..+...=-+-|+.....+. |
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 7753 211 122333333332 234777888888877764 2333 44555555544555665443332 2
Q ss_pred HHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HHcCCHHHH
Q 003082 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-------ITWSSLINAC---ANAGLVEQA 417 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~---~~~g~~~~A 417 (850)
+.+.+ + -+.|-.+|--.++.-...|+.+...++|+..... ++|-. ..|-.+=-+| ....+++.+
T Consensus 312 E~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 312 EKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred HHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33322 1 2345666777777777889999999999998864 45422 1222222222 246788999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 418 MHLFEEMLQAGCEPNSQCCNILLQAC----VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 418 ~~l~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
.++|+..++. ++-...||.-+=-+| .++.++..|.+++....
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--------------------------------- 431 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--------------------------------- 431 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---------------------------------
Confidence 9999999883 444556776554444 35678888888886543
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 571 (850)
|..|-..+|-..|..-. ++.+++..++....+-+.. |..+|.-....=...|+.+.|..+|
T Consensus 432 ----------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 432 ----------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred ----------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34677777766665443 5789999999999985432 6778888877778899999999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 572 KIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 572 ~~m~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
+-.++.. +..-...|-+.|+-=...|.++.|..+|+++.+.
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9998632 2223456777777777899999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-06 Score=91.85 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=193.1
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.+++......+...+++.+..++.+.+.+.. ++.....+..++ .+.+.|+-. .+-+..+..|+.+.+|.+++--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 4455555556667788888888888777653 222333334444 444455433 3444556668888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhhcCChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~a 308 (850)
|.-.|++.+|++.|......+. .=...|-.....|+-.|..++|...|...-+. |.. -...|..+=....++...|
T Consensus 322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHH
Confidence 8888888888888877655321 12346777788888888888888877766542 322 1233334333445677888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc-c-cCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~-~-~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.+.|.+..... +-|+...+-+--.....+.+.+|..+|+......+.-.- . --..+++.|...|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88887776543 557778887777777888999999998877632211100 0 12346788888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
++.+....+ |..+|+++.-.|...|+++.|...|.+.+- +.|+..+...++..+.
T Consensus 479 q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 998877544 888999999999999999999999998875 5788877777776443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-05 Score=84.93 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=103.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
-++.....|.|++|.....+++..++++.. .+.|-+.+..+.++|++|+.+.+.-. +..... +.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~----~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDED--------AIRCKVVALIQLDKYEDALKLIKKNG--ALLVIN----SFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHh--------hHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcc----hhh-
Confidence 345567778888888888888887644332 22333344556677777764433222 111111 100
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-------------------
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------------- 217 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------- 217 (850)
+=.+++.| +.++.++|+..++. ..+.+......-++.+.+.|++++|+.+|+.+
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 11222222 45666666665551 11222223333445555666666666655442
Q ss_pred ---------------CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--------C-----CCCHH-HHHHHHHHHH
Q 003082 218 ---------------PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHL--------S-----SPNMY-ICRTIIDVCG 267 (850)
Q Consensus 218 ---------------p~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~-----~p~~~-~~~~li~~~~ 267 (850)
|. +...+++..-.+...|+|.+|+++++...+.+ . .-... +---|.-++-
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 11334556677788899999999998873221 0 01111 1223444566
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 003082 268 ICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g 286 (850)
..|+.++|.++|....+..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HhcchHHHHHHHHHHHHhc
Confidence 7899999999999988765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-06 Score=90.60 Aligned_cols=206 Identities=12% Similarity=-0.022 Sum_probs=130.5
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
||+- ...|..++..+...|+.++|..-+........ +++...... .....+...|++++|.+.++++.+.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH------VEALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 5665 67777888888888999998888888776632 111111111 1112345789999999999999853
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~ 220 (850)
.|+... ....-..........++...+.+.++.. ....|........++..+...|++++|+..++. .|.+
T Consensus 73 ~P~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDLL---ALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcHH---HHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 676421 1110001111111235555555555441 112233333344556677888999988887765 3666
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...+..+...|...|++++|+..++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677788888888999999999988887765321 232 24556778888889999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-05 Score=82.95 Aligned_cols=499 Identities=12% Similarity=0.072 Sum_probs=265.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhh
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (850)
..+-.-...|.+++|+.+|++..+. ++++..+ ..+|+|++|+++-+.-- .+.. -
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------------DLlNKly---Qs~g~w~eA~eiAE~~D--RiHL--------r 858 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------------DLLNKLY---QSQGMWSEAFEIAETKD--RIHL--------R 858 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHH---HhcccHHHHHHHHhhcc--ceeh--------h
Confidence 3444456678999999999988764 2333333 37899999998855443 2222 4
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC--------CC----------CcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP--------VK----------ELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
+++.+.+..+-..++.+.|++.|++.-...+. |. +...|.--+.-+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 45555566666778899999888753111100 11 1222222344455688999999988765
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C------CCc
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--N------VTL 289 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g------~~p 289 (850)
.-|++++...|-+|+.++|-++-++- -|...+-.|.+.|-..|++.+|...|.....- . -..
T Consensus 939 ----~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 939 ----KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ----hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45788889999999999998876652 46778888999999999999999999875421 0 011
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hhhcC-CcccCH
Q 003082 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-----LEAKG-VLKLDV 363 (850)
Q Consensus 290 d~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~-----~~~~g-~~~~d~ 363 (850)
+...+|.-+..-..+.-.|-+.|++.- .. +..-+-.|-++|.+.+|+++--.-.+ +..+. --..|.
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 223333333222234444555555442 11 11234457788888887764211111 00000 012345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNI 438 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----~~~~ 438 (850)
...+.-.+.|+...+++.|..++-..++ |.--+.. |+..++.-..++-+.|--. .-.|+.. ....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 5566666677777788888777765443 3333333 3333333333333333211 1233433 3555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC----CCCcCCC----cccccccccC
Q 003082 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT----PNFVPNS----HYSSFDKRFS 510 (850)
Q Consensus 439 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~ 510 (850)
+...|.+.|.+..|-+-|-+.-.+ +..|....++..+.. .+..... ...+++....
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK----------------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlD 1214 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK----------------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLD 1214 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH----------------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcc
Confidence 667788888888877666432211 011111111111111 1111111 1123344455
Q ss_pred CCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 511 ~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
...|..+.--++.-|.+ .++.--.+++...+ +..+ ..+|.- ..|-+++|-+.+.+...++. ...-|+
T Consensus 1215 Wq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq--iEiee~q~ydK------a~gAl~eA~kCl~ka~~k~~--~~t~l~ 1284 (1416)
T KOG3617|consen 1215 WQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ--IEIEELQTYDK------AMGALEEAAKCLLKAEQKNM--STTGLD 1284 (1416)
T ss_pred cccChHHHhhhHhhhhcchhHHHHHHHHHHHHH--hhHHHHhhhhH------HhHHHHHHHHHHHHHHhhcc--hHHHHH
Confidence 56666666666666653 12222222221111 0000 012211 12446666666666665431 222333
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 588 TAIKVCVRS-----------KRLKQAFSLFEEMKHYQIQP----NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 588 ~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p----~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.|-.-..+- .+..+.++-...|.+..+-| -...|..||..+.+..++.. |.+.+.+|.+.--
T Consensus 1285 ~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~---AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1285 ALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKP---AYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccH---HHHHHHHHhhcCC
Confidence 333222222 23444444445555543333 35678889999998888777 5556778877554
Q ss_pred CCCHH
Q 003082 653 KANDT 657 (850)
Q Consensus 653 ~p~~~ 657 (850)
..|..
T Consensus 1362 ~~~~s 1366 (1416)
T KOG3617|consen 1362 NVDLS 1366 (1416)
T ss_pred ccchh
Confidence 44433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00017 Score=73.57 Aligned_cols=287 Identities=12% Similarity=0.081 Sum_probs=179.6
Q ss_pred HhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
+-.++...|...|-.+... .++-|+.....+.+.+...|+.++|...|++.... .|+..+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~----------------- 267 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE----------------- 267 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh-----------------
Confidence 3345555555544433322 24457778888888888899999998888876643 222211
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
....|..|+ .+.|+.+....+...+-.. .......|-.-...+...++++.|+.+-++..
T Consensus 268 ------------~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 268 ------------AMDLYAVLL---GQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------------hHHHHHHHH---HhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 111222222 2344554444444443321 11222233333344556777888888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccC
Q 003082 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470 (850)
Q Consensus 391 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 470 (850)
+.+.. +...|-.=...+...|+.++|.-.|+..+... +-+..+|.-|+..|...|++.+|.-+-+.....
T Consensus 328 ~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-------- 397 (564)
T KOG1174|consen 328 DSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-------- 397 (564)
T ss_pred ccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------
Confidence 65322 44445444466777888888888888877642 346678888888888888888887655433211
Q ss_pred ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH-HHHhc---cHHHHHHHHHHHHHcCCCC
Q 003082 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACCT---DYYRVKALMNEMRTVGLSP 546 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li-~~~~~---~~~~a~~l~~~m~~~g~~p 546 (850)
+..+..+...+- ..|.- .-++|..+++.-.+ +.|
T Consensus 398 ----------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P 435 (564)
T KOG1174|consen 398 ----------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INP 435 (564)
T ss_pred ----------------------------------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCC
Confidence 011222222221 11221 24678888877665 456
Q ss_pred CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
+-. .-+.+...+...|..+++..++++... ..||....+.|.+.+...+.+.+|.+.|....+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 543 556677778889999999999998876 478999999999999999999999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-06 Score=91.32 Aligned_cols=117 Identities=10% Similarity=-0.083 Sum_probs=57.2
Q ss_pred cCchhHHHHHHHHHHHcC-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 126 EGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
.+..+.++.-+.+++... +.|+. ....+...+..+...|++++|+..|++.++.. |+.+..++.++..+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~-----~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEE-----RAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQA 111 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHh-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHC
Confidence 344555666666655321 12211 12234444445556666666666666665543 55554455555555555
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 205 ~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
|++++|+..|+.. |....++..++..+...|++++|++.|+...+
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554444332 33344444444444455555555555554444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-06 Score=81.69 Aligned_cols=196 Identities=11% Similarity=-0.002 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
....+.+.++..|.++|++..|..-+++.++.. |+...+|..++..|...|..+.|.+.|+++ |.+..+.|+-+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 446678888889999999999999999999876 888888999999999999999999998874 88889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hhcCCh
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~~~~~ 305 (850)
..+|.+|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++..+.... ...+.-.+.. ...|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 99999999999999999998763222 3457888888888999999999999998876322 1223333333 245678
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
-.|...++.....+. ++..+.-..|..--+.|+.+.|.+.=.++.+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888877664 7877777778888888888888777666655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-05 Score=88.34 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
+..+...|...|++++|++++++.++. .|+ +..|..-...|-+.|++++|.+.++...
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455666667777777777766664 344 3445555666666666666666665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-06 Score=91.21 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=201.6
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~ 232 (850)
+++.....+.+.|++++|++.++.-...- +|........+..+.+.|+.++|...+..+ |.+...|..|..+.+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34444556778999999999998755432 566666677889999999999999887654 666666666777664
Q ss_pred hcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCcCHHHHHHHHHhhcC--C
Q 003082 233 KKR-----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--D 304 (850)
Q Consensus 233 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~ 304 (850)
-.. ..+...++|+++...- |.......+.-.+.....+. .+...+..+...|+++ +|+.|-..+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 333 5677788899887643 43333333322233222333 4445566677788643 34444444432 2
Q ss_pred hHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHH
Q 003082 305 LKFTLEVYKNMQK----LG----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYS 367 (850)
Q Consensus 305 ~~~a~~l~~~m~~----~g----------~~pd~~--t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~ 367 (850)
..-..+++..+.. .+ -+|... ++.-|...|...|++++|++..+.... ..|+ +..|.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~ 232 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYM 232 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHH
Confidence 3333444444432 11 123332 445667778899999999999998876 4566 55788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHH
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ------CC--NIL 439 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------~~--~~l 439 (850)
.-.+.|-+.|++++|...++..+..+.. |...=+-.+..+.++|++++|.+++......+..|-.. .| .-.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 8889999999999999999999988766 88888888999999999999999999887766433221 11 345
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Q 003082 440 LQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+|.+.|++..|++.|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 67889999999999988776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=84.11 Aligned_cols=221 Identities=11% Similarity=-0.024 Sum_probs=99.3
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
.+...|.+.|.+.+|...|+..++. .|. .++++.+...|.+..+.+.|+.++.+-++.. |.++.....+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~-------~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ 296 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPH-------PDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCc-------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--Cchhhhhhhh
Confidence 3444555666666666666666633 221 1222333344445566666666666554432 4444444444
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 273 (850)
++.+...++.++|+++++.. |.+..+...+...|.-.++.+-|+..|.++++.|. -+...|+.+.-+|.-.++++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 44455555555555554432 22223333344444445555555555555555544 33444444444444445555
Q ss_pred HHHHHHHHHHhCCCCcCH--HH-HHH-HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 274 KSRAIYEDLRSQNVTLNI--YV-FNS-LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd~--~t-~~~-ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
-++.-|+.....--.|+. .+ ||. .+.+-.||+..|.+.|+-.+..+ .-+...+|.|.-.-.+.|+++.|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 555555444432222221 11 111 11112344444444444444332 12334444444444444555554444444
Q ss_pred HH
Q 003082 350 VK 351 (850)
Q Consensus 350 m~ 351 (850)
..
T Consensus 455 A~ 456 (478)
T KOG1129|consen 455 AK 456 (478)
T ss_pred hh
Confidence 33
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-06 Score=88.09 Aligned_cols=117 Identities=11% Similarity=-0.030 Sum_probs=72.0
Q ss_pred cCcHHHHHHHHHHHHhCCC-CCCC-cccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRL-PVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
.++.+.++.-+.+++.... .++. ...++..+..+...|+.++|+..|... |++..+|+.++..|...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888877775431 1211 334556666666677777666655442 555566666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..|+..++..+ -+..+|..+..++...|++++|.+.|+...+.
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77776665321 23455666666666667777777766666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00033 Score=77.34 Aligned_cols=491 Identities=10% Similarity=0.030 Sum_probs=268.3
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC-cccHH---HHHHH
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEF---RIVQL 200 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~---~l~~~ 200 (850)
..++.++++..|......+..-+..+.+.+ ......+...++.+++ .++..+.+ .+-|.+ ..... -+..-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l----~~~~~~f~~~~~~Ee~-~Lllli~e-s~i~Re~~~d~ilslm~~~~ 312 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARL----YKGFALFLPKSGQEEV-ILLLLIEE-SLIPRENIEDAILSLMLLLR 312 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHH----hhcccccCCCCcHHHH-HHHHHHHh-hccccccHHHHHHHHHHHHH
Confidence 567778888888888776655544433332 2222234455666665 33333222 222221 11000 00000
Q ss_pred HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 201 CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
..+. ..+..+..+|..|.-+..+.|++..+.+.|++.... ..-....|+.+...|.-.|.-..|..+++
T Consensus 313 k~r~----------~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 313 KLRL----------KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHH----------hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 1111 123345577888888999999999999999988763 22456678899989999999999999998
Q ss_pred HHHhCCCCcCHHHHHHHHH-hhcC---ChHHHHHHHHHHHH--cC--CCCCHHHHHHHHHHHHHc-----------CChH
Q 003082 281 DLRSQNVTLNIYVFNSLMN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTV 341 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~-~~~~---~~~~a~~l~~~m~~--~g--~~pd~~t~~~Ll~~~~~~-----------g~~~ 341 (850)
.-....-.|+..+-..+.. .|.+ ..+++++.-.+... .| -......|-.+--+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665543354443333333 3443 33444433333333 11 122334444444444321 1234
Q ss_pred HHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 342 ~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
++.+.+++..+. +.-.|++..|-++= |+..++++.|++..++..+.+-.-+...|..|.-.+...+++.+|+.+.
T Consensus 462 kslqale~av~~---d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 462 KSLQALEEAVQF---DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHhc---CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 556666666653 22345555554443 7788999999999999998866778999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccc-ccccCc-cCCchhhhhhhhhhhcccccCCC-C---
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-VALGED-YDGNTDRISNMEHKDKQSITNTP-N--- 495 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--- 495 (850)
+...+.- .-|......=++.-...++.++++.....+...-.. ..+... ..+.......-.+......+..+ +
T Consensus 537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8877541 111111111122222356666665555444322110 000000 00000000000000000000000 0
Q ss_pred -------CcCCCcccccccccCCCcCHH-HH------H-HHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 496 -------FVPNSHYSSFDKRFSFKPTTT-TY------N-ILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (850)
Q Consensus 496 -------~~~~~~~~~~~~~~~~~p~~~-t~------~-~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 558 (850)
..........+.+....|+.. ++ + .....+. ++.++|...+.+..+. ..-....|......+
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHH
Confidence 000000000122222222221 11 1 1111121 2445666555555442 122455676666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
-..|.+++|.+.|...... .|+ +....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+-..+-+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 7888889998888888764 444 4577888888888888777777 888888755 347888888888888899988
Q ss_pred HHHHHHH
Q 003082 636 EVQQCLA 642 (850)
Q Consensus 636 ~a~~a~~ 642 (850)
.|.+++.
T Consensus 772 ~Aaecf~ 778 (799)
T KOG4162|consen 772 QAAECFQ 778 (799)
T ss_pred HHHHHHH
Confidence 7655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-05 Score=75.77 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..-...+.+.+...|++.+|+..|..+++. +|..|...... ...|+..|+-.-|+.=|.+++ .+.||-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrR------aT~yLAmGksk~al~Dl~rVl--elKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRR------ATVYLAMGKSKAALQDLSRVL--ELKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHH------HHHHhhhcCCccchhhHHHHH--hcCccH--
Confidence 455567889999999999999999999987 88877654432 224667899999999999999 568874
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---cccHH------------HHHHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDEEF------------RIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~------------~l~~~~~~~~~~~~A~~~~~ 215 (850)
+.+-+.....+.++|++++|..=|+..++.. |.. ..... ..+..+...|+...|+.+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 6677777888899999999999999998765 321 11111 12334445677777776654
Q ss_pred hC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 216 ~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+ |-+...+..-...|...|++..|+.=.....+.. ..|+.++--+-..+-..|+.+.++...++.++. .||.
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 42 5555556666778888888888877666655432 245666666667777788888888887777754 4553
Q ss_pred HH----HHHHHH-------h----hcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 292 YV----FNSLMN-------V----NAHDLKFTLEVYKNMQKLGVMADMASYN---ILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 292 ~t----~~~ll~-------~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~---~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
.. |..|=. + ..+++.++++-.+...+.........|| .+-.++...|++.+|.+...++.+
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 21 211111 1 1135555666666655543222222332 344455566677777777777665
Q ss_pred hhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 354 EAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 354 ~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
+.|| +.++.--..+|.-..++++|+.-|+...+.+
T Consensus 336 -----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 336 -----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred -----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3344 5566666666776777777777777766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5e-07 Score=88.66 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=177.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (850)
..++..|.+.|.+.+|..-++..++.-.-|+.|..+. ..|.+-.++..|+.+|.+.+ ...|-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLs---------kvY~ridQP~~AL~~~~~gl--d~fP~~------ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLS---------KVYQRIDQPERALLVIGEGL--DSFPFD------ 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHH---------HHHHHhccHHHHHHHHhhhh--hcCCch------
Confidence 5778889999999999999999999866666554322 34557788999999999888 446755
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...++.+-..++.++|+++|+..++.. |.+..+...++..|--.++++.|+++++.+ -.++..|+++.-.
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 4456666777777899999999999998766 778888888888888899999999999874 4566889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH--HHhhcCChH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLK 306 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l--l~~~~~~~~ 306 (850)
|.-.++++-++.-|.+....--.|+ ..+|-.|.......|++..|.+.|+-....+-. +...+|.| +.+..|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchH
Confidence 9999999999999999887644443 346888888888899999999999988865322 23445443 455778999
Q ss_pred HHHHHHHHHHHc
Q 003082 307 FTLEVYKNMQKL 318 (850)
Q Consensus 307 ~a~~l~~~m~~~ 318 (850)
.|..++......
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999887654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=66.11 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (850)
Q Consensus 578 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 609 (850)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.7e-05 Score=91.99 Aligned_cols=233 Identities=10% Similarity=-0.028 Sum_probs=117.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CcCH--HHHHH-
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFNS- 296 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd~--~t~~~- 296 (850)
+...+...|++++|...+++........+ ....+.+...+...|++++|...+++.....- .+.. .++..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34455567777777777776655211112 12345555666677777777777776653210 0111 11111
Q ss_pred -HHHhhcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHH
Q 003082 297 -LMNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (850)
Q Consensus 297 -ll~~~~~~~~~a~~l~~~m~~----~g~~--p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~ 368 (850)
.+....|+++.|.+.+++... .|.. + ....+..+...+...|++++|...+.+................+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 112234677777766665543 2211 1 2334555666677789999999988877654322111111233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPNS---QCCNIL 439 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~l 439 (850)
+...+...|++++|...++......... ....+ ...+..+...|+.+.|..++............ ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 5556677788888888777764321000 00101 01123334456666666665554321111010 012334
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q 003082 440 LQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m 459 (850)
..++...|++++|..+++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.5e-05 Score=73.24 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=203.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 74 ~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
+.+.+-.+++..+|.+|++++....+. .|..-..+ ..+.-.|-...++..|-..|+++. -..|....
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgL------SlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~q--- 79 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGL------SLLGYCYYRLQEFALAAECYEQLG--QLHPELEQ--- 79 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHH------HHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHH---
Confidence 556777889999999999999998887 34222121 112223447789999999999998 44664321
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH--H--HHHcCCChHHHHHHhhhCCC--CcchHHHH
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV--Q--LCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~--~~~~~~~~~~A~~~~~~~p~--~~~~~~~l 227 (850)
+..+ -+..+.+.+.+.+|+.+...|... ....+..+ . ..-+.+++.-+..+.++.|. +..+.++.
T Consensus 80 -YrlY--~AQSLY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 80 -YRLY--QAQSLYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred -HHHH--HHHHHHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 3222 244556789999999999887542 11122211 1 12346677777777888884 44667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCH--HHHHHHHHhhcC
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNI--YVFNSLMNVNAH 303 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~--~t~~~ll~~~~~ 303 (850)
.-...+.|+++.|++-|+...+-+---....||.-+--| +.|+++.|++...++.++|+. |.. ..-.-.+.+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-- 227 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-- 227 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh--
Confidence 788889999999999999998875445567888777544 678999999999999988864 211 0000000000
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
.+...+.+...- =+..+|.=...+.+.|+++.|.+-+-.|.-..+ -..|.+|...+.-.= ..+++.+..
T Consensus 228 svgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE---~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE---EELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc---ccCCchhhhHHHHhc-ccCCccccH
Confidence 000000000000 012333334445567777777777776654221 234555554433211 233444445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPNSQCCNILLQACVE-ACQFDRAFRLFRS 458 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~-~g~~~~A~~l~~~ 458 (850)
+-+..++..+. -...||..++-.||+..-++-|-.++.+--..-. -.+...|+ +++++.- .-..++|++-+..
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 55555555443 2456777777778887777777777655332211 12334444 3333332 3345555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=65.01 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003082 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (850)
Q Consensus 542 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 575 (850)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00032 Score=77.54 Aligned_cols=369 Identities=12% Similarity=0.030 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC--Ccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA--PLE 148 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--p~~ 148 (850)
...|..|.-++...|+++.+.+.|++.+..- |.. ...+......+...|.-..|+.+++... ... |++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-----~~~---~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~ 392 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFS-----FGE---HERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSD 392 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----hhh---HHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCc
Confidence 7788889999999999999999999887552 111 2223333344557788888999998887 555 543
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCCC--CcccHHHHHHHHHcC----CC-------hHHHHHHh
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVNK----PD-------VNLAIRYA 214 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~----~~-------~~~A~~~~ 214 (850)
.+.+-+....| +.+.|.+++++++..+++... .... .+..+..++-+|... .. ..++++.+
T Consensus 393 ---~s~~Lmasklc--~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 393 ---ISVLLMASKLC--IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred ---chHHHHHHHHH--HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 22233333344 346788899998888776621 1111 122344444444321 11 22344444
Q ss_pred hh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-
Q 003082 215 CI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVT- 288 (850)
Q Consensus 215 ~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~- 288 (850)
+. -|.++.+.+.+.--|+.+++.+.|.+...+..+.+...+...|..|.-.+.-.+++.+|+.+.+..... |..
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33 377778888888899999999999999999999876778999999999999999999999998876542 210
Q ss_pred -----------------cCHHHHHHHHHhhc-------------------C------ChHHHHHHHH--------HHHHc
Q 003082 289 -----------------LNIYVFNSLMNVNA-------------------H------DLKFTLEVYK--------NMQKL 318 (850)
Q Consensus 289 -----------------pd~~t~~~ll~~~~-------------------~------~~~~a~~l~~--------~m~~~ 318 (850)
--..|...++.... | +..++.+... +....
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 00122222222111 0 1111111111 11111
Q ss_pred C---------CC--CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 319 G---------VM--AD------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 319 g---------~~--pd------~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
| .. |+ ...|......+.+.+..++|...+.+..++ .......|...-..+...|.+++
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHH
Confidence 1 01 11 123344556677778888888777776653 34455667666677788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
|...|......+.. ++...+++...+.+.|+..-|.. ++.++.+.+ +.+...|-.+-..+-+.|+.+.|.+.|...
T Consensus 703 A~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999988875433 46678889999999998777777 999999876 557788999999999999999999999865
Q ss_pred hh
Q 003082 460 TL 461 (850)
Q Consensus 460 ~~ 461 (850)
..
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 54
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00035 Score=79.09 Aligned_cols=208 Identities=14% Similarity=0.088 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
..|...+.+..+.. .-+..+|+.|--. ...|++.-|...|-+-.... +-+..+|..+--.|.+..+++-|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666666655442 2256666665444 55567777777766555442 345556766666777777888888777765
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh----ccHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----TDYYRVKAL 535 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~----~~~~~a~~l 535 (850)
.... +.|...|- -.+++ ++.-+...+
T Consensus 877 qSLd------------------------------------------------P~nl~~Wl--G~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 877 QSLD------------------------------------------------PLNLVQWL--GEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hhcC------------------------------------------------chhhHHHH--HHHHhHHHHHHHHHHHHH
Confidence 4321 11222221 11121 223334444
Q ss_pred HHHH--H--HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH----------HHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 536 MNEM--R--TVGLSPNHISWTILIDACGGSGNVEGALQIL----------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 536 ~~~m--~--~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~----------~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
|..- . ..|--|+..-|-....-...+|+.++-.... +.... |.+-+...|.+.....-+.+...+
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~ 985 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRA 985 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHH
Confidence 4331 1 1222334333333333334455544433322 22222 344456777777777777788888
Q ss_pred HHHHHHHHHH-CCCCCCHHHHHHHHHH----HHhcCChHHHHHHH
Q 003082 602 AFSLFEEMKH-YQIQPNLVTYITLLRA----RSRYGSLHEVQQCL 641 (850)
Q Consensus 602 A~~l~~~m~~-~g~~p~~~t~~~li~a----~~~~g~~~~a~~a~ 641 (850)
|.++..+... ...+-+..+|+.+..- ++..|.++.|.++.
T Consensus 986 a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 986 ALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 8777776543 1224566667754433 34456666655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=89.60 Aligned_cols=247 Identities=10% Similarity=0.076 Sum_probs=148.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
.+-.+.+.|.+.+|.-+|+..+.. +|.++..+..++.. ....++-..|+.++++.. .+.|+. .+
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~------qaENE~E~~ai~AL~rcl--~LdP~N------le 354 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGIT------QAENENEQNAISALRRCL--ELDPTN------LE 354 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhH------hhhccchHHHHHHHHHHH--hcCCcc------HH
Confidence 455678889999999999999999 88887775543332 236677788999999999 668887 78
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH---------HHHHcCCChHHHHHHh----hhCC--CCc
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV---------QLCVNKPDVNLAIRYA----CIVP--RAD 221 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~A~~~~----~~~p--~~~ 221 (850)
++..++..|.+.|.-.+|+.+++..+....+ -. +.... +.+..........++| ...| .++
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~--y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPK--YV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc--ch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 8888999999999999999999988765421 10 00000 0000000011111111 1123 344
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
.+.+.|.-.|--.|+|++|+..|+..+. ..| |...||.|...++...+..+|++.|++.++.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------------- 493 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------------- 493 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---------------
Confidence 5555566666666666666666665555 233 3445666666666555666666666555433
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-----cccCHhHHHHHHHHHH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-----LKLDVFTYSTIVKVFA 374 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-----~~~d~~ty~~li~~~~ 374 (850)
.|+ +.+...|.-.|...|.+++|.+.|-....+..++. ..++...|.+|=.++.
T Consensus 494 --------------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 494 --------------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred --------------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 343 22333455567788888888888777766554321 1122335555544444
Q ss_pred hcCCHH
Q 003082 375 DAKWWQ 380 (850)
Q Consensus 375 ~~g~~~ 380 (850)
-.++.|
T Consensus 554 ~~~~~D 559 (579)
T KOG1125|consen 554 AMNRSD 559 (579)
T ss_pred HcCCch
Confidence 444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-05 Score=78.61 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=174.6
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
++......+...|+.++|+..|++.. -+.|...+. ++.|. ..+...|++++...+...+.... ......|
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~--~~dpy~i~~---MD~Ya---~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~w 303 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTL--CANPDNVEA---MDLYA---VLLGQEGGCEQDSALMDYLFAKV--KYTASHW 303 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHh--hCChhhhhh---HHHHH---HHHHhccCHhhHHHHHHHHHhhh--hcchhhh
Confidence 33344445567899999999999988 567765443 33333 33455788888877777765432 1223345
Q ss_pred HHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
..-+.......++..|+.+.++. |.+...+..-+..+...++.++|.-.|....... +-+..+|.-|+..|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 55555566777888888877653 4444666666788889999999999999887642 247889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHH-HHhhcC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 003082 271 DYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAH---DLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQE 345 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~---~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~ 345 (850)
++.+|..+-+...+. +..+..+...+ -.++.- --++|..+++.-.+. .|+ .-..+.+...+...|..+++..
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999998887765542 12233333222 122222 345677777766554 344 3455666667777788888888
Q ss_pred HHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
+++.... ..||....+.|.+.+...+.+.+|+..|...++.+
T Consensus 460 LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8877765 46788888888888888888888888887777653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.003 Score=68.44 Aligned_cols=489 Identities=12% Similarity=0.125 Sum_probs=270.9
Q ss_pred cchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHH
Q 003082 57 TALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (850)
Q Consensus 57 ~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 136 (850)
++.-..+..+|-| ...|...+..-.. .-.+.-..+|+++++. -|..+...- .+. +. +.
T Consensus 14 vpfEeEilRnp~s-vk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~---~YL-------~~-R~------- 71 (835)
T KOG2047|consen 14 VPFEEEILRNPFS-VKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWY---DYL-------KA-RR------- 71 (835)
T ss_pred cchHHHHHcCchh-HHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHH---HHH-------HH-HH-------
Confidence 4555677788887 8888887776555 4455667788888877 444433211 111 00 00
Q ss_pred HHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh
Q 003082 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (850)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (850)
.++. +..|.... +..+- .-++.++-.+.+| +..|..-+..+..+|+.....+.|+.
T Consensus 72 ~~vk--~~~~T~~~----~~~vn---------~c~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfdr 127 (835)
T KOG2047|consen 72 AQVK--HLCPTDPA----YESVN---------NCFERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFDR 127 (835)
T ss_pred HHhh--ccCCCChH----HHHHH---------HHHHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 0111 33332211 22111 1112222222222 12344444445555555555555433
Q ss_pred ----CCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 003082 217 ----VPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----- 285 (850)
Q Consensus 217 ----~p~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 285 (850)
+|- ...+|...+......+-++-++.+|.+.++. ++..-+--|..+++.+++++|-+.+......
T Consensus 128 ALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 128 ALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred HHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence 222 2256777777777778888999999998873 3344677788888999999999998887643
Q ss_pred -CCCcCHHHHHHHHHhhcCChHHH-----HHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 286 -NVTLNIYVFNSLMNVNAHDLKFT-----LEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 286 -g~~pd~~t~~~ll~~~~~~~~~a-----~~l~~~m~~~g~~pd--~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
.-+.+...|.-+....+++.+.. ..+++.+... -+| ...|++|.+-|.+.|.++.|.++|++..+.
T Consensus 204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---- 277 (835)
T KOG2047|consen 204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---- 277 (835)
T ss_pred hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----
Confidence 12445566777766655443332 3444444432 344 457999999999999999999999987652
Q ss_pred CcccCHhHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----------CCCHHHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAK----------------------WWQMALKVKEDMLSAGV-----------TPNTITWSSL 404 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g----------------------~~~~A~~l~~~m~~~g~-----------~p~~~ty~~l 404 (850)
...+.-|+.+.+.|+.-. +++-.+.-|+.+...+. .-++.+|..-
T Consensus 278 --v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR 355 (835)
T KOG2047|consen 278 --VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR 355 (835)
T ss_pred --heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh
Confidence 244445555555554321 12233344444433321 1123334333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhh
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPN------SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~ 478 (850)
+. +..|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++...-..
T Consensus 356 V~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-------------- 418 (835)
T KOG2047|consen 356 VK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-------------- 418 (835)
T ss_pred hh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--------------
Confidence 32 2346667777778877764 2222 23578888999999999999999987654321
Q ss_pred hhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh------ccHHHHHHHHHHHHHcC---------
Q 003082 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVKALMNEMRTVG--------- 543 (850)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~------~~~~~a~~l~~~m~~~g--------- 543 (850)
+.+.-...+-..|+ ++.+.|..+++.....-
T Consensus 419 ----------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 419 ----------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 11111111111121 13455555555443210
Q ss_pred --CCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003082 544 --LSP------NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (850)
Q Consensus 544 --~~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 615 (850)
.++ +..+|+..++.--..|-++....+++++.+..+. ++...-....-+-.+.-++++++.|++=...=-.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 011 2334555666666677888888888888875543 2222222222334566677777777765543223
Q ss_pred CC-HHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 003082 616 PN-LVTYITLLRAR-SRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (850)
Q Consensus 616 p~-~~t~~~li~a~-~~~g~~~~a~~a~~l~~~M~~~g~~p~~~ 657 (850)
|+ -..|++.+.-+ .+.|... .+.+..+|++..+ ||+|...
T Consensus 544 p~v~diW~tYLtkfi~rygg~k-lEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTK-LERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH
Confidence 44 23455544333 2344332 3446778888877 7776643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0028 Score=70.40 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=137.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC--CCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p--~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
.|..++|..+|.+... +..+-+.|...|.+++|+++.+.-. +-..+|+.-...+...++.+.|++.|+
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 3555555555554432 1223344445555555555443311 111344444555555555555554443
Q ss_pred H----------HHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hhcCC
Q 003082 246 A----------SKKHL---------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304 (850)
Q Consensus 246 ~----------m~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~~~~ 304 (850)
. |+... -..|...|..-...+-..|..+.|+.+|..... |-++++ ++.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 2 11111 113445666666767788999999999997653 344444 45689
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC-------
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK------- 377 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g------- 377 (850)
.++|-++-++- | |....-.|.+.|...|++.+|..+|-.... +...|+.|-.++
T Consensus 954 ~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 954 TDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA-------------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred chHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHhcCHHHHHHH
Confidence 99888776543 2 666777899999999999999999876543 333444332222
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCC--CCCHHHHHHH
Q 003082 378 --------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------EMLQAGC--EPNSQCCNIL 439 (850)
Q Consensus 378 --------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~--~p~~~~~~~l 439 (850)
+.-.|-+.|++. |.. +.--+-.|-+.|.+..|+++-- +++..++ ..|+...+--
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 222233333332 111 1122334566777666665432 1222222 3455666767
Q ss_pred HHHHHHhCCHHHHHHHHHHHh
Q 003082 440 LQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~ 460 (850)
.+-++...++++|.+++-...
T Consensus 1087 adFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 777777788888887775443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00044 Score=75.05 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=122.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHH-
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS- 296 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~- 296 (850)
...+..+...+...|+.+.+...+....+... ..+.. ........+...|++++|.+.+++..+. .|+ ...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 34555566666666777776666665554322 12221 1222233456678888888888877765 233 223221
Q ss_pred HHHh----hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 297 LMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 297 ll~~----~~~~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+... ..+....+.+.+.. ..+..|+ ......+...+...|++++|...+++..+. -+.+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~ 156 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAH 156 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHH
Confidence 1111 12344444444443 1122233 345556667788899999999999988873 2334567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 372 VFADAKWWQMALKVKEDMLSAGV-TPNT--ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.|...|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88899999999999988876432 2232 34557788888999999999999988543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00059 Score=84.22 Aligned_cols=372 Identities=11% Similarity=0.053 Sum_probs=219.4
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
+..+...|++.+|+......++..... ......+...|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 444566677777777666665543222 22344555678888877777665221111122223344555667899999
Q ss_pred HHHHHHHHHhC--CC----CcCHH----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCh
Q 003082 275 SRAIYEDLRSQ--NV----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGNT 340 (850)
Q Consensus 275 A~~~~~~m~~~--g~----~pd~~----t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~----~t~~~Ll~~~~~~g~~ 340 (850)
|...++..... .. .+... .....+....|+++.|...+++....-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 99999877542 10 11111 11122223567999999999887653111121 3455666777889999
Q ss_pred HHHHHHHHHHHHhhhcCC-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcC
Q 003082 341 VLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANAG 412 (850)
Q Consensus 341 ~~A~~i~~~m~~~~~~g~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~ty~~li~~~~~~g 412 (850)
++|...+.+........+ ......++..+...+...|++++|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988876432211 1112234556666788899999999998886542 221 1 2334555666777889
Q ss_pred CHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcc
Q 003082 413 LVEQAMHLFEEMLQAG--CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (850)
Q Consensus 413 ~~~~A~~l~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (850)
++++|...+.+..... ..+. ...+..+...+...|++++|.+.+.........
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~----------------------- 644 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN----------------------- 644 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----------------------
Confidence 9999999998876531 1122 234455666778899999999998876532100
Q ss_pred cccCCCCCcCCCcccccccccCCCcCH-HHH---HHHHHHHhccHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 003082 489 SITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPN---HISWTILIDACGGS 561 (850)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~---~~li~~~~~~~~~a~~l~~~m~~~g~~p~---~~ty~~li~~~~~~ 561 (850)
.+..... ... ........++.+.|...+........... ...+..+...+...
T Consensus 645 --------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 645 --------------------GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred --------------------ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000000 000 01111112456677777655433211111 11234566677888
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 562 GNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 562 g~~~~A~~l~~~m~~~----g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
|+.++|..++++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899988888887652 33222 235566667788889999998888888764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-05 Score=79.28 Aligned_cols=190 Identities=7% Similarity=-0.058 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|++++.. .|..... ..........+...|++++|+..|+++. ...|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYA---EQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCc
Confidence 777888999999999999999999999987 4432211 1112223345668999999999999999 44675432
Q ss_pred chhhhHHHHHHHHhhhh--------cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcc
Q 003082 151 DGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~ 222 (850)
.. ..+...+..+.+ .|++++|++.++.+.... |++...+..+..... ..... ..
T Consensus 106 ~~---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~ 167 (235)
T TIGR03302 106 AD---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AG 167 (235)
T ss_pred hH---HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HH
Confidence 21 123333333333 378999999999998765 655433322221111 00000 01
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
....+...|.+.|++.+|+..|+...+.... | ....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1235778899999999999999999876321 2 3568889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0081 Score=68.34 Aligned_cols=500 Identities=13% Similarity=0.143 Sum_probs=252.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 74 ~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
+..++..+-++|-+..|++.|..+...-.. -.-++++.... ...|.-.-.++++++.++.|+..+++.+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~-vVhth~L~pEw----Lv~yFg~lsve~s~eclkaml~~NirqN------ 677 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRV-VVHTHLLNPEW----LVNYFGSLSVEDSLECLKAMLSANIRQN------ 677 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHH-HHHhccCCHHH----HHHHHHhcCHHHHHHHHHHHHHHHHHhh------
Confidence 456677788889999999888776544200 00111222111 2234455678889999999987776665
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~ 233 (850)
..+....|..|.++=-...-+++|+...... ..++.++.... +..++.+...-|.+-|+
T Consensus 678 -lQi~VQvatky~eqlg~~~li~lFE~fks~e------GL~yfLgSivn--------------~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 678 -LQIVVQVATKYHEQLGAQALIELFESFKSYE------GLYYFLGSIVN--------------FSEDPEVHFKYIQAACK 736 (1666)
T ss_pred -hHHHHHHHHHHHHHhCHHHHHHHHHhhccch------hHHHHHHHHhc--------------cccCchHHHHHHHHHHh
Confidence 5667777777777766677777777653221 11222222211 12233444455666666
Q ss_pred cCChHHHHHHHHHH------------HhC---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHH------------
Q 003082 234 KRDLVSALRAYDAS------------KKH---LSSP-----NMYICRTIIDVCGICGDYMKSRAIYED------------ 281 (850)
Q Consensus 234 ~g~~~~A~~~~~~m------------~~~---g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~------------ 281 (850)
.|++.+..++..+- .+. +..| |.+-+-.=+-.|.-..+..+-+++|-+
T Consensus 737 t~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG 816 (1666)
T KOG0985|consen 737 TGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVG 816 (1666)
T ss_pred hccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhh
Confidence 66666666554321 010 0001 111111111112222233333333322
Q ss_pred -HHhCCCCcCHHHHHHHHHhhcC--------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003082 282 -LRSQNVTLNIYVFNSLMNVNAH--------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (850)
Q Consensus 282 -m~~~g~~pd~~t~~~ll~~~~~--------------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i 346 (850)
+....+ +..+.-+.++.+... ++..-...++.....|+. |..+||+|.+.|...++-.+- .
T Consensus 817 ~LLD~dC-~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 817 ALLDVDC-SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhhcCCC-cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--h
Confidence 221111 112222333332221 233344556666677754 888888888888876654331 1
Q ss_pred HHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCHHHH-----
Q 003082 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----AGVTPNTITWSSLINACANAGLVEQA----- 417 (850)
Q Consensus 347 ~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~ty~~li~~~~~~g~~~~A----- 417 (850)
+ +-|..-=+..+.-||...+..-|.-.+++-.. -++--.-..|....+-+.+..+.+--
T Consensus 893 L------------keN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~ 960 (1666)
T KOG0985|consen 893 L------------KENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN 960 (1666)
T ss_pred c------------ccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh
Confidence 1 11111112233345544443322222111000 00000112233333333333333222
Q ss_pred ------HHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhccc
Q 003082 418 ------MHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (850)
Q Consensus 418 ------~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (850)
..+.++..+.++ ..|+.-.+.-+.++...+-..+-.++++.+.-.+...+.....
T Consensus 961 e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL----------------- 1023 (1666)
T KOG0985|consen 961 EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL----------------- 1023 (1666)
T ss_pred ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh-----------------
Confidence 234445554443 2355566777888888888899999988876443221111000
Q ss_pred ccCCCCCcCCCcccccccccCCCcCH---HHHHHHHHHH--------h---ccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 490 ITNTPNFVPNSHYSSFDKRFSFKPTT---TTYNILMKAC--------C---TDYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~t~~~li~~~--------~---~~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
.+..++.. ++.|. ..|-.-++-| | .-+++|..+|+..- .+....+.||
T Consensus 1024 --------QnLLiLtA-----ikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1024 --------QNLLILTA-----IKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLI 1085 (1666)
T ss_pred --------hhhHHHHH-----hhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHH
Confidence 00000000 11111 1111111111 0 12567777776542 3455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 556 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
. ..++++.|.+.-++.. ....|+.+.++-.+.|.+.+|.+-|-+. -|...|.-+++.+.+.|.++
T Consensus 1086 e---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred H---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 5 3466777776655553 3557999999999999999998877554 46788999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhh
Q 003082 636 EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQ 676 (850)
Q Consensus 636 ~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~-~~~~~~~~ 676 (850)
+ ..+.+...++..-.|... ..||-+|.+ +.+.+..+
T Consensus 1151 d---Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1151 D---LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred H---HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 8 454544444455566544 468888887 55555433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-05 Score=79.08 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=93.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCC
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKW 378 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~ 378 (850)
.|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|... ..+.++.+.-.+.
T Consensus 115 ~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 115 EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchh
Confidence 34555555554321 3556666778888888888888888888876 3334332 2222333333346
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFR 457 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~ 457 (850)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.. +-+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88888888887654 55678888888888888888888888888876554 33556666677777777777 55666666
Q ss_pred HHhh
Q 003082 458 SWTL 461 (850)
Q Consensus 458 ~m~~ 461 (850)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.01 Score=67.13 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=140.6
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH
Q 003082 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (850)
Q Consensus 81 l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~ 160 (850)
....+++..|++....+++..++...+.. + -.....+.|+.++|..+++... +..++ +..+.+++-
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~v------L--kaLsl~r~gk~~ea~~~Le~~~--~~~~~---D~~tLq~l~- 84 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKV------L--KALSLFRLGKGDEALKLLEALY--GLKGT---DDLTLQFLQ- 84 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHH------H--HHHHHHHhcCchhHHHHHhhhc--cCCCC---chHHHHHHH-
Confidence 45668899999999999988443221111 1 1123458999999999988777 54554 333344443
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
..|.+.++.++|+.+|++..+.. |. -.....+-.+|++.+++. .|++.+..+|++...|-++++.+...-.
T Consensus 85 --~~y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 85 --NVYRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred --HHHHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence 33557899999999999998764 54 455566677888877765 5778889999998887777776665421
Q ss_pred ----------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCcCHHHHHHHHHh--hc
Q 003082 237 ----------LVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--NA 302 (850)
Q Consensus 237 ----------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~t~~~ll~~--~~ 302 (850)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ...+.-..-+...-+--+.. ..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 234667777777654 21122222222334557788999999983 33333223333333333332 34
Q ss_pred CChHHHHHHHHHHHHcC
Q 003082 303 HDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g 319 (850)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 67777777777777765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0043 Score=67.88 Aligned_cols=220 Identities=11% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 277 (850)
+.-+...|+++.|+..|-... -....+.+-.....|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.+
T Consensus 713 g~hl~~~~q~daainhfiea~----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 444556677777766653221 11223555666778888888888776532 223347777888888899999988
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 278 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
+|.+. +.+-=.+.|.+.++++..|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.
T Consensus 787 lf~e~-------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~------ 851 (1636)
T KOG3616|consen 787 LFTEA-------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------ 851 (1636)
T ss_pred HHHhc-------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------
Confidence 88753 222223344456678888877765543 434455666666666778888888888875442
Q ss_pred CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.|+ ..|.+|-+.|..++.+++.++-.-. .-..|...+..-|-..|++..|..-|-+.. -|.
T Consensus 852 --~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k 912 (1636)
T KOG3616|consen 852 --EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK 912 (1636)
T ss_pred --Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence 354 3567788888888888887764321 123455566677778888888887665442 366
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 003082 438 ILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~ 457 (850)
+-+++|-.++.|++|.++-+
T Consensus 913 aavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHh
Confidence 77788888888888877664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0083 Score=65.76 Aligned_cols=191 Identities=12% Similarity=0.142 Sum_probs=120.2
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
....+|.+|+.+++.+..... ....|-.++.-|...|+++.|.++|-.. ..+...|.+|.+.|+|.+|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHHHHHHhccccHHHHHHHHH
Confidence 345788888888887765431 1233456778888888888888887553 456677888888888888888766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
+.. |++.....|-+-..-+-+.|++.+|.++|-.+. .|+... -|.-..|..++.+++.++--. ..-..
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ai---qmydk~~~~ddmirlv~k~h~---d~l~d 883 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKAI---QMYDKHGLDDDMIRLVEKHHG---DHLHD 883 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHHH---HHHHhhCcchHHHHHHHHhCh---hhhhH
Confidence 543 444555667666666778888888888775433 233211 111122334444444332211 11234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
|.-.+..-|...|++..|++-|-+.. -|.+-+++|-..+.|++|.++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~-------------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG-------------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh-------------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 55566777778888888887775432 255666777778888887766543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00053 Score=68.44 Aligned_cols=299 Identities=11% Similarity=0.074 Sum_probs=180.7
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
++..|.+.+|+.-|..+. ...|+. +.++...+..|...|+..-|+.=+.+.++.. |+-..+-..-+..++
T Consensus 48 lla~~Q~sDALt~yHaAv--e~dp~~------Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAV--EGDPNN------YQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLL 117 (504)
T ss_pred HHHhhhHHHHHHHHHHHH--cCCchh------HHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhh
Confidence 446799999999999998 457765 6777777788888899999998888887654 665444445566778
Q ss_pred cCCChHHHHHHhhhC----CCCc---ch------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 003082 203 NKPDVNLAIRYACIV----PRAD---IL------------FCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTI 262 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~---~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 262 (850)
++|.++.|..-|+.+ |++. .+ .-..+..+.-.|+...|+.....+++. .| |...|..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHH
Confidence 888888888877664 2211 11 112233444556666666666666663 33 55556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003082 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341 (850)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~ 341 (850)
..+|...|....|+.=+....+..-.-+...|.+ -+.-..|+.+.++...++.++. .||.-.+-.. | ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHH
Confidence 6666666666666665555443321111111111 1111234555555555554443 2332221110 0 1111
Q ss_pred HHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHH
Q 003082 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW---SSLINACANAGLVEQAM 418 (850)
Q Consensus 342 ~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~A~ 418 (850)
+..+.++.|+ .....++|.+++.-.+..++....-..++| ..+-.++...|++.+|+
T Consensus 268 Kv~K~les~e--------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 268 KVVKSLESAE--------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHHHHHHHH--------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 1122222222 234567777888877777766444233333 44555666778899999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 419 HLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 419 ~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
+...+.++. .|| +.++.--..+|.-...+|.|..-|+...+.+
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 998888874 444 7788888888888889999999888776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-05 Score=81.50 Aligned_cols=253 Identities=13% Similarity=0.042 Sum_probs=175.0
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
++..+..+.+.|+..+|.-.|+.. |....+|.-|+......++-..|+..+.+.++..+ .|..+.-.|.-.|...
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhh
Confidence 455666667777777776666553 55557777777777777777888888888877532 3666777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCC--------cCHHHHHHHHHhhcC--ChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcC
Q 003082 270 GDYMKSRAIYEDLRSQNVT--------LNIYVFNSLMNVNAH--DLKFTLEVYKNMQ-KLGVMADMASYNILLKACCLAG 338 (850)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~--------pd~~t~~~ll~~~~~--~~~~a~~l~~~m~-~~g~~pd~~t~~~Ll~~~~~~g 338 (850)
|.-.+|+.+++.-.....+ ++..+-+. ....+ .+....++|-++. ..+..+|..+++.|--.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888877765443210 00000000 00011 2334556666664 4454578888888888888999
Q ss_pred ChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 003082 339 NTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQ 416 (850)
Q Consensus 339 ~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 416 (850)
+++.|.+.|+...+ ++| |..+||.|-..++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.+++
T Consensus 445 efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999887 455 5668999999999999999999999999875 555 3445556667889999999
Q ss_pred HHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 417 AMHLFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 417 A~~l~~~m~~---~------g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
|.+.|-..+. . +..++...|.+|=.++.-.++.|.+.+...
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 9988876553 1 223455678777777777888886666553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0035 Score=71.16 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=162.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL-CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
..+-++||..+|++.-.. ...++. ...-++.+.|.++.+.... +..|..+..+-.+.|...+|++-|-
T Consensus 1060 ~~~LyEEAF~ifkkf~~n----------~~A~~VLie~i~~ldRA~efAe~~n~-p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMN----------VSAIQVLIENIGSLDRAYEFAERCNE-PAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhHHHHHHHHHHHhccc----------HHHHHHHHHHhhhHHHHHHHHHhhCC-hHHHHHHHHHHHhcCchHHHHHHHH
Confidence 457778888888764221 112222 2345677777777766533 3678888888888888888887664
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
.. .|+..|..+++...+.|.|++-...+...++..-.|.+.+--.+-.+..+++.+..+++ .-||..
T Consensus 1129 ka------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1129 KA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred hc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 32 35667888889889999999888888777776666766654333333334444333222 247777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
....+-+-|...|.++.|.-+|.. +.-|..|...+...|++..|.+.-++.- +..||.-+-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vc 1256 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVC 1256 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHH
Confidence 777788888888888888777653 3346777777888888888877665532 677888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.+|...+.+.-| +|....+.....-..-++.-|-..|-+++-..+++.-
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 777776655443 2322223344445666777777777777777777643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-05 Score=88.28 Aligned_cols=119 Identities=8% Similarity=-0.076 Sum_probs=60.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
+.|++++|..+|+.+. .+.|+. ..+.++.+..+.+.+++++|+..+++.+... |++.
T Consensus 98 ~~g~~~ea~~~l~~~~--~~~Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~------------- 154 (694)
T PRK15179 98 AAHRSDEGLAVWRGIH--QRFPDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSA------------- 154 (694)
T ss_pred HcCCcHHHHHHHHHHH--hhCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCH-------------
Confidence 5555666666655555 335544 3344444445555555565555555555443 4444
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
...+.+..++.+.|++++|..+|+++...+ +-+..++..+..++-+.|+.++|...|+...+
T Consensus 155 -----------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 155 -----------------REILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -----------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555555555555555421 12244444555555555555555555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-05 Score=72.88 Aligned_cols=147 Identities=8% Similarity=0.037 Sum_probs=114.1
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
-.+..|...|+++.+....+... .|.. .+...++.++++..++..++.. |++...|..+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~----~~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~L 79 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA----DPLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALL 79 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh----Cccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 34557889999988766653332 2211 0112477788888888888766 8899999999
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
+..|...|+++.|+..++.+ |++..++..+..+ |...|+ .++|.+++++..+.++ .+..++..+...+.+.|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcC
Confidence 99999999999999888764 7788888888886 467777 5999999999998643 36778888888999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 003082 271 DYMKSRAIYEDLRSQN 286 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~g 286 (850)
++++|+..|+.+.+..
T Consensus 159 ~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 159 DYAQAIELWQKVLDLN 174 (198)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988753
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0045 Score=66.05 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=71.2
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
.+..|+++.|+..|-+++ .+.|.++. ++.+-...|+..|++++|++=-.+-.+.. |+-+..|+..+.++.
T Consensus 12 a~s~~d~~~ai~~~t~ai--~l~p~nhv------lySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAI--MLSPTNHV------LYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALF 81 (539)
T ss_pred hcccccHHHHHHHHHHHH--ccCCCccc------hhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHH
Confidence 347799999999999998 77776432 23344445667899999888666655543 777777888888888
Q ss_pred cCCChHHHHHHhhh----CCCCcchHHHHHHHH
Q 003082 203 NKPDVNLAIRYACI----VPRADILFCNFVREF 231 (850)
Q Consensus 203 ~~~~~~~A~~~~~~----~p~~~~~~~~li~~~ 231 (850)
-.|++++|+..|.. -|++...+..|..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 88888888877654 366666666676666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00032 Score=73.34 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
..++..+-..+...+++++|+.+++.++.. +|..++.... ...++. ..| .+++++..++++.+ ..|+.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~---R~~iL~---~L~~~l~eeL~~~~~~i~--~npkn- 105 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHF---RRLCLE---ALDADLEEELDFAEDVAE--DNPKN- 105 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHH---HHHHHH---HcchhHHHHHHHHHHHHH--HCCcc-
Confidence 445555666677788999999999999988 7777665332 222222 335 57899999999884 46655
Q ss_pred cchhhhHHHHHHHHhhhhcCc--HHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcch
Q 003082 150 FDGSGFKLLKNECQRLLDSGE--VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL 223 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~ 223 (850)
+.++......+.+.|+ .++++.+++++++.. |++..+|+..+.++...|++++++.++..+ |.+..+
T Consensus 106 -----yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 106 -----YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred -----hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 4444444333434454 256777777777654 666666666666666666666666555443 444455
Q ss_pred HHHHHHHHHhc---CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 224 FCNFVREFGKK---RDL----VSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 224 ~~~li~~~~~~---g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
|+.....+.+. |.+ ++++.....++... +-|...|+.+..++..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 55444433332 112 23444444444432 1244455555555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-05 Score=78.72 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH---HHHHhhcC--
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNAH-- 303 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~~~~~-- 303 (850)
..|...|++++|+++++.. .+.......+.+|.+.++++.|.+.++.|.+. ..|....+ +.++...|
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCch
Confidence 3344455555555444321 23444444555555555555555555555543 22322211 11222222
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH-HHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW-QMA 382 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~-~~A 382 (850)
.+.+|.-+|+++... +.+++.+.|.+..+....|++++|.+++.+.... -+-|..+...++-.....|+. +.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHhCCChhHH
Confidence 455666666665442 3456667777777777777777777777665431 122344555555555566655 556
Q ss_pred HHHHHHHHHC
Q 003082 383 LKVKEDMLSA 392 (850)
Q Consensus 383 ~~l~~~m~~~ 392 (850)
.+.+.++...
T Consensus 256 ~~~l~qL~~~ 265 (290)
T PF04733_consen 256 ERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHHHHHh
Confidence 6677776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00037 Score=72.93 Aligned_cols=199 Identities=11% Similarity=-0.045 Sum_probs=130.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
..++.++|+..+.+++ .+.|+. ++++......+...| .+++++..++++.+.. |++...|+.....+.+
T Consensus 49 ~~e~serAL~lt~~aI--~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 49 SDERSPRALDLTADVI--RLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEK 118 (320)
T ss_pred cCCCCHHHHHHHHHHH--HHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHH
Confidence 4578889999999999 568876 455555555555667 6799999999998876 7787788877666666
Q ss_pred CCCh--HHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH--
Q 003082 204 KPDV--NLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC---GDY-- 272 (850)
Q Consensus 204 ~~~~--~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~-- 272 (850)
.|.. +.++.+++. -|++..+|+...-++.+.|++++|++.++++++.++ .|..+|+....++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 6653 455555533 377778888888888888888888888888888654 4566677666555544 222
Q ss_pred --HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 273 --MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (850)
Q Consensus 273 --~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 336 (850)
+++++...++.... +-|...|+.+-..+.. ...+|.+.+.+....+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34555555555432 2234445444443321 2344666666655533 3356666677777765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00035 Score=68.29 Aligned_cols=306 Identities=12% Similarity=0.010 Sum_probs=197.3
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
.+..++.+|++++..-.+. .|.. ...+.-++..|....++..|...++++.... |.-...-.+-++.+-+
T Consensus 21 I~d~ry~DaI~~l~s~~Er--~p~~------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--SPRS------RAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--Cccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence 4789999999998877643 4432 2222223344556789999999999998765 5444444456677788
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHH----HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFV----REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 279 (850)
.+.+..|+++...+.+++...+..+ ...-..+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 8999999999888877654443322 2233567888888888876542 23334444444456889999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 280 EDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMA----SYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 280 ~~m~~~g~~pd~~t~~~ll~~~~-~~~~~a~~l~~~m~~~g~~pd~~----t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
+...+-|---....||.-+.-+. ++.+.|++...+++++|+.-.+. .-.-.+++-. .|+. ..+..
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh~------ 237 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLHQ------ 237 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHHH------
Confidence 99887543344567777776654 68999999999999988642211 0001111000 0110 00000
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (850)
+ .=+..+|.-...+.+.|+++.|.+.+-+|- +.....|.+|...+.-.- -.+++.+..+-+..+.+.. +-..
T Consensus 238 -S----al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 238 -S----ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred -H----HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCCh
Confidence 0 012345555556788999999999998885 333456778776654322 2344555555566666553 3456
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 434 QCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.||..++-.|||..-++.|-+++.+-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 78999999999999999999988764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0006 Score=74.99 Aligned_cols=212 Identities=14% Similarity=0.071 Sum_probs=119.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC--
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-- 303 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-- 303 (850)
.+...+...|-..+|+.+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34555555555555655555432 3444555555555555555555554442 4555555555544332
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
-++.|.++++..... .--.+.......++++++.+.|+.-.++ -+.-..+|-.+-.+..+.++++.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHH
Confidence 244455555443221 0001111112256677777666655442 1233456666666666777777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 384 KVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 384 ~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+.. .-+...|-..+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777766653 33 35567777777777777777777777777665 334445555555566777777777777776655
Q ss_pred c
Q 003082 463 K 463 (850)
Q Consensus 463 ~ 463 (850)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0003 Score=81.18 Aligned_cols=142 Identities=8% Similarity=-0.082 Sum_probs=106.7
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
.+++..++......|++++|..+++..++.. |+. ..+...++..+.+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~------------------------------~~a~~~~a~~L~~~ 133 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDS------------------------------SEAFILMLRGVKRQ 133 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCc------------------------------HHHHHHHHHHHHHh
Confidence 4566666777778899999999999887654 443 36677788899999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHH
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~ 312 (850)
+++++|+..+++.....+ -+....+.+..++.+.|++++|..+|+++...+. -+..++.++-.+ ..|+.++|...|
T Consensus 134 ~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred ccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998542 4667788888999999999999999999998432 224444444444 458999999999
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q 003082 313 KNMQKLGVMADMASYNILL 331 (850)
Q Consensus 313 ~~m~~~g~~pd~~t~~~Ll 331 (850)
+...+.- .+...-|+.++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 212 QAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhh-CcchHHHHHHH
Confidence 9987743 23445555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.011 Score=63.22 Aligned_cols=379 Identities=11% Similarity=0.082 Sum_probs=219.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
...|+++.|+.+|...+... |.+.+.+++-..+|...|++.+|+.-. +.-|..+..|+.++.++.-.|+|++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 35799999999999887655 889999999999999999999988654 345888899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHhC---CCCcCHHHHHHHHHhhcC---------
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY------EDLRSQ---NVTLNIYVFNSLMNVNAH--------- 303 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~---g~~pd~~t~~~ll~~~~~--------- 303 (850)
.-|.+-++.. +.|...++-+.+++... . .+-+.| ..+... ........|..++.....
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988753 24667788888877111 1 111111 111100 000111122222222110
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH------------HHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV------------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~------------~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+.+........+...+. . .+...|... ....+..++.+..+ ..--..-+..+.+
T Consensus 167 ~d~r~m~a~~~l~~~~~--~---------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDE--L---------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGN 232 (539)
T ss_pred ccHHHHHHHHHHhcCcc--c---------cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHH
Confidence 00000111111100000 0 000000000 00000000000000 0001223556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHH
Q 003082 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN-------ILLQACV 444 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-------~ll~~~~ 444 (850)
+.-+..+++.|.+-+....+.. -++.-++....+|...|.+.+....-+...+.|.. ...-|+ .+-.+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 7778888888998888887765 35555677777888888888877777776665522 122232 2334667
Q ss_pred HhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHH
Q 003082 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~ 524 (850)
+.++++.|...|.+...... .|+..+-
T Consensus 310 k~~~~~~ai~~~~kaLte~R-----------------------------------------------t~~~ls~------ 336 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHR-----------------------------------------------TPDLLSK------ 336 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhc-----------------------------------------------CHHHHHH------
Confidence 77888888888877543221 1221110
Q ss_pred HhccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003082 525 CCTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 525 ~~~~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 603 (850)
.+..+++........- +.|... -.-.-.+.+.+.|++..|...+.++++.. +-|...|....-+|.+.|.+..|+
T Consensus 337 -lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 337 -LKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred -HHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHH
Confidence 0112222222222221 223221 11122667788999999999999999875 557889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003082 604 SLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (850)
Q Consensus 604 ~l~~~m~~~g~~p~~~t~~~li~a~~~~g 632 (850)
+=-+...+. .|+ .+.+|.|.|
T Consensus 413 ~Da~~~ieL--~p~------~~kgy~RKg 433 (539)
T KOG0548|consen 413 KDAKKCIEL--DPN------FIKAYLRKG 433 (539)
T ss_pred HHHHHHHhc--Cch------HHHHHHHHH
Confidence 887777664 343 345555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0008 Score=64.72 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=126.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (850)
..+.++..++..+++... +.+..-.--+.++..++.+.+..|+.+.|...+++.... .|.. .....-.+.
T Consensus 25 ~rnseevv~l~~~~~~~~--k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S------~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYS--KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGS------KRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHh--hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCC------hhHHHHHHH
Confidence 356677777777776542 111000111445556666777889999999999988753 3554 222333334
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH----HhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+-..|.+++|+++++.++... |++.+.+-.-+...-.+|+..+|++ +.+.++.+..+|..|...|...|+|++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 4556799999999999998765 7776666655555556676666665 567788888889889999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 285 (850)
|.-.+++++-. .| +...+..+.+.+--.| ++..|...|.+..+.
T Consensus 173 A~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 98888888763 34 5555666766655444 456677777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00015 Score=70.59 Aligned_cols=151 Identities=5% Similarity=-0.057 Sum_probs=114.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
.+..|...|+++......+.+.. |.. .+...++.++++..|++.+ ...|+. .+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L--~~~P~~------~~ 74 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKI--RANPQN------SE 74 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHH--HHCCCC------HH
Confidence 34567888888887666533321 110 1113577788899998888 447776 56
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH-HcCCC--hHHHHHHhhhC----CCCcchHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC-VNKPD--VNLAIRYACIV----PRADILFCNFVR 229 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~----p~~~~~~~~li~ 229 (850)
.+..++..+...|++++|+..|++..... |++...+..++.++ ...|+ .++|...++.+ |.+..++..++.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 77777888889999999999999988776 88888888888864 66676 58898887664 777789999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMY 257 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 257 (850)
.+.+.|++++|+..|+.+.+... |+..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~-~~~~ 179 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNS-PRVN 179 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCcc
Confidence 99999999999999999998644 4443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00098 Score=77.69 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=150.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH--hhhCCCCc-----------
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY--ACIVPRAD----------- 221 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--~~~~p~~~----------- 221 (850)
++++..+...+...+++++|+++.+..++.. |+....++..+..+.+.++++.+..+ ...++.+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 5666666677778999999999999777655 88888888888888888887766543 23334433
Q ss_pred --------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CcC
Q 003082 222 --------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLN 290 (850)
Q Consensus 222 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd 290 (850)
.++..|+.+|-+.|+.++|..+|+++++.. +.|..+.|.+...|+.. ++++|.+++......-+ +++
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 677889999999999999999999999976 35888999999999999 99999999988876421 111
Q ss_pred --HHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 291 --IYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 291 --~~t~~~ll~~~~~~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
...|.-++..-..+++.-.++.+.+... |..--+.++-.|-..|-+.++++++..+++.+.+.. +-|.....
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~ 261 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKARE 261 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHH
Confidence 1123333332333555556666666543 444455666667777778888888888888887632 22444555
Q ss_pred HHHHHHH
Q 003082 368 TIVKVFA 374 (850)
Q Consensus 368 ~li~~~~ 374 (850)
-++..|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 5665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00081 Score=65.33 Aligned_cols=167 Identities=11% Similarity=-0.002 Sum_probs=124.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
-|.+..+ ..+...+.-.|+-+.+..+....... ...+....+..+....+.|++.+|...|.+....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----------- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----------
Confidence 3444455 56667777777777777666654432 2235556666777778888888888888776642
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~ 376 (850)
-++|...||.+--+|.+.|++++|..-|.+..++ ..-+...+|.|.-.|.-.
T Consensus 130 -----------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 130 -----------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLR 181 (257)
T ss_pred -----------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHc
Confidence 2678889999999999999999999999888874 233456778888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (850)
Q Consensus 377 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 425 (850)
|+++.|..++......+.. |...-..+.......|++++|..+...-.
T Consensus 182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999888876544 67777788888889999999988876554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.6e-05 Score=67.92 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=57.3
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|+..|+++. .+.|+. .+++...+..+...|++++|+..|++..... |++
T Consensus 34 ~~~~g~~~~A~~~~~~al--~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~------------ 91 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLV--MAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASH------------ 91 (144)
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCC------------
Confidence 346777777777777777 445654 4455555555666777777777777776543 444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
..++..++..+.+.|++++|+..|+..++.
T Consensus 92 ------------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 ------------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred ------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666666677777777777776664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.7e-06 Score=54.63 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 617 (850)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0035 Score=73.21 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (850)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 331 (850)
+...+..|+..|...+++++|.++.+...+. .|+. ..+..++....++...+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556667777776777777777777655543 3332 33333322222222221111 344
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003082 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (850)
Q Consensus 332 ~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 411 (850)
.......++.....++..|.. ..-+...+-.+..+|-+.|+.++|..+++++++.... |....|.+...|+..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE 163 (906)
T ss_pred hhcccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh
Confidence 444444455444444445544 2334556777778888888888888888888887744 788888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhccccc
Q 003082 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (850)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (850)
++++|..++.+.... |....++..+.++|..+....
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~---------------------------- 199 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN---------------------------- 199 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC----------------------------
Confidence 888888888777653 666678888888888776542
Q ss_pred CCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003082 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQI 570 (850)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l 570 (850)
|+ +++.-..+.+.+... |..--+.++--+-..|-+..+++++..+
T Consensus 200 ---------------------~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 200 ---------------------SD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred ---------------------cc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 11 111222233333322 2223344555566667777778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 571 LKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 571 ~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
|+.+.+.. +-|.....-++.+|.
T Consensus 246 LK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcC-CcchhhHHHHHHHHH
Confidence 88887753 225555666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0018 Score=62.91 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=134.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCChHHHH-HHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSAL-RAYD 245 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~-~~~~~li~~~~~~g~~~~A~-~~~~ 245 (850)
.|.+-.++...+.... .+.......++.++|.-.|.+...+.-.......+ .+.-.+...+...++-++-+ ++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4777766665544322 23445556677788887777655433222211111 11222222222333333333 3445
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
.+.......+......-...|...|++++|+..... |-..+....+.-|.....+.+.|.+.+++|... .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 555443333433333334557888889988888765 223455555555555666777777777777763 2556
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 326 SYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 326 t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-...++...|++++|..++++.+..... +..|.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~-----k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 66656555553 3456677777777654 24666666676666677777777777777777665544 45555
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHH
Q 003082 402 SSLINACANAGL-VEQAMHLFEEMLQ 426 (850)
Q Consensus 402 ~~li~~~~~~g~-~~~A~~l~~~m~~ 426 (850)
..+|-+-...|. .+...+.+.++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555544444443 3334444455443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.055 Score=61.53 Aligned_cols=441 Identities=11% Similarity=0.114 Sum_probs=247.9
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH--HcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC--VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A 240 (850)
+.+++..|+....++++.. |+.. +..+++++ .+.|..++|....+.. +.++.+...+-..|.+.++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4688899999999988765 5543 44555554 6899999999877653 45667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc----C--------ChHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFT 308 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~----~--------~~~~a 308 (850)
..+|++.... .|+......+..+|.+.+.+.+-.+.=-+|-+. ++-+.+.|-++++... + -...|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999998874 477777777778899988876544443333332 2334566656655421 1 13457
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 309 LEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYG-EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 309 ~~l~~~m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~-~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.+.++.+.+.+ -.-+..-.-.-...+...|++++|++++. ..... ....+...-+.-+..+...++|.+..++-
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~----l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK----LTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 78888887654 22233333334455667899999999984 22221 12334444556778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHhC
Q 003082 387 EDMLSAGVTPNTITWSSLINACANA----------------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC---VEAC 447 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~----------------g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~---~~~g 447 (850)
.++...|.. | |.+.++.+++. +..+...+...+..... .-+ .|-+=+.++ ..-|
T Consensus 250 ~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~g 322 (932)
T KOG2053|consen 250 SRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIG 322 (932)
T ss_pred HHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccC
Confidence 999988643 3 44444433321 12222222222222221 111 122222222 2346
Q ss_pred CHHHHHHHH-HHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccccccccc-CCCcCH---------H
Q 003082 448 QFDRAFRLF-RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF-SFKPTT---------T 516 (850)
Q Consensus 448 ~~~~A~~l~-~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~---------~ 516 (850)
+.+++.-.| +..-... ....+.... ...+.......++... +..++. .
T Consensus 323 d~ee~~~~y~~kfg~kp---cc~~Dl~~y------------------l~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 323 DSEEMLSYYFKKFGDKP---CCAIDLNHY------------------LGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred ChHHHHHHHHHHhCCCc---HhHhhHHHh------------------hccCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 666654433 2221110 000000000 0000000000000000 111222 2
Q ss_pred HHHHHHHHHhcc-----HHHHHHHHHHHH---Hc------CCCCCHHH---------HHHHHHHHHcCCCHH---HHHHH
Q 003082 517 TYNILMKACCTD-----YYRVKALMNEMR---TV------GLSPNHIS---------WTILIDACGGSGNVE---GALQI 570 (850)
Q Consensus 517 t~~~li~~~~~~-----~~~a~~l~~~m~---~~------g~~p~~~t---------y~~li~~~~~~g~~~---~A~~l 570 (850)
+.+..+...++. .+....++.+.. +. ++-|+..+ -+.|++.|-+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344444444442 233334443222 22 34455443 367888888888766 34444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 571 LKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 571 ~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
++.-.... +-|..+--.+|..|+--|-+..|.++|+.|--+.|+-|..-|..+ +-+...|++..+.....-.-.|-
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHH
Confidence 44444321 234445556788999999999999999999877787777666544 44455677776554433333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=67.49 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 133 ~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
...|++++ .+.|+. +...+..+...|++++|+..|+..+... |
T Consensus 13 ~~~~~~al--~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~--P------------------------ 55 (144)
T PRK15359 13 EDILKQLL--SVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQ--P------------------------ 55 (144)
T ss_pred HHHHHHHH--HcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------------------
Confidence 34566666 445543 1223344556788888888887776543 3
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
.+..++..++.++.+.|++++|+..|+...... +.+...+..+..++...|++++|...|+...+. .|+..
T Consensus 56 ------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 56 ------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred ------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 334677889999999999999999999999854 257788999999999999999999999999876 46544
Q ss_pred HHH
Q 003082 293 VFN 295 (850)
Q Consensus 293 t~~ 295 (850)
.+.
T Consensus 127 ~~~ 129 (144)
T PRK15359 127 SWS 129 (144)
T ss_pred HHH
Confidence 443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=60.19 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCh--H---HHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGSL--H---EVQQCLAVYQDMWKAGYKANDTYLK 660 (850)
Q Consensus 587 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~a~~~~g~~--~---~a~~a~~l~~~M~~~g~~p~~~~~~ 660 (850)
...|..|...|++.....+|+.+++.|+ .|+..+|+.++++.++..-- + +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888889999999999888 88999999999888765321 1 3456788999999999999999999
Q ss_pred HHHHHHHhhh
Q 003082 661 ELIEEWCEGV 670 (850)
Q Consensus 661 ~li~~~~~~~ 670 (850)
.++..+++|-
T Consensus 109 ivl~~LlkgS 118 (120)
T PF08579_consen 109 IVLGSLLKGS 118 (120)
T ss_pred HHHHHHHHhh
Confidence 9999888763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00065 Score=79.59 Aligned_cols=214 Identities=10% Similarity=0.015 Sum_probs=141.9
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
.+.++.+|++ .-.|.......+..+..+.|.+++++++..-.-.+.-.-+-.|..+-++-. .-|.-+...++|+++
T Consensus 1448 erlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1448 ERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHH
Confidence 3456778888 778888899999999999999999999875311111111111222222222 336777888999998
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh---
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI--- 216 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--- 216 (850)
.+ +...+..+..++..|.+.+.+++|.++|+.|.+..- .....|...+..+.++.+-+.|..++..
T Consensus 1524 cq---------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1524 CQ---------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HH---------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 85 223377888899999999999999999999987542 3344566666666666666666555433
Q ss_pred -CCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 003082 217 -VPRAD--ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (850)
Q Consensus 217 -~p~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (850)
+|... ....-.+..-.+.|+.+.+..+|+..+...+ --...|+..|+.-.+.|+.+.+..+|++....++.|
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 35432 2333455556667777777777777665422 245567777777777777777777777776665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0008 Score=68.09 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=108.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCH-HHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI-YVFNSL 297 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~-~t~~~l 297 (850)
..+..++..+...|++++|...|+++....+. | ...++..+..++...|++++|...|+.+.+.... +.. .++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 56777888899999999999999998875321 1 1246777888899999999999999998865221 111 011111
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHHHHHHHHHHhc
Q 003082 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADA 376 (850)
Q Consensus 298 l~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty~~li~~~~~~ 376 (850)
-.++ ++. +...+...|+.++|.+.|+.+... .|+. ..+..+... ..
T Consensus 114 g~~~----------~~~---------------~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~~~~-~~- 160 (235)
T TIGR03302 114 GLSN----------YNQ---------------IDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAKKRM-DY- 160 (235)
T ss_pred HHHH----------HHh---------------cccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHHHHH-HH-
Confidence 0000 000 000112236677777777777652 3332 222211111 00
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 377 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
.... . ......+...+.+.|++++|...++...+..- +.....+..+..++.+.|++++|..
T Consensus 161 --~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 161 --LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred --HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 0 00112344566777777777777777766521 1123566677777777777777777
Q ss_pred HHHHHhh
Q 003082 455 LFRSWTL 461 (850)
Q Consensus 455 l~~~m~~ 461 (850)
.++.+..
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHh
Confidence 7766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.071 Score=61.26 Aligned_cols=178 Identities=8% Similarity=0.034 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (850)
.+...|+..|-++. .+.|+ ....+..+... |.+.-+...|.+.|.+.-+. .+.+...+..+...|++..+
T Consensus 472 K~~~~al~ali~al--rld~~---~apaf~~LG~i---Yrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 472 KNSALALHALIRAL--RLDVS---LAPAFAFLGQI---YRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hhHHHHHHHHHHHH--hcccc---hhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhcccc
Confidence 45777888887777 33443 22334444444 33444778889999876544 47788888999999999999
Q ss_pred hHHHHHHhhhC----CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 207 VNLAIRYACIV----PRAD--ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 207 ~~~A~~~~~~~----p~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
+++|....-.. |... ..|-...-.|...++...|+.-|+...+..+ .|...|..++.+|..+|++..|+.+|+
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99998873222 2111 2233366778888999999999999887532 478899999999999999999999998
Q ss_pred HHHhCCCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 281 DLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 281 ~m~~~g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
..... .|+. ..+-+.+..-.|.+.+++..+.....
T Consensus 621 kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 87654 4543 33445555566788888887777654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=52.94 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 616 (850)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=52.49 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455556666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00071 Score=65.69 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=56.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+.-.|+-+....+........ +.+.......++...+.|++..|+..++++ |++..+|+.+.-+|.+.|++++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhH
Confidence 3334455555555555433222 333333333455555555555555554442 4444555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|..-|.+..+..+ -+...+|.|.-.|.-.|+++.|..++......
T Consensus 153 Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 153 ARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5555555554311 23334444444455555555555555544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.056 Score=57.97 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003082 518 YNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-VAYTTAIKVC 593 (850)
Q Consensus 518 ~~~li~~~~~--~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ty~~li~~~ 593 (850)
|...|+.-.+ ..+.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|+-=.++ -+|. .--...++-+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 4444444332 3567777888877777666 66677777777764 5667777777754432 2233 3335666777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 594 VRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 594 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
...++-..|..+|++....++.|+ ...|..+|.-=+..|++.. ++++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s---i~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS---ILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH---HHHHHHHHHH
Confidence 777777788888888877766554 5678888887777888766 4445555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00046 Score=72.73 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=65.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
-.+...|++++|+..++.+++. .|+..... ......+...++.++|.+.++++. ...|+. .-+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~------~~~~~i~~~~nk~~~A~e~~~kal--~l~P~~------~~l~ 377 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYL------ELAGDILLEANKAKEAIERLKKAL--ALDPNS------PLLQ 377 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHH--hcCCCc------cHHH
Confidence 3334445555555555555554 23221111 111122335555555555555555 334443 1122
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
++.+..|.+.|+..+|+..+....... |+++..|..++++|...|+..+|... ....|...|+++
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A-------------~AE~~~~~G~~~ 442 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLA-------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHH-------------HHHHHHhCCCHH
Confidence 333444445555555555555554433 55555555555555555555544332 233444555555
Q ss_pred HHHHHHHHHHh
Q 003082 239 SALRAYDASKK 249 (850)
Q Consensus 239 ~A~~~~~~m~~ 249 (850)
+|+..+....+
T Consensus 443 ~A~~~l~~A~~ 453 (484)
T COG4783 443 QAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00018 Score=65.60 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
.|++++ ...|+. ...+...+..+...|++++|.+.++.+.... |++.
T Consensus 5 ~~~~~l--~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~----------------------- 51 (135)
T TIGR02552 5 TLKDLL--GLDSEQ------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNS----------------------- 51 (135)
T ss_pred hHHHHH--cCChhh------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcH-----------------------
Confidence 455555 445654 3344555556667788888888888876654 4333
Q ss_pred hhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 003082 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (850)
Q Consensus 215 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 293 (850)
..+..+...|.+.|++++|...|++..+.+ +.+...+..+...|...|++++|...|+...+. .|+...
T Consensus 52 -------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 52 -------RYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 455566666666777777777777666543 234555666666677777777777777766654 344443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0084 Score=70.75 Aligned_cols=225 Identities=13% Similarity=0.056 Sum_probs=159.2
Q ss_pred hhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 214 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
...-|.+...|..-|..+...++.+.|++++++.+.. +.+ -...|.++++.-...|.-+...++|++..+.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--- 1526 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--- 1526 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---
Confidence 3334777788888888899999999999999988764 211 2346777777666677788888889888764
Q ss_pred cCH-HHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---
Q 003082 289 LNI-YVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--- 362 (850)
Q Consensus 289 pd~-~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--- 362 (850)
.|. ..|..|...|. +..++|.++++.|.+.- .-...+|..++..+.+..+-+.|..++.+..+ .-|.
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~------~lPk~eH 1599 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK------SLPKQEH 1599 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh------hcchhhh
Confidence 343 33555555554 58888889999887642 24677888888888888888888888887766 2343
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL 440 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll 440 (850)
+....-.+..-.+.|+.+.+..+|+..+..-.+ -...|+..|+.-.+.|+.+.+..+|+.....++.|--. .|.--+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 223344444556788888889999888876544 56789999999999999999999999988887665432 344444
Q ss_pred HHHHHhCCHH
Q 003082 441 QACVEACQFD 450 (850)
Q Consensus 441 ~~~~~~g~~~ 450 (850)
..=-+.|+-.
T Consensus 1679 eyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1679 EYEKSHGDEK 1688 (1710)
T ss_pred HHHHhcCchh
Confidence 3333344433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=73.11 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=180.6
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
-.++..+.+.|-.+.|+..|++. ..+..+|..|+..|+..+|..+..+-.+ -+|+...|-.+.+......-+++
T Consensus 402 ~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHH
Confidence 35678889999999999999875 6788899999999999999999888777 35889999999999888888999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 275 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
|.++++..-.+ ..-+-...-...+++.++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|..-..
T Consensus 476 awElsn~~sar-----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt-- 547 (777)
T KOG1128|consen 476 AWELSNYISAR-----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-- 547 (777)
T ss_pred HHHHhhhhhHH-----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--
Confidence 99999875432 11111111112468999999998877654 34567888888888899999999999988776
Q ss_pred hcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 003082 355 AKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPN 432 (850)
Q Consensus 355 ~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 432 (850)
..|| ...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+....+.|.+++|++.+..+.+.. ...|
T Consensus 548 ----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 548 ----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred ----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 4566 4579999999999999999999999999887 4467778888888899999999999999887632 1224
Q ss_pred HHHHHHHHHH
Q 003082 433 SQCCNILLQA 442 (850)
Q Consensus 433 ~~~~~~ll~~ 442 (850)
..+...++..
T Consensus 623 ~~vl~~iv~~ 632 (777)
T KOG1128|consen 623 DEVLLIIVRT 632 (777)
T ss_pred chhhHHHHHH
Confidence 4444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.4e-05 Score=51.51 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 581 (850)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00087 Score=70.69 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=99.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+...|++++|+..+..++... |+++..+...+..+.+.++.++|.+.++.+ |.......++..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 3445678888888888877654 788877778888888888888888777663 6666777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~ 318 (850)
|+.+++..... .+-|...|..|..+|...|+..++..-..+.. .+.|+++.|+..+....+.
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHh
Confidence 88888877764 33567788888888888888888777766654 3456777777666666553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00042 Score=63.10 Aligned_cols=112 Identities=9% Similarity=0.053 Sum_probs=84.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNS 296 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ 296 (850)
|.+......++..+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...|+...+.+.. ++...+-.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3333556678888999999999999999998864 347788999999999999999999999998876432 23333334
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 332 (850)
.+....|+.+.|...|+...+.. |+...+..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 126 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC--GENPEYSELKE 126 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc--cccchHHHHHH
Confidence 44456789999999999998863 56555544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=63.65 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
++.+...+..+...|++++|..+|+-+.... |.+...|..++..+-..|++.+|+..|... |+++..+..+...
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 6666666777778999999999999888765 767777777777777777777777766553 6666677777777
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777665553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.1e-05 Score=49.11 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g 613 (850)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44445555555555555555555544443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0023 Score=66.52 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+.+.+.+.|...+..|-..|++++|...|.+............. ....+......+ +.+++++|+..|+++.+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~--Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~---- 102 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE--AAKAYEEAANCY-KKGDPDEAIECYEKAIE---- 102 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH--HHHHHHHHHHHH-HHTTHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHH-HhhCHHHHHHHHHHHHH----
Confidence 34456899999999999999999999999998765422111111 112222222222 44477777777776663
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC-CChHHHHHHhhhC-------
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV------- 217 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~------- 217 (850)
.|...|++..|..++..+ +..|... |+++.|+++|..+
T Consensus 103 ------------------~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 103 ------------------IYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp ------------------HHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred ------------------HHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 233456655555544432 3334344 4555555544332
Q ss_pred CCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
... ...+..++..+.+.|++++|.++|+++...... .+.. .|-..+-++...|++..|...|++....
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 100 134556778888888888888888887664322 1222 2222333455667888888888877654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00069 Score=56.69 Aligned_cols=80 Identities=16% Similarity=0.338 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 551 WTILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTY 621 (850)
Q Consensus 551 y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~ 621 (850)
-...|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666666888888888888888888 788888888888777643 345678888999998899999999
Q ss_pred HHHHHHHHh
Q 003082 622 ITLLRARSR 630 (850)
Q Consensus 622 ~~li~a~~~ 630 (850)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0005 Score=65.04 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 003082 546 PNHISWTILIDACGG-----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS----------------KRLKQAFS 604 (850)
Q Consensus 546 p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~----------------g~~~~A~~ 604 (850)
.|..+|..+|+.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355566666666553 355665666666666666666666666666655432 24567899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003082 605 LFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 605 l~~~m~~~g~~p~~~t~~~li~a~~~~g~ 633 (850)
++++|...|+.||..|+..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999877765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.6e-05 Score=47.84 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 579 (850)
++|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=59.72 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=30.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
..++...+...++.+.+. .|+. +......+.++..+...|++++|...|+.+....
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s---~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSS---PYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCC---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 346666666666666643 3332 1112233334455566677777777777666543
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.7e-05 Score=60.18 Aligned_cols=60 Identities=27% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
+.+|||||+..+|...+..++...+..... ..+.||||.|+||. .| .+.|+++|.+.|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~-----~~~~II~G~G~~s~-~g--~~~i~~~l~~~l~~ 61 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLKGLE-----QKLVIITGKGKHSL-GG--KSGVKPALKEHLRV 61 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHcCCC-----ceEEEEEcccCCCc-cc--hhhHHHHHHhchhh
Confidence 568999999999999999999988886321 46899999999998 45 37899999998863
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.062 Score=52.55 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 562 g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
+.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..++++.....- -+..|...+|-+-...|+..++. -
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~--~ 262 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVT--E 262 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHH--H
Confidence 4566666666666543 456666666666666666777777777776666432 34555555555555556554432 2
Q ss_pred HHHHHHH
Q 003082 642 AVYQDMW 648 (850)
Q Consensus 642 ~l~~~M~ 648 (850)
+.+.++.
T Consensus 263 r~l~QLk 269 (299)
T KOG3081|consen 263 RNLSQLK 269 (299)
T ss_pred HHHHHHH
Confidence 3444444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=70.88 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=96.8
Q ss_pred CcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 512 ~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
+.+.....++++.+.. +.+.+..++...... ....-..|..++|..|.+.|..++++.+++.=...|+-||..+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4566677777777764 577888888777764 222223456789999999999999999999888899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003082 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (850)
Q Consensus 588 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~ 631 (850)
.||+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888778888888888888777
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=69.72 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=106.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.+.+.+......+++.+....+++++..++-........ ...-..|..++|+.|.+.|..++++.++..=...|+=||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~--~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC--SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc--ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 345667888888899988888899999988877653211 222234667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 446 (850)
.+|||.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999888777888888888877776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.021 Score=55.32 Aligned_cols=184 Identities=13% Similarity=0.093 Sum_probs=131.2
Q ss_pred hcCchhHHHHHHHHHHHc---C-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q 003082 125 REGRIDCVVGVLKKLNEL---G-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~---~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (850)
...+.++.++++.+++.. | ..++. ..++=..+......|+.+.|..+++++...- |.+.-.--.-+..
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML 95 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH
Confidence 456788888888887653 3 34433 4555556666778899999999999987654 5543323333445
Q ss_pred HHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
+...|++++|+++++.+ |.+..++-.-+...-.+|+--+|++-+....+. +..|...|.-+...|...|++++|.
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 56789999999998775 444455655666777788888999888888775 5578999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHH-h---hcC--ChHHHHHHHHHHHHcC
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMN-V---NAH--DLKFTLEVYKNMQKLG 319 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~-~---~~~--~~~~a~~l~~~m~~~g 319 (850)
-.++++.-. .|-...|..-+. . .+| +...+.+.|.+-.+..
T Consensus 175 fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 175 FCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999998855 555444433332 2 222 6777888888887754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.29 Score=52.75 Aligned_cols=137 Identities=15% Similarity=0.213 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 531 RVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 531 ~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
....+++++... ...|+ .+|..+++.--+..-+..|..+|.+..+.+..+ ++..++++|.-|| .++..-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 334444444432 23343 467778888888888999999999999988777 7888888988877 6788899999986
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh-hhhhh
Q 003082 609 MKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN--DTYLKELIEEWCE-GVIQD 673 (850)
Q Consensus 609 m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~--~~~~~~li~~~~~-~~~~~ 673 (850)
=..+ ..-+..--...++-+++.++-.. +..+|++....++.|| ...|+.+|+-=.. |.+..
T Consensus 427 GLkk-f~d~p~yv~~YldfL~~lNdd~N---~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 427 GLKK-FGDSPEYVLKYLDFLSHLNDDNN---ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHh-cCCChHHHHHHHHHHHHhCcchh---HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5542 22334455667777777777544 6678999998888777 4578888874332 54443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0028 Score=67.68 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..-..|+..+...++++.|+.+|+++.+. +|+... . ++..+...++-.+|+.+++++++. .|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~~------~---LA~v~l~~~~E~~AI~ll~~aL~~--~p~d--- 233 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVAV------L---LARVYLLMNEEVEAIRLLNEALKE--NPQD--- 233 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHHH------H---HHHHHHhcCcHHHHHHHHHHHHHh--CCCC---
Confidence 33344555555556666666666666665 333111 1 112223445556666666666632 3332
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
.+++.-.+..+.+.++++.|+++.+++.... |+....|..|+..|...|+++.|+...+.+|
T Consensus 234 ---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 ---SELLNLQAEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 3334333444555666666666666666544 5555556666666666666666655555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=60.90 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=116.2
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.|-..|++++|.+.|.++.+.-...+. ....-..+..+...+.+ +++++|++.+++. +..|
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A----------------~~~y 104 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKK-GDPDEAIECYEKA----------------IEIY 104 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH----------------HHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH----------------HHHH
Confidence 344678888898888888654222211 11223344444444433 3666666666554 3456
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A 275 (850)
...|++..|-+ .+..+...|... |++++|++.|++..+. |... -..++..+...+.+.|++++|
T Consensus 105 ~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 105 REAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 66777776543 455688889998 9999999999987653 2111 134577888889999999999
Q ss_pred HHHHHHHHhCCCC-----cCH--HHHHHHHH-hhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHHc--CChH
Q 003082 276 RAIYEDLRSQNVT-----LNI--YVFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCLA--GNTV 341 (850)
Q Consensus 276 ~~~~~~m~~~g~~-----pd~--~t~~~ll~-~~~~~~~~a~~l~~~m~~~--g~~pd--~~t~~~Ll~~~~~~--g~~~ 341 (850)
.++|+++...-.. .+. ..+..+|. .+.+|...|.+.|++.... ++..+ ......||.+|-.. ..+.
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999998764322 222 22233333 3557888888888887653 22222 33455566665332 2344
Q ss_pred HHHHHHHHH
Q 003082 342 LAQEIYGEV 350 (850)
Q Consensus 342 ~A~~i~~~m 350 (850)
.|..-|+.+
T Consensus 255 ~av~~~d~~ 263 (282)
T PF14938_consen 255 EAVAEYDSI 263 (282)
T ss_dssp HHCHHHTTS
T ss_pred HHHHHHccc
Confidence 555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0067 Score=64.88 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=63.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCCh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 305 (850)
.|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++++..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------------- 229 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-------------------- 229 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--------------------
Confidence 34555555556666666666655532 332 223444454455555555554443321
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh-HHHHHHHHHHhcCCHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~-ty~~li~~~~~~g~~~~A~~ 384 (850)
.+-|......-...|.+.++.+.|..+.+++.. ..|+.+ +|..|..+|...|+++.|+.
T Consensus 230 --------------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 230 --------------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred --------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 122444444445556666666666666666655 334433 56666666666666666665
Q ss_pred HHHHH
Q 003082 385 VKEDM 389 (850)
Q Consensus 385 l~~~m 389 (850)
.++.+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 55554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.03 Score=56.42 Aligned_cols=188 Identities=7% Similarity=-0.062 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
....-..+..+...|+|++|+..|+.+....+.... . ......+..++.+.+++++|+..|++.+ ...|++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--a---~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--S---QQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--H---HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCc
Confidence 333335677778899999999999999998443321 1 1112234446679999999999999999 45776532
Q ss_pred chhhhHHHHHHHHhhh------------------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 151 DGSGFKLLKNECQRLL------------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
... ++...+.... ++....+|+..|+.++..- |++...... +.....-+-..|.
T Consensus 105 ~~~---a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A--~~rl~~l~~~la~- 176 (243)
T PRK10866 105 IDY---VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDA--TKRLVFLKDRLAK- 176 (243)
T ss_pred hHH---HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHH--HHHHHHHHHHHHH-
Confidence 222 2222221110 1122456777788877654 554322211 1100000000110
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
--..++..|.+.|.+..|+.-|+.+++.= .+........++.+|...|..++|......+.
T Consensus 177 ----------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 ----------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11246788999999999999999998752 22345567788899999999999988877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0062 Score=57.84 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=77.8
Q ss_pred CCCcCHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------CHHH
Q 003082 510 SFKPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG----------------NVEG 566 (850)
Q Consensus 510 ~~~p~~~t~~~li~~~~~-------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~ 566 (850)
+-..|-.+|..+|+.|.+ +.+-....+..|.+-|+.-|..+|+.||+.+=|.. +-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 456788999999999973 46777888999999999999999999999987632 3566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL 599 (850)
Q Consensus 567 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 599 (850)
|++++++|...|+.||..|+..+++.|++.+..
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999999887763
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0055 Score=54.09 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
++...+..+.+.|++++|++.++.+.... |++.. ...++..++..+.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---------------------------~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTY---------------------------APNAHYWLGEAYYAQGK 54 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc---------------------------cHHHHHHHHHHHHhhcc
Confidence 34555666777889999998888887643 33211 01234456666666667
Q ss_pred hHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|...|+.+....+.. ...++..+..++.+.|++++|...++++.+.
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 55 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777776666532221 2345556666666667777777777766655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=51.73 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=48.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.+-..|+.++|+.+|+++++.|+.... ...+++.+...+...|++++|+.+++.....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344789999999999999987765532 2568888899999999999999999988764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0035 Score=67.30 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=57.0
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
+..+...|++++|++.|++.+... |++. ..|..+..+|.+.|++++|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~------------------------------~a~~~~a~~~~~~g~~~eAl 56 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNA------------------------------ELYADRAQANIKLGNFTEAV 56 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 334456789999999998887654 5544 34455555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..++++++... .+...|..+..+|...|++++|+..|+...+.
T Consensus 57 ~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 57 ADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666665421 24455666666666666666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.47 Score=50.13 Aligned_cols=456 Identities=13% Similarity=0.071 Sum_probs=243.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH-HHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS-LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
-.+-+++++.+|..+|.++.+.-.+. .+.+. -...++++.+|. ..+.+.-...+....+ ..|.. .+-.++..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~--~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQ--QFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHH--hcCCc-hHHHHHHH
Confidence 34677899999999999998763211 12222 223445555554 3455554444444442 23322 22233332
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH-HHHHHHHHhcCC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF-CNFVREFGKKRD 236 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~-~~li~~~~~~g~ 236 (850)
+ . .-+++.+.+|++.+......-.....+..-.++-.. ++ +..+ +..+..+...|+
T Consensus 87 L----~-~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l----------------~~--df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 87 L----V-AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL----------------FS--DFFLDEIEAHSLIETGR 143 (549)
T ss_pred H----H-HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH----------------hh--HHHHHHHHHHHHHhcCC
Confidence 2 2 336799999999988765441111111111111100 10 1222 235777888999
Q ss_pred hHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCcCH
Q 003082 237 LVSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNI 291 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~pd~ 291 (850)
+.+++.++++|...-.+ =++.+||.++-.+++.= . ++.+.-...+|... .+.|..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee 223 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE 223 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence 99999998888765333 47778888666555431 1 12222222222211 234555
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHH
Q 003082 292 YVFNSLMNVNA----HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (850)
Q Consensus 292 ~t~~~ll~~~~----~~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty 366 (850)
..+..++.-.. ....--.++++.-.+.-+.|+-. +...|+..+.. +.+++..+-+.+....-+...+-=..++
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555554321 12333344444444444556532 34445555544 4455555544443311000011124578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQC 435 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-------~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~ 435 (850)
..++....+.++...|.+.+.-+... .|+...- ..+-+..|. .-+...=+.++++....++... ..
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QL 378 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QL 378 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HH
Confidence 88888888999999999988887654 3333321 112222221 1123344555665554432211 11
Q ss_pred HHHHH---HHHHHhCC-HHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCC
Q 003082 436 CNILL---QACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (850)
Q Consensus 436 ~~~ll---~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (850)
..-|+ .-+.+.|. -++|.++++.+..-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------ 410 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------ 410 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------
Confidence 12222 23445555 777888887765421
Q ss_pred CcCHHHHHHHH----HHHhc-----cHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHcCCCHHHHHHHHHHHHH
Q 003082 512 KPTTTTYNILM----KACCT-----DYYRVKALMNEMRTVGLSPN----HISWTILIDA--CGGSGNVEGALQILKIMRE 576 (850)
Q Consensus 512 ~p~~~t~~~li----~~~~~-----~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~--~~~~g~~~~A~~l~~~m~~ 576 (850)
.-|...-|.+. .+|.. ...+-..+-+.+.+.|+.|- ...-|.|-++ +...|++.++.-.-.-+.+
T Consensus 411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ 490 (549)
T PF07079_consen 411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK 490 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 12222222222 22221 23455556666677888773 3344555444 4567888888766655555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (850)
Q Consensus 577 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 624 (850)
+.|++.+|.-+.-++....++++|..++..+ +||..++++=
T Consensus 491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 6899999999999999999999999998876 6777777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.021 Score=52.57 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--I 399 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ 399 (850)
..|..++..+ ..++...+...++.+... .+.+ ....-.+...+...|++++|...|+........|+. .
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 3455555555 478888888888888762 1122 223334556788899999999999999987643332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 400 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
..-.|...+...|++++|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34456778889999999999997754332 3344566778899999999999999875
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0036 Score=56.72 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=81.6
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
++.....+.++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++.+|+..|.......+ .|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 444556777888888999999999998774 77778889999999999999999999999888653 5777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 003082 264 DVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.++...|+.+.|.+-|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999887653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0056 Score=60.85 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
-+.+-.-.-.+++.++|.+|+..|.+.++.. |++++.|..-+.+|.+.|.++.|++-.+. -|+...+|..|..+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3344444555677888888888888887755 77766666666666666666666554333 24444556666666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|++++|++.|+..++
T Consensus 159 ~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHccCcHHHHHHHHHhhhc
Confidence 6666666666666665555
|
|
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=54.24 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=42.4
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 714 IDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 714 ~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
+|||||+..+|...+..++........ ..+.||||.|+||. .| .||++|.+.|.+
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~------~~~~II~G~G~hS~-~g----~Lk~~V~~~L~~ 55 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGI------RELRIITGKGNHSK-GG----VLKRAVRRWLEE 55 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTH------SEEEEE--STCTCC-TS----HHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCC------CEEEEEeccCCCCC-CC----cHHHHHHHHHHh
Confidence 489999999999999988888776533 46889999999997 34 399999999966
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0044 Score=61.54 Aligned_cols=103 Identities=14% Similarity=-0.027 Sum_probs=79.8
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.+.++|.+|+..|.+++ .+.|...+ .|-+.+..|.+.|.++.|++-.+..+... |....+|..++.+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI--~l~P~nAV------yycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI--ELDPTNAV------YYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHhhhHHHHHHHHHHHH--hcCCCcch------HHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHH
Confidence 347899999999999999 66887632 34555667788899999999999888765 777788999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 003082 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g 235 (850)
..|++.+|++.|++. |++.....+|-.+=-+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 999999999998764 666655555533333333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.7 Score=48.91 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003082 564 VEGALQILKIMREDGMSPDV----VAYTTAIKV--CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 564 ~~~A~~l~~~m~~~g~~pd~----~ty~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a 637 (850)
+..-..+-+-..+.|+.|-. ..-|.|-+| +..+|++.++.-.-..+.+ +.|+..+|.-+--++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e- 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE- 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH-
Confidence 33333443444455666532 233444443 3446777776665555543 56777777766555555555554
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 638 QQCLAVYQDMWKAGYKANDTYLKEL 662 (850)
Q Consensus 638 ~~a~~l~~~M~~~g~~p~~~~~~~l 662 (850)
|+++|..+ +||..++++=
T Consensus 514 --A~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 514 --AWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred --HHHHHHhC-----CCchhhHHHH
Confidence 55555443 5666555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0076 Score=64.72 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=68.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|++.|++++ .+.|+. ..++...+..+...|++++|+..+++.+... |+..
T Consensus 12 a~~~~~~~~Ai~~~~~Al--~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~----------- 70 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAI--DLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELD--PSLA----------- 70 (356)
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCH-----------
Confidence 447899999999999999 557765 5567777888889999999999999988754 4433
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+|..++.+|...|++++|+..|++.++.
T Consensus 71 -------------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 71 -------------------KAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred -------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45666677777778888888888877764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.018 Score=47.66 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 448 (850)
+...+...|++++|..++++..+.... +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 334444455555555555555443211 22444445555555555555555555554432 2222344455555555555
Q ss_pred HHHHHHHHHHH
Q 003082 449 FDRAFRLFRSW 459 (850)
Q Consensus 449 ~~~A~~l~~~m 459 (850)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.019 Score=59.37 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (850)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~-~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~ 334 (850)
.+|-.+++...+.+..+.|..+|.+..+.+ +..+++...++|..+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 456677777777777777777777777543 345566666666554 34555577777776654 345667777777777
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
.+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888776541 2222 23666666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.042 Score=48.33 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~ty~~ 403 (850)
++..+...+.+.|++++|.+.|..+.+.... .......+..+...+.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777788889999999999888763100 0111345666788888899999999999988764322 12456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7788888899999999999888763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.018 Score=47.67 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
+..+...+...|++++|...|+.+.+. .+.+...+..+...+...+++++|.+.++........ +..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHH
Confidence 455677788889999999999888762 1233466777888888889999999999988876533 4567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 003082 407 ACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.+...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 889999999999998887653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0042 Score=50.96 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555544321 1233333355555555666666555555 2111 1112222233455555566666655
Q ss_pred HHH
Q 003082 455 LFR 457 (850)
Q Consensus 455 l~~ 457 (850)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.031 Score=57.83 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 529 YYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
.+.|..+|.+..+.+ +..++....+++.. ...++.+.|.++|+...+. +..+...|...++-+.+.|+.+.|..+|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 455666666665432 22333333444432 2235556677777777654 34466667777777777777777777777
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 608 EMKHYQIQPN---LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 608 ~m~~~g~~p~---~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
+.... +.++ ...|...++-=.+.|+++. +..+.+++.+. -|+...+..+++-|
T Consensus 95 r~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~---v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 95 RAISS-LPKEKQSKKIWKKFIEFESKYGDLES---VRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHH---HHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHh-cCchhHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77653 2222 2477777777777787666 44455566553 33444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.081 Score=51.83 Aligned_cols=180 Identities=11% Similarity=-0.030 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
....-..+..+...|+|++|+..|+.+....+. +... ....-.++.++.+.|++++|+..|++.++. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a---~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYA---PQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 444456778889999999999999999988432 2111 222223445677999999999999999854 665432
Q ss_pred chhhhHHHHHHHHh-----------hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 151 DGSGFKLLKNECQR-----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 151 ~~~~~~~l~~~~~~-----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.. .++...+.. ..+++...+|+..|+.++..- |++..... |......+..
T Consensus 78 ~~---~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~--------------A~~~l~~l~~ 138 (203)
T PF13525_consen 78 AD---YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEE--------------AKKRLAELRN 138 (203)
T ss_dssp HH---HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHH--------------HHHHHHHHHH
T ss_pred hh---hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHH--------------HHHHHHHHHH
Confidence 21 222222211 123344567778888777654 55433221 1111110000
Q ss_pred C-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 003082 220 A-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 220 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 276 (850)
. ..--..++..|.+.|.+..|..-|+.+++.-+.. .....-.++.+|.+.|..+.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0 0111236788999999999999999998862211 1235667788888888877443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.027 Score=56.44 Aligned_cols=113 Identities=9% Similarity=0.079 Sum_probs=83.0
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-..++.+|+. ..-|--|+..|...|++++|...|.+..+. .|+.... ...++..+..-..+..-.++..+|++
T Consensus 145 Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 145 LETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEI---LLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 33467888888 888999999999999999999999999988 3333333 22233333222233445588999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
++ ...|++ ...+..++..+..+|++.+|+..++.|++..
T Consensus 219 al--~~D~~~------iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 219 AL--ALDPAN------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HH--hcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99 667876 4455556677788999999999999998765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.033 Score=53.02 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCC-CcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK-ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
..+...+..+...|++++|+..+++.+.....+. .. ..+..++..|.+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~la~~~~~~ 85 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRS------------------------------YILYNMGIIYASN 85 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHH------------------------------HHHHHHHHHHHHc
Confidence 3455556667778999999999988876542211 11 2344455555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhC
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--------------YMKSRAIYEDLRSQ 285 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------~~~A~~~~~~m~~~ 285 (850)
|++++|+..|++..+... .+...+..+..+|...|+ +++|.++++.....
T Consensus 86 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 86 GEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555554321 133344444445554444 56677777776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.024 Score=51.80 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
++.+...+..+-.+|++++|..+|.-+.... +.+...+..++..+-..+++++|+..|... +.++..+......
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 4555555555668899999999999887655 445555666666666677777777665442 4455555666666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|+.+.|+..|+...+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 7777777777776666655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.6 Score=51.74 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~ 233 (850)
..++..+....+++...|++|.+.|..-.. ....+..+.+...+++-+...+.+|.+....-.+..++.+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh
Confidence 344555556666666777777777764321 2234555555666666666777778888888888889999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
.|.-++|++.|-+.- . |. +-+..|....+|.+|.++-+..
T Consensus 865 vGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 998888888775432 1 32 2345566677777777776543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.83 Score=47.24 Aligned_cols=176 Identities=10% Similarity=-0.007 Sum_probs=103.6
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhC----CC-CCCCcccHHHH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFRI 197 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~l 197 (850)
+++|+.+.|..+|.++.......++.....+.+.+.+.+..+.+.+ ++++|...+++..+. +. ...... ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~-~~-- 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD-GS-- 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc-HH--
Confidence 4889999999999999854312222234466677888888888888 999999888876543 10 000000 00
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
-++ ..++..|+.+|...+..+ +|..+.+.+.+... -...++-.-+.++.+.++.++
T Consensus 81 ------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 81 ------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred ------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhH
Confidence 000 034556777777777654 45556666644322 224445555666667888999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCH
Q 003082 275 SRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (850)
Q Consensus 275 A~~~~~~m~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~ 324 (850)
+.+++.+|...-.. ....|..++.. .......+...++.+...-+.|..
T Consensus 140 ~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 140 YEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 99999998875221 22334444433 223555666666666554444443
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0085 Score=48.29 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
..+|..++..|...|++++|+..|+++++.. ...+..+......+.++...+...|++++|++.|+++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999999763 211212333355666777778899999999999999874
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.33 Score=50.61 Aligned_cols=215 Identities=13% Similarity=0.012 Sum_probs=111.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHH----HHHHHH--hhhcCchhHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV----ASGIVK--SIREGRIDCVVGV 135 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~--~~~~g~~~~A~~~ 135 (850)
++...|++ ..+|..-+..|...|+|++|+--.++.++.. |.....-....-+ +.++.+ +.+....-.+...
T Consensus 75 Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~ana 151 (486)
T KOG0550|consen 75 AIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANA 151 (486)
T ss_pred HHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhh
Confidence 66778887 7778788888888899999998888777653 2211111101111 111110 1111111112222
Q ss_pred HHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhh
Q 003082 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
|.+.. .+-|.....++.+..-+.-...+...|++++|.+.--.+++.. +.+......-+.++--.++.+.|...|.
T Consensus 152 l~~~~--~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~ 227 (486)
T KOG0550|consen 152 LPTLE--KLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQ 227 (486)
T ss_pred hhhhh--cccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHh
Confidence 22222 2333333234445555545555677899999998877776654 4444444444445555677778887776
Q ss_pred hC----CCCc------------chHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 216 IV----PRAD------------ILFCNFVREFGKKRDLVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 216 ~~----p~~~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
+. |.-. ..+..-.+-..+.|++..|.+.|.+.+...+ .++...|-....+..+.|+..+|+
T Consensus 228 qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 228 QALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred hhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhh
Confidence 64 1111 1122223444555666666666665554322 233444444445555555555555
Q ss_pred HHHHHHH
Q 003082 277 AIYEDLR 283 (850)
Q Consensus 277 ~~~~~m~ 283 (850)
.--+...
T Consensus 308 sdc~~Al 314 (486)
T KOG0550|consen 308 SDCNEAL 314 (486)
T ss_pred hhhhhhh
Confidence 5554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.24 Score=51.62 Aligned_cols=269 Identities=14% Similarity=0.085 Sum_probs=148.6
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
++.+|.+|+..|..++ .+.|+. ...+-+.+..+.-.|++++|.--.+.-+.. ++..........+.+...
T Consensus 61 k~k~Y~nal~~yt~Ai--~~~pd~------a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAI--DMCPDN------ASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHH--HhCccc------hhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 6788999999999999 557776 233444445555678888887666554332 233333444556666666
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII-DVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m 282 (850)
++.-+|.+.++.. ..+ ....|+..++....... +|.-..|-.+- .++.-.|++++|.+.--..
T Consensus 131 ~~~i~A~~~~~~~----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHHHHHhhhh----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 6666666555410 101 11122222222222211 12223333222 2344456666666655554
Q ss_pred HhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCHHHHHH---H----------HHHHHHcCChHHHHH
Q 003082 283 RSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNI---L----------LKACCLAGNTVLAQE 345 (850)
Q Consensus 283 ~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~---L----------l~~~~~~g~~~~A~~ 345 (850)
++.. ....+...+++ +..+.+.+..-|++-+..+ |+...--. . -+-..+.|.+..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 4321 11122222222 3345556666666555443 33221111 1 122357789999999
Q ss_pred HHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 003082 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA--CANAGLVEQAMHLFEE 423 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~l~~~ 423 (850)
.|.+........ ..++...|-.......+.|+.++|+.--+.....+ +......+.++ +.-.+++++|.+-|+.
T Consensus 271 ~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888754333 56667777777777888899999988888776532 23333444443 3345778888888888
Q ss_pred HHHc
Q 003082 424 MLQA 427 (850)
Q Consensus 424 m~~~ 427 (850)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.7 Score=45.24 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003082 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL--- 331 (850)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll--- 331 (850)
.+.+.++..+.-.|.+.-...++.+..+...+.+......|.+. ..||.+.|...|++..+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35566667666677788888888888876656666666666654 4578888888888776654445555555444
Q ss_pred --HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 332 --KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 332 --~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
..|.-++++..|...|+++..+. .-|...-|.=.-++.-.|+..+|++.++.|+.. .|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34445677888888888777632 224444444444455678889999999999886 44444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.091 Score=54.30 Aligned_cols=288 Identities=15% Similarity=0.043 Sum_probs=138.6
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH----hCCCCCCCcccHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIV 198 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~ 198 (850)
+++.|+....+.+|+.+++.|..- ...+..+|.++...|.-.++|++|+++...=+ ..+-+.-...+.-+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeD----l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTED----LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchH----HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 568999999999999999766432 11222334444445556689999987643211 1121222233344566
Q ss_pred HHHHcCCChHHHHHHh-hhC---------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 003082 199 QLCVNKPDVNLAIRYA-CIV---------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVC 266 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~-~~~---------p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~ 266 (850)
..+--.|.+++|+... +.+ .....++++|...|...|+.-.-..- .+.|-.+..+ .+..-+..
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~~al~~Av~f- 177 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVTSALENAVKF- 177 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHHHHHHHHHHH-
Confidence 6777778888887642 221 11236677888888777642110000 0001111110 01111111
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHHcCC
Q 003082 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNM----QKLGVM-ADMASYNILLKACCLAGN 339 (850)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m----~~~g~~-pd~~t~~~Ll~~~~~~g~ 339 (850)
|.+-+++.+.+-.++- --..|-.|=+. +.|+++.|+...+.= .+.|-. .-...+..|-+++.-.|+
T Consensus 178 -----y~eNL~l~~~lgDr~a--qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 178 -----YMENLELSEKLGDRLA--QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred -----HHHHHHHHHHhhhHHh--hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 1111111111111100 00111111111 124555554433321 112211 123456777888888889
Q ss_pred hHHHHHHHHHHHHhhh-cCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCC
Q 003082 340 TVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-----GVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~-~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~ty~~li~~~~~~g~ 413 (850)
++.|.+.|+....+.. -|.-.....+.-+|-+.|.-..+++.|+..+..-+.- ...-....|-+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 9988888875543321 1111223344555666666666666666665543211 011133455566666666666
Q ss_pred HHHHHHHHHHHHH
Q 003082 414 VEQAMHLFEEMLQ 426 (850)
Q Consensus 414 ~~~A~~l~~~m~~ 426 (850)
.++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.016 Score=44.67 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.++..+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888899999999999998864 236778888888999999999999999988754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.54 Score=43.52 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=75.4
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
+....|++.+|...|+++.. |+-.++ -.+++..+......++..+|...++.+.+.. |..
T Consensus 98 al~elGr~~EA~~hy~qals-G~fA~d------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~----------- 157 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALS-GIFAHD------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAF----------- 157 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhc-cccCCC------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Ccc-----------
Confidence 34467888888888888775 555544 3455666666666778888888887776544 211
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
.++.....+...|...|++.+|...|+.....-+.|....|- ...+.++|+.+++..-+.+
T Consensus 158 -----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 158 -----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVA 218 (251)
T ss_pred -----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHH
Confidence 112334456677777888888888888887754333333322 2334677776666554444
Q ss_pred H
Q 003082 282 L 282 (850)
Q Consensus 282 m 282 (850)
+
T Consensus 219 v 219 (251)
T COG4700 219 V 219 (251)
T ss_pred H
Confidence 4
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.9 Score=45.77 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+...+..+...|++++|++.|+.+...-+.. ... .-.++.+|.+.+++++|...|++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344555566777777777777776643222 222 234456667777777777777777664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=45.73 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=45.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 298 (850)
.+.|++++|++.|+.+....+ -+..++..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 456888888888888877532 36677778888888888888888888887765 45544444443
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=48.50 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 416 (850)
.|+++.|..+|+.+.+.... .++...+-.+..+|.+.|++++|..+++. ...+.. +....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 57899999999999874210 11344555588889999999999999988 322222 33444455788899999999
Q ss_pred HHHHHHH
Q 003082 417 AMHLFEE 423 (850)
Q Consensus 417 A~~l~~~ 423 (850)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.21 Score=56.18 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.+...|.++.-.....|++++|...|++... +.|+...|..+...+...|+.++|...+++....+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666665555556777777777777776 45677777777777777777777777777776653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.089 Score=49.83 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..+..++..+...|++++|+..|+........+ ...+|..+..+|...|++++|+..++...+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556778888888999999999999987653332 2357888889999999999999999887754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.066 Score=49.34 Aligned_cols=124 Identities=14% Similarity=0.050 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC---CCCCCc-ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL-DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
+..++..+......|+.+.++..+++++..- +-++.. ..|..-.+. .++.. ...+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~------------~l~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE------------RLREL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH------------HHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH------------HHHHH--HHHHHHHHHHH
Confidence 4444444545556788888888888877542 111111 112211111 11100 00345567888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t 293 (850)
+...|++++|+.+...+....+ -|...|..+|.+|...|+..+|+++|+.+.+ .|+.|+..+
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 8899999999999999998642 4888999999999999999999999998763 355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.16 Score=48.34 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
....+..+...+...|++++|...|++..+.... .+ ....|..+...+.+.|++++|...+.+..+.... +...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 3456777888888999999999999988763211 11 1457888888899999999999999999876432 56667
Q ss_pred HHHHHHHHHcCC
Q 003082 402 SSLINACANAGL 413 (850)
Q Consensus 402 ~~li~~~~~~g~ 413 (850)
..+...+...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 777777777766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.018 Score=44.36 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=40.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...|++++|+..|++++ ...|+. .+++...+..+..+|++++|+..|+++++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l--~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQAL--KQDPDN------PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHH--CCSTTH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHH--HHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3457788888888888888 445654 5566666677778888888888888877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.13 Score=55.09 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=56.4
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
.+|+. ...+..++.+|.+.|+|++|+..|++.++. +|+....- ..+.+....|...|+.++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~---~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQ---AAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666 889999999999999999999999999999 55543221 11233344566899999999999999964
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.35 Score=46.77 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
....|...+..+..+.+++.|...+.++.+-.. +.+-|. ....+++|..+.+++.+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------------AAKayEqaamLake~~k------- 86 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------------AAKAYEQAAMLAKELSK------- 86 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHH-------
Confidence 478888899999999999999998888775431 211111 11233333333333331
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC--CCCCCCcccHH-HHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF--RLPVKELDEEF-RIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
.+...+.+-.++..|.++|..+-|...+++..+. +..|+.....+ .-+......++.++|.+++ .
T Consensus 87 --lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~----------g 154 (308)
T KOG1585|consen 87 --LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY----------G 154 (308)
T ss_pred --hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH----------H
Confidence 1122334444444455555555554444433211 11122211111 1111122222333333322 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSL 297 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~l 297 (850)
.+...+.+..++.+|-..|..-.. ..-.++. ..|-..|-.|....++..|...|+.--+.+ -.-|..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 334455555666655544432211 1111222 234455555566667777777777644332 12345666666
Q ss_pred HHhhc-CChHHHHHH
Q 003082 298 MNVNA-HDLKFTLEV 311 (850)
Q Consensus 298 l~~~~-~~~~~a~~l 311 (850)
|.+|- |+.+++..+
T Consensus 235 L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHhccCCHHHHHHH
Confidence 66653 465554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.057 Score=54.82 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...|......+.+.|+|++|+..|+.+++..++ ......... .+...|...|++++|+..|+++.+ ..|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y---~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANY---WLGQLNYNKGKKDDAAYYFASVVK--NYPKSP- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHH--HCCCCc-
Confidence 455655555557789999999999999998543 211111112 223345689999999999999994 356532
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
...+++..++..+...|++++|...|+.+++..
T Consensus 215 --~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 --KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred --chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 335667777777888999999999999988765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.2 Score=43.94 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC------HHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN------IYVFN 295 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~ 295 (850)
.+.+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++.... .|+ ...|-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 44566667777888888888888777765443 234556667777778888888888777654 122 22233
Q ss_pred HHHHhhcCChHHHHHHHHHHH
Q 003082 296 SLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 296 ~ll~~~~~~~~~a~~l~~~m~ 316 (850)
.+.-...|+.++|++.+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333334456666665554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.041 Score=55.86 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=44.2
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHcCCChHHHHHHhhhC----CCC---cchHHHHHHHHHhcC
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKR 235 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~---~~~~~~li~~~~~~g 235 (850)
.+.|++++|+..|+.+++.. |++. ..++.++..|...|++++|+..|+.+ |.+ ..++..++..|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 45688888888888887754 5542 24444555555555555555544332 222 233333444444555
Q ss_pred ChHHHHHHHHHHHh
Q 003082 236 DLVSALRAYDASKK 249 (850)
Q Consensus 236 ~~~~A~~~~~~m~~ 249 (850)
++++|..+|+.+++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.024 Score=45.60 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHh
Q 003082 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (850)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (850)
...+..+...+...|++++|+..|+++++. .......++.+..++.+++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566777999999999999999865 2111112444567788888888899999999999987654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.6 Score=44.29 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHH
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR 242 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~ 242 (850)
..-...|+..-|..+++. .|. ...-+..+...|+.+.|+.-.-...+.+.+|..|+..-.+... . +
T Consensus 8 ~~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~-s---~ 73 (319)
T PF04840_consen 8 RKAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSL-S---Q 73 (319)
T ss_pred HHHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCH-H---H
Confidence 334467999888887762 132 2345667788888888876554445555677777665544431 1 2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 243 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
+| .++.. .|.. ..+...|++..+.+.-..+|.
T Consensus 74 f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~ 105 (319)
T PF04840_consen 74 FF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYY 105 (319)
T ss_pred HH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHH
Confidence 33 33332 1331 234445666666666555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.15 Score=57.33 Aligned_cols=130 Identities=10% Similarity=-0.014 Sum_probs=77.4
Q ss_pred chhhhHHHHHHHHhhhhc---CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC--------CChHHHHHHhhh---
Q 003082 151 DGSGFKLLKNECQRLLDS---GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK--------PDVNLAIRYACI--- 216 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~--- 216 (850)
...+++.++..-. +.+. +...+|+.+|++.++.. |+....+..++.++... .+...+.+....
T Consensus 336 ~~~Ay~~~lrg~~-~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 336 QGAALTLFYQAHH-YLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455666665533 2233 34778889999888765 77665555544433221 112233333322
Q ss_pred ---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 217 ---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 217 ---~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.+.+..++..+.-.+...|++++|...|++.+... |+...|..+...+...|+.++|.+.|++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22333555556555556677777777777777643 56667777777777777777777777776654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.21 Score=47.29 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...|..+...+...|++++|...|+....... . ......+|..+...|...|++++|...++....... ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-D-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 45667777777888999999999988876310 0 001234778888888999999999999988886532 23455666
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH
Q 003082 404 LINACA-------NAGLVEQAMHLFEEM 424 (850)
Q Consensus 404 li~~~~-------~~g~~~~A~~l~~~m 424 (850)
+...+. ..|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 677777666665544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.072 Score=52.29 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred CcCHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (850)
Q Consensus 512 ~p~~~t~~~li~~~~~-------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 584 (850)
+.|-.+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.||+.+-|..- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3344555555554431 234445555566666666666666666655443221 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~ 634 (850)
|-.+.--|= .+-.-+++++++|...|+.||..+-..|++++.+.|-.
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111111 23456889999999999999999999999999888763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.18 Score=50.75 Aligned_cols=108 Identities=8% Similarity=-0.066 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC---ChHHHHHHHHHH
Q 003082 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR---DLVSALRAYDAS 247 (850)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g---~~~~A~~~~~~m 247 (850)
+.-++.-+..+ |.+...|.-++..|...|+.+.|+..|.. .|++...+..+..++..+. ...++..+|+++
T Consensus 142 ~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33344333433 88888888888888888888888877654 4777777666665555443 456788888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 248 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+..+. -|+.+...|...+...|++.+|...++.|.+.
T Consensus 220 l~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 220 LALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 87532 46666777777788888888888888888875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.033 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 375 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+.|++++|..+|+++...... +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555544322 4445555555555555555555555555543
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.15 Score=53.31 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYM-KSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 284 (850)
-+.+.-..+|...|+++.|+..|..+++. .| |-.+-+-|+.+--+...+. ...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555666666666666666653 34 3333444444333333332 33556666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.035 Score=43.34 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 284 (850)
.+|..++..+...|++++|+..|++.++..+ .+...|..+..+|.+.| ++++|++.|+...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5677888888888999999999988888642 36667888888888888 68888888887664
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.28 Score=45.11 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~ 436 (850)
....++..+...|++++|..+...+.....- |...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666677889999999999998876533 788899999999999999999999888754 4888887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.3 Score=43.28 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~---------------~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|..++..+|.++++.|+++....+++..-. ..+.|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445777788888888888877777765421 12456777777777777777777777777777665
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCC
Q 003082 612 -YQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 612 -~g~~p~~~t~~~li~a~~~~g~ 633 (850)
.++.-+..+|..|+.=+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5676677777777765544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.31 Score=50.54 Aligned_cols=286 Identities=15% Similarity=0.058 Sum_probs=162.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHcCCChHHHHHHhhh-------CCC---CcchHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACI-------VPR---ADILFCNF 227 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~-------~p~---~~~~~~~l 227 (850)
..++++.|++...+.+|+..++.| .++. ..|..++.+|--.++|.+|++|+.. +.+ ...+.-+|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456778899999999999999887 3332 2344566777777788888887533 111 11223345
Q ss_pred HHHHHhcCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 228 VREFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+.+--.|.|++|+-...+-+ +.|-. -....+-.|...|...|+--.... -.+.|-.++.++ .
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-~------- 169 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-S------- 169 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-H-------
Confidence 666666677777765433221 11111 122344445555554443110000 000011111111 0
Q ss_pred CChHHHHHHHHH----HHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc-CCcccCHhHHHHHHHHHHhc
Q 003082 303 HDLKFTLEVYKN----MQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 303 ~~~~~a~~l~~~----m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~-g~~~~d~~ty~~li~~~~~~ 376 (850)
.++.|.+.|.+ +.+.|- -.-...|..|-+.|.-.|+++.|....+.-...... |--......++.+-+++.-.
T Consensus 170 -al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 -ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 12223333322 122220 012345777777788889999998776544332211 11112345788888999999
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHh
Q 003082 377 KWWQMALKVKEDMLS----AGV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 377 g~~~~A~~l~~~m~~----~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~ 446 (850)
|+++.|.+.|+.-.. .|- .....+.-+|.+.|.-..+++.|+.++..-+.- ...-....|-+|-.+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999988876542 221 113345667788888788889998888654321 1233456778889999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 003082 447 CQFDRAFRLFRSWTLS 462 (850)
Q Consensus 447 g~~~~A~~l~~~m~~~ 462 (850)
|..++|+...+.-...
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999998887655443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.5 Score=42.83 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+...|++.+|+..|+.+.... |.+... ..+...++.++.+.|++
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a---------------------------~~A~l~la~a~y~~~~y 58 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYA---------------------------PQAQLMLAYAYYKQGDY 58 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTH---------------------------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHH---------------------------HHHHHHHHHHHHHcCCH
Confidence 4444555667889999999988887654 433221 14455678888888999
Q ss_pred HHHHHHHHHHHhCC
Q 003082 238 VSALRAYDASKKHL 251 (850)
Q Consensus 238 ~~A~~~~~~m~~~g 251 (850)
+.|...|++.++.-
T Consensus 59 ~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 59 EEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998887753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=6.1 Score=44.84 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=94.4
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 309 LEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 309 ~~l~~~m~~-~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
+.+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.+++..++|++-+++-.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 344444432 3434445566666777788899999998877664 4788888888999999999999888776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
.++ .+.-|.-.+.+|.+.|+.++|.+.+.... +.. -.+.+|.+.|++.+|.++--
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 654 35568888999999999999999987653 111 56789999999999887653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.9 Score=42.29 Aligned_cols=174 Identities=11% Similarity=-0.012 Sum_probs=88.3
Q ss_pred hhcCChHHHHHHHHHHHHhc--CChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHc----C-CCCccccchh
Q 003082 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL----G-VAPLELFDGS 153 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~----~-~~p~~~~~~~ 153 (850)
.+.|+++-|..++.++.... .+|.... .+....+..+. .....+ ++++|...++++.+. + ..........
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~-~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE-ELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH-HHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 35799999999999987653 3444433 23233333333 444666 999999999988754 1 1111110000
Q ss_pred -hhHHHHHHHHhhhhcCcH---HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 154 -GFKLLKNECQRLLDSGEV---EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 154 -~~~~l~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
-+.++..+...+...+.. ++|..+++.+... .|+....+..-+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--------------------------------~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE--------------------------------YGNKPEVFLLKLE 129 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--------------------------------CCCCcHHHHHHHH
Confidence 011111122222222222 2223333332211 2333344545566
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC---GICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+.+.++.+.+.+++.+|+..-. -....+..++..+ ... ....|...++.+....+.|..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 66668888999999999887522 1223344444433 333 334566666666554444443
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.39 Score=44.03 Aligned_cols=86 Identities=12% Similarity=-0.047 Sum_probs=67.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+-.+|++++|..+|.-+.- ..|.. .+.+..++..+-..+++++|+..|....... ++++..++..+..+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~--~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~ 115 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI--YDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHH
Confidence 34589999999999999884 45544 3334445445556799999999998876554 67888899999999
Q ss_pred HcCCChHHHHHHhhhC
Q 003082 202 VNKPDVNLAIRYACIV 217 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~ 217 (850)
...|+...|...|..+
T Consensus 116 l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 116 LLMRKAAKARQCFELV 131 (165)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999999999988765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=7.4 Score=44.80 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=119.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (850)
..-+..+.+...|+.|+.+.+.- +.+++.. ..+. ......+-..|++++|...|-+.+. -+.|+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~-~~i~----~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~s~------ 402 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTL-AEIH----RKYGDYLYGKGDFDEATDQYIETIG-FLEPSE------ 402 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHH-HHHH----HHHHHHHHhcCCHHHHHHHHHHHcc-cCChHH------
Confidence 35567788889999998886543 2233321 1111 1111223478999999999988873 234432
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFG 232 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~--~~~li~~~~ 232 (850)
.+..+.+..+..+-..+++.+.+.++. .......|+..|.+.++.+.-.++.+..+..... ....+..+.
T Consensus 403 ------Vi~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr 474 (933)
T KOG2114|consen 403 ------VIKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILR 474 (933)
T ss_pred ------HHHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHH
Confidence 234455667777888889999988844 3445667889999999999998888887744433 445677788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
+.+-.++|..+-.... .+......++. ..|++++|++.+..|.
T Consensus 475 ~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 8888888876544332 24555555554 6788999999998764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.26 E-value=5 Score=42.66 Aligned_cols=93 Identities=8% Similarity=0.045 Sum_probs=61.0
Q ss_pred cchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHH
Q 003082 57 TALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (850)
Q Consensus 57 ~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 136 (850)
+-+-+.++.+|+. +..|-.|+..|..+|.+++-.+.|+++...-+-..+ . +..+ +++=+...++..+..+|
T Consensus 29 lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~---a--w~ly---~s~ELA~~df~svE~lf 99 (660)
T COG5107 29 LRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH---A--WRLY---MSGELARKDFRSVESLF 99 (660)
T ss_pred HHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH---H--HHHH---hcchhhhhhHHHHHHHH
Confidence 3455578888888 888889999999999999999999999865321111 1 1111 11222447788888888
Q ss_pred HHHHHcCCCCccccchhhhHHHHHHHHh
Q 003082 137 KKLNELGVAPLELFDGSGFKLLKNECQR 164 (850)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (850)
.+.+...+..| +..+++...++
T Consensus 100 ~rCL~k~l~ld------LW~lYl~YIRr 121 (660)
T COG5107 100 GRCLKKSLNLD------LWMLYLEYIRR 121 (660)
T ss_pred HHHHhhhccHh------HHHHHHHHHHh
Confidence 88876544432 34555544443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.089 Score=41.00 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSK-RLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~m~~ 611 (850)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677888888888888888888888888753 335667888888888888 68888888887764
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.13 Score=40.64 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...|.+.+++++|+++++.++..++ .+...|.....++.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3567888899999999998888643 36667778888888899999999999888866
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.8 Score=39.00 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH
Q 003082 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNT 398 (850)
Q Consensus 320 ~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 398 (850)
+.|++..--.|..++.+.|+..+|...|++.. .|.+..|....-.+.++....++..+|...++++.+.... -+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 35677777788999999999999999999877 4767788888888888899999999999999998876421 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 399 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+.-.+.+.+...|...+|..-|+..... -|+...-...-..+.+.|+.+++..-+..
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34556778899999999999999999875 45554433344456688887777654443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.04 E-value=5.4 Score=41.88 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.+..|.-+...|+...|.++-.+.+ -||..-|-..+.+|+..++|++-.++-.. +-++.-|-.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepF 243 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPF 243 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHH
Confidence 455666777788899999988876653 37888999999999999999988876432 2245789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+.+|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-.+
T Consensus 244 v~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999888772 235567888999999999876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.6 Score=42.65 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCC---CCC
Q 003082 515 TTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDG---MSP 581 (850)
Q Consensus 515 ~~t~~~li~~~~~~----~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~l~~~m~~~g---~~p 581 (850)
..++.+++.....+ .++...+++.|.+.|+.-+..+|-+..-.... .. ....|..+++.|++.. -.+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 45555555555443 46778899999999999888887663333322 22 3667999999999853 134
Q ss_pred CHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 003082 582 DVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (850)
Q Consensus 582 d~~ty~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~ 656 (850)
+...+..++.. ..++ .+.+..+|+.+.+.|+.. |..-+.+-+-+++.....+.+.++.++++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 56677777655 3333 456788899999988876 4546666666666665555688999999999999999887
Q ss_pred HHHHHH
Q 003082 657 TYLKEL 662 (850)
Q Consensus 657 ~~~~~l 662 (850)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 776543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=5.2 Score=44.41 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.-.+..-+.+...+..|.++|..|-.+ ..++......++|++|+.+-+..-+ ..||+ |---
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~py 810 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPY 810 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchH
Confidence 34434444444555666777777766431 2355566677777777777665433 22332 3333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
.+.++...++++|. .+|.+.|+..+|.++++++..
T Consensus 811 aqwLAE~DrFeEAq----------------------kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQ----------------------KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhhhhhHHHHH----------------------HHHHHhcchHHHHHHHHHhhh
Confidence 34444444444443 356677888888888887754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.46 Score=50.99 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=57.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.....++++..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|++++|++.|+...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555888999999999999999999999988854 542 46999999999999999999999998875
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.55 Score=46.39 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=49.4
Q ss_pred cccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 003082 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD 582 (850)
Q Consensus 503 ~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 582 (850)
+..|+.+|+..|..+|+.||+.+-+ ..+.|....-...+ -|-+ +-+-+.+++++|...|+.||
T Consensus 95 Lk~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPd 157 (406)
T KOG3941|consen 95 LKYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPD 157 (406)
T ss_pred HHHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCch--hhhHHHHHHHHHHHcCCCCc
Confidence 3456777888888888887776543 22233222222122 1222 12346778888888888888
Q ss_pred HHHHHHHHHHHHHcCCH
Q 003082 583 VVAYTTAIKVCVRSKRL 599 (850)
Q Consensus 583 ~~ty~~li~~~~~~g~~ 599 (850)
-.+-..|+++|.+.|..
T Consensus 158 kE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 158 KEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHhcccccc
Confidence 88888888888777653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.55 Score=41.59 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003082 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (850)
Q Consensus 582 d~~ty~~li~~~~~~g~~~~A~~l~~~m~---------------~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~ 646 (850)
|..++.++|-++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 56789999999999999999999987652 12356999999999999999999877 6666666
Q ss_pred HHH-cCCCCCHHHHHHHHHHH
Q 003082 647 MWK-AGYKANDTYLKELIEEW 666 (850)
Q Consensus 647 M~~-~g~~p~~~~~~~li~~~ 666 (850)
..+ .++..+..+|..|++..
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHH
Confidence 665 67888899999998753
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=40.62 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=43.6
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.|.+++++++|++.+++++ .+.|+. ...+...+..+...|++++|.+.++..++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l--~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERAL--ELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHH--HhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3558899999999999998 557764 4455666677778899999999999888765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=1 Score=41.20 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=75.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc---chH---HH--HHHHHHhcC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD---ILF---CN--FVREFGKKR 235 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~---~~~---~~--li~~~~~~g 235 (850)
.+++.+..++|+..|..+.+-|...-........+....+.|+-..|+.+|..+..+. ... .. -.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 4556788899999999998776543333344445556677788888887776642211 111 11 233445667
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.|++.....+.+...+-+.-...-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777766666554443333444556666666777777777777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.7 Score=47.87 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
-++-+-+--++++.+.|..|... +.... ++-+|++.+|..+|.+
T Consensus 614 l~~L~li~EL~~~k~rge~P~~i---LlA~~-------~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 LRYLELISELEERKKRGETPNDL---LLADV-------FAYQGKFHEAAKLFKR 657 (1081)
T ss_pred cHHHHHHHHHHHHHhcCCCchHH---HHHHH-------HHhhhhHHHHHHHHHH
Confidence 34444555566666666556632 21222 2245777777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.4 Score=47.66 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=59.7
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
.+.+..+...|++.+|...|...++.. |++..+. .+++=|+..+..+|+++
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~---------------------------nA~yWLGe~~y~qg~y~ 195 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTP---------------------------NAYYWLGESLYAQGDYE 195 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccc---------------------------hhHHHHHHHHHhcccch
Confidence 344445556788888888888877765 5543222 34444666666677777
Q ss_pred HHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 239 SALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+|..+|..+.+.-+. | -...+--|.....+.|+.++|...|+++.+.
T Consensus 196 ~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 196 DAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777776666654221 1 2245555556666667777777777776655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.6 Score=47.11 Aligned_cols=124 Identities=11% Similarity=-0.108 Sum_probs=70.1
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHh----h-h---hcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR----L-L---DSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~-~---~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
+....-.|+-+.+++.+.+..+.+ +. ...+-.+.+-.... + . .....+.|.++++.+.+.- |++.
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~---~i--~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSE---NI--RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccC---Cc--chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 444456799999999999887532 11 01111111111111 1 1 2456677888888887654 6665
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhCCC--------CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIVPR--------ADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~p~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.-...-++.+...|++++|++.|+..-. ....+..++-.+.-.++|++|...|..+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 5555556666677777777777664211 1133444555566666666666666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.91 Score=40.68 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+....+.|++++|++.|+.+...- |-+..+ ..+...|+.+|.+.+++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya---------------------------~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYA---------------------------EQAQLDLAYAYYKQGDY 63 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCccc---------------------------HHHHHHHHHHHHHccCH
Confidence 3444455567899999999999887654 433211 24555789999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
++|+..+++.++..+.....-|-..+.+++..
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 99999999999876543334455555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.82 E-value=7.5 Score=38.40 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=101.7
Q ss_pred HHHHHHHhhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH
Q 003082 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (850)
Q Consensus 293 t~~~ll~~~~~--~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li 370 (850)
+-+.++.+..| .+.-...+++++++...+.++.....|.+.-.+.|+.+.|...|+.+.+. .+ +.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~--~~--kL~~~q~~~~V 254 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV--TQ--KLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--Hh--hhhccchhHHH
Confidence 34455555554 45556788899988877788899999999999999999999999987752 22 34555555444
Q ss_pred H-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 371 K-----VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (850)
Q Consensus 371 ~-----~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll 440 (850)
. .|.-.+++.+|...+.++...+.. |....|.=.-+..-.|+..+|++.++.|.+. .|...+-++++
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3 355678899999999888876543 6666666555556678999999999999885 45555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.3 Score=39.66 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
...+-.-+....+.|+|++|+..|+.+....+... + . -..-..++-++.++|++++|+..+++.+ .+.|.+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y-a---~qAqL~l~yayy~~~~y~~A~a~~~rFi--rLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y-A---EQAQLDLAYAYYKQGDYEEAIAAYDRFI--RLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c-c---HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCC
Confidence 44555667788889999999999999998843211 1 1 1111234456779999999999999999 5577654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.5 Score=42.71 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--h----CCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhc
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (850)
+++.+.+++.|.+.|+.-+..+|-+..-.... . ....+|..+|+.|++...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 45667777888888888777666553322222 1 23456777777777653211
Q ss_pred ccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhcc----HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCC
Q 003082 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSG 562 (850)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~----~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g 562 (850)
..++...+..++..-..+ .+.++.+|+.+.+.|+..+.. -+.+-|-+++...
T Consensus 137 -----------------------Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 137 -----------------------TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred -----------------------cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 145556666665554332 356666677777766665322 2222222222221
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 563 ---NVEGALQILKIMREDGMSPDVVAYTTAI 590 (850)
Q Consensus 563 ---~~~~A~~l~~~m~~~g~~pd~~ty~~li 590 (850)
.+..+..+++.+.+.|+++....|..+.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 1345666666666666666666555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.82 Score=45.54 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccch
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (850)
.|. .+-.+.+.|+|.+|...|..+++.+++-. +.. .....|+ ..+..+|++++|...|..+.+. .|+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~-nA~yWLG---e~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKKYPNST-YTP-NAYYWLG---ESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccc-hhHHHHH---HHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 554 45556777889999999999999864311 111 1112222 2445899999999999999864 45432
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
-+-+.+++++..+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 235778999999999999999999999998764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.7 Score=40.96 Aligned_cols=201 Identities=14% Similarity=0.049 Sum_probs=95.1
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHH
Q 003082 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (850)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (850)
+.....+|-...+++.|...+.++.+. .+-+. .+..++ ..++.|.-+.+++.... .....+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnr--------slfhAA------KayEqaamLake~~kls---Evvdl~e 95 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR--------SLFHAA------KAYEQAAMLAKELSKLS---EVVDLYE 95 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc--------cHHHHH------HHHHHHHHHHHHHHHhH---HHHHHHH
Confidence 333344455668888888888777742 11111 122222 33455555555554432 2222333
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 003082 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS--SPNMYICRTIIDVCGICG 270 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g 270 (850)
.....|.+.|.++-|--.+++. .-....-++++|+++|.+...- +- ..-...+..+-+.+.+..
T Consensus 96 KAs~lY~E~GspdtAAmaleKA-----------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKA-----------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHH-----------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 4445566666665443333221 0112234566666666654331 10 011223445555566666
Q ss_pred CHHHHHHHHHHHHhC----CCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCh
Q 003082 271 DYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLAGNT 340 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~----g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~~g---~~pd~~t~~~Ll~~~~~~g~~ 340 (850)
++.+|-..|..-... .-.++. +.-.+|+..+.+++..|...++.--+.+ -.-+..+...||.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666665544332211 011222 2222333345567777777776643322 223455666666666 44666
Q ss_pred HHHHHH
Q 003082 341 VLAQEI 346 (850)
Q Consensus 341 ~~A~~i 346 (850)
+++..+
T Consensus 244 E~~~kv 249 (308)
T KOG1585|consen 244 EEIKKV 249 (308)
T ss_pred HHHHHH
Confidence 555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.8 Score=37.70 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCH
Q 003082 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR---TIIDVCGICGDY 272 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~ 272 (850)
+..+.|+.+.|++.|.+ .|....+|++-..++.-+|+.++|+.=+++.++..-..+...+. .-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555433 46777888888888888899999988888877652222222233 333457788888
Q ss_pred HHHHHHHHHHHhCC
Q 003082 273 MKSRAIYEDLRSQN 286 (850)
Q Consensus 273 ~~A~~~~~~m~~~g 286 (850)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.3 Score=46.87 Aligned_cols=157 Identities=9% Similarity=0.084 Sum_probs=94.5
Q ss_pred HHhhcCChHHHHHHHHHHH-HhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 80 KLAKDGRLEEFAMIVESVV-VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
...-.|+++++..+.+.-. -..++ -.....+++.+-++|..+.|+++-..-... +++-
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~---------~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLA 328 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP---------KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELA 328 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC---------hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHH
Confidence 3455688888776664111 11111 122334445556788898888874332211 3333
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
+ +.|+.+.|.+..+. .++...|..|+.....+|+.+.|+..|.+.. -+..|.-.|.-.|+.+
T Consensus 329 l-------~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 329 L-------QLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp H-------HCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-HH
T ss_pred H-------hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHHhCCHH
Confidence 3 67999988886543 3455679999999999999999999998774 3667778888889888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
.-.++-+.....|. +|....++...|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 87777777666542 44445555567888888777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.4 Score=39.52 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=54.3
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFN 295 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~ 295 (850)
-|+-+.+||-|+--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+... .|-...|-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 36666888888888888999999999999888865544444445544433 56888888877776665432 24444444
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
-+.
T Consensus 174 Yl~ 176 (297)
T COG4785 174 YLN 176 (297)
T ss_pred HHH
Confidence 444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.2 Score=47.73 Aligned_cols=168 Identities=14% Similarity=-0.036 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhh----cCchhHHHHHHHHHHHcCCCCcc
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
....+++...=.|+-+..++++....+.+ +....-..+.+-.+..++..++. ....+.|.++++.+. ..-|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~--~~yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEML--KRYPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHH--HhCCCc
Confidence 35567777777899999999999887743 32322222223333444443333 456788999999998 447765
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHh--CCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC---cch
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DIL 223 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~---~~~ 223 (850)
. =.+...++.+...|+.++|++.|+.... ...+.-....++.++-.+.-..++++|..+|..+-.. ..+
T Consensus 267 ~------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 267 A------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred H------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 2 2344456667778999999999997653 2222223445566778888899999999998876332 222
Q ss_pred HH--HHHHHHHhcCCh-------HHHHHHHHHHHh
Q 003082 224 FC--NFVREFGKKRDL-------VSALRAYDASKK 249 (850)
Q Consensus 224 ~~--~li~~~~~~g~~-------~~A~~~~~~m~~ 249 (850)
++ ..+..+...|+. ++|.++|.+...
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 235555566776 777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.87 E-value=3.1 Score=42.90 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=58.3
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C-CC------cchHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P-RA------DILFCNFV 228 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p-~~------~~~~~~li 228 (850)
..+.++++++.|+......-..++ ...+-.++..|.+..++++|+-+...+ . ++ ..+.+.+.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 346666777776665543322222 223344566666666666665554332 0 00 02233455
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 229 REFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
-++...|+..+|.+.-++..+. |-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 5666666666666666554332 2222 1223344556666666666666666553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.59 E-value=8.5 Score=35.55 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=88.1
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH--HHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI--VQL 200 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~ 200 (850)
..+.|+.++|+..|..+.+.|... ++. -..........+.|+..+|+..|.++-.-...|...-....+ +-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~----Ypv--LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS----YPV--LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc----chH--HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 347899999999999999776443 222 234555677788999999999999987654333222122222 334
Q ss_pred HHcCCChHHHHHHhhhCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003082 201 CVNKPDVNLAIRYACIVPRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 254 (850)
++..|.|+......+.+..+. ..-..|.-+-.+.|++..|.+.|+.+......|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 567899998887776653322 334468888889999999999999998754444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.58 E-value=17 Score=38.85 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
.+..+++-.|....+|+..+++++.+.... +.-...+-....-++-+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 444566677999999999999999987641 11122222233444556 788999999988866554455555555
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
.+-
T Consensus 222 L~G 224 (374)
T PF13281_consen 222 LLG 224 (374)
T ss_pred HHH
Confidence 443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.47 E-value=9 Score=39.66 Aligned_cols=160 Identities=8% Similarity=-0.044 Sum_probs=82.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
+-.+....+++.|+....+.+..- .+ ..-.+..+++...+..++|.+++++..--..+.....-+. ....+++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l--~~---~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d--s~~~~ea 85 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKL--SD---LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED--SDFLLEA 85 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHH--HH---HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344556677777777666665541 11 1222455666666777888888776543222211111110 1122556
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCC--CCcccHHHHHHHHHcCCChHHHHHHhhhC------CCCc----chH
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPV--KELDEEFRIVQLCVNKPDVNLAIRYACIV------PRAD----ILF 224 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------p~~~----~~~ 224 (850)
++++...+-+.-++.+++.+-..-+... ..+ +.......++.++...+.++.++++|+.+ ..+. .++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 6666665545555556665555443221 111 11223344566666666677777666553 1111 455
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 003082 225 CNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~ 244 (850)
..|...|.+..++++|.-+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhh
Confidence 66667777777766665443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=12 Score=37.09 Aligned_cols=187 Identities=9% Similarity=0.035 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...| .-+....+.|++++|...|+.+.... |.+... -......+-++-+.+++++|+...++-++ ..|....
T Consensus 35 ~~LY-~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~---~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n 106 (254)
T COG4105 35 SELY-NEGLTELQKGNYEEAIKYFEALDSRH--PFSPYS---EQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPN 106 (254)
T ss_pred HHHH-HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCC
Confidence 3444 44555678899999999999999773 332111 11122233355699999999999999884 4554421
Q ss_pred chhhhHHHHHHHHhhh-------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 003082 151 DGSGFKLLKNECQRLL-------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~ 223 (850)
.-+-.++.....+. ++....+|+.-|+.+++.- |++........+. ..+. +..+
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i-----------~~~~----d~LA 167 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARI-----------VKLN----DALA 167 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHH-----------HHHH----HHHH
Confidence 12444554443331 2223345555566665543 5543333221111 0000 0011
Q ss_pred HH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 224 FC--NFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 224 ~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.. .+...|.+.|.+-.|..-|++|++. .+-+ ...+-.+..+|-..|-.++|...-.-+...
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 11 4678899999999999999999986 3222 235666777888888888887776665544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.41 E-value=3.4 Score=41.69 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=67.6
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc--chHH---HHHHHHHhcCCh
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--ILFC---NFVREFGKKRDL 237 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~--~~~~---~li~~~~~~g~~ 237 (850)
..+...|++.+|...|....+.. +.+......++..|...|+.+.|..++..+|.+. ..+. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34445677777777776666554 4555555666667777777777777776666543 1111 223444444444
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 238 VSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.+...+-.+.-.. | |...-..+...+...|+.++|++.+-.+.+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444332 4 555666667777777777777776655544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.34 E-value=6.5 Score=35.62 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
..++..+...+........++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555555555555554432 3444555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.3 Score=43.91 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=48.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---IYV 293 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t 293 (850)
|.+..+...++.++.-.++++.|..+|++.... .|| ..+|......+.-+|+.++|.+.+++..+. .|. ...
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~ 410 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVV 410 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHH
Confidence 444455555555556666677777777766653 233 223444444445567777777776664443 222 222
Q ss_pred HHHHHHhhc-CChHHHHHHHHH
Q 003082 294 FNSLMNVNA-HDLKFTLEVYKN 314 (850)
Q Consensus 294 ~~~ll~~~~-~~~~~a~~l~~~ 314 (850)
..-.+..|. ..++.|+++|-+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhh
Confidence 222232333 356666666544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=19 Score=37.84 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=161.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHc
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 203 (850)
-.|+-..|..+-.+..+. +..|.. . +--++.+-. -.-.|++++|.+-|+.|+.. |.. ......+--.-.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqe---p-LIhlLeAQa-al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr 166 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQE---P-LIHLLEAQA-ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQR 166 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccch---H-HHHHHHHHH-HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHh
Confidence 447777777766555421 111110 1 111222211 12358888888888888754 221 1111122222345
Q ss_pred CCChHHHHHHhh----hCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHh---cCCHH
Q 003082 204 KPDVNLAIRYAC----IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMY--ICRTIIDVCGI---CGDYM 273 (850)
Q Consensus 204 ~~~~~~A~~~~~----~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~ 273 (850)
.|..+.|.+|.+ ..|.-......++...|..|+|+.|+++.+.-.... +.+++. .-..|+.+-.. ..+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 777777777654 457777788888999999999999999988765542 334443 23334332211 23455
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
.|...-.+..+. .||..- ..++.+ ..+++.++-.+++.+-+....|+.. ++-.+.+.|+ .+..-++.
T Consensus 247 ~Ar~~A~~a~KL--~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 247 SARDDALEANKL--APDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKR 317 (531)
T ss_pred HHHHHHHHHhhc--CCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHH
Confidence 555555444432 444322 222222 3467888888999888876555532 2223445554 34444444
Q ss_pred HHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 003082 350 VKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 350 m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~m~~~ 427 (850)
.+++.+ ++| +..+--++..+-...|++..|..--+...+ ..|....|-.|.+.-.- .|+-+++...+.+..+.
T Consensus 318 a~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 334 455666677778888888888776666654 36778888888776544 48999999988888765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.9 Score=45.33 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=68.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+.+|.-.|.+.+++..|+...+..+..+. +|+-..-.-..+|...|+++.|+..|+.+.+. .|+...-+.=|..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 5577889999999999999999999888643 67888778888999999999999999998875 66655444444333
Q ss_pred cC----ChHHHHHHHHHHHH
Q 003082 302 AH----DLKFTLEVYKNMQK 317 (850)
Q Consensus 302 ~~----~~~~a~~l~~~m~~ 317 (850)
.. ..+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 22 22334566666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.69 E-value=11 Score=35.02 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=76.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~ 320 (850)
.+....+.+.+++|+...|..+++.+.+.|++.... ++...++-+|.......+-...+....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH--
Confidence 344556667788899999999999999999866544 44556667776665555544444333333333333221
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
=...+..++..+...|++-+|.++.+.... .+......++.+..+.++...-..+|+-..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001244566667777777777777655321 122233445555555555444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=28 Score=39.36 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 584 ~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
..|-.|..-....|.++.|++.--.+.+ ..+-|-...|..|.-+-|....+.-
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGT 1075 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhh
Confidence 3444444455667888888876555554 3466777778777666555444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.42 Score=33.22 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF 107 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~ 107 (850)
..+..++..|...|++++|+++|+++++. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 46778999999999999999999999999 55543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=17 Score=36.22 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
+.+.|.+.|.+..|..-+++|++. ..-+.. ..-.+..+|-..|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344566667777777667766665 221222 344455666777777777666555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=5 Score=40.99 Aligned_cols=149 Identities=10% Similarity=-0.120 Sum_probs=80.4
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH----HH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----VQ 199 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~ 199 (850)
.-.|+..+|...++++++. .|.+.. .....-.+|. ..|+.+.-...++++...- .++- -.+.++ .-
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~f---y~G~~~~~k~ai~kIip~w-n~dl-p~~sYv~GmyaF 183 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHF---YNGNQIGKKNAIEKIIPKW-NADL-PCYSYVHGMYAF 183 (491)
T ss_pred hccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHH---hccchhhhhhHHHHhcccc-CCCC-cHHHHHHHHHHh
Confidence 3568888888888888743 444321 1111122221 3577777777777776541 1322 223322 12
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HH--HHHHHHHHHhcCCH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YI--CRTIIDVCGICGDY 272 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~--~~~li~~~~~~g~~ 272 (850)
.+.+.|-+++|++..+.. +.+..+..++...+.-.|++.++.++...-...=-.... .+ |=...-.+...+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 234677888887766553 344455566777788888888888765432211000011 11 11222235556888
Q ss_pred HHHHHHHHHH
Q 003082 273 MKSRAIYEDL 282 (850)
Q Consensus 273 ~~A~~~~~~m 282 (850)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.15 E-value=22 Score=37.37 Aligned_cols=284 Identities=12% Similarity=0.044 Sum_probs=181.7
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHH--HHHHHcCCChHHHHHHhhhCCCCcchHH----HHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI--VQLCVNKPDVNLAIRYACIVPRADILFC----NFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~p~~~~~~~----~li~~~~~~g~~~~A~ 241 (850)
.|+-..|.++-.+-.+. + ..+......+ .++-.-.|+++.|.+-|+-+-.++.+-. -|.-.-.+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-l-ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-L-SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-h-hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 47777777766554321 1 1122222222 3444568999999999998866664432 2444445789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCH--HHHHHHHHhhcC-----ChHHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNI--YVFNSLMNVNAH-----DLKFTLEVYK 313 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~t~~~ll~~~~~-----~~~~a~~l~~ 313 (850)
+.-+.....- +.-.+.+...+...+..|+|+.|+++++.-+... +.+|. ..-..|+.+.+. +...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8888776532 1245788999999999999999999999877643 34554 344566665442 4445555544
Q ss_pred HHHHcCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 003082 314 NMQKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS- 391 (850)
Q Consensus 314 ~m~~~g~~pd~~t~-~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~- 391 (850)
+-.+ +.||.+-- -.-..++.+.|++.++-.+++.+=+ ..|-...+.. ..+.+.|+. +++-++....
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEPHPDIALL--YVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCCChHHHHH--HHHhcCCCc--HHHHHHHHHHH
Confidence 4443 34554322 2335778899999999999998865 2344433332 234556653 2222222211
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHhhccccccc
Q 003082 392 AGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-ACQFDRAFRLFRSWTLSKTQVAL 468 (850)
Q Consensus 392 ~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~~~~~~~ 468 (850)
..++| |..+--.+..+-...|++..|..--+.... ..|....|-.|.+.-.. .|+-.++...+.+-......+.+
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 11233 466777788888889999888776666654 47788888777776544 49999999999887776655554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=8.4 Score=41.76 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
.+|+...-...-.|+.++|.+.+++..+..+.. -.......++.|+.. .+++|+.+|-
T Consensus 373 ~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 373 SLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 444444445555666666666666655432211 112222333344433 3555655554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.7 Score=36.57 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=70.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCc----chHHHHHHHHHhcC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD----ILFCNFVREFGKKR 235 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~----~~~~~li~~~~~~g 235 (850)
.+++.|+.+.|++.|.+.+..- |..+..|++-.+++--+|+.++|+.-++.. .+.. .+|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567899999999999987654 778888999999999999999998866553 2222 45666788899999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 003082 236 DLVSALRAYDASKKHLS 252 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~ 252 (850)
+-+.|..=|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998887763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.90 E-value=28 Score=42.12 Aligned_cols=156 Identities=16% Similarity=0.073 Sum_probs=72.0
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+++..|+.....+. ...|...++.--+.|-|.+|+.+|..=.+ .-...|.+-.+.+...+.+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~--~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG--ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK 967 (1265)
T ss_pred HHHHHHHHHHHHcC--ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence 45555655544433 12344445555566666777665431110 1112333333334444555555555543221
Q ss_pred CCCCcCHHHHHHHHHh-hcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc
Q 003082 285 QNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~-~~~~~~~a~~l~~~m~~~g~~pd~~t--~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~ 361 (850)
. =-++-.. .++++++|+.+..+|.. ..|... --.|+.-+...++.-+|-++..+..+ .
T Consensus 968 l--------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-------d- 1028 (1265)
T KOG1920|consen 968 L--------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-------D- 1028 (1265)
T ss_pred H--------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-------C-
Confidence 0 0000000 23455555555555532 112221 13456666666776666666655432 1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 362 DVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 362 d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.-.+..||+...|++|.++...-
T Consensus 1029 ----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223344566666677776665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.45 Score=33.08 Aligned_cols=39 Identities=5% Similarity=-0.062 Sum_probs=29.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
+..++..|...|++++|+++|+++++.. |++...+..++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhh
Confidence 4455667778899999999999988865 77766665543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=18 Score=34.89 Aligned_cols=176 Identities=13% Similarity=0.015 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-hcCChHHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKN 314 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~a~~l~~~ 314 (850)
+.-|+-=|.+.+. +.|+ ..+||-|.-.+...|+++.|.+.|+...+....-+-...|.-|+. +.|++..|.+-|-.
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 3334444444433 3454 457899988899999999999999999987655555566666665 56799988877766
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 315 MQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 315 m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.-+.. -.|=...|--|+ ...-+..+|..-+.+-.+ ..|..-|...|-.|.-..-- ...+++.....
T Consensus 159 fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-------~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~- 225 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-------KSDKEQWGWNIVEFYLGKIS--EETLMERLKAD- 225 (297)
T ss_pred HHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-------hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhh-
Confidence 65443 122222332222 233455666554433221 23444454444333221111 11222222211
Q ss_pred CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 394 VTP-------NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 394 ~~p-------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
-.- =..||--|..-+...|+.++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 1346777778888889999999999887654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.96 E-value=6.1 Score=43.56 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChH
Q 003082 229 REFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 306 (850)
+...-.++++++.++.. ++.. .-+..-.+.++..+-+.|..+.|+++-.+-..+ | =|....|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------F--eLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDHR--------F--ELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------H--HHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------h--HHHHhcCCHH
Confidence 34445678888776664 2221 112455788888888889998888886542211 1 1122345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.|.++-++ ..+...|..|.+...+.|+++.|++.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHHH
Confidence 55544322 23566777777777777777777777665332 455555566666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
+.....|- ++....++.-.|++++..+++
T Consensus 397 ~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 397 KIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55554442 444444444555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.95 E-value=20 Score=34.86 Aligned_cols=197 Identities=16% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHH-HHh
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MNV 300 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l-l~~ 300 (850)
+......+...+++..+...+...... ........+..+...+...+++..+...+.........+ ....+... +..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 334455555555566555555555431 122333445555555555555666666666555432222 11222222 222
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcC
Q 003082 301 NAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~--~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g 377 (850)
..++.+.+...|.+...... ......+......+...++.+.|...+...... ... ....+..+-..+...+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHcc
Confidence 33444444444444433110 012222223333344555666666666655542 111 2344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 378 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
+++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666555555543211 122233333333344455555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.8 Score=39.80 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..+..++..|++.|+.+.|++.|.++.+....+ -...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567789999999999999999999998875444 344678888999999999999888877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=89.51 E-value=33 Score=36.70 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (850)
|..++..+.+.++...=-.|.... -+++++....|-+..+|+.-+++.+.+.... +...
T Consensus 117 g~~~~l~~~L~~i~~rLd~~~~ls----~div~~lllSyRdiqdydamI~Lve~l~~~p---~~~~-------------- 175 (374)
T PF13281_consen 117 GARKELAKELRRIRQRLDDPELLS----PDIVINLLLSYRDIQDYDAMIKLVETLEALP---TCDV-------------- 175 (374)
T ss_pred hHHHHHHHHHHHHHHhhCCHhhcC----hhHHHHHHHHhhhhhhHHHHHHHHHHhhccC---ccch--------------
Confidence 333444555555543211233222 4556666677888899999999999886531 1100
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 207 VNLAIRYACIVPRADILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 207 ~~~A~~~~~~~p~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
+....+-...+-++-+ .|+.++|++++..+......++..+|..+...|-
T Consensus 176 -----------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 176 -----------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred -----------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 0111222233445555 7889999999988666556677778887777664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.39 E-value=4 Score=38.48 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=46.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
.+.+-+.|.|++|..-|..++...+ ..+.-.. -.++.+-..++++.++++.|+.-..+++ .+.|.. ..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp--~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKai--el~pty------~kA 170 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCP--STSTEER-SILYSNRAAALIKLRKWESAIEDCSKAI--ELNPTY------EKA 170 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCc--cccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhH--hcCchh------HHH
Confidence 3345555666666666666666532 2211111 1222333344556666666666666555 333431 223
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
+...+..|-+...+++|++=|.++++.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 333344455555666666666665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.21 E-value=47 Score=38.16 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=12.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
..|..+..---..|+++-|..+.+
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHh
Confidence 445555555555555555555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.18 E-value=4.5 Score=38.40 Aligned_cols=104 Identities=17% Similarity=0.029 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
-..+..++..|++.|+++.|++.|.++......+.+. +.++-+++......|++..+...+.++...--.+.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 5778899999999999999999999988876555432 45566777777889999999999888875422222111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVL 181 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~ 181 (850)
...-+..+ .+..+..++++.+|.+.|-..
T Consensus 111 ~~nrlk~~--~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVY--EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHH--HHHHHHHhchHHHHHHHHHcc
Confidence 00001111 122234567777777776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.79 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
+..|...|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.97 E-value=16 Score=39.91 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..|.....+.|+.++|++.|.+|.+.... .+..+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 35777788899999999999999875432 2445788899999999999999999988653
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.31 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=28.3
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~ 92 (850)
.+++..+|+. ..+|..++..|...|++++|++
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 3577889998 9999999999999999999963
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.57 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
++..|+..+.+.|++++|+.+|++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.40 E-value=31 Score=35.08 Aligned_cols=149 Identities=9% Similarity=-0.073 Sum_probs=92.4
Q ss_pred HHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 196 RIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
.-+......|++.+|...|.. .|.+..+...++..|...|+.+.|..+++.+...-..........-|..+.+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344556677888888887755 4777778888999999999999999999987654222222222234455555555
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 003082 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQ 344 (850)
Q Consensus 272 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~ 344 (850)
..+...+-......--.++...--.......|+.+.|++.+-.+.+.. ---|...-..|+..+.-.|..+.+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 555555555544431112223333333345688998887766665432 2346667778888888878555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=88.26 E-value=19 Score=32.47 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Q 003082 438 ILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.++..+.+.+.......+++.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~ 34 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESAL 34 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 34445555555555555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.18 E-value=5.2 Score=40.63 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYIT 623 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 623 (850)
.++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677888888888888888888887753 34777888888888888888888888887754 677777776666
Q ss_pred HHHH
Q 003082 624 LLRA 627 (850)
Q Consensus 624 li~a 627 (850)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.01 E-value=12 Score=34.29 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...++..+..++.+++..++.-+. -+.|... ++-+.....+...|+|.+|+.+|+.+....
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALr--vLRP~~~------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALR--VLRPEFP------ELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHH--HhCCCch------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34445555668889999999998888 6688653 222222344567899999999999987654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.86 E-value=29 Score=33.98 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhC--CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003082 227 FVREFGKK-RDLVSALRAYDASKKH--LSSPNMY---ICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 227 li~~~~~~-g~~~~A~~~~~~m~~~--g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (850)
+...|... .+++.|+..|+..-+. |-+.+.. .+--+...-+..+++.+|+.+|+++....+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455444 5566666666655442 1111111 122233334455777778888777766543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.58 E-value=15 Score=33.16 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+...++..+..++.+++..+++-+. -+.|+... ..+++.++ +...|+|++|+++|+.+...+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALr--vLrP~~~e-~d~~dg~l-----~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALR--VLRPNLKE-LDMFDGWL-----LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCccc-cchhHHHH-----HHHcCCHHHHHHHHHhhhccC
Confidence 3344445556889999999998888 66786532 22233333 456799999999999887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.47 E-value=20 Score=31.67 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=74.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCC
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKW 378 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~ 378 (850)
.|..++..++..+.... .+..-||.+|--....-+-+-..+.++.+-+. .|... .-.++..|+..|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-------FDis~C~NlKrVi~C~~~~n~ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-------FDISKCGNLKRVIECYAKRNK 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-------S-GGG-S-THHHHHHHHHTT-
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-------cCchhhcchHHHHHHHHHhcc
Confidence 36777777777777663 25555555554444444444444444444321 23221 1223333333332
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+...+..-++.+.++|+-|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++
T Consensus 85 ------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 85 ------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34445566777888888888888888887543 67777788888888899999999888888
Q ss_pred Hhhccc
Q 003082 459 WTLSKT 464 (850)
Q Consensus 459 m~~~~~ 464 (850)
..+.|.
T Consensus 146 ACekG~ 151 (161)
T PF09205_consen 146 ACEKGL 151 (161)
T ss_dssp HHHTT-
T ss_pred HHHhch
Confidence 877764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.35 E-value=25 Score=32.78 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 419 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
+.++-+.+.++.|+...|..+++.+.+.|++..-..++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444555666677777777777777777666555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=5.3 Score=40.57 Aligned_cols=76 Identities=4% Similarity=-0.056 Sum_probs=62.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYVFNS 296 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 296 (850)
.++..++..+...|+++.+...++++....+ -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4566789999999999999999999998642 5888999999999999999999999999875 366665555444
Q ss_pred HH
Q 003082 297 LM 298 (850)
Q Consensus 297 ll 298 (850)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 43
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.01 E-value=11 Score=34.15 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=39.3
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.+.++.+...-...++.+++..+++.|.-.. |+.......-+..+...|++.+|+++|+.+..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3344444444445788899999999887655 66655555455555666666666666655543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.52 E-value=5.2 Score=44.14 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=95.1
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH
Q 003082 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (850)
Q Consensus 81 l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~ 160 (850)
+...|+++.|-.++..+.+. .. .+++.-+-++|-.++|+++ ...|+.. +++.+
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~r-----Felal- 648 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQR-----FELAL- 648 (794)
T ss_pred HhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhhh-----hhhhh-
Confidence 45567777777765555432 11 1111122256666666654 3344332 34333
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHH
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A 240 (850)
+.|+++.|.++..+. ++..-|..|+.+....+++..|.+.|.... -|..|+-.+...|+-+..
T Consensus 649 ------~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 649 ------KLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred ------hcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc----chhhhhhhhhhcCChhHH
Confidence 569999998877643 334558899999999999999999887653 356777778888887655
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
..+=....+.|. . |.-.-+|...|+++++++++..
T Consensus 712 ~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 555555555443 2 2233456678999999888765
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.48 E-value=12 Score=36.75 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
..++++.|..+...|++-++++--..++... |.+..+++.-+++....=+.++|..-|
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~ 287 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADL 287 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 3467778888888899988888888887655 666555555555555444444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.34 E-value=48 Score=35.39 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
...+|..+...+.+.|+++.|...+.++...+... +....-.-.+.+...|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578889999999999999999999988743211 334444556777888999999999988876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.32 E-value=34 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
....++|+.-|+..++..++-..|. +..+...+..+.+.|++++-.+.|.+++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3578999999999998854443333 34455667778899999999999988873
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.32 E-value=52 Score=35.42 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhc--cHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 003082 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTA 589 (850)
Q Consensus 514 ~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty-~~l 589 (850)
-+..|...|++-.+ .++.|..+|-+..+.| +.+++.+++++|..+|. |+...|..+|+-=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34556666666543 4688999999999988 66889999999998775 6777888888765442 4555544 456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 590 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
+.-+...++-..|..+|+...+. +.-+ ...|..+|.-=+..|++.. +..+=+.|..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~---v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNN---VYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHH---HHhHHHHHHH
Confidence 67777889999999999965542 2223 5789999999899999876 4444444543
|
|
| >COG2840 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.04 E-value=1.4 Score=41.28 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=45.3
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+|||||+..+|+.++.+++..-... + -..+.||+|-|. |+-.. +.||..|-.-|..
T Consensus 98 ~LDLHG~tq~eAr~~L~~Fi~~a~~~---~---~rcv~VihGkG~-s~g~~---~vLK~~Vp~WL~q 154 (184)
T COG2840 98 RLDLHGLTQEEARQELGAFIARARAE---G---LRCVLVIHGKGR-SKGSK---PVLKSQVPRWLTQ 154 (184)
T ss_pred eeeccCCCHHHHHHHHHHHHHHHHHh---C---CcEEEEEeCCCc-CCCCc---hhHHHHHHHHHHh
Confidence 68999999999999988877555443 2 235889999999 65433 7899999999988
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.65 E-value=2.3 Score=27.33 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..|..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56788999999999999999999999988
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.37 E-value=91 Score=36.51 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=102.8
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (850)
..+++.........+..|-+.|++++|...|-+.+.. .+|. .++.-|+...+..+-...++.+.+.|
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------~Vi~kfLdaq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------EVIKKFLDAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------HHHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 5566666777888888899999999999998877654 2443 23445667788888888888888888
Q ss_pred CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 003082 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (850)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~ 223 (850)
+.-.+. ..+++++ |.+.++.+.-.++.+... .| .-.......+..|.+.+-.++|..+..++...+.+
T Consensus 428 la~~dh-----ttlLLnc---YiKlkd~~kL~efI~~~~-~g---~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~v 495 (933)
T KOG2114|consen 428 LANSDH-----TTLLLNC---YIKLKDVEKLTEFISKCD-KG---EWFFDVETALEILRKSNYLDEAELLATKFKKHEWV 495 (933)
T ss_pred cccchh-----HHHHHHH---HHHhcchHHHHHHHhcCC-Cc---ceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHH
Confidence 766553 2334433 456677776555554332 11 11223456677777777888888777766654443
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDAS 247 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m 247 (850)
.. ..+...|++++|++.+..+
T Consensus 496 l~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 496 LD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HH---HHHHHhcCHHHHHHHHhcC
Confidence 33 3345668888888887654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.1 Score=27.30 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..+..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999988
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.20 E-value=12 Score=32.83 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=55.9
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+....+..+.............+..+..+|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 70 ~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 70 GNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444444444444444455556688889999999999999998753 347788888999999999999999999999988
Q ss_pred CCCC
Q 003082 285 QNVT 288 (850)
Q Consensus 285 ~g~~ 288 (850)
.|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8863
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.75 E-value=42 Score=34.65 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHH----HHHHHhcCCH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI----VKVFADAKWW 379 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~l----i~~~~~~g~~ 379 (850)
+..+|-..++++++. .+.|...++--=++|.-.|+.+.-...++++... ..+|...|..+ .-++...|-+
T Consensus 118 ~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-----wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-----WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-----cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 444444455555442 3556666666666677777766666666665532 23444333332 2234466777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
++|.+.-++..+.+ +-|.-.-.++...+--.|++.++.++..+-... ...+ ..-|=-..-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777766554 225556666666677777777777766543321 1100 00111111123455778888888
Q ss_pred HHH
Q 003082 456 FRS 458 (850)
Q Consensus 456 ~~~ 458 (850)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.55 E-value=1e+02 Score=36.45 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=109.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcC-------HHHHHHHH---HhhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 003082 266 CGICGDYMKSRAIYEDLRSQNVTLN-------IYVFNSLM---NVNAHDLKFTLEVYKNMQK----LGVMADMASYNILL 331 (850)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~pd-------~~t~~~ll---~~~~~~~~~a~~l~~~m~~----~g~~pd~~t~~~Ll 331 (850)
.....++++|..+..++...-..|+ ...|+.|- ..+.++++.+.++-+.... .-..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456899999999988765322222 12344443 3466788888777666544 22345667777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCC--C----CCCH
Q 003082 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-----KVFADAKW--WQMALKVKEDMLSAG--V----TPNT 398 (850)
Q Consensus 332 ~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li-----~~~~~~g~--~~~A~~l~~~m~~~g--~----~p~~ 398 (850)
.+..-.|++++|..+..+..++... .+...|.... ..+...|. +.+.+..|....... - .+-.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 8888899999999998887775422 3443333322 22445663 344444444443221 0 1223
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 399 ITWSSLINACANA-GLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 399 ~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
.++..+..++.+. +...++..-++........|-...+. .|+..+...|++++|...+.++...
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555555555552 12222222233222222223223333 6777888899999999999888654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.34 E-value=22 Score=32.75 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (850)
.+.++.+...-...++.+++..++..+.-.. |....
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e 45 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPE 45 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchH
Confidence 4555555555556788899999988887654 55433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.28 E-value=35 Score=32.48 Aligned_cols=91 Identities=9% Similarity=0.010 Sum_probs=44.5
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc---chHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD---ILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~---~~~~~li~~~~~~g~ 236 (850)
++..+.+.+++++|+.-++..+.....- -....-..+++.....|.+++|+..++...... .....-++.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 3444445555555555554444322000 001111234444444555555555444432221 122234677888888
Q ss_pred hHHHHHHHHHHHhCC
Q 003082 237 LVSALRAYDASKKHL 251 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g 251 (850)
-++|+.-|+..++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888877764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.97 E-value=1.6 Score=28.28 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=13.6
Q ss_pred CCCcchHHHHHHHHHhcCChHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
|.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555666666655554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.17 E-value=1.4e+02 Score=36.50 Aligned_cols=187 Identities=14% Similarity=0.132 Sum_probs=108.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCC
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 304 (850)
++-+-..+.+..+=+.+++++.+. +++..-| .|+.| .++|++|+..+..+.. ..|.-.++. ..+-
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~L 923 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECGE-------TYFPECKNYIKKHGL 923 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcCc-------cccHHHHHHHHhccc
Confidence 344444556667777666666542 1222222 23322 4567777766665431 111111111 1123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHH
Q 003082 305 LKFTLEVYKNMQKLGVMADMAS----YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t----~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~ 380 (850)
+.+|+.++ .|+... |.+..+-+...+.+++|.-+|+..-+. .-.+.+|-.+|+|.
T Consensus 924 y~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 924 YDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWR 982 (1265)
T ss_pred chhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHH
Confidence 33343333 345444 444445555677888888777754321 23467788899999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTI--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+|+.+..+|... -|.. +--.|+.-+...++.-+|-++..+.... +.-.+..||+...|++|.++-..
T Consensus 983 ~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 983 EALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 999999887532 1222 2356778888889888888888776542 23345667788888998887654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.91 E-value=5.9 Score=37.42 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=63.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|.+++|..-|..++ .+.|...+-.. .-+|.+.+..+.+.+.++.|+.-..+.++.+ |...
T Consensus 105 ~F~ngdyeeA~skY~~Al--e~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~----------- 168 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEAL--ESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYE----------- 168 (271)
T ss_pred hhhcccHHHHHHHHHHHH--HhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhH-----------
Confidence 347899999999999999 55776543221 1244555666778899999998887777655 3211
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 251 (850)
.+.-.-..+|.+..++++|+.=|..+.+..
T Consensus 169 -------------------kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 169 -------------------KALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred -------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 112233556777888888888888888753
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.87 E-value=3 Score=28.08 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~ 101 (850)
..++..++..|...|++++|+.++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 1e-14
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 5/143 (3%)
Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAI 590
A + LS C + + A +L + + Y +
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650
R K+ + +K + P+L++Y L+ R + + M +
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQE 230
Query: 651 GYKANDTYLKELIEEWCEGVIQD 673
G K + L+ E +
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.8 bits (174), Expect = 7e-13
Identities = 49/364 (13%), Positives = 102/364 (28%), Gaps = 54/364 (14%)
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
QMA +++ A +P + L+ ++ + QA Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
+ C+ Q A L K K
Sbjct: 134 FKCCLLTDQLPLAHHLL--------------------VVHHGQRQKRKL----------- 162
Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YN +M + + ++ ++ GL+P+ +S+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 558 CGGSGNVEGALQ-ILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
G G ++ L+ M ++G+ + + R+ LK + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK-----ANDTYLKELIEEWCEGVI 671
V LLR + + + K +E+
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 672 QDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAV 731
+ K+ + TL + ++L K L++ E L ++ R +V +
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETK--NRLEREVYEGRFSLYPFLCLLDEREVVRML 387
Query: 732 LRMM 735
L+++
Sbjct: 388 LQVL 391
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 2e-08
Identities = 25/272 (9%), Positives = 65/272 (23%), Gaps = 13/272 (4%)
Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV---KEDMLSAGVTPNTITWSSLIN 406
++ L K +A + +++++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
A G ++ +++ + AG P+ LQ Q Q+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC------LEQM 227
Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
+ + +D+ ++ + V + P T +L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL----PPPVNTSKLLRDVYA 283
Query: 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586
D ++ + + + +VE K ++ + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
+C + K + + P L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 5e-07
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 260 RTIIDVCGICGDYMKSRAI---YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
C + + + + R + L + ++N++M A F + V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
++ G+ D+ SY L+ E ++ + +G+ +F + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALF-TAVLLSEED 247
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + KVK P + S L+ L + C Q
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-13
Identities = 102/683 (14%), Positives = 196/683 (28%), Gaps = 187/683 (27%)
Query: 221 DILFCN---FVREFGKKRDLVSALRAYDASK--KH-LSSPNMYICRTIIDVCGICGDYMK 274
DIL FV F K D+ ++ + + H + S +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD---------------AVSG 63
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ ++ L S+ + + F + V + KF + K Q+ Y
Sbjct: 64 TLRLFWTLLSKQEEM-VQKF--VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRL 119
Query: 335 CLAGNTVLAQ-EIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
N V A+ + +L+ + L +L I V K W +AL V
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQ 177
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
I W +L N + ++E L ++ + NI L+ + + Q
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ-AEL 234
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--------------KDKQSITNTPNFVP 498
RL +S + L + N + + K +T+ +
Sbjct: 235 RRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAAT 285
Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
+H S + P ++L+K D R + L E+ T +P +S +I
Sbjct: 286 TTHISLDHHSMTLTPDEVK-SLLLK--YLD-CRPQDLPREVLTT--NPRRLS---II--- 333
Query: 559 GGSGNVEGALQILKIMREDG-MSPDVVAYTTAIKVCVRS------KRLKQAFSLFEE--- 608
+ D + TT I+ + +++ S+F
Sbjct: 334 -------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 609 ------------MKHY---QIQPNLVTYITLL---RARSRYGSLHEVQQCLAVYQDMWKA 650
+ + L Y +L+ S S+ + L V +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI-SIPSIYLELKVKLE---- 440
Query: 651 GYKANDTYL-KELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSL---LLEKVAVHLQK 706
N+ L + +++ + + ++ P L + HL+
Sbjct: 441 ----NEYALHRSIVDHY-------------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 707 -------SAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVN 759
+ + +D R L E +I R ++ + + L
Sbjct: 484 IEHPERMTLFRMVFLDFRFL---EQKI------RHDSTAWNASGSILNTL---------- 524
Query: 760 KIQAKHDLEV-KDAITK-------LLQDDLGLKVFLDGPS---IQHKNAHM--QKLLDSE 806
L+ K I L+ + FL I K + L+ +
Sbjct: 525 -----QQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 807 SNMAETLHIELKSSTRRPKILQR 829
+ E H K +QR
Sbjct: 577 EAIFEEAH----------KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-11
Identities = 88/528 (16%), Positives = 157/528 (29%), Gaps = 150/528 (28%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
+ Y I+ VF DA K +DM + ++ I +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----------------------DH 53
Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV---------ALGEDYDG 474
++ ++ RLF WTL Q L +Y
Sbjct: 54 IIM---SKDAV---------------SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
I + +Q T ++ D+ ++ YN+ R++
Sbjct: 94 LMSPIKT---EQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNV---------SRLQ- 135
Query: 535 LMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592
++R L P +LID GSG AL + + + +
Sbjct: 136 PYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTY----------ITLLRAR-SRYGSLHEVQQCL 641
L+ L YQI PN + I ++A R + CL
Sbjct: 193 NSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 642 AVYQDMWKAG-YKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKV 700
V ++ A + A + K L+ + K VT ++ + L+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL------TTRFKQ-----VT--DFLSAATTTHISLDHH 294
Query: 701 AVHLQKSAAENL-----AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIV--- 752
++ L ++L + L E L ++ E+ ++D L
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAES------IRDGLATWDNW 347
Query: 753 --LGPNKVNKIQAKHDLEV-KDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLL-----D 804
+ +K+ I + L V + A + + D L VF I LL D
Sbjct: 348 KHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLS--VFPPSAHI------PTILLSLIWFD 398
Query: 805 SESNMAETLHIELKSST---RRPK--------ILQRLKVP---KKSLH 838
+ + +L + ++PK I LKV + +LH
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 7e-11
Identities = 80/514 (15%), Positives = 169/514 (32%), Gaps = 116/514 (22%)
Query: 16 VATQTRLYNHRNKPNKHPVTKLFPL----ASSSSLSSIP--TVH----SSQTALLSTVRR 65
+ + RLYN K+ V++L P + L + S +T + V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 66 DLS--SRND---YYADMASKLAKDGRLE---EFAMIVESVVVSEGNVSKFASMLSLEMVA 117
+ D ++ ++ + + + LE + ++ S + S L + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 118 SGIVKSIREGR-IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEM 173
+ + + ++ +C++ VL + F+ S C+ LL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKA--WNAFNLS--------CKILLTTRFKQVTDF 280
Query: 174 FVGLME---VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC-IVPRADILFCNFVR 229
L+ + + DE ++ ++ +L R PR + +R
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIR 338
Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQ 285
+ D + + K TII+ + + R +++ L S
Sbjct: 339 DGLATWD---NWKHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 286 NV---TLNIY-----------VFNSLMN---VNAHDLKFTLEVY----KNMQKLGVMADM 324
++ L++ V N L V + T+ + + KL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 325 -----ASYNILLKACCLAGNTVLAQE----IYGEVK-HL-EAKGVLKLDVFTYSTIVKVF 373
YNI + ++ Y + HL + ++ +F VF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVF 497
Query: 374 ADAKWWQMALKVKEDMLS---AGVTPNTIT----WSSLINACANAGLVEQAMHLFEEMLQ 426
D ++ + K++ D + +G NT+ + I C N E+ ++ + L
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLP 553
Query: 427 AGCEPN---SQCCNIL---LQACVEACQFDRAFR 454
E N S+ ++L L A EA F+ A +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-05
Identities = 41/341 (12%), Positives = 102/341 (29%), Gaps = 103/341 (30%)
Query: 2 RVVFGSSSSSSSAIVATQTRLY---NHRNKPNKHPVTK-LFPLASSSSLSSIP----TVH 53
+++ + + ++ T + +H + K L +P T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL 113
+ ++++ RD + D + K ++ I+ES SL
Sbjct: 327 PRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIES---------------SL 363
Query: 114 EMVASGIVKSIREGRIDCVV---------GVLKKL-NELGVAPLELFDGSGFKLLKNECQ 163
++ + + + V +L + ++ + + + N+
Sbjct: 364 NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------NKLH 412
Query: 164 R--LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVP 218
+ L++ E + + + E + +L+ E+ + + V+ N+ + I P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH--YNIPKTFDSDDLIPP 467
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D F + + + HL + R +
Sbjct: 468 YLDQYFYSHI--------------GH-----HLKNIEHP------------ERMTLFRMV 496
Query: 279 YEDLR-----SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
+ D R ++ + S++N LKF YK
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF----YKP 532
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.64 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.56 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.4 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.37 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.34 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.28 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.28 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.16 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.11 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.09 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.03 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.73 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.64 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.58 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.47 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.42 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.39 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.39 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.36 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.25 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.14 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.1 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.09 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.08 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.06 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.06 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.06 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.06 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.06 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.05 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.01 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.97 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.95 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.95 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.93 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.92 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.9 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.89 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.88 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.87 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.85 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.83 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.83 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.66 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.56 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.0 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 96.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.92 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 96.89 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 96.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.62 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.41 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.67 | |
| 3qd7_X | 137 | Uncharacterized protein YDAL; alpha/beta/alpha fol | 93.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.83 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.23 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 89.8 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 89.47 | |
| 2zqe_A | 83 | MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin | 89.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.58 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.23 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.13 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 86.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.24 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 82.71 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=329.09 Aligned_cols=367 Identities=6% Similarity=-0.011 Sum_probs=307.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCcCHHHHHHH
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~g~~pd~~t~~~l 297 (850)
..+++.++.+|.+.|++++|+++|++|.+.++ .+...+..+...+...+..+.+. .+ +..+...+..++..+|+.+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 47889999999999999999999999998643 35566777766554443332222 22 5555555555566667776
Q ss_pred HHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
+..+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE 351 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH
Confidence 76654 5899999999999875 589999999999999999999999999999873 23477889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|..+++++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998654 3478999999999999999999999999998863 45678999999999999999999999
Q ss_pred HHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHH
Q 003082 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~ 533 (850)
|+++.... +.+..+|+.++.+|. ++.++|.
T Consensus 430 ~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 430 YTTAARLF------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHTT------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99987542 357788999998887 5789999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 534 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
++|+++.+... .+..+|+.++..|.+.|++++|.++|++|.+. +..|+ ..+|+.++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988633 37889999999999999999999999999875 77888 7899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~ 650 (850)
++.+.+ ..+..+|..+..+|.+.|++++ |.+.|+++.+.
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~ 579 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGL---AITHLHESLAI 579 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHH---HHHHHHHHHhc
Confidence 998854 3489999999999999999888 66688888774
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=328.60 Aligned_cols=483 Identities=12% Similarity=-0.002 Sum_probs=389.5
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
.|......|..++..+.+.|++++|+.+|++++...+++ .. +......+...|++++|+.+|+++... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 147 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--ND-------AFWLAQVYCCTGDYARAKCLLTKEDLY--N 147 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHTTCHHHHHHHHHHTCGG--G
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--hH-------HHHHHHHHHHcCcHHHHHHHHHHHhcc--c
Confidence 343447889999999999999999999999999774433 11 123445677999999999999998632 2
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC--------------CCCCCcccHHHHHHHHHcCCChHHHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAI 211 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (850)
++ ..++..++..|.+.|++++|+++|+++.... -.+.+...++.++..|.+.|++++|+
T Consensus 148 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 148 RS-------SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cc-------hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 32 2344455666778999999999998532111 00123678899999999999999999
Q ss_pred HHhhhC----CCCcchHHHHHHHHHhcCChHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 212 RYACIV----PRADILFCNFVREFGKKRDLVSALR--A-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 212 ~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.+|+.+ |.+..++..++..+...+..+.+.. + |..+...+..+...+|+.++..|.+.|++++|.++|+++.+
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999775 6666677777666655443333222 1 55555555555667788889999999999999999999886
Q ss_pred CCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 285 QNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
. .++..+|+.+..++ .|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 372 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEK 372 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTS
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----Cccc
Confidence 6 58899999998875 479999999999998876 447889999999999999999999999999863 3457
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|++.|++++|.++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 88999999999999999999999999987543 368899999999999999999999999999864 5578899999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
|.+.|++++|.++|+.+.... +.+..+|+.++
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~ 482 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELG 482 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHH
Confidence 999999999999999987542 45778899999
Q ss_pred HHHh--ccHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 523 KACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 523 ~~~~--~~~~~a~~l~~~m~~~----g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
..|+ ++.++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..+|+++.+.+ +.+..+|..+..+|.
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 9887 4789999999999876 77888 7899999999999999999999999998865 448899999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003082 595 RSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRA 627 (850)
Q Consensus 595 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~a 627 (850)
+.|++++|.++|+++.+. .| +...+..+...
T Consensus 562 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 999999999999999974 45 45555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=291.12 Aligned_cols=214 Identities=16% Similarity=0.211 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.+..+.+++.+.++.+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+...++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 445556666666665443 4577788888888888888888888888888888888888888887765433210
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m 539 (850)
. .+..++|.++|++|
T Consensus 82 -----------------------------------------------------~------------~~~l~~A~~lf~~M 96 (501)
T 4g26_A 82 -----------------------------------------------------P------------NPGLSRGFDIFKQM 96 (501)
T ss_dssp -----------------------------------------------------C------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------h------------cchHHHHHHHHHHH
Confidence 0 01256888999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 540 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 620 t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
||++||++|++.|++++ |+++|++|.+.|+.|+..||+.|++.|+.
T Consensus 177 ty~~Li~~~~~~g~~d~---A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 177 ELAALLKVSMDTKNADK---VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCHHH---HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999777 77899999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=283.17 Aligned_cols=206 Identities=14% Similarity=0.207 Sum_probs=174.3
Q ss_pred HHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------
Q 003082 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--------- 413 (850)
Q Consensus 343 A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--------- 413 (850)
+..+.+.+.+ ++........++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~---k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 9 SENLSRKAKK---KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred HHHHHHHHHH---hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3444455544 2322223456888899999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M---------------------------------- 131 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM---------------------------------- 131 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------
Confidence 7889999999999999999999999999999999988887777654
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 573 (850)
.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 132 ----------------------------------------------~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 132 ----------------------------------------------KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ----------------------------------------------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------HHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 4567889999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003082 574 MREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (850)
Q Consensus 574 m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~ 631 (850)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.|+..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-23 Score=225.31 Aligned_cols=293 Identities=13% Similarity=0.074 Sum_probs=155.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
++..+.+.|++++|+..++.+++. +|+...... . ....+...|++++|...++.+.+. .|+. ..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~---~---l~~~~~~~~~~~~a~~~~~~a~~~--~p~~------~~ 68 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLL---L---LSSIHFQCRRLDRSAHFSTLAIKQ--NPLL------AE 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHH---H---HHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH---H---HHHHHHHcCCHHHHHHHHHHHHhc--CCCc------hH
Confidence 455666677777777777777766 444322211 1 122344667777777777777643 4433 34
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
++...+..+...|++++|+..|++++... |+. ..++..++..|.+.|+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PDF------------------------------IDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cch------------------------------HHHHHHHHHHHHHcCC
Confidence 44555555666677777777777766543 433 3456666667777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~ 316 (850)
+++|+..|+++.+..+ .+...+..+...+...|++++|.+.|+++.+.. |
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p--------------------------- 166 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--P--------------------------- 166 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--T---------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C---------------------------
Confidence 7777777777666431 234456666666767777777777777665431 1
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003082 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 396 (850)
.+..+|+.+...+.+.|++++|...|+++.+. -+.+...|..+...+...|++++|...|++.......
T Consensus 167 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 167 -----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 12334444444444444444444444444432 0112334444444444444444444444444433211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444445555555555555555544432 223344444555555555555555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-23 Score=225.21 Aligned_cols=370 Identities=14% Similarity=0.062 Sum_probs=274.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
+.|++++|+..|+++.+ ..|+. ...+......+...|++++|...++..+...
T Consensus 11 ~~g~~~~A~~~~~~~~~--~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------- 63 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWR--QEPDN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------- 63 (388)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HCCCHHHHHHHHHHHHH--hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 55666666666666663 24543 2223333334445566666666665554432
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+..++..++..|.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+
T Consensus 64 -------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 64 -------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445788899999999999999999999998853 23567899999999999999999999998875
Q ss_pred CCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh
Q 003082 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ 364 (850)
.. +.+...+..+...+...|++++|.+.|+++.+. .+.+..
T Consensus 130 ~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 170 (388)
T 1w3b_A 130 YN----------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAV 170 (388)
T ss_dssp HC----------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred hC----------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH
Confidence 31 224556677788888899999999999999873 234578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|...|++..+.. +.+..++..+...|.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 8999999999999999999999999987543 67889999999999999999999999998864 346788999999999
Q ss_pred HhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHH
Q 003082 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~ 524 (850)
+.|++++|.+.|+++.... +.+..+|..+...
T Consensus 249 ~~g~~~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ------------------------------------------------PHFPDAYCNLANA 280 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC------------------------------------------------SSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC------------------------------------------------CCCHHHHHHHHHH
Confidence 9999999999999887532 2234556666666
Q ss_pred Hh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (850)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A 602 (850)
+. ++.++|...|+++.+. .+.+..+|..+...|.+.|++++|...++++.+.. +.+..+|..+..+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 65 4677777777777765 23456677777777777777777777777776642 33466777777777777777777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPN-LVTYITLLRAR 628 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~-~~t~~~li~a~ 628 (850)
.+.|+++.+ +.|+ ...|..+-..+
T Consensus 359 ~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 359 LMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 777777775 3443 44444444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-19 Score=203.38 Aligned_cols=441 Identities=11% Similarity=-0.013 Sum_probs=277.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+.+.|++++|+..|++++...+++ ..+......+...|++++|+..|+++++. .|+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 72 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---------VFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDY-- 72 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccH---------HHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHH--
Confidence 6778889999999999999999999999985332 12233344667899999999999999954 6654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC------CCCcchH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRADILF 224 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------p~~~~~~ 224 (850)
..++...+..+...|++++|+..|+++.... |.+.......+..+........+.+.+..+ |+. ..+
T Consensus 73 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 145 (514)
T 2gw1_A 73 ----SKVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE-LST 145 (514)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccC
Confidence 4566677778889999999999999998876 433333333333222211111111111000 000 000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNV 287 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~ 287 (850)
..-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0000000000111111111111111100 1123444444444443 6777777777777665 211
Q ss_pred CcC--------HHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 288 TLN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 288 ~pd--------~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
.|+ ..++..+... ..|+++.|...|+++.+.. |+...+..+...+...|++++|...|+.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 299 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL---- 299 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----
Confidence 111 1222222222 2356666666666665543 23667777778888888888888888877652
Q ss_pred CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.+.+...|..+...|...|++++|...|++..+.... +...+..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 300 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 300 -DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred -CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 2335567777788888888888888888888776433 56677778888888888888888888887653 33566777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHH
Q 003082 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t 517 (850)
.+...|.+.|++++|...++.+.....
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~----------------------------------------------------- 403 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELEN----------------------------------------------------- 403 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 788888888888888888876543210
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003082 518 YNILMKACCTDYYRVKALMNEMRTVG-LSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (850)
Q Consensus 518 ~~~li~~~~~~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~ 593 (850)
... ..-....|..+...|.+ .|++++|...++++.+.. +.+..+|..+...|
T Consensus 404 -----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 404 -----------------------KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp -----------------------TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -----------------------ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 000 00014478888889999 999999999999998753 34677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 594 VRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 594 ~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
.+.|++++|.+.|++..+. .|+..
T Consensus 460 ~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhcCHHHHHHHHHHHHHh--ccccH
Confidence 9999999999999999874 46543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=194.91 Aligned_cols=333 Identities=12% Similarity=0.047 Sum_probs=217.6
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+.+.+..+|+. ...+..++..+.+.|++++|+.+|+.+++. .|.... .+......+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYI------AYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556677777 889999999999999999999999999987 444322 222334456689999999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHcCCChHHHHHHhh
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
+.+. .|+. ..++...+..+...|++++|+..|+++.+.. |+.. ..+..++..+..
T Consensus 86 al~~--~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQL--KMDF------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhc--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 9954 5654 4556666777888999999999999998765 6554 455444333110
Q ss_pred hCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 216 ~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
..+..++..|.+.|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 112233344444555555555555544432 1234444555555555555555555555544321 12233333
Q ss_pred HHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc
Q 003082 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN------------ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (850)
Q Consensus 296 ~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~------------~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~ 361 (850)
.+..+ ..|++++|++.|+++.+.. +.+...+. .+...|.+.|++++|...|+.+.+. .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 33332 2245555555555554332 12223333 3488899999999999999999873 34
Q ss_pred C-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003082 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQC 435 (850)
Q Consensus 362 d-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~ 435 (850)
+ ...|..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+. .|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 4 4578889999999999999999999998764 237899999999999999999999999999874 444 455
Q ss_pred HHHHH
Q 003082 436 CNILL 440 (850)
Q Consensus 436 ~~~ll 440 (850)
+..+.
T Consensus 366 ~~~l~ 370 (450)
T 2y4t_A 366 REGLE 370 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-18 Score=189.31 Aligned_cols=196 Identities=9% Similarity=0.009 Sum_probs=106.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+...|++++|+..|++++... |+.. .++..++..|...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~------------------------------~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNY------------------------------IAYYRRATVFLAM 73 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccH------------------------------HHHHHHHHHHHHC
Confidence 4445555566667777777777777776543 4333 4555666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHh----------
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV---------- 300 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~---------- 300 (850)
|++++|+..|+.+.+.++ .+..++..+..+|.+.|++++|...|+.+.+. .|+. ..+..+...
T Consensus 74 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665432 34556666666666666666666666666654 2332 233333221
Q ss_pred ----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc
Q 003082 301 ----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 301 ----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~ 376 (850)
..|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+.+. .+.+..+|..+...|...
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----HCSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHc
Confidence 1234444444444444332 234445555555555555555555555555442 122344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDMLS 391 (850)
Q Consensus 377 g~~~~A~~l~~~m~~ 391 (850)
|++++|...|+++..
T Consensus 225 g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 225 GDHELSLSEVRECLK 239 (450)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-18 Score=196.78 Aligned_cols=437 Identities=9% Similarity=-0.007 Sum_probs=300.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+...+..+.+.|++++|+..|++++... | +...+..++.++...|++++|+..++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3455666677778999999999999998876 5 4567777888888888888888877653 6666778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a 308 (850)
|.+.|++++|+..|+.+.+.+. ++......++..+........+.+.+..+...+..|+...++.-.... .......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 8888888888888888877653 333344444444444444444444443333332222222222111110 0111111
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----hhhcCCc----ccCHhHHH
Q 003082 309 LEVYKNMQKLGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYS 367 (850)
Q Consensus 309 ~~l~~~m~~~g~---------~pd~~t~~~Ll~~~~~---~g~~~~A~~i~~~m~~-----~~~~g~~----~~d~~ty~ 367 (850)
..+...+..... +.+...+..+...+.. .|++++|...|+++.+ ....... +.+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124444444444444 8999999999998876 2100000 23456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
.+...+...|++++|...|+++.+... +..+|..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999988654 38889999999999999999999999998764 446778899999999999
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC- 526 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~- 526 (850)
++++|...|+...... +.+...+..+...+.
T Consensus 319 ~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD------------------------------------------------PENIFPYIQLACLAYR 350 (514)
T ss_dssp CTTHHHHHHHHHHHTC------------------------------------------------SSCSHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhC------------------------------------------------hhhHHHHHHHHHHHHH
Confidence 9999999999876532 224456666666665
Q ss_pred -ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cC
Q 003082 527 -TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SK 597 (850)
Q Consensus 527 -~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~li~~~~~---~g 597 (850)
++.++|...++.+.+.. +.+..+|..+...|.+.|++++|...++++.+..- .++ ...|..+...|.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 57899999999988753 23567899999999999999999999999976321 122 4489999999999 99
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcC
Q 003082 598 RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (850)
Q Consensus 598 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g 651 (850)
++++|.+.|+++.+.. ..+..++..+...+.+.|++++ |...|++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhc
Confidence 9999999999998743 3467888999999999999888 666788877643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-18 Score=197.92 Aligned_cols=420 Identities=11% Similarity=0.001 Sum_probs=298.7
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
....+...|++++|+..|+++++. .|+. ..++...+..+...|++++|++.++++++.. |+....+..++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIEL--DPNE------PVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHH--CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--CCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 344566899999999999999954 6654 4566667777888999999999999998875 77888888889
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDY 272 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~ 272 (850)
..+...|++++|+..|+.+...+......+..+...+...+|+..++.+.... ..|+.. .+..+....+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 176 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDS 176 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcCh
Confidence 99999999999998886554333333344556666667788888888886531 123333 23334455566
Q ss_pred HHHHHHHHHHHhCCCCcCHH-HHHHHHHhhc----------CChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIY-VFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNILLKAC 334 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~----------~~~~~a~~l~~~m~~~g~~pd-------~~t~~~Ll~~~ 334 (850)
+.+...+...... .+... ....+...+. ++++.|..+|+++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 6555544432221 22222 2222222221 36778888888887653 222 23566777788
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 414 (850)
...|++++|...|+.+.+ ..|+...|..+...|...|++++|...|+++.+.... +..+|..+...+...|++
T Consensus 254 ~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 889999999999999887 4567778888888999999999999999999876533 688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCC
Q 003082 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (850)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (850)
++|...|+++.+.. +.+...+..+...|.+.|++++|.+.++......
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 374 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF------------------------------- 374 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------
Confidence 99999999998864 3456788889999999999999999998876542
Q ss_pred CCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcC------
Q 003082 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGL-----SPNHISWTILIDACGGS------ 561 (850)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~-----~p~~~ty~~li~~~~~~------ 561 (850)
+.+...+..+...+. ++.++|...|+.+.+... ......+..+...|.+.
T Consensus 375 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 375 -----------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp -----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred -----------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 233445555555554 578888888888765321 11223344555667777
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 562 ----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 562 ----g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
|++++|...|+++.+.. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998753 346788899999999999999999999999874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-16 Score=182.79 Aligned_cols=325 Identities=8% Similarity=-0.026 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|+++++. +|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 92 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVF------YSNISACYISTGDLEKVIEFTTKALEI--KPDH-- 92 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCch--
Confidence 678889999999999999999999999998 4543322 223344566899999999999999954 6664
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC----C---cch
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----A---DIL 223 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~----~---~~~ 223 (850)
..++...+..+...|++++|+..|+.+ ... |+.... .+..+...+....|+..++..-. . ...
T Consensus 93 ----~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 93 ----SKALLRRASANESLGNFTDAMFDLSVL-SLN--GDFDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 456666777788899999999999743 322 322111 11222223333444444433210 0 011
Q ss_pred HHHHHHHHHhc------------------------------------------CChHHHHHHHHHHHhCCCCCC------
Q 003082 224 FCNFVREFGKK------------------------------------------RDLVSALRAYDASKKHLSSPN------ 255 (850)
Q Consensus 224 ~~~li~~~~~~------------------------------------------g~~~~A~~~~~~m~~~g~~p~------ 255 (850)
....+..|... |++++|+.+|+.+.+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence 11122222223 355556666655555322110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (850)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 333 (850)
..++..+...+...|++++|...|+.+.+. .|+...+..+-..+ .|+++.|.+.|+++.+.. +.+..+|..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 123444445555555566666665555543 23333333333322 245555555555554432 2234455555555
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003082 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 334 ~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 413 (850)
+...|++++|...|+.+.+. .+.+...|..+...|...|++++|...++++.+... .+...+..+...+...|+
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSL-----NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence 55555555555555555442 112234455555555555555555555555554321 134445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003082 414 VEQAMHLFEEMLQ 426 (850)
Q Consensus 414 ~~~A~~l~~~m~~ 426 (850)
+++|...|+++.+
T Consensus 394 ~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 394 FDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-19 Score=202.23 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 625 (850)
.|||+||++||+.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555544432 2455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 626 RARSRYGSL-HEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 626 ~a~~~~g~~-~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
+++|+.|+. ++ |.++|++|.+.|+.||..+|++++.+..+
T Consensus 208 ~glcK~G~~~e~---A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGT---IERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHH---HHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHH---HHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555542 22 34455555555555555555544444444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-15 Score=163.50 Aligned_cols=325 Identities=15% Similarity=0.069 Sum_probs=213.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..+..++..+...|++++|+..|+.+++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIA------YYRRATVFLAMGKSKAALPDLTKVIAL--KMDF-- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH------HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCc--
Confidence 667888999999999999999999999988 4443222 223334566889999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC---CCcccHHHH------------HHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRI------------VQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~ 215 (850)
..++...+..+...|++++|+..++++.+.. | +....+..+ +..+...|++++|+.+++
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3556667777888999999999999998765 5 454445444 344455555555555544
Q ss_pred hC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 216 ~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+ |.+..++..++..|...|++++|+..|+.+.+.. +.+..++..+...|...|++++|...|+...+.. |+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~ 221 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDH 221 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccc
Confidence 32 4444445555555555555555555555555432 1244455555555555555555555555544321 111
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-----hHH
Q 003082 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----FTY 366 (850)
Q Consensus 292 ~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-----~ty 366 (850)
.. +...+..+. .......+...+.+.|++++|...|+.+.+. .|+. ..|
T Consensus 222 ~~--------------~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 275 (359)
T 3ieg_A 222 KR--------------CFAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSK 275 (359)
T ss_dssp HH--------------HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHH
T ss_pred hH--------------HHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHH
Confidence 00 001111110 1112223466788999999999999998873 3332 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
..+...|...|++++|...+++..+... .+..+|..+...+.+.|++++|...|++..+.. +-+...+..+..+..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 5677889999999999999999988642 378899999999999999999999999998753 233455555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-19 Score=199.96 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 400 (850)
..-..|||+||++||+.|++++|.++|++|.++..+| +.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3456799999999999999999999999998765566 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH
Q 003082 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (850)
Q Consensus 401 y~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 451 (850)
||+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 9999999999998 58899999999999999999999999987766543333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-14 Score=155.46 Aligned_cols=296 Identities=10% Similarity=0.023 Sum_probs=240.3
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHH
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF 231 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~ 231 (850)
+.+...+..+...|++++|+..|+++++.. |+....+..++..+...|++++|+..++.+ |....++..++..|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 455666777788999999999999998865 778888999999999999999999998763 77778899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSS--PNMYICRTI------------IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
...|++++|+..|+.+.+..+. .+...+..+ ...+...|++++|+..|+.+.+... .+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 9999999999999999985321 234445544 5788999999999999999987632 344455544
Q ss_pred HHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH--------
Q 003082 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS-------- 367 (850)
Q Consensus 298 l~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~-------- 367 (850)
... ..|++++|.+.+++..+.. +.+..++..+...+...|++++|...|+...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHH
Confidence 444 4689999999999998864 5578899999999999999999999999988741 22333333
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 368 ----TIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (850)
Q Consensus 368 ----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 439 (850)
.+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++|...|++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999876433 33 235567789999999999999999999863 4478889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Q 003082 440 LQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
...|.+.|++++|.+.|+...+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-12 Score=150.53 Aligned_cols=406 Identities=12% Similarity=0.104 Sum_probs=273.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
++--...+.+|+..|.+.+|+.++++++-. |+.|....... ..++....+. +.....+...+.... .
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~Lq--nlLi~tAIka-D~~Rv~eyI~kLd~~--d----- 1051 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQ--NLLILTAIKA-DRTRVMEYINRLDNY--D----- 1051 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHH--HHHHHHHHHh-ChhhHHHHHHHhhhc--c-----
Confidence 444456777888999999999999999833 33222111111 1122222232 333344443333211 0
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.. ..+..+.+.|.++||..+|++... . ...+...+...+++++|.+++++. ..+.+|..++.+
T Consensus 1052 ----~~---eIA~Iai~lglyEEAf~IYkKa~~----~-----~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1052 ----AP---DIANIAISNELFEEAFAIFRKFDV----N-----TSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKA 1114 (1630)
T ss_pred ----HH---HHHHHHHhCCCHHHHHHHHHHcCC----H-----HHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 11 123445568999999999997521 1 122233344788999999998876 446889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a 308 (850)
+.+.|++++|+..|... .|...|..++.+|.+.|++++|.+.|....+..-.|...+. +..+++ +++++
T Consensus 1115 ql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rlee- 1185 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAE- 1185 (1630)
T ss_pred HHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHH-
Confidence 99999999999999653 46778888999999999999999999887765423334443 444433 45553
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
.+-| ++ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++
T Consensus 1186 le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1186 LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2222 22 456777888999999999999999999863 3689999999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccc
Q 003082 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (850)
Q Consensus 389 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 468 (850)
. -+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.....+
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----- 1310 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----- 1310 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----
Confidence 6 2779999999999999999999887654 34566778899999999999999999997665321
Q ss_pred cCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc----cHHHHHHHHHHHHHcCC
Q 003082 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----DYYRVKALMNEMRTVGL 544 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~----~~~~a~~l~~~m~~~g~ 544 (850)
.-....|+-+...+++ +..++.++|..-. .+
T Consensus 1311 -------------------------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni 1345 (1630)
T 1xi4_A 1311 -------------------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI 1345 (1630)
T ss_pred -------------------------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cc
Confidence 1233445555566664 2334444444221 22
Q ss_pred CC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHHHHH
Q 003082 545 SP------NHISWTILIDACGGSGNVEGALQILKIMRE-----------DGMSPDVVAYTTAIKVCVR 595 (850)
Q Consensus 545 ~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----------~g~~pd~~ty~~li~~~~~ 595 (850)
+| +...|.-++-.|.+.|+++.|....-+-.. ..-..|...|--.+.-|..
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 22 566899999999999999998843211100 0113456666666666663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-15 Score=156.39 Aligned_cols=293 Identities=12% Similarity=0.016 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+.+|+++++. +|....... .....+...|++++|+..++++.+. .|+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~------~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 89 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLP------VHIGTLVELNKANELFYLSHKLVDL--YPSN-- 89 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHH------HHHHHHHHHTCHHHHHHHHHHHHHH--CTTS--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHH------HHHHHHHHhhhHHHHHHHHHHHHHh--CcCC--
Confidence 567778899999999999999999999988 444432221 1223345889999999999999954 5554
Q ss_pred chhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHH
Q 003082 151 DGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~ 225 (850)
..++...+..+...| ++++|+..+++.++.. |+....+..++..+...|++++|+..++.+ |.....+.
T Consensus 90 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 90 ----PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp ----THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence 345556666777889 9999999999998765 777777888888888888888888877653 66667777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCCh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 305 (850)
.++..|...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------- 223 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI------------------- 223 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh-------------------
Confidence 78888888888888888888887753 2456778888888888888888888887765320
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHH
Q 003082 306 KFTLEVYKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 306 ~~a~~l~~~m~-~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~ 384 (850)
.... ....+.+..++..+...|.+.|++++|...|++..+. .+.+...|..+...|.+.|++++|..
T Consensus 224 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 224 -------KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp -------TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred -------hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHH
Confidence 0000 0011334568888888888999999999998888764 13356677788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HHcCCH
Q 003082 385 VKEDMLSAGVTPNTITWSSLINAC-ANAGLV 414 (850)
Q Consensus 385 l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~ 414 (850)
.|++..+... .+...+..+..++ ...|+.
T Consensus 292 ~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 292 YFHTALGLRR-DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHTTTTTCS-CCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHccCC-CchHHHHHHHHHHHHHhCch
Confidence 8888776532 2566677776666 344543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-15 Score=155.26 Aligned_cols=289 Identities=11% Similarity=-0.030 Sum_probs=230.1
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHH
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF 231 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~ 231 (850)
+.++..+..+...|++++|+++++++++.. |.....+..++..+...|++++|+.+++.+ |.+..++..++..|
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 345555666778899999999999998775 777778888899999999999999988663 77788999999999
Q ss_pred HhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhhcCChHHHH
Q 003082 232 GKKR-DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 232 ~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~~~~~~~~~a~ 309 (850)
...| ++++|+..|+.+.+... .+...|..+...+...|++++|+..|+.+.+.... +........+....|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 9999 99999999999998642 35678999999999999999999999999876432 223333333334568999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC----cccCHhHHHHHHHHHHhcCCHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKV 385 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~----~~~d~~ty~~li~~~~~~g~~~~A~~l 385 (850)
+.|++..+.. +.+...+..+...+...|++++|...|++..+...... .+.+..+|..+...|...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764 45678899999999999999999999998887532111 123456888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCHH
Q 003082 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQFD 450 (850)
Q Consensus 386 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~ 450 (850)
+++..+.... +...|..+...+.+.|++++|...|++..+.. +.+...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999876533 67889999999999999999999999987653 33566777777766 3455543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=163.64 Aligned_cols=289 Identities=14% Similarity=0.010 Sum_probs=196.1
Q ss_pred hcCchhHHHH-HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 125 REGRIDCVVG-VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~-~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
..|++++|+. .|+++. .+.|+... .....+...+..+...|++++|+..++++++.. |+..
T Consensus 37 ~~~~~~~a~~~~~~~a~--~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~------------ 98 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGY--QFEEENPL--RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHM------------ 98 (368)
T ss_dssp ---------CHHHHCCC--CCCSSCTT--TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCH------------
T ss_pred HHHHHHHHHhhhhhHHH--hcCCCCcc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH------------
Confidence 3477777777 777766 44444321 012234455566667788888888887777654 4443
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.++..++..|.+.|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..|+.+.
T Consensus 99 ------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 99 ------------------EAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666666666665543 2355566666666666666666666666665
Q ss_pred hCCCCcCHH------------------HHHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHH
Q 003082 284 SQNVTLNIY------------------VFNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQ 344 (850)
Q Consensus 284 ~~g~~pd~~------------------t~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~ 344 (850)
+........ ....++ ..|++++|.+.|+++.+.... ++..++..+...|.+.|++++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTSTTTGGGCC---------------CTTHHHH--HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 542111100 011111 446778888888888775422 15889999999999999999999
Q ss_pred HHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 345 ~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..|+++.+. .+.+..+|..+...|...|++++|...|+++.+... .+..++..+...|.+.|++++|...|+++
T Consensus 238 ~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 238 DCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998874 234577899999999999999999999999987643 36889999999999999999999999998
Q ss_pred HHcCCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 425 LQAGCE----------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 425 ~~~g~~----------p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+.... ....+|..+..+|.+.|++++|..+++.
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 874211 1267899999999999999999998863
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-13 Score=152.99 Aligned_cols=334 Identities=9% Similarity=0.011 Sum_probs=183.6
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+++..+|.+ ...|..++. +.+.|++++|..+|+++++. .|........ .+....+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~------~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKL------YIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHH------HHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHH
Confidence 356677877 888888888 47889999999999999987 5554433222 2233447899999999999998
Q ss_pred HcCCCCccccchhhhHHHHHHHH-hhhhcCcHHHHHH----HHHHHHhC-CCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQ-RLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~-~~~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
...|+ .+++...+. .....|++++|.+ +|+..+.. +..+++...|...+......
T Consensus 74 --~~~p~-------~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~---------- 134 (530)
T 2ooe_A 74 --MKVLH-------IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGV---------- 134 (530)
T ss_dssp --TTCCC-------HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHS----------
T ss_pred --hcCCC-------hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcC----------
Confidence 44564 223333332 1123455555544 55554432 33333322332222211110
Q ss_pred hhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 003082 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (850)
Q Consensus 215 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 294 (850)
+... .+...|+++.|..+|++.++....+....|..........|. .+.
T Consensus 135 ---~~~~--------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 135 ---EAVG--------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp ---CCCS--------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred ---CCcc--------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 0000 012367888899999888873111112233322221100110 011
Q ss_pred HHHHHhhcCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CCh----HHHHHHHHH
Q 003082 295 NSLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGE 349 (850)
Q Consensus 295 ~~ll~~~~~~~~~a~~l~~~m~------~~g---~~pd--------~~t~~~Ll~~~~~~----g~~----~~A~~i~~~ 349 (850)
..++....+++..|..++..+. +.. ++|+ ...|...+...... ++. +.|..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1111111122333433333311 111 1232 13444444322221 122 356667776
Q ss_pred HHHhhhcCCcccCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 350 VKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 350 m~~~~~~g~~~~d~~ty~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|+++
T Consensus 264 al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 264 CLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 6654 34566677777776664 67765 78888888765212225777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 416 QAMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 416 ~A~~l~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+|..+|+.+++. .|+ . ..|..++..+.+.|++++|.++|+....
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888774 443 2 4677777777788888888888887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-12 Score=148.93 Aligned_cols=310 Identities=12% Similarity=0.105 Sum_probs=198.3
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
++..+...|.+++|..+|+++.....+...+ +...+++++|.++.++. -+..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555555555555543222222222 22445555555555533 12344555555555555555555
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~ 356 (850)
..|.. - -|...|.-++..|.+.|++++|.+.|....+.
T Consensus 1126 dsYiK---------------------------------A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--- 1163 (1630)
T 1xi4_A 1126 DSYIK---------------------------------A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 1163 (1630)
T ss_pred HHHHh---------------------------------c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 55532 1 36666777888888888888888888776652
Q ss_pred CCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003082 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (850)
Q Consensus 357 g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 436 (850)
.++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|
T Consensus 1164 ---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1164 ---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 234333445788888888887544332 1 346667777888888888888888888874 368
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHH
Q 003082 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (850)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (850)
..+...|++.|++++|.+.+++. .+..
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-----------------------------------------------------~n~~ 1251 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-----------------------------------------------------NSTR 1251 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-----------------------------------------------------CCHH
Confidence 88888888888888888888753 2445
Q ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 517 t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
+|.-+-.+|.. ++..|...... +..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 66655555543 34444443322 33466677889999999999999999998777543 334557777777777
Q ss_pred Hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHH
Q 003082 595 RS--KRLKQAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 595 ~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~a~~~~g~~~~a 637 (850)
+. ++..++.++|..-. .+.| +...|.-++--|.+.|.++.|
T Consensus 1326 Ky~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred hCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 74 45666667666432 2333 466788888888888888875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-12 Score=145.93 Aligned_cols=347 Identities=12% Similarity=0.038 Sum_probs=268.0
Q ss_pred CcccHHHHHHHHHc----CCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHH
Q 003082 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (850)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 259 (850)
++.....++..|.. .+++++|+.+|+.. ..+..++..|...|.. .+++++|+..|+...+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556677777776 78888888888764 3445677888888888 889999999999888754 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh------cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003082 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (850)
Q Consensus 260 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~------~~~~~~a~~l~~~m~~~g~~pd~~t~~~ 329 (850)
..|...|.. .+++++|+..|+...+.| +...+..|-..+ .++.+.|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888887 788999999999888776 233333333322 458889999999888865 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 330 Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
|...|.. .++.++|.+.|+...+ ..+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888887 8899999999988775 2356677777777776 789999999999988765 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHhhccccccccCcc
Q 003082 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (850)
Q Consensus 402 ~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~~~ 472 (850)
..+...|.. .++.++|..+|++..+.| +...+..+...|... +++++|...|+...+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 777777777 889999999999988765 556777777788777 89999999998776432
Q ss_pred CCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc-----cHHHHHHHHHHHHHcCCCCC
Q 003082 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPN 547 (850)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~-----~~~~a~~l~~~m~~~g~~p~ 547 (850)
+...+..+-..|.. +.++|...|+...+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 22334444444432 5788999999888863 5
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 003082 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 548 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 614 (850)
...+..|...|.. .++.++|..+|++..+.| +...+..+...|.+ .++.++|...|++..+.|.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6788888888888 899999999999999865 57788889999988 8999999999999998663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-12 Score=147.24 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=179.9
Q ss_pred cCChHHHHHHHHHHHHhhhcC-----CcccC--------HhHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCC
Q 003082 337 AGNTVLAQEIYGEVKHLEAKG-----VLKLD--------VFTYSTIVKVFADA----KWW----QMALKVKEDMLSAGVT 395 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g-----~~~~d--------~~ty~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~ 395 (850)
.++++.|..++..+......- .+.|+ ...|...+...... ++. +.+..+|++.+....
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p- 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG- 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-
Confidence 355677777776644321100 02333 24555555433222 222 477889999887532
Q ss_pred CCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 396 PNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 396 p~~~ty~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
-+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+.|++++|..+|+....
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 368888888888876 79877 8999999988632344678899999999999999999999998875
Q ss_pred ccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcC--HHHHHHHHHHHh--ccHHHHHHHHH
Q 003082 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACC--TDYYRVKALMN 537 (850)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~li~~~~--~~~~~a~~l~~ 537 (850)
. .|+ ...|...+..+. ++.++|..+|+
T Consensus 350 ~-------------------------------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 350 I-------------------------------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp S-------------------------------------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------------------------------------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3 333 246666666654 46789999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 003082 538 EMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQ 615 (850)
Q Consensus 538 ~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~ 615 (850)
...+... .+...|...... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..
T Consensus 381 ~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 9987522 233333332222 346899999999999998752 3367899999999999999999999999999853 33
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 616 PN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 616 p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
|+ ...|...+......|+.+.+ ..+++++.+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~---~~~~~r~~~ 491 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASI---LKVEKRRFT 491 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHH
Confidence 32 55888888888889998774 445555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=156.47 Aligned_cols=275 Identities=11% Similarity=-0.022 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|+++++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-- 132 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA------WQFLGITQAENENEQAAIVALQRCLEL--QPNN-- 132 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC--
Confidence 566888999999999999999999999988 4443222 233344566899999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
..++..++..+...|++++|+..++++++.. |+....+..++ .....+..++..
T Consensus 133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--------------------~~~~~~~~l~~~ 186 (365)
T 4eqf_A 133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK--------------------GSPGLTRRMSKS 186 (365)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------------------------
T ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc--------------------cchHHHHHHHHH
Confidence 4566677777888999999999999988754 43332222210 011334556777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
|.+.|++++|+..|+++.+..+. .+..++..+...|...|++++|+..|+++.+..
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 243 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----------------------- 243 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------
Confidence 88888888888888888775432 157778888888888888888888888776531
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.+..+|+.+...|.+.|++++|...|+++.+. .+.+..+|..+...|...|++++|...|+++
T Consensus 244 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 244 -----------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123444455555555555555555555554442 1122444555555555555555555555554
Q ss_pred HHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 390 LSAGVT-----------PNTITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 390 ~~~g~~-----------p~~~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
.+.... .+...|..+..++...|+.+.+..+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 432110 023455666666666666665555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=156.62 Aligned_cols=351 Identities=11% Similarity=0.078 Sum_probs=149.5
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.|+.++|.++++++- .+..|+.+++++.+.|++++|++.|...+ +...|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3477888888888762 22468888888888888888888887654 345777888888888888888887776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS 326 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t 326 (850)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------~pn~~a 124 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------GPNNAH 124 (449)
T ss_dssp ------------------------CHHHHTTTTT----------------------------------------CC----
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------------------------CCcHHH
Confidence 6653 3556778888888888888888776663 255568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~ 185 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 185 (449)
T ss_dssp ------------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHH
Confidence 888888888888888888888753 25888888888888888888888887 27888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhh
Q 003082 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (850)
+|+..|+++.|...... +..++.-...++..|.+.|++++|..+++......
T Consensus 186 aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----------------------- 237 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----------------------- 237 (449)
T ss_dssp HHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-----------------------
T ss_pred HHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-----------------------
Confidence 88888888888554443 22344445567888888888888888888765322
Q ss_pred cccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc-cHHHHHHHHHHHHH-cCCCC------CHHHHHHHHHHH
Q 003082 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRT-VGLSP------NHISWTILIDAC 558 (850)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~-~~~~a~~l~~~m~~-~g~~p------~~~ty~~li~~~ 558 (850)
+-....|+-+--.|++ ..++..+-++.... .+++| +...|.-+...|
T Consensus 238 -------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 238 -------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp -------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 2334555556556664 33333332222211 12222 455788899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~ 638 (850)
.+.++++.|.. .|.+. .|+..--..+.+...+..+.+--.+...--.+ -.|.. ++-|+.++...=+..+
T Consensus 293 ~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r-- 361 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTR-- 361 (449)
T ss_dssp HHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHH--
T ss_pred HhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHH--
Confidence 99999998876 35553 34444444445555566665544333333332 23443 5666666654434333
Q ss_pred HHHHHHHHHHHcCCCC
Q 003082 639 QCLAVYQDMWKAGYKA 654 (850)
Q Consensus 639 ~a~~l~~~M~~~g~~p 654 (850)
+ .+.+.+.|.-|
T Consensus 362 -~---v~~~~~~~~l~ 373 (449)
T 1b89_A 362 -A---VNYFSKVKQLP 373 (449)
T ss_dssp -H---HHHHHHTTCTT
T ss_pred -H---HHHHHHcCCcH
Confidence 2 33445556555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=151.90 Aligned_cols=96 Identities=9% Similarity=-0.090 Sum_probs=77.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|+..|+.+.+..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 128 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------------- 128 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---------------
Confidence 567788999999999999999999998864 2467788899999999999999999988876431
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
+.+..++..+...|...|++++|.+.|+.+..
T Consensus 129 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 129 -------------------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23566777788888888888888888888776
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-11 Score=138.15 Aligned_cols=351 Identities=11% Similarity=0.020 Sum_probs=282.2
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcC
Q 003082 219 RADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLN 290 (850)
Q Consensus 219 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd 290 (850)
.+..++..|...|.. .+++++|+..|+...+.| +...+..|...|.. .+++++|...|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344677788888888 899999999999998864 57788889999998 899999999999998876 3
Q ss_pred HHHHHHHHHh--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcc
Q 003082 291 IYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLK 360 (850)
Q Consensus 291 ~~t~~~ll~~--~----~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~ 360 (850)
...+..|-.. . .++.++|++.|++..+.| +...+..|...|.. .++.++|.+.|+...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 3333333322 2 458999999999998876 67788888888887 78999999999998762
Q ss_pred cCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC
Q 003082 361 LDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPN 432 (850)
Q Consensus 361 ~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~ 432 (850)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367788888888888 899999999999998875 67788888888886 789999999999998765 5
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccc
Q 003082 433 SQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (850)
Q Consensus 433 ~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (850)
...+..+-..|.. .++.++|.+.|+...+.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------------------------- 289 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 5677777777877 899999999999876432
Q ss_pred cCCCcCHHHHHHHHHHH--h-----ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCC
Q 003082 509 FSFKPTTTTYNILMKAC--C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDG 578 (850)
Q Consensus 509 ~~~~p~~~t~~~li~~~--~-----~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g 578 (850)
+...+..+-..| . ++.++|...|+...+.| +...+..|...|.+.| +.++|..+|++..+.|
T Consensus 290 -----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 290 -----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp -----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 222333333333 2 47899999999998864 4567777888888767 8899999999999864
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHc
Q 003082 579 MSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 579 ~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~----~g~~~~a~~a~~l~~~M~~~ 650 (850)
+...+..+...|.. .++.++|.++|++..+.| +...+..|-..|.+ .++.++ |...|++..+.
T Consensus 362 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A~~~~~~A~~~ 432 (490)
T 2xm6_A 362 ---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---AWAWFDTASTN 432 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHHC
Confidence 68889999999998 899999999999999875 56777788888877 677666 77788888877
Q ss_pred CCC
Q 003082 651 GYK 653 (850)
Q Consensus 651 g~~ 653 (850)
|..
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-14 Score=152.94 Aligned_cols=256 Identities=12% Similarity=-0.002 Sum_probs=188.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
+..++..+.+.|++++|+.+|+.+ |.+..++..++..|.+.|++++|+..|+++.+.. +.+..+|..+..+|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 344444444444444444444332 4445677778888888888888888888887753 23567788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHH-----------HHHHHHHh--hcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 003082 270 GDYMKSRAIYEDLRSQNVTLNIY-----------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (850)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~ 335 (850)
|++++|+..|+++.+.. |+.. .+..+... ..|++++|++.|+++.+.... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888877642 2211 11111222 345788888888888776422 26889999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 336 ~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
..|++++|.+.|+++.+. .+.+..+|..+...|...|++++|...|+++.+.... +..+|..+...|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 2446789999999999999999999999999886433 5889999999999999999
Q ss_pred HHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 416 QAMHLFEEMLQAGC-----------EPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 416 ~A~~l~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+|...|+++.+... ..+...|..+..++...|+.+.+....+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987421 11357889999999999999999887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=146.08 Aligned_cols=262 Identities=8% Similarity=-0.074 Sum_probs=195.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..++++++.. |+ +..++..++..|...|+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~------------------------------~~~~~~~l~~~~~~~~~ 70 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PE------------------------------REEAWRSLGLTQAENEK 70 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC------------------------------CHHHHHHHHHHHHHcCC
Confidence 34455556666777777777777666543 33 33556666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH-----------------HH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-----------------MN 299 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-----------------l~ 299 (850)
+++|...|+++.+.. +.+..++..+...|...|++++|...|+.+.+.... +...+..+ +.
T Consensus 71 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 71 DGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCT
T ss_pred HHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 777777777777643 235667777777777778888888777777765211 11111111 12
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 300 ~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
...+++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+. .+.+..+|..+...|...|++
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCH
Confidence 23357888999999988765 447889999999999999999999999998874 234577899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCC
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQ 448 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~ 448 (850)
++|...|+++.+... .+..+|..+...+.+.|++++|...|+++.+..... +...+..+..+|.+.|+
T Consensus 223 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 999999999987643 368899999999999999999999999998753221 46788999999999999
Q ss_pred HHHHHHHHHHH
Q 003082 449 FDRAFRLFRSW 459 (850)
Q Consensus 449 ~~~A~~l~~~m 459 (850)
+++|..+++..
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-13 Score=153.27 Aligned_cols=366 Identities=11% Similarity=-0.028 Sum_probs=240.3
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC---C
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~ 144 (850)
....|+.|+..+...|++++|+..|+++++... .+.. ........+.+....|...|++++|+..|+++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 478899999999999999999999999887521 1110 011123345556667779999999999999987541 1
Q ss_pred CCccccchhhhHHHHHHHHhh--hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH---HcCCChHHHHHHhhh---
Q 003082 145 APLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC---VNKPDVNLAIRYACI--- 216 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~--- 216 (850)
.+..... ..++...+..+ ...+++++|+..|++.++.. |+.+..+..++.++ ...++.++|+..++.
T Consensus 129 ~~~~~~~---~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIES---PELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhh---HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1111111 23333333222 33568999999999998865 88777777666654 346777777776654
Q ss_pred -CCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-
Q 003082 217 -VPRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN- 290 (850)
Q Consensus 217 -~p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd- 290 (850)
-|.+..++..+...+.. .|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+. .|+
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 280 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNN 280 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCh
Confidence 37777777777666554 467889999999988753 356788999999999999999999999998876 343
Q ss_pred HHHHHHHHHhhc---------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 291 IYVFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 291 ~~t~~~ll~~~~---------------------~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
..++..+-.++. +..+.|...|+...+.. +.+..++..+...|...|++++|.+.|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 344443322211 13456777787777654 34567788899999999999999999998
Q ss_pred HHHhhhcCCcccCHh----HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 350 VKHLEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 350 m~~~~~~g~~~~d~~----ty~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..+ ..++.. .+..+.. .+...|++++|+..|.+.++. .|+...... ..+.+.++++..
T Consensus 360 aL~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~ 422 (472)
T 4g1t_A 360 EFS------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMR 422 (472)
T ss_dssp HHH------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHH
T ss_pred HHh------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHH
Confidence 876 233322 2223322 245779999999999998875 444332222 234445566666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 425 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
.+.. +.+..+|..+...|...|++++|.+.|++..+.+
T Consensus 423 l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 423 LSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5553 5567889999999999999999999999887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=143.07 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=148.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
....-.|.|+.|+..++..... .|... .......+.+|+..|++++|+..++. ..|. ...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~------~~~a~ 68 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKP-----SSAP------ELQAV 68 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhcc-----cCCh------hHHHH
Confidence 3455678999999988876554 44421 11111234567788999988876543 1221 13444
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
..+...+...|+.++|++.+++++..+..|++...+..++..+...|++++|++.++. |.+..++..++..|.+.|+++
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4455666678889999999998887655566665566666666666666666666655 555555555666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m 315 (850)
+|.+.|+.+.+.. |+... ....+..+...|++++|..+|+++.
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l-------------------------------- 193 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA-------------------------------- 193 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--------------------------------
Confidence 6666666665542 22111 1112222223344555554444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 003082 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (850)
Q Consensus 316 ~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~ 392 (850)
+. .+.+...++.+..++.+.|++++|...|++.... -+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 194 -~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 194 -DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 32 2445666666777777777777777777766652 12345566666666666666654 45666666654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=145.42 Aligned_cols=279 Identities=9% Similarity=-0.017 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+.+|+++++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-- 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEA------WRSLGLTQAENEKDGLAIIALNHARML--DPKD-- 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCC--
Confidence 566778899999999999999999999988 4443222 222334566899999999999999954 5554
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH-HH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF-VR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~l-i~ 229 (850)
..++...+..+...|++++|+..++++.... |.....+..+...+ +.. .....+ ..
T Consensus 89 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~ 145 (327)
T 3cv0_A 89 ----IAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------VDI-DDLNVQSED 145 (327)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------HHH-HHHHHHHHh
Confidence 4556666777888999999999999998765 44433333221111 000 111123 22
Q ss_pred -HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHH
Q 003082 230 -EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT 308 (850)
Q Consensus 230 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a 308 (850)
.+...|++++|+..|+++.+... .+..++..+...|...|++++|...|+++.+..
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------- 202 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------------------- 202 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------
Confidence 36777889999999998887542 467888888899999999999999998876531
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
+.+..++..+...+...|++++|...|+.+.+. .+.+..+|..+...|...|++++|...|++
T Consensus 203 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 203 ------------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 224556666677777777777777777776653 123456677777777777777777777777
Q ss_pred HHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 389 MLSAGVTP-----------NTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 389 m~~~g~~p-----------~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..+..... +..+|..+..++.+.|+.++|..++++.
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66543221 3566777777777777777777776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-15 Score=156.72 Aligned_cols=279 Identities=12% Similarity=0.106 Sum_probs=120.3
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
+.|+.++|..+++..+.+ .+|..|+.++.+.|++++|++.|... +|..+|..++.++...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566666666666443 36666666666666666666666432 34456666666666666666666644433
Q ss_pred HhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 283 ~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
+ +. .+++.+.+.|+.+|.+.|+++++.++++ .|+
T Consensus 88 r---------------------------------k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn 121 (449)
T 1b89_A 88 R---------------------------------KK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPN 121 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTT-----------CC-
T ss_pred H---------------------------------Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCc
Confidence 3 21 3457788899999999999999888773 367
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 779999999999999999999999977 36999999999999999999999988 278999999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
|+..|+++.|......+.
T Consensus 187 Cv~~~ef~lA~~~~l~L~-------------------------------------------------------------- 204 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV-------------------------------------------------------------- 204 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT--------------------------------------------------------------
T ss_pred HHHcCcHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999944321110
Q ss_pred HHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHH
Q 003082 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS--KRLK 600 (850)
Q Consensus 523 ~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~--g~~~ 600 (850)
.++.-...++..|.+.|++++|..+++...... .-....|+.+.-+|++- +++.
T Consensus 205 -----------------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 205 -----------------------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 111112347777888888888888888877544 44567777777777764 3455
Q ss_pred HHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHH
Q 003082 601 QAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 601 ~A~~l~~~m~~~g~~p------~~~t~~~li~a~~~~g~~~~a 637 (850)
+.+++|..- -.+.| +...|.-+.-.|...+.++.|
T Consensus 261 ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 261 EHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 555555421 12322 344566666667777776664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-12 Score=141.07 Aligned_cols=328 Identities=11% Similarity=-0.017 Sum_probs=150.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCcCH-
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-----L-SS-PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNI- 291 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~- 291 (850)
.+|.+++..|...|++++|...|+...+. + .. ....++..+..++.+. +++++|+..|++..+. .|+.
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCH
Confidence 34555555555555555555555544321 0 00 1233444444444333 2455666666555543 2221
Q ss_pred HHHHHHHHh-----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 292 YVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 292 ~t~~~ll~~-----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
..+..+..+ ..++.++|++.|++..+.. +.+...+..+...+.. .|++++|.+.+++.... .+.+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~ 246 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGV 246 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSC
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccH
Confidence 112111111 1234444555555554432 2234444444333332 23455566666555442 1233
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-------------------AGLVEQAMHLFEE 423 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-------------------~g~~~~A~~l~~~ 423 (850)
...+..+...|...|++++|...+++..+.... +..++..+...|.. .+..++|...|+.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555666666666666666666665554322 34444444443322 1235667777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccc
Q 003082 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503 (850)
Q Consensus 424 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (850)
..+.. +.+..++..+...|.+.|++++|.+.|++.....
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---------------------------------------- 364 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---------------------------------------- 364 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------------------------
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC----------------------------------------
Confidence 66653 3344566777778888888888888887765432
Q ss_pred ccccccCCCcCHHH----HHH---HHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003082 504 SFDKRFSFKPTTTT----YNI---LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (850)
Q Consensus 504 ~~~~~~~~~p~~~t----~~~---li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 576 (850)
|+... +.. +.....++.++|...|.+..+ +.|+....... ...+.++++...+
T Consensus 365 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 365 ---------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 11111 111 111112456777777777666 34443322211 2334445555444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 003082 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVT 620 (850)
Q Consensus 577 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t 620 (850)
.. +.+..+|+.+...|...|+.++|++.|++..+.| ..|+..+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 32 3456677778888888888888888888777633 2344433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=136.42 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=190.6
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHcCCChHHHHHHhhhC-CCCcchHHHHHHHHHhcCChHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-p~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (850)
..|++.+|+..++.+... .|++ ......++++|...|+++.|+..++.. |+...++..++..+...++.++|++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 579999999988865432 2443 234466788999999999999877654 222256667888899999999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCC
Q 003082 245 DASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321 (850)
Q Consensus 245 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~ 321 (850)
+++...+..| +...+..+..+|...|++++|++.|+. ..+...+..+... ..|+.++|.+.|+++.+..
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 9988766445 566777778889999999999999886 3445555555554 4578888888888887764
Q ss_pred CCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 322 ADMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 322 pd~~t~---~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 398 (850)
|+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|++.++.... +.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 443211 22334444458888888888888763 3456778888888888888888888888888776433 67
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 399 ITWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 399 ~ty~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
.++..++..+...|+.++ +..+++++.+. .|+... +.+...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 788888888888888765 56788888765 344322 233445555555554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=139.74 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=137.7
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc-hhHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLN 140 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~ 140 (850)
++..+|+. ..+|..++..+...|++++|+..|+++++. +|..+..+.. + ...+...|+ +++|+..|++++
T Consensus 89 ai~~~p~~-~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~---~---g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 89 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHF---R---RVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHH---H---HHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhCChhh-HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHH---H---HHHHHHcccCHHHHHHHHHHHH
Confidence 44556665 788888999999999999999999999988 6665444222 2 223447786 999999999999
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (850)
+ +.|+. ..++.+.+..+...|++++|+..|++++... |++...|+.++.++...|++++|+.+++.+
T Consensus 160 ~--l~P~~------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 160 E--EQPKN------YQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp H--HCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4 46765 5667777777778899999999999988765 777766777777666666666666665543
Q ss_pred -CCCcchHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 003082 218 -PRADILFCNFVREFGK-KRDLVSA-----LRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDL 282 (850)
Q Consensus 218 -p~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 282 (850)
|.+..+|+.+..+|.+ .|..++| +..|+..+...+ -+...|+.+..++.+.| ++++|++.+.++
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 5555666666666666 4444555 355666655321 24556666666666655 456666555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=127.41 Aligned_cols=194 Identities=9% Similarity=-0.007 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|....... .....+...|++++|+..|+++.+ +.|+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~------~lg~~~~~~g~~~~A~~~~~~al~--~~P~~-- 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALY------WLARTQLKLGLVNPALENGKTLVA--RTPRY-- 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHH------HHHHHHHHTTCHHHHHHHHHHHHH--HCTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHH--hCCCc--
Confidence 678889999999999999999999999988 555433322 223345689999999999999995 46765
Q ss_pred chhhhHHHHHHHHhhhhc-----------CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--
Q 003082 151 DGSGFKLLKNECQRLLDS-----------GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (850)
...+..++..+... |++++|+..+++.++.. |+....+..++.++...|++++|+..|+.+
T Consensus 73 ----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 73 ----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 45566666777778 99999999999998865 777777888888888888888888777552
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 218 -p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
..+..++..++..|...|++++|+..|+...+..+ .+...+..+..++...|++++|+..|++..
T Consensus 147 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 24456677788888888888888888888777532 356677777888888888888888777643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=121.06 Aligned_cols=201 Identities=11% Similarity=-0.032 Sum_probs=145.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
+|++...+..++..+.+.|++++|+..|++.++..+ .+...+..+..++.+.|++++|+..|++..+.. |+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~------ 71 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PR------ 71 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------
Confidence 356667788888899999999999999998887532 467788888888999999999999888877542 22
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhhhcCCcccCHhH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~-----------g~~~~A~~i~~~m~~~~~~g~~~~d~~t 365 (850)
+...+..+...+... |++++|...|++..+. -+-+...
T Consensus 72 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 72 --------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred --------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 233344444444444 8999999999988873 1234677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 366 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
|..+...|...|++++|+..|++..+.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888888999999999999999998877 588889999999999999999999999998864 4466778888888999
Q ss_pred hCCHHHHHHHHHHHh
Q 003082 446 ACQFDRAFRLFRSWT 460 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~ 460 (850)
.|++++|...|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999998887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=125.75 Aligned_cols=204 Identities=13% Similarity=-0.014 Sum_probs=154.2
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|......+..++..+...|++++|+..|+++++. .|.... .+......+...|++++|++.|+++.+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSAD------AHAALAVVFQTEMEPKLADEEYRKALAS-- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 345545788999999999999999999999999988 343221 2223334566899999999999999954
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~ 220 (850)
.|+. ..++...+..+...|++++|++.++++...+..|.....+..++..+...|++++|+.+++. .|.+
T Consensus 101 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 101 DSRN------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CcCc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 4543 44556666777889999999999999887333465666677788888888888888887765 3556
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..++..++..|...|++++|...|+.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67777788888888888888888888776432 45667777778888888888888888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=118.81 Aligned_cols=225 Identities=11% Similarity=0.036 Sum_probs=152.3
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
+.+...+..+...|++++|+..+++.++.. +.. .++..++..|...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~------------------------------~~~~~~~~~~~~~~ 52 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDI------------------------------TYLNNRAAAEYEKG 52 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCT------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccH------------------------------HHHHHHHHHHHHcc
Confidence 344555566667788888888888776654 222 45556666666677
Q ss_pred ChHHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 236 DLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~--p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
++++|+..|+...+.... ++ ..+|..+...|...|++++|+..|+...+. .|+...+ ...+++++|.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~-----~~~~~~~~a~ 125 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADIL-----TKLRNAEKEL 125 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH-----HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhHHH-----HHHhHHHHHH
Confidence 777777777666553211 11 466777777777777777777777777664 2332221 1224566677
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.++.+.... +.+...+..+...+...|++++|...|+++.+. .+.+..+|..+...|...|++++|...|++.
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777666543 234566777888888888888888888887763 2345677888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 390 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.+... .+..+|..+...+.+.|++++|...|++..+.
T Consensus 200 l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77543 25777888888888888888888888887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-11 Score=120.58 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=187.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLN----IYVFN 295 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd----~~t~~ 295 (850)
..+..++..+...|++++|+..|+++.+.. .+..+|..+..+|...|++++|+..|+...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 567789999999999999999999999876 7788999999999999999999999999876421 122 34555
Q ss_pred HHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHH
Q 003082 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (850)
Q Consensus 296 ~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~ 373 (850)
.+-.+ ..+++++|.+.|++..+.. |+. ..+.+.|++++|...++.+... .+.+...|..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 55444 4579999999999998853 443 3566778999999999998862 233466788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003082 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (850)
...|++++|...|++..+.... +..+|..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999886533 78899999999999999999999999999874 456788999999999999999999
Q ss_pred HHHHHHhhcc
Q 003082 454 RLFRSWTLSK 463 (850)
Q Consensus 454 ~l~~~m~~~~ 463 (850)
+.|+......
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=127.08 Aligned_cols=251 Identities=10% Similarity=-0.081 Sum_probs=130.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++.+. .+.. .+....++...+..+...|++++|+..+++.+... |+....+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------- 82 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS--RALT--DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNY-------- 82 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS--SCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHH--------
T ss_pred ccchHHHHHHHHHHHHhc--cccc--CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHH--------
Confidence 568888888888888854 2211 12224556666667777888888888888877654 544444444
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
++..|...|++++|+..|+.+.+..+ .+..++..+..+|.+.|++++|...|+.+.+
T Consensus 83 ----------------------la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 83 ----------------------LGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ----------------------HHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44445555555555555555444321 2344455555555555555555555555544
Q ss_pred CCCCcCHHHHHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
.. |+.......+. ...+++++|...+++..... +++...+. ++..+...++.++|...+.......... ...+
T Consensus 140 ~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 214 (275)
T 1xnf_A 140 DD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL-AEHL 214 (275)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHH
T ss_pred hC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccc-cccc
Confidence 31 22111111111 12245555555554444432 22333332 5555556666666666666654311000 0011
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
..+|..+...|...|++++|...|++..+.. |+. +.....++...|++++|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4566666777777777777777777777653 221 222244555666666666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-12 Score=129.91 Aligned_cols=249 Identities=9% Similarity=-0.043 Sum_probs=183.9
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
...|++++|+..++++++.. +... |....++..++..|...|++++|+..|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR--ALTD--------------------------DERAQLLYERGVLYDSLGLRALARNDFS 67 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS--CCCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc--cccC--------------------------chhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 35689999999999988753 1110 0112567788999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD 323 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd 323 (850)
++.+..+ .+..+|..+..+|...|++++|+..|+...+... .+...+..+-.+ ..|++++|.+.|+++.+.. |+
T Consensus 68 ~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~ 143 (275)
T 1xnf_A 68 QALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PN 143 (275)
T ss_dssp HHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC
Confidence 9988643 4688999999999999999999999999987532 234455555444 4689999999999998863 55
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTIT 400 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t 400 (850)
......++..+...|++++|...|...... .+++...+ .++..+...++.++|...+.......... +..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 455555666667889999999999877763 23344444 47777888888999999998886542211 1578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
|..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|.+-+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8899999999999999999999998753 422 223355677888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.5e-11 Score=120.77 Aligned_cols=229 Identities=14% Similarity=0.018 Sum_probs=165.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---CCCcc----hHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADI----LFCNFVR 229 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---p~~~~----~~~~li~ 229 (850)
.+...+..+...|++++|+..+++.++.. |+....+..++..+...|++++|+.+++.+ |.+.. ++..++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34555666778999999999999998865 777788999999999999999999988764 33332 3788999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-Hh-hcCChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV-NAHDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~~-~~~~~~~ 307 (850)
.|...|++++|+..|+...+..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+- .. ..+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888543 356788999999999999999999999887652 22344444443 33 3357778
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhhhcCCcccC------HhHHHHHHHHHHhcCC
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKW 378 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~---~~~A~~i~~~m~~~~~~g~~~~d------~~ty~~li~~~~~~g~ 378 (850)
|.+.|++..+.. +.+...+..+...+...|+ +++|...|++..+..... |+ ..+|..+...|...|+
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCC
Confidence 888888777653 3346666667777777777 777777777776643221 22 1355556666666677
Q ss_pred HHHHHHHHHHHHHCC
Q 003082 379 WQMALKVKEDMLSAG 393 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g 393 (850)
+++|...|++..+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777776666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-11 Score=118.39 Aligned_cols=198 Identities=9% Similarity=-0.060 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+.+++. .|.... .+......+...|++++|+..|+++.+. .|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNEL------AWLVRAEIYQYLKVNDKAQESFRQALSI--KPDS-- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchH------HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--
Confidence 788889999999999999999999999987 343222 2223334566899999999999999854 5543
Q ss_pred chhhhHHHHHHHHhhhhc-CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHH
Q 003082 151 DGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFC 225 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~ 225 (850)
...+...+..+... |++++|+..++++.+....|.....+..++..+...|++++|+.+++. .|.+..++.
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 34556667778889 999999999999987333344455566666666677777777666544 255555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..|.+.|++++|...|+.+.+..+..+...+..+...+...|+.++|...++.+.+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666777777777666666543213455556666666666666666666666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-11 Score=126.96 Aligned_cols=243 Identities=10% Similarity=0.016 Sum_probs=172.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC-hHHHHHHhhhC----CCCcchHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD-VNLAIRYACIV----PRADILFCNFVR 229 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~----p~~~~~~~~li~ 229 (850)
.+++......+...|++++|+..+++++... |+....|+.++.++...|+ +++|+..|+.+ |.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4556666667778899999999999998866 8888788888888888885 88888777653 777778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
+|.+.|++++|+..|+.+++..+ .+..+|..+..++.+.|++++|+..|+++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~----------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------------
Confidence 88888888888888888877532 366777788888888887777777777766541
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC--CHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQM 381 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~-~g~~~~A-----~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g--~~~~ 381 (850)
+-+...|+.+..++.+ .|..++| .+.|+....+ -+-+...|+.+...+...| ++++
T Consensus 231 -----------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 231 -----------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred -----------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHH
Confidence 2356677777777777 5554666 4667776663 1234567777777777777 5788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHH
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEPN-SQCCNILLQAC 443 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~-~~~~~~ll~~~ 443 (850)
|++.+.++ +.. ..+...+..+...|.+.| .+++|+.+|+++ .+. .|. ...|..+...+
T Consensus 295 a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 295 LLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 88888777 332 335677888888887764 258888888887 543 343 33455554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-11 Score=130.34 Aligned_cols=319 Identities=14% Similarity=0.011 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..|+++++.. |..... ....+......+...|++++|+..|+++.+..-... .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT--LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence 5667788999999999999999999999984 332111 122333445566789999999999999875411111 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.+....++...+..+...|++++|+..+++.+... +.. ++.. ....++..+...
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------------~~~~----------~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL--------------NDKV----------GEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------TCHH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------cccc----------chHHHHHHHHHH
Confidence 22234566667777788899999999988876532 100 0000 001456778888
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|...|+ +++|+..|++..+. +..+ ...++..+...|...|++++|...|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888 88888888776542 1112 2457888889999999999999999876532
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CH
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~ 363 (850)
... .+. .....++..+...|...|++++|...|++...........+ ..
T Consensus 217 --------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 217 --------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp --------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 111 110 01134777888899999999999999998876532221111 15
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NS 433 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 433 (850)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++..+. +..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57888888999999999999999887653111 12 557888889999999999999999987753 2111 23
Q ss_pred HHHHHHHHHHHHhCCHH
Q 003082 434 QCCNILLQACVEACQFD 450 (850)
Q Consensus 434 ~~~~~ll~~~~~~g~~~ 450 (850)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 45666777777777653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-10 Score=115.25 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---- 375 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~---- 375 (850)
++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 93 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 93 NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHcCCCC
Confidence 4444444444444433 44555555555655 66666666666665541 134455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hC
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----AC 447 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g 447 (850)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+
T Consensus 163 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccc
Confidence 666666666666666543 44555666666666 666666666666666543 24455555666666 66
Q ss_pred CHHHHHHHHHHHhhccc
Q 003082 448 QFDRAFRLFRSWTLSKT 464 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~ 464 (850)
++++|.+.|+...+.+.
T Consensus 237 ~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66666666666555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=113.14 Aligned_cols=167 Identities=7% Similarity=-0.161 Sum_probs=98.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
.++..++..|...|++++|+..|+++.+.. +.+..++..+...|... |++++|...|+.+.+
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---------------- 105 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---------------- 105 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----------------
Confidence 344444455555555555555555554432 12344455555555555 555555555554443
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
.+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++
T Consensus 106 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 106 -----------------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp -----------------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCH
T ss_pred -----------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 11122 2456666777777777777777777777653 123456677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777766543135666666667777777777777777777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-11 Score=131.77 Aligned_cols=277 Identities=14% Similarity=0.022 Sum_probs=184.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHcCCChHHHHHHhhhC----------CCC
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACIV----------PRA 220 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~----------p~~ 220 (850)
...+...+..+...|++++|+..+++.++.. |++. ..+..++..+...|++++|+.+++.+ +..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445556667778999999999999998864 5443 34556666667777777776665442 111
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGD-----------------YMKSRAI 278 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~-----------------~~~A~~~ 278 (850)
..++..+...|...|++++|+..|++..+. +..+ ...++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 244556666666677777776666665542 1111 23355666666666666 5555544
Q ss_pred HHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 279 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
|++.. +++... +- .....++..+...|...|++++|...|++..+.....
T Consensus 206 ~~~al--------------------------~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 206 YQENL--------------------------KLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH--------------------------HHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44322 222221 11 1124577888899999999999999999887753221
Q ss_pred C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Q 003082 358 V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--- 428 (850)
Q Consensus 358 ~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--- 428 (850)
. ......+|..+...|...|++++|...+++..+.... ....++..+...|...|++++|...|++..+..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 0 0111237888889999999999999999887653211 114678888999999999999999999887631
Q ss_pred -C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 429 -C-EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 429 -~-~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
. .....++..+...|.+.|++++|.+.|++....
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 111346788889999999999999999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-09 Score=111.49 Aligned_cols=222 Identities=15% Similarity=0.051 Sum_probs=190.0
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003082 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRT 261 (850)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 261 (850)
|.++..+..++..+...|++++|+.+|+.. +.+..++..+...|.. .+++++|+..|++..+.+ +..++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 455667888999999999999999999775 6666888999999999 999999999999999875 7888999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 262 IIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (850)
Q Consensus 262 li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~----~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 331 (850)
+...|.. .+++++|+..|+...+.+ +...+..+-. .. .++.++|++.|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 9999999 999999999999999876 4444444433 33 679999999999999876 677888898
Q ss_pred HHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 332 KACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 332 ~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
..|.. .+++++|...|+...+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 99998 99999999999998762 356778888889999 999999999999999875 3678888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003082 404 LINACAN----AGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 404 li~~~~~----~g~~~~A~~l~~~m~~~g 428 (850)
+...|.+ .+++++|...|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899998 999999999999998875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-11 Score=125.05 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..|+++++.. |.... .....+......+...|++++|+..|+++.+...... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 4455667888899999999999999999884 33211 1122334445567789999999999998875311100 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+.......+ ... ...++..+...
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~----------~~~~~~~l~~~ 132 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KVG----------EARALYNLGNV 132 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHH----------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------chH----------HHHHHHHHHHH
Confidence 1222455666677777889999999988876543211000 000 01456677788
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|...|+ +++|+..|++.... +..+ ...++..+...|...|++++|...|++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888 88888888766542 1112 2446888888899999999999998876532
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcc-cCHh
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVF 364 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~-~d~~ 364 (850)
..... .......++..+...+...|++++|...+++........... ....
T Consensus 213 --------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 213 --------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp --------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 11110 001123467778888889999999999988877643221101 1144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG----VT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++..+...|...|++++|...+++..+.. -. ....++..+...|.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56666777777777777777777665321 00 0123455566666666666666666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-11 Score=132.53 Aligned_cols=296 Identities=14% Similarity=0.014 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++.. |..... ....+......+...|++++|+..|+++.+...... .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT--LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--D 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc--C
Confidence 5666688899999999999999999999984 332211 112333444566789999999999999875411111 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+...... ++. +....++..+...
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHHH
Confidence 22335566677777888999999999998876532000 000 0011455667777
Q ss_pred HHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 231 FGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 231 ~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
|...|+ +++|+..|++..+. +..+ ...++..+...|...|++++|+..|++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777777 77777777665442 1112 2346777888888888888888888887643100
Q ss_pred -cCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cccCHhHH
Q 003082 289 -LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTY 366 (850)
Q Consensus 289 -pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~~d~~ty 366 (850)
.+.. ....++..+...|...|++++|...|++......... ......++
T Consensus 256 ~~~~~-----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 256 FGDRA-----------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp HTCHH-----------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcH-----------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000 0134455666666677777777777766665432210 11124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAG----V-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
..+...|...|++++|...+++..... . .....++..+...|.+.|++++|...|++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777777777777777777777665421 0 011346777778888888888888888887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.3e-10 Score=112.28 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|.+.|+++.+. .+.+...|..+...|...|++++|...++++.+.... +...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 455666667777777777777777776653 1234556666667777777777777777776655322 5566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 482 (850)
+...|...|++++|...|+++.+.+..| +...+..+...|.+.|++++|.+.|+......
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------- 171 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------- 171 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 6677777777777777777666522233 33455666666666666666666665543210
Q ss_pred hhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003082 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (850)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 562 (850)
+.+...+..+...|.+.|
T Consensus 172 --------------------------------------------------------------~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 172 --------------------------------------------------------------RNQPSVALEMADLLYKER 189 (252)
T ss_dssp --------------------------------------------------------------SCCHHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------------cccHHHHHHHHHHHHHcC
Confidence 123456666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 563 ~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
++++|...++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777776642 34566677777777777777777777777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=127.34 Aligned_cols=275 Identities=15% Similarity=0.034 Sum_probs=184.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C---CCcc
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADI 222 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p---~~~~ 222 (850)
.+...+..+...|++++|+..+++.++.. |.+ ...+..++..+...|++++|+.+++.+ . ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34555666778999999999999988764 444 234556666777777777777665542 1 1124
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P----NMYICRTIIDVCGICGD--------------------YMKSRA 277 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~~~~~li~~~~~~g~--------------------~~~A~~ 277 (850)
++..++..|...|++++|+..|++..+.... + ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4556666667777777777666665542100 1 13355666666666666 555555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 003082 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (850)
Q Consensus 278 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~ 356 (850)
.|++.. +++.. .+.. ....++..+...|...|++++|...|++..+....
T Consensus 169 ~~~~al--------------------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 169 FYEENL--------------------------SLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHHHH--------------------------HHHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------------HHHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 554432 11111 1111 12457888889999999999999999988875433
Q ss_pred CCc-ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Q 003082 357 GVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC- 429 (850)
Q Consensus 357 g~~-~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~- 429 (850)
... .....+|..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+..-
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 211 111347888899999999999999999988643111 12 56788899999999999999999998876411
Q ss_pred CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 430 EPN----SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 430 ~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+ ..++..+...|.+.|++++|.+.+++....
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 456788889999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=123.56 Aligned_cols=274 Identities=14% Similarity=0.042 Sum_probs=180.1
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C---CCcch
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADIL 223 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p---~~~~~ 223 (850)
+...+..+...|++++|+..++++++.. |++ ...+..++..+...|++++|+.+++.. + ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344556678899999999999988764 444 234555666666677777776665442 1 11234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD--------------------YMKSRAI 278 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 278 (850)
+..++..|...|++++|+..|++..+.... ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 555666666666666666666655432100 11 2255555566666666 5555544
Q ss_pred HHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 279 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
+++.. +++... +. .....++..+...+...|++++|.+.|++..+.....
T Consensus 166 ~~~a~--------------------------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 166 YEENL--------------------------SLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHH--------------------------HHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44332 111111 11 1124577888899999999999999999887653221
Q ss_pred C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 003082 358 V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (850)
Q Consensus 358 ~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~---- 427 (850)
. ......++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 1112347888889999999999999999987643111 12 557888889999999999999999988763
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 428 GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 428 g~~-p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.. ....++..+...|.+.|++++|.+.+++....
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346778899999999999999999987654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-09 Score=116.49 Aligned_cols=345 Identities=12% Similarity=0.033 Sum_probs=161.3
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCCh---HHHHHHhhhCC-CCcchHHHHHHHHHhcC---
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVP-RADILFCNFVREFGKKR--- 235 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~p-~~~~~~~~li~~~~~~g--- 235 (850)
..+.+.|++++|++.|++..+.+ ++..+..++..|...|++ ++|+.+|+..- .+..++..|...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 34456799999999999987754 344556677777777777 77777776642 24456666776555554
Q ss_pred --ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCcCHHHHHHHHHhhcC----ChH
Q 003082 236 --DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306 (850)
Q Consensus 236 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~ 306 (850)
++++|+..|+...+.|. ++ .+..|...|...+... ++.+.+......|. +........+....+ +.+
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHH
Confidence 66778888877777553 22 5556666665554332 23333333333332 222222222222222 222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc----CCH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWW 379 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g---~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~----g~~ 379 (850)
.+..+++.... .+...+..|...|.+.| +.++|.+.|+...+ .| .++...+..|...|... +++
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 22222222211 12224444444455555 44455555444443 11 22333223333333322 345
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
++|...|++.. .| +...+..|... + ...+++++|..+|++..+.| +...+..|-..|. .|.
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~-------- 297 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK-------- 297 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS--------
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC--------
Confidence 55555555443 21 23333333333 1 23445555555555544443 3333333333333 220
Q ss_pred HHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHH
Q 003082 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM 536 (850)
Q Consensus 457 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~ 536 (850)
|+ -++.++|...|
T Consensus 298 -----------------------------------------------------g~--------------~~d~~~A~~~~ 310 (452)
T 3e4b_A 298 -----------------------------------------------------WV--------------PADAKAAEAHF 310 (452)
T ss_dssp -----------------------------------------------------SS--------------CCCHHHHHHHH
T ss_pred -----------------------------------------------------CC--------------CCCHHHHHHHH
Confidence 00 01344555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003082 537 NEMRTVGLSPNHISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEE 608 (850)
Q Consensus 537 ~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~ 608 (850)
+... .-+...+..|...|.. ..+.++|..+|++..+.|. ...+..|...|.. ..+.++|..+|+.
T Consensus 311 ~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 5444 2244555556666655 3488999999999888763 3345556666653 4588999999998
Q ss_pred HHHCCC
Q 003082 609 MKHYQI 614 (850)
Q Consensus 609 m~~~g~ 614 (850)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=116.98 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=98.9
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+...|++++|+..++++++.. |+.. .++..++..|...|++
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~------------------------------~~~~~la~~~~~~~~~ 73 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDA------------------------------IPYINFANLLSSVNEL 73 (243)
T ss_dssp ----------------CCTTHHHHHTTC--TTCH------------------------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccH------------------------------HHHHHHHHHHHHcCCH
Confidence 4444555566777888887777776543 4333 4455566666666667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
++|+..|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 74 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------------- 121 (243)
T 2q7f_A 74 ERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------------------------------- 121 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------------
Confidence 77777766666542 2355666666666777777777777776665431
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
+.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...|...|++++|...|+++.+... .+
T Consensus 122 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 192 (243)
T 2q7f_A 122 ---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GH 192 (243)
T ss_dssp ---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TC
T ss_pred ---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence 112333444444555555555555555554442 122344445555555555555555555555544321 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
..++..+...|.+.|++++|...|+++.+.
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 445555555555555555555555555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-09 Score=118.89 Aligned_cols=344 Identities=10% Similarity=-0.055 Sum_probs=221.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCch---hHHHHHHHHHHHcCCCCccccc
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..++..+.+.|++++|+.+|+++.+.+ ++..... + +. .+...|+. ++|+..|+++.+. .|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~---L---g~---~y~~~g~~~d~~~A~~~~~~A~~~--~~~A--- 71 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSEAQVG---L---AD---IQVGTRDPAQIKQAEATYRAAADT--SPRA--- 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGT---C---C---------------------------------C---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHH---H---HH---HHHccCCCCCHHHHHHHHHHHHhC--CHHH---
Confidence 357888899999999999999998876 3332211 1 11 12245777 9999999999853 3322
Q ss_pred hhhhHHHHHHHHhhhhcC-----cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH---HHHHhhhC--CCCc
Q 003082 152 GSGFKLLKNECQRLLDSG-----EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL---AIRYACIV--PRAD 221 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~--p~~~ 221 (850)
...++..+...| ++++|+..|++..+.+ .......++..|...+.... +...+... +...
T Consensus 72 ------~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~ 141 (452)
T 3e4b_A 72 ------QARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP 141 (452)
T ss_dssp ------HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT
T ss_pred ------HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH
Confidence 223333222333 8899999999988754 44578899999987665443 33333332 3345
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll 298 (850)
.+...|...|...+.++++......+.+.-...+...+..|...|.+.| ++++|+..|+...+.|. ++...+..|-
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 7888999999999866555544332222111123338888999999999 99999999999998874 4444322222
Q ss_pred Hhh------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHH
Q 003082 299 NVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (850)
Q Consensus 299 ~~~------~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~--~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~l 369 (850)
..+ .++.++|++.|++.. .| +...+..|-.. + ...++.++|.+.|++..+ . -+...+..|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~----g~~~A~~~L 289 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---A----DQPRAELLL 289 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---T----TCHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---C----CCHHHHHHH
Confidence 222 258899999999987 44 56666677666 3 468999999999998875 2 266677777
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 370 VKVFADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (850)
Q Consensus 370 i~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll 440 (850)
-..|. .| ++++|...|++.. .| +...+..|...|.. ..+.++|..+|+...+.|. ......|-
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 77776 55 9999999999877 33 67778888777766 3489999999999988773 33455555
Q ss_pred HHHHH----hCCHHHHHHHHHHHhhcc
Q 003082 441 QACVE----ACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 441 ~~~~~----~g~~~~A~~l~~~m~~~~ 463 (850)
..|.. ..+.++|...|+.....+
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 55553 358889999988776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-10 Score=113.74 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=155.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..+...|++++|+..|+++.+.. +.+..++..+...|...|++++|+..|+++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 567778888999999999999999998853 2467888899999999999999999998876431
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
+.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|++++
T Consensus 88 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 88 -------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred -------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHH
Confidence 236777888899999999999999999999874 24467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
|...++++.+... .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++....
T Consensus 144 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999987643 378889999999999999999999999998874 45678899999999999999999999998876
Q ss_pred cc
Q 003082 462 SK 463 (850)
Q Consensus 462 ~~ 463 (850)
..
T Consensus 222 ~~ 223 (243)
T 2q7f_A 222 IQ 223 (243)
T ss_dssp HC
T ss_pred cC
Confidence 53
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-10 Score=115.33 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=150.5
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCG 267 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~ 267 (850)
+...+..+...|++++|+.+++.+ |.+..++..++..|...|++++|+..|+...+....+ ...+|..+...|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444555555555555555555432 4444455555555555555555555555555522111 1223555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
..|++++|+..|+... +.. +.+..++..+...|...|++++|...|
T Consensus 86 ~~~~~~~A~~~~~~a~---------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAV---------------------------------DRD-TTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp HTTCHHHHHHHHHHHH---------------------------------HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHH---------------------------------hcC-cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555555555555544 332 335678888999999999999999999
Q ss_pred HHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 003082 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEM 424 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m 424 (850)
++..+. .+.+...|..+...+...+++++|...|++..+.... +...+..+...+...|+ +++|...|++.
T Consensus 132 ~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 132 EKQIRP-----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp GGGCCS-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHhhc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 887652 2334566666663444556999999999999876432 57788888888888888 88888888888
Q ss_pred HHcC-CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 425 LQAG-CEPN------SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 425 ~~~g-~~p~------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
.+.. -.|+ ..+|..+...|.+.|++++|.+.|+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7642 1233 2567888889999999999999999887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-10 Score=121.73 Aligned_cols=172 Identities=5% Similarity=-0.024 Sum_probs=81.7
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCh-hhHhhhhHHHHHHHHHHHhhhcCchhHHH-----------HHHHHHHHcCCCCc
Q 003082 80 KLAKDGRLEEFAMIVESVVVSEGNV-SKFASMLSLEMVASGIVKSIREGRIDCVV-----------GVLKKLNELGVAPL 147 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-----------~~l~~~~~~~~~p~ 147 (850)
...+.+++++|..+++++...-... .....++-..++. .+.....+.++.+. +.++++... |.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~--~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~ 95 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLME--FRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QA 95 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH--HHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---TH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH--HHHHHHHhhcCcccccccccccchhhHHHHHHhc---CC
Confidence 3578899999999999997653221 1111111011110 11111223333333 666665432 11
Q ss_pred cccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHH
Q 003082 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (850)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~ 226 (850)
.......+-.+...+..+...|++++|+..+++.+..... ++... ...++..
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~a~~~~~ 148 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------KAEFFFK 148 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------HHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------HHHHHHH
Confidence 1000000112222455567889999999999988764211 11100 0133444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
++..|...|++++|+..|++..+... .+ ...+++.+..+|...|++++|+..|++..
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555555555555554433200 01 12345555555666666666666555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=120.13 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=127.7
Q ss_pred cchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC---
Q 003082 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV--- 144 (850)
Q Consensus 68 ~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--- 144 (850)
......+..++..+...|++++|+..|+++++................+......+...|++++|+..|+++.+..-
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33488999999999999999999999999988521100000111123334445567789999999999999986410
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC------CCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (850)
.++ .+....++...+..+...|++++|+..+++.+.. +..+.....+..++..+...|++++|+.+++.+
T Consensus 104 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 104 GKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 011 1223556667777888999999999999998765 223444556777888889999999998887653
Q ss_pred --------CCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 218 --------PRA---DILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 218 --------p~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+.. ..++..++..|...|++++|...|+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 24567788889999999999999888775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-10 Score=123.09 Aligned_cols=209 Identities=13% Similarity=-0.036 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCCh-HHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV-NLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
+++++..++...... +.....+..++..+...|++ ++|+.+|+. -|.+..++..++..|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555444322 44444455555555555555 555554433 24455677778888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGIC---------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~ 316 (850)
+.++.. |+..++..+..+|... |++++|+..|++..+.
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------------- 208 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM------------------------------- 208 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------------------------------
Confidence 887753 5567777777777777 6677776666665532
Q ss_pred HcCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHhhhcCCccc----CHhHHHHHHHHHHhcCCHHHHHH
Q 003082 317 KLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~--------g~~~~A~~i~~~m~~~~~~g~~~~----d~~ty~~li~~~~~~g~~~~A~~ 384 (850)
. +.+...|..+..+|... |++++|.+.|++..+. .| +...|..+...|...|++++|..
T Consensus 209 --~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 209 --D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp --C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 33567777888888887 8899999999998874 34 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 385 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
.|++..+.... +...+..+...+...|++++|...+..+
T Consensus 280 ~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998876533 5677888888888888888888765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-07 Score=107.38 Aligned_cols=75 Identities=5% Similarity=-0.094 Sum_probs=57.1
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc---hhHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVGV 135 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~ 135 (850)
+.+++..+|.+ ...|..++..+.+.+.++.|..+|++++.. .|..+.....+ . ..-.+.|. ++.+..+
T Consensus 55 lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Y---i---~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 55 LNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMR---L---SLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH---H---HHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHH---H---HHHHhhCCcchHHHHHHH
Confidence 44578889987 999999999999999999999999999998 55554443322 1 12236677 9999999
Q ss_pred HHHHHHc
Q 003082 136 LKKLNEL 142 (850)
Q Consensus 136 l~~~~~~ 142 (850)
|++++..
T Consensus 126 feRal~~ 132 (679)
T 4e6h_A 126 LARCLSK 132 (679)
T ss_dssp HHHHTCS
T ss_pred HHHHHHh
Confidence 9999953
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-10 Score=107.70 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..+|..++..+...|++++|+..|+++++. +|...... ......+...|++++|+..+.++... .|+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~-- 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETL------LKLGKTYMDIGLPNDAIESLKKFVVL--DTTS-- 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHhc--Cchh--
Confidence 678889999999999999999999999988 56543332 22334556889999999999988844 4543
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
...+...+..+...+++++|...+++..... |+.. .++..++..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~------------------------------~~~~~lg~~ 116 (184)
T 3vtx_A 73 ----AEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYA------------------------------DAYYKLGLV 116 (184)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch------------------------------HHHHHHHHH
Confidence 3344445555667788888888888776654 4443 444555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.+.|++++|++.|++.++..+ .+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666666666666666655421 34555666666666666666666666666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-10 Score=116.18 Aligned_cols=240 Identities=10% Similarity=0.005 Sum_probs=153.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 288 (850)
.++..++..|...|++++|+.+|+++.+. .......++..+...|...|++++|...|++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66778899999999999999999988773 22235667899999999999999999999988754 222
Q ss_pred cC-HHHHHHHHHh--hcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC-
Q 003082 289 LN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (850)
Q Consensus 289 pd-~~t~~~ll~~--~~~~~~~a~~l~~~m~~~------g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g- 357 (850)
|+ ..++..+-.. ..|++++|.+.|++..+. +-.| ....+..+...+...|++++|.+.|+++.+.....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22 3344444443 346888888888887664 2222 34567777888888888888888888887753221
Q ss_pred -C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 003082 358 -V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 358 -~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~-------ty~~li~~~~~~g~~~~A~~l~ 421 (850)
. ......++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0 1122446777778888888888888888887752 1111111 1222222333344444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
....... ..+..++..+...|.+.|++++|.+.|++....
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5554331 334567888999999999999999999987643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.3e-10 Score=105.52 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=112.1
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~ 232 (850)
++.+++..+...|++++|+..|++.++.. |+....+..++..+...|++++|+..+.. .|....++..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 33444444445555555555555554443 44455555555555555555555554433 2455567778888999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~ 310 (850)
..++++.|...+....+.. +.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+-.+ ..|++++|++
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988753 2467889999999999999999999999998763 2244555555444 4689999999
Q ss_pred HHHHHHHcCCCCCHHHH
Q 003082 311 VYKNMQKLGVMADMASY 327 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~ 327 (850)
.|++.++. .|+...|
T Consensus 163 ~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 163 YFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHT--THHHHHH
T ss_pred HHHHHHhC--CccCHHH
Confidence 99999875 3544333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-09 Score=114.77 Aligned_cols=330 Identities=10% Similarity=-0.005 Sum_probs=155.5
Q ss_pred hhHHHHHHHHH--hhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHH---------HHHHHH
Q 003082 71 NDYYADMASKL--AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV---------GVLKKL 139 (850)
Q Consensus 71 ~~~~~~l~~~l--~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~---------~~l~~~ 139 (850)
..+-..+-+.| ...+++++|..+++++............++....+.. ++.....+.++.+. +.++.+
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~-~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMC-FRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHH-HHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHHhhcCcccccccccchHHHHHHH
Confidence 34444455555 8889999999999998765322111111111111100 01111112222222 555555
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.......+. ...+-.+...+..+...|++++|+..+++.........+. . .
T Consensus 89 ~~~~~~~~~---~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~-------------~----------- 139 (378)
T 3q15_A 89 ETPQKKLTG---LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--I-------------E----------- 139 (378)
T ss_dssp HGGGHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--H-------------H-----------
T ss_pred hccCCCCcc---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--H-------------H-----------
Confidence 422111111 1111123334455667888899988888876542111110 0 0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHL----S-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 293 (850)
...++..++..|...|+++.|+..|++..+.. . .+ ...+++.+..+|...|++++|.+.|++..+.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------- 211 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------- 211 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------
Confidence 01345556666666666666666666554321 0 11 2345666666777777777777777665421
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 294 ~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
.... +-. ....+++.+...|...|++++|.+.|++..........+....++..+...
T Consensus 212 ------------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 212 ------------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp ------------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 1110 000 112344445555555555555555555544432211122224455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003082 373 FADAKWWQMALKVKEDMLSAG----VTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACV 444 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~ 444 (850)
|.+.|++++|...+++..+.. -......+..+...+...++ +++|+..+++ .+..++ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 555555555555555554321 11112233444444444455 4444444443 111222 123445556666
Q ss_pred HhCCHHHHHHHHHHHhhc
Q 003082 445 EACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~ 462 (850)
+.|++++|.+.|+.....
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666655443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-09 Score=108.22 Aligned_cols=222 Identities=14% Similarity=0.083 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh-------HHHHHHH
Q 003082 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-------VSALRAY 244 (850)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~-------~~A~~~~ 244 (850)
++|+..|++.+... |..+..|...+..+...+ ..+.+.|++ ++|+.+|
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~-----------------------~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSS-----------------------KLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHH-----------------------HHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhc-----------------------hhhhhccchhhcccchHHHHHHH
Confidence 57778888877654 666655655554443210 001234554 6777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHhh--cCChHHHHHHHHHHHHcCC
Q 003082 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMNVN--AHDLKFTLEVYKNMQKLGV 320 (850)
Q Consensus 245 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~ 320 (850)
++.++.-.+.+...|..++..+.+.|++++|..+|++..+. .|+. ..|..+.... .|++++|..+|++..+.+
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 77766212234556777777777777777777777776653 2221 1222222221 123333333333333322
Q ss_pred CCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--
Q 003082 321 MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTP-- 396 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~-~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-- 396 (850)
+.+...|........ ..|+.++|..+|+...+. .+-+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 112222222211111 135555555555555442 12234445555555555555555555555555532 222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
....|..++....+.|+.+.|..+++++.+
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234455555555555555555555555554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-09 Score=114.65 Aligned_cols=302 Identities=10% Similarity=0.067 Sum_probs=189.8
Q ss_pred HHhcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHH--HhcCCHHHHH-----------HHHHHHHhCCCCcCHH-
Q 003082 231 FGKKRDLVSALRAYDASKKHL--S--SPNMYICRTIIDVC--GICGDYMKSR-----------AIYEDLRSQNVTLNIY- 292 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g--~--~p~~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~~- 292 (850)
+.+.+++++|..+++++.+.. . .++...|-.++..- ...+.++.+. +.++.+.......+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345778888888887765531 1 23344444444321 1123333344 5555554321111110
Q ss_pred H-H----HHHHHhhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc--c
Q 003082 293 V-F----NSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (850)
Q Consensus 293 t-~----~~ll~~~~~~~~~a~~l~~~m~~~----g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~--~ 360 (850)
. | ...+....|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+.+..+......- .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 0 1 122223457888888888887653 1111 2457888888999999999999999888875433210 1
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-C
Q 003082 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~ 430 (850)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12457788888899999999999999887643111 11 247888888999999999999999988762 22 3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccC
Q 003082 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (850)
Q Consensus 431 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (850)
....++..+...|.+.|++++|.+.+++....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 293 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY------------------------------------------------ 293 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------------------------------------
Confidence 34567888888999999999999988765422
Q ss_pred CCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 003082 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (850)
Q Consensus 511 ~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ty 586 (850)
.... +-......+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 294 -------------------------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 294 -------------------------SQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp -------------------------HHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred -------------------------HHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 1110 001112235567777778887 66666666655 22333 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 587 ~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
..+...|...|++++|.+.|++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-08 Score=109.02 Aligned_cols=290 Identities=13% Similarity=0.000 Sum_probs=153.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
.......+..+...|++++|+..+++.+......... .....+......+...|++++|...++++.+. .|..-.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 88 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHhcCc
Confidence 3445556677788999999999999998864221111 11122333334566889999999999998854 221111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+.......... .|....++..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 111233445566677789999999999988765321000000 00011345566777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHH-----HH--
Q 003082 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM-- 298 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~-----ll-- 298 (850)
|...|++++|...+++....... ....++..+...+...|++++|...+++.....-.++ ...+.. ..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77778888888877776653221 1234567777777788888888888777654211110 001111 11
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHHHHHHHHHH
Q 003082 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (850)
Q Consensus 299 ~~~~~~~~~a~~l~~~m~~~g~~p---d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty~~li~~~~ 374 (850)
....|+.+.|...+++.......+ ....+..+...+...|++++|...++.........+..++. ..+..+...+.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 112345555555554443322111 01234445555556666666666665554432111111111 13333334444
Q ss_pred hcCCHHHHHHHHHHH
Q 003082 375 DAKWWQMALKVKEDM 389 (850)
Q Consensus 375 ~~g~~~~A~~l~~~m 389 (850)
..|+.++|...+++.
T Consensus 305 ~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 455555555544444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-10 Score=129.93 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=118.1
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
.|+. ..+|..|+..|.+.|++++|+..|+++++. +|+.... +.+....+.+.|++++|++.|+++++ +.
T Consensus 5 ~P~~-a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a------~~nLg~~l~~~g~~~eA~~~~~~Al~--l~ 73 (723)
T 4gyw_A 5 CPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAA------HSNLASVLQQQGKLQEALMHYKEAIR--IS 73 (723)
T ss_dssp -CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 3454 788889999999999999999999999988 5554332 22333445688999999999999884 46
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
|+. .+++.+++..+.+.|++++|++.|++.++.. |+.. .+++
T Consensus 74 P~~------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~------------------------------~a~~ 115 (723)
T 4gyw_A 74 PTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFA------------------------------DAHS 115 (723)
T ss_dssp TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHH
T ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------------------------HHHH
Confidence 765 5667777777888899999998888877654 5443 4556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+++..|.+.|++++|++.|++.++..+ -+...|..+..+|...|++++|.+.|++..+
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666666665421 2455666666666666766666666666543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-08 Score=105.69 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=160.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCc-CHHHHHHHHHhh--c
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCG-------ICGDY-------MKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--A 302 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~--~ 302 (850)
|+.+|++.+... +.+...|..++..+. +.|++ ++|..+|++..+. +.| +...|..+...+ .
T Consensus 35 a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 35 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhc
Confidence 445555555431 235556666665554 35775 9999999999873 134 455677776653 5
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHH-HhcCCH
Q 003082 303 HDLKFTLEVYKNMQKLGVMAD-MA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKWW 379 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd-~~-t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~-~~~g~~ 379 (850)
|+++.|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+. .+.+...|....... ...|++
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCTHHHHHHHHHHHHTSCCH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHcCCH
Confidence 7999999999999985 444 43 8999999999999999999999998862 123344454333332 237999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
++|..+|+...+.... +...|..++..+.+.|++++|..+|+...+.. +.| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999876433 68899999999999999999999999999863 454 4668888999999999999999999
Q ss_pred HHHhhcc
Q 003082 457 RSWTLSK 463 (850)
Q Consensus 457 ~~m~~~~ 463 (850)
+++....
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-06 Score=97.95 Aligned_cols=441 Identities=10% Similarity=0.063 Sum_probs=283.5
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC---hHHHHHHHHHH
Q 003082 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYDAS 247 (850)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 247 (850)
+..|++.+... |.+...|..++..+.+.+.++.+..+|+. +|.....|..-+..-.+.|+ ++.+..+|++.
T Consensus 52 i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 34445554444 77888899999999888899888877655 58888888888888888888 99999999999
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CcC-HHHHHHHHHhhc-----------CC
Q 003082 248 KKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRS-QNV-TLN-IYVFNSLMNVNA-----------HD 304 (850)
Q Consensus 248 ~~~g~-~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~ll~~~~-----------~~ 304 (850)
+.... .|++..|..-+....+.++. +...++|+.... .|. .++ ...|...+.... ++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 88641 37888888877765555543 344577877654 466 554 467777776421 24
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhhhcCC---cc--------
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK-------- 360 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~-------------~g~~~~A~~i~~~m~~~~~~g~---~~-------- 360 (850)
.+.+..+|++.+......-..+|......--. ..+++.|...+.++..... +. ++
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccchh
Confidence 56688888888753221112333222111111 1233445555655444321 10 00
Q ss_pred ---c-----C---HhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q 003082 361 ---L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-HLF 421 (850)
Q Consensus 361 ---~-----d---~~ty~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~-~l~ 421 (850)
| + ...|...+.---..+ ..+.+..+|++.+... .-+...|-..+..+.+.|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 134555554332222 1344567888888653 337888888888888999999997 999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCc
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (850)
+..... ++.+...+-..+...-+.|++++|.++|+.+....... ......
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~----------------- 417 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME----------------- 417 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH-----------------
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh-----------------
Confidence 999875 45566667778888889999999999999887531000 000000
Q ss_pred ccccccccCCCc------------CHHHHHHHHHHHh--ccHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcC-CCH
Q 003082 502 YSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-G-LSPNHISWTILIDACGGS-GNV 564 (850)
Q Consensus 502 ~~~~~~~~~~~p------------~~~t~~~li~~~~--~~~~~a~~l~~~m~~~-g-~~p~~~ty~~li~~~~~~-g~~ 564 (850)
-.| ....|...+.... ++.+.|..+|....+. + ..+...+..+.+. .+. ++.
T Consensus 418 ---------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~ 486 (679)
T 4e6h_A 418 ---------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDT 486 (679)
T ss_dssp ---------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCC
T ss_pred ---------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCH
Confidence 002 1223444444433 4678999999999875 2 2233334344443 344 559
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003082 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLA 642 (850)
Q Consensus 565 ~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~a~~~~g~~~~a~~a~~ 642 (850)
+.|..+|+...+. +.-+...|...++-....|+.+.|..+|++.....-.+ ....|...++--.+.|+.+. +..
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~---~~~ 562 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS---VRT 562 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH---HHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH---HHH
Confidence 9999999999875 34466777888888888999999999999998753222 45788888888889999777 556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 643 VYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 643 l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
+.++|.+.- |+......+++-|
T Consensus 563 v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhC--CCCcHHHHHHHHh
Confidence 777887654 3333444455544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-09 Score=118.07 Aligned_cols=201 Identities=9% Similarity=-0.082 Sum_probs=162.2
Q ss_pred CCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
|.....+..++..|...|++ ++|+..|++.++..+ .+..+|..+..+|.+.|++++|.+.|+...+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 166 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----------- 166 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------
Confidence 44557778888888888898 999998888887532 35778888888888888888888888887754
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~---------g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
.|+...+..+...|... |++++|.+.|++..+. .+.+...|.
T Consensus 167 ------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 217 (474)
T 4abn_A 167 ------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWY 217 (474)
T ss_dssp ------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 24455556666666666 9999999999999874 234577899
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 368 TIVKVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 368 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.+...|... |++++|...|++..+.... -+...|..+...|...|++++|...|++..+.. +-+...+.
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 999999998 9999999999999986431 378999999999999999999999999998864 44566788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Q 003082 438 ILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.+...+...|++++|.+.+..+.
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999998665443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-08 Score=107.30 Aligned_cols=272 Identities=11% Similarity=-0.024 Sum_probs=160.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
+..+...|++++|...+++.+... +.+.. .. . ..+++.+...|...|++++|.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~--~~~~~-~~-~-----------------------~~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL--PPGWF-YS-R-----------------------IVATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCH-HH-H-----------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--CCCch-hH-H-----------------------HHHHHHHHHHHHhcCcHHHHH
Confidence 444557899999999999887654 22211 00 0 023334445555555555555
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--cCH-HHHHHHHH--hhcCChHH
Q 003082 242 RAYDASKKHLSS-PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVT--LNI-YVFNSLMN--VNAHDLKF 307 (850)
Q Consensus 242 ~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--pd~-~t~~~ll~--~~~~~~~~ 307 (850)
..+++....... .+ ..++..+...+...|++++|...+++..+. +.. |.. ..+..+-. ...|++++
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 555554432100 11 122444555555566666666655554431 111 111 11221211 23356666
Q ss_pred HHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH----HHHHHHHhcCCH
Q 003082 308 TLEVYKNMQKLGV----MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWW 379 (850)
Q Consensus 308 a~~l~~~m~~~g~----~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~----~li~~~~~~g~~ 379 (850)
|...+++.....- .....++..+...+...|++++|...+++.......... + ..... ..+..+...|++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-H-SDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-C-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-c-hhHHHHHHHHHHHHHHHCCCH
Confidence 6666555544221 112356778888899999999999999988765322111 1 11111 233447789999
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHhCCHHH
Q 003082 380 QMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPNS-QCCNILLQACVEACQFDR 451 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~ 451 (850)
++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 99999998876543221 1335677888999999999999999987653 222222 256667788889999999
Q ss_pred HHHHHHHHhhc
Q 003082 452 AFRLFRSWTLS 462 (850)
Q Consensus 452 A~~l~~~m~~~ 462 (850)
|...+++....
T Consensus 312 A~~~l~~al~~ 322 (373)
T 1hz4_A 312 AQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=124.55 Aligned_cols=152 Identities=13% Similarity=0.046 Sum_probs=100.9
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~ 236 (850)
++..+.++|++++|++.|++.++.. |+....++.++.+|.+.|++++|+..|++ -|....+|++++..|.+.|+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3333334444444444444444332 33344444444444444444444444333 24555788899999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHh--hcCChHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYK 313 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~--~~~~~~~a~~l~~ 313 (850)
+++|++.|++.++... -+..+|+.+..+|.+.|++++|++.|++..+. .|+ ...+..+..+ ..+++++|.+.++
T Consensus 93 ~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 93 VQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 9999999999988532 36789999999999999999999999999876 443 5566666555 3478888877777
Q ss_pred HHHH
Q 003082 314 NMQK 317 (850)
Q Consensus 314 ~m~~ 317 (850)
+..+
T Consensus 170 kal~ 173 (723)
T 4gyw_A 170 KLVS 173 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-08 Score=109.19 Aligned_cols=182 Identities=8% Similarity=-0.107 Sum_probs=127.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
++-..+..+...|++++|+..|+++++.... ++. ......+..+...+...|++++|+..++++.+..-..... .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~ 178 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD---IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-S 178 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-H
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-h
Confidence 4455677778999999999999999876321 111 1123344455556779999999999999998642111110 1
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~ 231 (850)
.....++..++..+...|++++|++.+++.+...... ++.. ....++.+++..|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------~~~~----------~~~~~~~~lg~~y 232 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----------------QNDR----------FIAISLLNIANSY 232 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----------------CCHH----------HHHHHHHHHHHHH
Confidence 1234556667777888999999999988776532100 0000 0015677899999
Q ss_pred HhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 232 GKKRDLVSALRAYDASKK-----HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...|++++|+..|++..+ ... ....++..+..+|.+.|++++|...+++..+.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999998876 322 34678889999999999999999999987753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-09 Score=108.16 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=111.5
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC---CCccccchhhhHHHH
Q 003082 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV---APLELFDGSGFKLLK 159 (850)
Q Consensus 83 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~---~p~~~~~~~~~~~l~ 159 (850)
..|++++|+.+|+++++.-..............+......+...|++++|+..|+++.+... .++ .+....++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHH
Confidence 45777888888887776431100000111133344455567799999999999999986510 011 123355677
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhC------CCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---------CCC---c
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---------PRA---D 221 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------p~~---~ 221 (850)
.++..+...|++++|+..+++.+.. ...|.....+..++..+...|++++|+.+++.+ +.. .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 7788888999999999999998765 112445566777888888888988888877553 111 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
.++..++..|.+.|++++|+..|++..+
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788888888888888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-08 Score=92.00 Aligned_cols=163 Identities=9% Similarity=-0.009 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence 44556666666677777777776665532 2345566666666666666666666666554321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
+.+...+..+...+...|++++|.+.|+.+.+. .+.+...+..+...+...|++++|
T Consensus 73 ------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 73 ------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHH
Confidence 223445555556666666666666666665542 123344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 383 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
...+++..+... .+...+..+...+...|++++|...+++..+
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 130 IDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554321 2344555555555555555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=103.15 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCcC-HHHHHHHHHh--hcCChHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNV--NAHDLKFTL 309 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~~--~~~~~~~a~ 309 (850)
+|++++..+.....+....++..+...|...|++++|+..|++..+. +-.|+ ..++..+-.+ ..|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34445544443222235668899999999999999999999987753 11222 2333333333 346777777
Q ss_pred HHHHHHHHcC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC--Cccc-CHhHHHHHHHHHHhcCCH
Q 003082 310 EVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG--VLKL-DVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 310 ~l~~~m~~~g-----~--~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g--~~~~-d~~ty~~li~~~~~~g~~ 379 (850)
+.|.+..... . +....++..+...|...|++++|...|++..+..... .-.| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 7777765531 1 1224566667777777777777777777776642110 0012 244566677777777777
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGL------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 380 ~~A~~l~~~m~~~-------g~~p~-~~ty~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
++|...+++..+. ...+. ...|..+...+...+. +..+...++.... .......++..+...|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 7777777776642 11112 1222222222222222 2222222211110 112233567888999999
Q ss_pred hCCHHHHHHHHHHHhh
Q 003082 446 ACQFDRAFRLFRSWTL 461 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~ 461 (850)
.|++++|...|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-08 Score=94.93 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=115.0
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
...+...|++++|+..|+++. ...|+. ...+...+..+...|++++|+..++++.+.. |+....+..++.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 84 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVY--DADAFD------VDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTC--CTTSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH--HhCccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 334568899999999999888 445543 3445556666778899999999999988764 666667777777
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 275 (850)
.+...|++++|+.+++.+ |.+..++..++..|...|++++|...|+.+.+.. +.+..++..+...+...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888777553 5666677777888888888888888888777653 24566777777888888888888
Q ss_pred HHHHHHHHh
Q 003082 276 RAIYEDLRS 284 (850)
Q Consensus 276 ~~~~~~m~~ 284 (850)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-08 Score=103.91 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=112.7
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCC
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (850)
++.+...|...+..+...|++++|+..|+++++....... .......+..+...+...|++++|+..|+++++. .|
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 3445788999999999999999999999999876321110 0111233445555677999999999999999854 22
Q ss_pred ccccchhhhHHHHHHHHhhhhc-CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
..-.......++.+++..+... |++++|+..|++.++.. |... +... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--------------~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--------------SVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--------------CHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--------------ChHH----------HHHHHH
Confidence 2111112234566667777775 88888888888876542 1110 0000 012344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..|.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666665554322111 1345555555666666666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=101.35 Aligned_cols=194 Identities=7% Similarity=-0.032 Sum_probs=131.7
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+|++ ...+-.++..+.+.|++++|+..|+.+++.. |..... ...+......+...|++++|+..|+++++. .
T Consensus 11 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~ 82 (261)
T 3qky_A 11 RHSS-PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWA---ADAQFYLARAYYQNKEYLLAASEYERFIQI--Y 82 (261)
T ss_dssp CCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcch---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--C
Confidence 4444 6777788999999999999999999999884 332111 122223334566899999999999999954 5
Q ss_pred CccccchhhhHHHHHHHHhhhh--------cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 146 PLELFDGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
|+.. ....++...+..+.. .|++++|+..|++++... |++..............+..
T Consensus 83 p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------- 147 (261)
T 3qky_A 83 QIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------- 147 (261)
T ss_dssp TTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH----------
T ss_pred CCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH----------
Confidence 6432 223456666677777 999999999999998765 66554443221111100000
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 285 (850)
...+..++..|.+.|++++|+..|+.+++..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 148 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ---ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 1224567788888888888888888887653321 245677777777765 7888888888888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-08 Score=96.16 Aligned_cols=194 Identities=5% Similarity=-0.146 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..+...+..+...|++++|+..|+.+++..+.++ .. .+......+...|++++|+..|+++. ...|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~------~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~-- 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SV------TAYNCGVCADNIKKYKEAADYFDIAI--KKNYNL-- 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HH------HHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cH------HHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcch--
Confidence 57788899999999999999999999999853122 11 11123345668999999999999999 456764
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc-------ccHHHHHHHHHcCCChHHHHHHhhhC----CC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL-------DEEFRIVQLCVNKPDVNLAIRYACIV----PR 219 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~----p~ 219 (850)
..++...+..+...|++++|+..+++.++.. |++. ..+..++..+...|++++|+..|+.+ |.
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 5567777888889999999999999998765 6665 44677788888888888888887664 44
Q ss_pred --CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 220 --ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 220 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
...++..+...|...| ...++.+...+. .+...|..... ...+.+++|+..|++..+. .|+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCC
Confidence 4456677777776554 334455544432 23444444432 3456679999999998876 4543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=91.93 Aligned_cols=167 Identities=8% Similarity=-0.040 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH----------HHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------LEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~----------~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+...+..+...|++++|+..|+++++. +|........ ..........+...|++++|+..|++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455667788889999999999999999998 6654332111 0000012234456677777777777776
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC--hHHHHHHhhhCC
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD--VNLAIRYACIVP 218 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~p 218 (850)
+ +.|+. ..++...+..+...|++++|+..|++.++.. |++...+..++..+...|. ...+...+....
T Consensus 82 ~--~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 82 Q--KAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp H--HCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred H--HCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3 35544 4455555566666677777777777766654 5555555555555433322 222333333321
Q ss_pred CCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 219 RAD---ILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 219 ~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
... ..+..+..++...|++++|+..|++.++
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 1233334444444555555555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-07 Score=89.60 Aligned_cols=191 Identities=7% Similarity=-0.039 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+-.++..+...|++++|+..|+.+++.. |..... ...+......+...|++++|+..|+++++. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYS---QQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 4556678889999999999999999999874 332111 112223344566899999999999999954 666432
Q ss_pred chhhhHHHHHHHHhhh------------------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 151 DGSGFKLLKNECQRLL------------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
. ..++...+..+. +.|++++|+..|+++++.. |++...+........-.+..
T Consensus 77 ~---~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~----- 146 (225)
T 2yhc_A 77 I---DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL----- 146 (225)
T ss_dssp H---HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH-----
T ss_pred H---HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH-----
Confidence 1 122333333332 3678999999999988765 66655443322111000000
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (850)
......++..|.+.|++++|+..|+.+++..+... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01224578889999999999999999988533211 2568889999999999999999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=92.81 Aligned_cols=151 Identities=9% Similarity=-0.072 Sum_probs=82.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH----------------HHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN----------------ECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~----------------~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...|++++|+..|+++++ +.|+. .+++.. .+..+...|++++|+..|++.++..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~--~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIA--LNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 35588999999999999994 46654 333443 4555666777777777777766654
Q ss_pred CCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHH
Q 003082 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRD--LVSALRAYDASKKHLSSPNMYIC 259 (850)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~ 259 (850)
|++...+..++..+...|++++|+..|+.+ |.+..++..++..|...|+ .+.+...|..... ..|....+
T Consensus 85 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 555555555555555555555555555442 5555555555555544432 2333333433322 11222223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 260 RTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..+..++...|++++|+..|++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333344445555555555555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-08 Score=113.77 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=128.0
Q ss_pred hhcCChHHHHHHHHHHH--------HhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
...|++++|+..|++++ +. +|..... +......+...|++++|+..|+++++ +.|+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~------~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~----- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVEL------PLMEVRALLDLGDVAKATRKLDDLAE--RVGWR----- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHH------HHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCC-----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhH------HHHHHHHHHhcCCHHHHHHHHHHHhc--cCcch-----
Confidence 78899999999999998 44 4443322 22233355688999999999999995 46665
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHH
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVR 229 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~ 229 (850)
..++...+..+...|++++|+..|++.++.. |+....+..++.++...|++++ +..|+. -|.+..++..+..
T Consensus 467 -~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 467 -WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 5566777777888999999999999998876 8888888888888888888888 777665 3777788888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGD 271 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 271 (850)
+|.+.|++++|++.|++..+. .| +...+..+..++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 899999999999888887764 34 35567777777655444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=87.16 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhC----C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIV----P-RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~----p-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
..+...+..+...|++++|+..|..+ | .+..++..++..|...|++++|+..|+...+..+ .+..+|..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 44555555555555555555555432 3 3444444555555555555555555555555321 2344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003082 267 GICGDYMKSRAIYEDLRSQNVTLNIY-VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (850)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~ 345 (850)
...|++++|+..|++..+. .|+.. .+..+ ...|..+-..+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~--------------------------~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLY--------------------------AIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHH--------------------------HHHHHHHhHHHHHhccHHHHHH
Confidence 5555555555555555432 11111 00000 0356677777888899999999
Q ss_pred HHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 346 IYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
.|++..+ ..|+ ...|..+...|...| ..+++++...+. .+...|..... ...+.+++|...|+
T Consensus 139 ~~~~al~------~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 139 NYKHATD------VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHTT------SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHh------cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9988876 3454 456666666665443 344555554432 24445544432 34566899999999
Q ss_pred HHHHc
Q 003082 423 EMLQA 427 (850)
Q Consensus 423 ~m~~~ 427 (850)
+..+.
T Consensus 205 ~a~~l 209 (228)
T 4i17_A 205 EAVTL 209 (228)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 98876
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-07 Score=91.30 Aligned_cols=209 Identities=9% Similarity=-0.082 Sum_probs=148.3
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHH-HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh----
Q 003082 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG---- 154 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~---- 154 (850)
.+ ..+++++|+..|.++.+. +|.....++....++- ....+...++..+++..+.+.. ++.|........
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGL 90 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTT
T ss_pred cc-cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCc
Confidence 44 579999999999999999 6665544433210000 0112234566677888888777 666664322111
Q ss_pred -----------hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC---
Q 003082 155 -----------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--- 220 (850)
Q Consensus 155 -----------~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~--- 220 (850)
-++.+..+..|...|++++|.++|+.+...+ |... ..+.++..+.+.+++++|+.+|......
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 2344555677888999999999999876544 6555 7778888999999999999999765322
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 221 ---DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 221 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
..++..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++... .|+...+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 2467889999999999999999999988543224 3446677778889999999999999999886 45544444
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
.|.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-07 Score=93.96 Aligned_cols=215 Identities=10% Similarity=-0.008 Sum_probs=150.3
Q ss_pred ChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 206 ~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
++++|...|.. .+..|...|++++|+..|.+..+. |..++ ..+|+.+..+|.+.|++++|+..|+
T Consensus 32 ~~~~A~~~~~~----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 32 KFEEAADLCVQ----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36666665543 466788899999999999877653 22222 4689999999999999999999998
Q ss_pred HHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhhhcCC
Q 003082 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGV 358 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~-g~~~~A~~i~~~m~~~~~~g~ 358 (850)
+..+ ++.. .|-.. -..+++.+...|... |++++|...|++..+......
T Consensus 102 ~Al~--------------------------l~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 102 NAIQ--------------------------IFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHH--------------------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH--------------------------HHHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 7653 2211 11000 134677888889996 999999999998887532211
Q ss_pred ccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003082 359 LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (850)
Q Consensus 359 ~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (850)
... ...+|+.+...|...|++++|+..|++..+....... ..|..+..++...|++++|...|++..+. .|
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p 230 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DP 230 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 000 1356888899999999999999999999886543222 15777888899999999999999998753 33
Q ss_pred CH------HHHHHHHHHHH--HhCCHHHHHHHHHHHhh
Q 003082 432 NS------QCCNILLQACV--EACQFDRAFRLFRSWTL 461 (850)
Q Consensus 432 ~~------~~~~~ll~~~~--~~g~~~~A~~l~~~m~~ 461 (850)
+. ..+..++.+|. ..+++++|...|+.+..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 32 13444556664 45678888888866543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=77.94 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
.|..+...+...|++++|..+|+.+.+. .+.+...|..+...+...|++++|...++++...+. .+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHH
Confidence 4667788888889999999999888763 234567788888888889999999999998887643 3677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++.+...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88999999999999999888764 446677888888899999999999998887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-08 Score=88.73 Aligned_cols=138 Identities=6% Similarity=-0.032 Sum_probs=95.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|++.|+++. ...|+. ......++..|.+.|++++|++.|++.++.. |++...+..++..+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~--~~~p~~------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 7 RRSKADVERYIASVQGST--PSPRQK------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYE 76 (150)
T ss_dssp CCCHHHHHHHHHHHHHHS--CSHHHH------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhc--ccCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 346788888888888887 444543 2334455667778899999999888888765 777777777888888
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA-YDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
..|++++|+..|+.+ |.+..++..++..|.+.|++++|... ++...+..+ -+..+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 888888887776553 66667777777777777777665554 466665421 355666666666665553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=97.50 Aligned_cols=165 Identities=9% Similarity=-0.079 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|...... ......+...|++++|+..|+++.+ ..|+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~-- 184 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIG------LLLAETLIALNRSEDAEAVLXTIPL--QDQDT-- 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHH------HHHHHHHHHTTCHHHHHHHHTTSCG--GGCSH--
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHH------HHHHHHHHHCCCHHHHHHHHHhCch--hhcch--
Confidence 555666677777777777777777777776 44432221 1122344467777777777776663 34432
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
....+.....+...++.++|+..+++.+... |+ +..++..+...
T Consensus 185 ----~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~------------------------------~~~~~~~la~~ 228 (287)
T 3qou_A 185 ----RYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PE------------------------------DAALATQLALQ 228 (287)
T ss_dssp ----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhcccCccHHHHHHHHhcC--Cc------------------------------cHHHHHHHHHH
Confidence 1122223333444555566666666655543 44 44566666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
|...|++++|+..|.++++..+.. +...+..++.+|...|+.++|...|++..
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 777777777777777776653321 25567777777777777777777666544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.64 E-value=6.2e-06 Score=84.00 Aligned_cols=177 Identities=8% Similarity=-0.007 Sum_probs=102.9
Q ss_pred HHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 210 AIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 210 A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+..++.. +++..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555432 33445556778888888888888888888766553 23566777888888888888888888888876
Q ss_pred CCCCc-----CHHHHHHHHHh----hcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 285 QNVTL-----NIYVFNSLMNV----NAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 285 ~g~~p-----d~~t~~~ll~~----~~~--~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
. .| +..+...|..+ ..| +...|..+|+++... .|+..+...|+.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 44 23333333332 122 666677777776543 244333344444666677777777776655432
Q ss_pred hhc--C---CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003082 354 EAK--G---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (850)
Q Consensus 354 ~~~--g---~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 392 (850)
.-. . .-+-|..+...+|......|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 100 0 001234444344433444454 566666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-07 Score=92.18 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=102.5
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+...|++++|+..|+++++ ..|+.. ....++..++..+...|++++|+..|++.+... |++..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~--~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--------- 87 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFT--YGRTHE---WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPR--------- 87 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGG--GCSCST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTT---------
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCCCc---chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCch---------
Confidence 34577888888888888874 345431 123445555666677788888888888777653 32211
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHHH---------------
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGK--------KRDLVSALRAYDASKKHLSSPNMYI--------------- 258 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~--------------- 258 (850)
...++..++..|.. .|++++|+..|+++++..+. +...
T Consensus 88 ------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 88 ------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLA 148 (261)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHH
Confidence 11334455555555 66666666666666654221 1122
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-c-CHHHHHHHHHhhc------------CChHHHHHHHHHHHHcC
Q 003082 259 --CRTIIDVCGICGDYMKSRAIYEDLRSQNVT-L-NIYVFNSLMNVNA------------HDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 259 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-d~~t~~~ll~~~~------------~~~~~a~~l~~~m~~~g 319 (850)
+..+...|.+.|++++|+..|+.+.+.... + ....+..+-.++. +++++|...|+++.+..
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 256788899999999999999999876322 1 1233333333332 78899999999998763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-07 Score=95.04 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS---P--NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..+...|.. |++++|+..|++.++.... + ...+++.+..+|.+.|++++|+..|++..+
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777777 7777777777766543110 0 134677777777788888888877776553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=76.92 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
++..++..|...|++++|+.+|+++.+... .+...+..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 455666677777777777777777665432 345566666666777777777777666655321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
+.+...+..+...+...|++++|.+.|+.+.+. .+.+..++..+...+...|++++|
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHH
Confidence 123344555555566666666666666655542 122344555555555555555555
Q ss_pred HHHHHHHHH
Q 003082 383 LKVKEDMLS 391 (850)
Q Consensus 383 ~~l~~~m~~ 391 (850)
...++++..
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.9e-07 Score=94.46 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=111.3
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+...+...|...+..+...|++++|+..|++++........ .......+..+...|...|++++|+..|+++++.-..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS--LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34445788999999999999999999999999876421111 1111334445555677889999999999998854211
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
... ......++.+++..+.. |++++|+..|++.+... +.. ++...+ ..++.
T Consensus 109 ~g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~--------------~~~~~~----------~~~~~ 159 (307)
T 2ifu_A 109 NGT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENE--------------ERLRQA----------AELIG 159 (307)
T ss_dssp TTC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHT--------------TCHHHH----------HHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhC--------------CChhHH----------HHHHH
Confidence 111 11224556667777777 99999999988876532 110 000000 13444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.+...|.+.|++++|+..|++.++. +..++ ...+..+..++...|++++|...|++..
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555666666666666666555442 11111 1244445555555566666666666655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-05 Score=82.26 Aligned_cols=146 Identities=13% Similarity=0.023 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
++..|+++...+ .++..++..+..++...|++++|++++.+... .+.-.-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777776655 55667777888999999999999999988754 12001356778889999999999999999999
Q ss_pred HHHHCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 388 DMLSAGVTP-----NTITWSSLINACAN--AG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 388 ~m~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.|.+. .| +..+...|..++.. .| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99875 55 35666667666333 34 899999999999765 45544445555589999999999999987
Q ss_pred Hhh
Q 003082 459 WTL 461 (850)
Q Consensus 459 m~~ 461 (850)
+.+
T Consensus 237 l~~ 239 (310)
T 3mv2_B 237 LLS 239 (310)
T ss_dssp HHS
T ss_pred HHH
Confidence 654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=109.07 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=136.9
Q ss_pred hhcCchhHHHHHHHHHHHc------CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 124 IREGRIDCVVGVLKKLNEL------GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~------~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
...|++++|++.|+++.+. ...|+. .+++...+..+...|++++|+..+++.++.. |++...++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES------VELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHH
Confidence 5789999999999999821 234543 5667777788889999999999999998865 8888899999
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 273 (850)
+.++...|++++|+..|+.+ |.+..++..+...|.+.|++++ ++.|++.++..+ .+...|..+..+|.+.|+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHH
Confidence 99999999999999988764 8888999999999999999999 999999988543 46788999999999999999
Q ss_pred HHHHHHHHHHhCCCCcC-HHHHHHHHHh
Q 003082 274 KSRAIYEDLRSQNVTLN-IYVFNSLMNV 300 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd-~~t~~~ll~~ 300 (850)
+|++.|++..+. .|+ ...+..+-.+
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHH
Confidence 999999988765 455 3344444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-07 Score=103.40 Aligned_cols=150 Identities=11% Similarity=-0.035 Sum_probs=111.9
Q ss_pred cCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC
Q 003082 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP 205 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (850)
.|++++|+..|+++. ...|+. ..++...+..+...|++++|++.+++.++.. |+....+..++..+...|
T Consensus 2 ~g~~~~A~~~~~~al--~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAV--RHRPQD------FVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp ---------------------CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHH--HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 478999999999998 556764 4566677777888999999999999998765 778888899999999999
Q ss_pred ChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 003082 206 DVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC---GDYMKSRAI 278 (850)
Q Consensus 206 ~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~ 278 (850)
++++|+.+++.+ |.+..++..++..|.+.|++++|++.|++..+... .+...+..+..++... |++++|.+.
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999988764 77778899999999999999999999999888642 4677888999999999 999999999
Q ss_pred HHHHHhCC
Q 003082 279 YEDLRSQN 286 (850)
Q Consensus 279 ~~~m~~~g 286 (850)
|++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=86.65 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=105.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
|+..+...|+++.|+..++..... +|....... .+ ...|...|++++|++.|+++++ +.|+. ..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~---~l---a~~y~~~~~~~~A~~~~~~al~--~~p~~------~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGF---YF---AKLYYEAKEYDLAKKYICTYIN--VQERD------PK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHH---HH---HHHHHHTTCHHHHHHHHHHHHH--HCTTC------HH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHH---HH---HHHHHHcCCHHHHHHHHHHHHH--hCCCC------HH
Confidence 555667778999999999988776 454433221 22 2345688999999999999994 47765 55
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH-hhh----CCCCcchHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACI----VPRADILFCNFVREF 231 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~----~p~~~~~~~~li~~~ 231 (850)
++..++..+...|++++|+..|++.++.. |+....+..++..+.+.|++++|.+. ++. .|.+..+|......+
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 66777777888999999999999988865 88888899999999999988766543 343 488878888777777
Q ss_pred HhcCC
Q 003082 232 GKKRD 236 (850)
Q Consensus 232 ~~~g~ 236 (850)
.+.|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 77775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-05 Score=80.90 Aligned_cols=166 Identities=8% Similarity=-0.064 Sum_probs=112.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC--ChHHHHHHhhh----CCCCcchHHHHHHHH----Hhc---C
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACI----VPRADILFCNFVREF----GKK---R 235 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~----~p~~~~~~~~li~~~----~~~---g 235 (850)
...++|+++.+.++... |+....|+.-...+...+ .+++++.+++. -|++..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34478999999998876 888889998888888888 88988888765 378888887655444 555 7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCC------h
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHD------L 305 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~------~ 305 (850)
++++++.+++.+++.. +.|..+|+.-.-++.+.|+++ ++++.++.+.+... -|...|+..-.+. .+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 8889999999888753 357778888887788888877 88888888876532 2344444332221 122 4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~ 339 (850)
+++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 45555555555443 3355555555555555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=88.37 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL- 200 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~- 200 (850)
.+...|++++|+..|+++.+ ..|+. ..++...+..+...|++++|+..+++..... | +.......+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~--~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSD--ELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCH--HHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHH
Confidence 34578888888888888874 35554 4556666777778888888888888765543 3 32222222211
Q ss_pred HHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003082 201 CVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 275 (850)
+...+....|+..++. .|.+..++..+...+...|++++|+..|+++++..+.+ +...+..+..++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1121222234444433 46677777778888888888888888888877754432 355677777778888888888
Q ss_pred HHHHHHHH
Q 003082 276 RAIYEDLR 283 (850)
Q Consensus 276 ~~~~~~m~ 283 (850)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.3e-06 Score=85.28 Aligned_cols=180 Identities=11% Similarity=-0.007 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..++..++.......... ...........+...|++++|+..|+++.+.. +....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~ 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ--LTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC--CCSSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--hcCCc
Confidence 444556677778888888888888888776422111111 11122223344567788888888888887432 22111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc----chHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~----~~~~~ 226 (850)
......++...+..|...|++++|+..+++.++.. +..+.+. .++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHh
Confidence 11224456666777777888888888887765321 0011111 46778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 283 (850)
++..|.+.|++++|+..|++.++.. ... -..+|..+..+|.+.|++++| ...|+...
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8889999999999999998776531 111 256788999999999999999 77777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.3e-06 Score=86.22 Aligned_cols=162 Identities=7% Similarity=-0.037 Sum_probs=116.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.++..+..+...|++++|+..|++.+... |++...+..++..+...|++++|+..++.+ |............
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 4556666777778899999999999888765 777778888888888888888888888776 3222223334445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
+.+.++.++|+..|++.....+ .+...+..+..+|...|++++|+..|+++.+.. |+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~-------------------- 251 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXD--LT-------------------- 251 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cc--------------------
Confidence 6677778888888888777532 467778888888888888888888888877542 11
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~ 351 (850)
..+...+..|...+...|+.++|...|++..
T Consensus 252 ----------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 ----------AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ----------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 0124566677777777777777777766543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-05 Score=82.67 Aligned_cols=214 Identities=8% Similarity=-0.093 Sum_probs=163.6
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH---
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC--- 201 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 201 (850)
...++|++.+++++ .+.|+. +.++......+...| ++++++++++.++... |+....|+.-...+
T Consensus 47 e~s~~aL~~t~~~L--~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 47 EYSERALHITELGI--NELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp CCSHHHHHHHHHHH--HHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHH
Confidence 44468999999999 558876 555665566666777 9999999999999876 88889998766666
Q ss_pred -HcC---CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 202 -VNK---PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLV--SALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 202 -~~~---~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
... +++++++.+++.+ |++..+|+.-.-.+.+.|+++ ++++.++.+++..+ -|..+|+....++.+.++
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 555 7889998877654 888899999888888899998 99999999998653 577888888777777776
Q ss_pred ------HHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcC-ChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCh
Q 003082 272 ------YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH-DLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNT 340 (850)
Q Consensus 272 ------~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~-~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~ 340 (850)
++++++.++.+.... +-|...|+.+-.. ..+ ..+...++..++...+ -+.+...+..+.+.|++.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 999999999988763 2355555544433 233 3444556666654432 234678888899999999999
Q ss_pred HHHHHHHHHHHH
Q 003082 341 VLAQEIYGEVKH 352 (850)
Q Consensus 341 ~~A~~i~~~m~~ 352 (850)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=82.15 Aligned_cols=157 Identities=8% Similarity=-0.034 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-h
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-N 301 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~ 301 (850)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+...+.. |+...+..+... .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 44555666666677777777776655432 1345566666666777777777777776655432 222211111000 0
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhc
Q 003082 302 --AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADA 376 (850)
Q Consensus 302 --~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~ 376 (850)
.+....++..|++..+.. +-+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...|...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHHh
Confidence 011112344444444432 22355555555666666666666666665554 2222 33455555555555
Q ss_pred CCHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDM 389 (850)
Q Consensus 377 g~~~~A~~l~~~m 389 (850)
|+.++|...|++.
T Consensus 158 g~~~~A~~~y~~a 170 (176)
T 2r5s_A 158 GQGNAIASKYRRQ 170 (176)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 5555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=99.46 Aligned_cols=151 Identities=7% Similarity=-0.077 Sum_probs=109.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (850)
.|++++|+..|+++++. +|..... +......+...|++++|++.|+++. .+.|+. ..++..++.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~------~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVA------WLMLADAELGMGDTTAGEMAVQRGL--ALHPGH------PEAVARLGR 65 (568)
T ss_dssp ---------------------CCHHH------HHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTC------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC------HHHHHHHHH
Confidence 47899999999999887 4443222 2223345568899999999999999 557765 556677777
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhc---CC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK---RD 236 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~---g~ 236 (850)
.+...|++++|++.+++.++.. |+....+..++..+...|++++|+.+++.. |.+..++..++..|... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 8889999999999999998875 778888999999999999999999988763 77778899999999999 99
Q ss_pred hHHHHHHHHHHHhCCC
Q 003082 237 LVSALRAYDASKKHLS 252 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~ 252 (850)
+++|.+.|++..+.+.
T Consensus 144 ~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999988654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-06 Score=77.60 Aligned_cols=94 Identities=9% Similarity=0.049 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+...+..+.+.|++++|+..|++.+... |+++..|..++.++...|++++|+..|+.+ |.+..++..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 6667777778888999999999999988765 777666666666666666666666666543 5566666666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
|.+.|++++|+..|+..++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.9e-06 Score=84.96 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=120.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..+...+..+...|++++|+..++.++.......... .....+..+...+...|++++|+..|+++++....... .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~--~ 151 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--V 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--T
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc--H
Confidence 3444557788899999999999999987532211111 11112222334566788999999999999964322222 1
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.....++..++..+...|++++|+..+++.++.-... .. .. ....++++++..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------------------~~~~~~~nlg~~ 205 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---EE-----------------------FDVKVRYNHAKA 205 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC---HH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---hh-----------------------HHHHHHHHHHHH
Confidence 1223456777778888999999999998876421000 00 00 001467788888
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICG-DYMKSRAIYEDLRS 284 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 284 (850)
|.+.|++++|+..+++.++. +..+. ..+|..+..+|.+.| .+++|.+.|++...
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999998888877643 22222 567888889999999 46888888887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=89.93 Aligned_cols=190 Identities=7% Similarity=-0.053 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|..... +......+...|++++|+..|++++ .+.|+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~-- 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVY------YTNRALCYLKMQQPEQALADCRRAL--ELDGQS-- 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHH------HHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCC--
Confidence 677888999999999999999999999998 4443222 2233345668999999999999999 567765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH---HHcCCChHHHHHHhhhCCCCcchHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACIVPRADILFCNF 227 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~p~~~~~~~~l 227 (850)
..++...+..+...|++++|+..|++.++.. |+....+...+.. ..+...+..... ...+.+..+...+
T Consensus 72 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l 143 (281)
T 2c2l_A 72 ----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEE--RRIHQESELHSYL 143 (281)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHH--TCCCCCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHH
Confidence 4566677778889999999999999887654 4332111111111 111111211111 2344444444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 284 (850)
...+ .|++++|++.|+...+. .| +......+...+.+. +.+++|.++|....+
T Consensus 144 ~~l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3332 68888888888877764 34 344444554555555 667888888887765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-05 Score=78.16 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
.+...|.+.|++++|...|+++.+...... ...+..+..++.+.|+.++|...++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 345567777778888877777776532211 2456677777778888888888887776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-05 Score=79.41 Aligned_cols=172 Identities=7% Similarity=-0.065 Sum_probs=114.3
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
..+..+...|++++|...++++.+. .+...........+...+..+...|++++|+..+++.+.......+.. . .
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~-~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--Q-N 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--H-H
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--H-H
Confidence 3345667899999999999999853 333211111122333455666778899999999999887542222210 0 0
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCC
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK----H-LSSP-NMYICRTIIDVCGICGD 271 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~ 271 (850)
..+++.++..|...|++++|+..|+.+++ . +..+ ...+|..+..+|.+.|+
T Consensus 155 -----------------------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 155 -----------------------LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 13578888999999999999999988873 1 1222 23478999999999999
Q ss_pred HHHHHHHHHHHHhC----CCCcC-HHHHHHHHHh--hcC-ChHHHHHHHHHHHH
Q 003082 272 YMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNV--NAH-DLKFTLEVYKNMQK 317 (850)
Q Consensus 272 ~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~--~~~-~~~~a~~l~~~m~~ 317 (850)
+++|+..+++..+. +..+. ..+|..+-.+ ..| +.++|.+.|++...
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999887642 32233 3444444433 346 46889888887754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00045 Score=76.75 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWT--ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 605 (850)
+.+.|..+|... +. ...+..+|. +.+...+ .++.+.|..+|+...+.- .-+...|...++-..+.|+.+.|..+
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677777766 21 112333333 3333222 225777888888776642 12344556666666777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 606 ~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
|++.. -....|...+.--...|+.+.+++ +++++.
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~---v~~~~~ 411 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRE---LVDQKM 411 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH---HHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 88762 246677777776667787666443 444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=78.40 Aligned_cols=141 Identities=12% Similarity=-0.004 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC----
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP---- 205 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 205 (850)
.+|+..|+++.+.| . ..++..+...+...+++++|+..|++..+.+ .+..++.++..|.. +
T Consensus 3 ~eA~~~~~~aa~~g-~---------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-D---------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT-C---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC-C---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCC
Confidence 35777788877643 1 2344455556667899999999999987754 45667777877777 5
Q ss_pred ChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHH
Q 003082 206 DVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGI----CGDYMK 274 (850)
Q Consensus 206 ~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~ 274 (850)
++++|+.+|+.. +.+..+++.|...|.. .+++++|+..|+...+.|.. .+..++..|...|.. .+++++
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 788888887765 4555677777777776 77888888888887775431 125677777777777 667788
Q ss_pred HHHHHHHHHhC
Q 003082 275 SRAIYEDLRSQ 285 (850)
Q Consensus 275 A~~~~~~m~~~ 285 (850)
|+..|+...+.
T Consensus 148 A~~~~~~A~~~ 158 (212)
T 3rjv_A 148 ASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88877777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-06 Score=75.50 Aligned_cols=115 Identities=6% Similarity=-0.113 Sum_probs=88.1
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|+. ...+...+..+.+.|+|++|+..|+++++. +|..... +......+...|++++|+..|+++++ +
T Consensus 8 inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~~~~~~~~~~~~~~A~~~~~~al~--~ 76 (126)
T 4gco_A 8 INPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL------YSNRAACLTKLMEFQRALDDCDTCIR--L 76 (126)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHhhHHHhhccHHHHHHHHHHHHH--h
Confidence 46666 788889999999999999999999999988 5554332 22333456688999999999999995 4
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
.|+. ..++...+..+...|++++|++.|++.++.. |++......+.
T Consensus 77 ~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 77 DSKF------IKGYIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhhh------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 6654 5667777888888999999999999988765 76655444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-05 Score=77.62 Aligned_cols=178 Identities=8% Similarity=-0.025 Sum_probs=121.6
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
.+..+...|++++|++.+++..+. .+...........+...+..+...|++++|+..+++.+.......+.. .
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~--- 153 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--Q--- 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT--H---
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcc--ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH--H---
Confidence 445667899999999999998864 332211112223344455666788899999999988876542221110 0
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-CC--CHHHHHHHHHHHHhcCCH
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS-SP--NMYICRTIIDVCGICGDY 272 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~-~p--~~~~~~~li~~~~~~g~~ 272 (850)
...+++.++..|...|++++|+..|++..+. .. .+ ...+++.+..+|.+.|++
T Consensus 154 ---------------------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 154 ---------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 0146788999999999999999999988732 11 11 225889999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLA-QEIYGEV 350 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~g~~~~A-~~i~~~m 350 (850)
++|+..|++..+ +.. ..+... -..+|..+...|.+.|+.++| ...|++.
T Consensus 213 ~~Al~~~~kal~--------------------------~~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 213 EESLYQVNKAIE--------------------------ISC---RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHH--------------------------HHH---HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------HHH---hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999998653 221 112112 256788888899999999999 7777766
Q ss_pred HHh
Q 003082 351 KHL 353 (850)
Q Consensus 351 ~~~ 353 (850)
...
T Consensus 264 l~~ 266 (293)
T 2qfc_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-06 Score=73.76 Aligned_cols=93 Identities=10% Similarity=-0.041 Sum_probs=53.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+.+.+..+.+.|++++|++.|++.++.. |.....+..++.++...|++++|+..++.+ |.+..+|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4556666667777888888888888877654 555555555555555555555555544332 4444444555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|++++|+..|+..++
T Consensus 91 ~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.6e-06 Score=77.02 Aligned_cols=109 Identities=8% Similarity=-0.016 Sum_probs=76.9
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
-+++..+|+. ...+..++..+.+.|++++|+..|++++.. +|.....+. .....+...|++++|+..|+++
T Consensus 26 ~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~------~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 26 KDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIM------GLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp GGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH------HHHHHHHHHccHHHHHHHHHHH
Confidence 3456677776 777778888888888888888888888887 555433322 2223445778888888888888
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
. .+.|+. ...+.+.+..+...|++++|+..|++.++..
T Consensus 97 l--~l~P~~------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 F--ALGKND------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp H--HHSSSC------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H--hhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8 446665 4456666677777888888888888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=88.36 Aligned_cols=188 Identities=8% Similarity=-0.038 Sum_probs=137.4
Q ss_pred hhhccccCCcchhhHHHHH-------HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH---------------HHHH
Q 003082 59 LLSTVRRDLSSRNDYYADM-------ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS---------------LEMV 116 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l-------~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~---------------~~~~ 116 (850)
.-+++..+|+- .+.|..+ ...+...++..+++..+++.+.. .|..+...+. -.+.
T Consensus 29 F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~~v~~r~dl~ 105 (282)
T 4f3v_A 29 FTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITYPVTSPLAIT 105 (282)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEEECSSHHHHH
T ss_pred HHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccccccCCHhHHH
Confidence 33467888988 9999999 78899999999999988888775 5554433332 1111
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---ccc
Q 003082 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDE 193 (850)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 193 (850)
......+...|++++|.++|+.+.. ..|+. . .....+..+.+.++|++|+..|+..... +++ ...
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a 173 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEH------L-VAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHH------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCch------H-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHH
Confidence 2223456689999999999998873 45654 2 3333455677899999999999855432 222 236
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC------CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV------PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~------p~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
++.++.++...|++++|+.+|+.. |. .......+..++.+.|+.++|..+|+++.... |+...+..|.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 788999999999999999999876 22 22467788999999999999999999999864 4455555553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=79.15 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
.|++++ .+.|+. ...+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..|
T Consensus 9 ~~~~al--~~~p~~------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 9 TIAMLN--EISSDT------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp SHHHHT--TCCHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHH--cCCHhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345555 445544 5566666777778899999998888887654 555544555555554444444444444
Q ss_pred hhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 215 CIV----PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 215 ~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+.+ |.+..++..++.+|...|++++|+..|+..++
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 44444444444444444444444444444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-05 Score=72.76 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHh-
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD- 375 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~- 375 (850)
+.++|++.|++..+.| +...+..|-..|.. .+++++|.+.|++..+ ..++ ...+..|-..|..
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcC
Confidence 4445555555554433 45555556555655 5677777777776654 2222 5566666666666
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 003082 376 ---AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (850)
Q Consensus 376 ---~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 428 (850)
.+++++|+..|++..+.+ .+...+..|...|.+. | +.++|..+|+...+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 667777777777776651 2344556666666543 2 6777777777777666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-06 Score=93.19 Aligned_cols=147 Identities=8% Similarity=-0.041 Sum_probs=107.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
..+..+|+|++|+.++++.++......+..++.....+.++...|..+|++++|..+++++++....--...++.+...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44668899999999999999887554555566667888888888999999999999999987652111112356667888
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
.+++..|..+|++++|+.++++.++.....-+.. .+. ...+...|...+...+.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-------------Hp~-----------~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-------------HPI-----------TKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------------SHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------------ChH-----------HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988764321110100 111 1134456777888888899
Q ss_pred HHHHHHHHHHh
Q 003082 239 SALRAYDASKK 249 (850)
Q Consensus 239 ~A~~~~~~m~~ 249 (850)
+|..+|..+.+
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=74.04 Aligned_cols=126 Identities=11% Similarity=-0.070 Sum_probs=90.1
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.++.. .|.+..++..++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3445556666778899999999999988765 66677777788888888888888877655 36666777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYIC--RTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
|...|++++|+..|++..+..+ .+...+ ..++..+...|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888776532 233444 333334666777888877777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.6e-06 Score=74.53 Aligned_cols=92 Identities=8% Similarity=-0.089 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..|+.+ |.+..++..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4556666677778899999999888887654 555544444444444444444444444331 3333444444444
Q ss_pred HHhcCChHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASK 248 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~ 248 (850)
|...|++++|+..|+..+
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00012 Score=63.58 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|..+|+++.+... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 567788888899999999999999988763 234567888888899999999999999999887643 36788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
+...+...|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999999988764 3345555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-06 Score=79.15 Aligned_cols=120 Identities=7% Similarity=0.006 Sum_probs=67.1
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++.+. .|+. ..++...+..+...|++++|+..+++.+... |++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~-------------- 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GEN-------------- 77 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSC--------------
T ss_pred hccCHHHHHHHHHHHHHh--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--------------
Confidence 456667777777666633 4433 3344445555556677777777666665543 333
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHH-HHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVRE-FGKKRDL--VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~-~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
..++..++.. |...|++ ++|+..|+...+..+ .+...+..+..+|...|++++|...|+.
T Consensus 78 ----------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 78 ----------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp ----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3445555555 5566666 666666666665421 2455566666666666666666666666
Q ss_pred HHhC
Q 003082 282 LRSQ 285 (850)
Q Consensus 282 m~~~ 285 (850)
..+.
T Consensus 141 al~~ 144 (177)
T 2e2e_A 141 VMDL 144 (177)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=75.54 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDY--MKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
+..++..++..|...|++++|+..|+...+..+ .+...+..+..+ |...|++ ++|...|+...+... -+...+..
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 120 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALML 120 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHH
Confidence 346677888889999999999999999887542 467788888888 8899998 999999999987632 23444444
Q ss_pred HHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (850)
Q Consensus 297 ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 336 (850)
+-. ...|+++.|...|++..+.. |+......++....+
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLN--SPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhC--CCCccHHHHHHHHHH
Confidence 433 35689999999999998864 333333344444444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-05 Score=72.31 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+..++..+...|++++|+..|++.. .|+..+|..+..+|...|++++|+..|+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------- 67 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---------------- 67 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 34566777778888888888887663 3577778888888888888888888877765321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC----------ccc-CHhHHHHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVK 371 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~----------~~~-d~~ty~~li~ 371 (850)
+.+...|..+...|...|++++|.+.|+...+...... ..| +...|..+..
T Consensus 68 ------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 68 ------------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 23456677777777788888888888877766321100 011 1256667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 003082 372 VFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.|...|++++|...|++..+..
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHHcC
Confidence 7777788888888777777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=71.98 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=83.1
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-+++..+|+. ...+..++..+...|++++|+..|+.++.. +|....... .....+...|++++|+..|++
T Consensus 10 ~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~------~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 10 IAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFL------GLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHH------HHHHHHHHHhhHHHHHHHHHH
Confidence 34466777776 778888999999999999999999999988 554433321 222345588999999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+.+ +.|+. ...+...+..+...|++++|+..|++.++..
T Consensus 81 al~--l~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 81 GAV--MDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH--HSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 984 46664 4556667777888999999999999887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00013 Score=67.32 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|...|+...+. .+.+..+|..+...+...|++++|...+++..+... .+...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 456777888889999999999999998874 234677888899999999999999999999987643 36788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+...+...|++++|...|++..+.. +.+...+. .....+.+.|++++|.+.+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998864 33444553 344447788999999999987643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=72.89 Aligned_cols=150 Identities=7% Similarity=-0.102 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
....+..++..+...|++++|+..++++++.... ..........+......+...|++++|+..|+++.+.. +...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE--FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhC
Confidence 3678889999999999999999999999876322 11111222344455566779999999999999988542 1111
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
.......++...+..+...|++++|+..+++.+.......+ .. ....++..+..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~~----------~~~~~~~~la~ 137 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------------RI----------GEGRACWSLGN 137 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc----------------hH----------hHHHHHHHHHH
Confidence 11222445666677778889999999988877643210000 00 00145667888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003082 230 EFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~ 249 (850)
.|...|++++|...|++..+
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888999999888887664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-05 Score=69.01 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
.....+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.+++.+ |.+..++..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 335566667777778899999999999887654 555555666666666666666666655442 44455566666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
..|.+.|++++|+..|++..+... .+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 666666666666666666555321 1334444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00011 Score=71.53 Aligned_cols=129 Identities=10% Similarity=-0.118 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
.+..+...+...|++++|...|++. +.++...|..+...|...|++++|...|++..+... .+...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence 4556777888999999999999865 356888999999999999999999999999987653 3678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
..|...|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+......
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885311 1 12678888999999999999999999887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00017 Score=74.86 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
..++..+...+.+.+..++|+.+++.++.. +|..++... ....++. ..| .+++++++++.++ ...|..
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn---~R~~iL~---~l~~~l~eEL~~~~~~L--~~nPKn- 122 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQ---YRFSLLT---SLNKSLEDELRLMNEFA--VQNLKS- 122 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHH---HHHHHHH---HTTCCHHHHHHHHHHHH--HTTCCC-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHH---HHHHHHH---HhhhhHHHHHHHHHHHH--HhCCCc-
Confidence 344555555566667778999999999998 777666533 2222332 345 5899999999999 457765
Q ss_pred cchhhhHHHHHHHHhhhhc-C-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDS-G-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.++......+... + ++++++++++++++.. |.+..+|+.-.-.+.
T Consensus 123 -----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 123 -----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYS 170 (349)
T ss_dssp -----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 55555554445444 5 7788999999888654 777666665544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.02 Score=63.35 Aligned_cols=333 Identities=8% Similarity=0.006 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCC-cCHHHHHHHHHhhc------CCh
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-pd~~t~~~ll~~~~------~~~ 305 (850)
|+++.+..+|++.+.. .|+...|..-+....+.+. .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888899999888874 4688888888877666663 45567777776653 543 35677777776533 356
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~-------------~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
+.+.++|++.+......-...|......-.. .+.+..|..+++.+...... .+...|...+.-
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHH
Confidence 6788888888763211111122222111000 11222334444433331100 122334333332
Q ss_pred HHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 373 FADAK--W-----WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 373 ~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
-...+ - .+.+..+|++++... +-+...|-..+..+.+.|+.+.|..+|+..... |....... .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHh
Confidence 21110 0 234555666666543 224556666666666667777777777766665 33221111 1222
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
..+.++. ++.+ ...+
T Consensus 255 ~~e~~~~---~~~l--------------------------------------------------------------~~~~ 269 (493)
T 2uy1_A 255 VMDEEAV---YGDL--------------------------------------------------------------KRKY 269 (493)
T ss_dssp HTTCTHH---HHHH--------------------------------------------------------------HHHT
T ss_pred hcchhHH---HHHH--------------------------------------------------------------HHHH
Confidence 2111111 1111 1111
Q ss_pred hc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 003082 526 CT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT--TAIKVCVRSKRLKQA 602 (850)
Q Consensus 526 ~~-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~--~li~~~~~~g~~~~A 602 (850)
.. ..+.+. + .. ......+|...+..+.+.+.++.|..+|++. ... ..+...|- +.+...+ .++.+.|
T Consensus 270 ~~~~~~~~~-----~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~a 339 (493)
T 2uy1_A 270 SMGEAESAE-----K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATP 339 (493)
T ss_dssp C----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHH
T ss_pred Hhhccchhh-----h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHH
Confidence 00 000000 0 00 0011245666677776778899999999999 321 12344443 2233222 3469999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIE 664 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~ 664 (850)
.++|+...+.- .-+...+...++-..+.|+.+. +..+|+... -....|...++
T Consensus 340 r~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~---aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 340 YNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEEN---ARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---HHHHHHHSC-----CBHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH-----HHHHHHHHHHH
Confidence 99999988742 1234556667777778888776 444666652 13455555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=68.18 Aligned_cols=114 Identities=11% Similarity=-0.067 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.++.. .|.+..++..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 4455556666778899999999999887654 55555666666666666666666666544 24555566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
|.+.|++++|...|+...+..+ .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655422 244555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00052 Score=71.28 Aligned_cols=114 Identities=9% Similarity=-0.043 Sum_probs=73.0
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC-ChHHHHHHhhh----CCCCcchHHHHHHHHHhc-C-ChHHHH
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACI----VPRADILFCNFVREFGKK-R-DLVSAL 241 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~----~p~~~~~~~~li~~~~~~-g-~~~~A~ 241 (850)
+..++|+++++.++... |+....|+.-...+...+ .+++++.+++. -|++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 45578889999988776 878777877777776666 47777766544 366666776665555555 5 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYM--------KSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~ 285 (850)
++++.+++... .|..+|+.-.-++.+.|.++ ++++.++.+.+.
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 77777776432 35666665555554444444 555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00014 Score=63.81 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|+..... .+.+...|..+...+...|++++|...+++..+... .+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 4567778888899999999999999988773 234677888888899999999999999999887643 3578888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 003082 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (850)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 449 (850)
.+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998864 34667777788888777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.4e-05 Score=71.14 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
.++..+...|...|++++|+..|++..+. +..+ ...++..+...|...|++++|...|++..+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------ 94 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE------------ 94 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------
Confidence 55667777888888888888888776652 2222 345688888888899999999888887542
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc-ccCHhHHHHHHHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVF 373 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~p--d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~-~~d~~ty~~li~~~ 373 (850)
+++ ..+-.+ ....+..+...+...|++++|...+++.......... ..-..++..+...+
T Consensus 95 --------------~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 95 --------------LLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp --------------HHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------HHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 221 112111 2345777788888889999999988887654322211 11122345566666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 003082 374 ADAKWWQMALKVKEDML 390 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~ 390 (850)
...|++++|...+++..
T Consensus 158 ~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHH
Confidence 67777777776666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.2e-05 Score=72.43 Aligned_cols=165 Identities=15% Similarity=-0.014 Sum_probs=109.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l 311 (850)
...|++++|.+.++.+.. .......++..+...|...|++++|...|++..+ +
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~ 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQ--------------------------Q 55 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------H
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------------------------H
Confidence 457889999986655544 2223567888999999999999999999987653 1
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 312 YKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 312 ~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
+. +.|.. ....+++.+...+...|++++|.+.|++..+......-.+ ....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11 11111 1345677888899999999999999998877543221011 234577777788888888888888887
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 389 MLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 389 m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
.... +... -..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7532 1110 122356666777777888887777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-05 Score=70.40 Aligned_cols=108 Identities=6% Similarity=-0.057 Sum_probs=80.9
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+++..+|+. ...+..++..+...|++++|+..|+.++.. +|....... .....+...|++++|+..|+++.
T Consensus 9 ~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~------~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 9 MLRGLSEDT-LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFL------GLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp CCTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHH------HHHHHHHHHhhHHHHHHHHHHHH
Confidence 355667776 777778899999999999999999999988 554433322 22234558899999999999998
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+. .|+. ...+...+..+...|++++|+..|++.+...
T Consensus 80 ~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 80 LM--DINE------PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HH--CTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hc--CCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 54 6664 4455666777788899999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=81.84 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=92.5
Q ss_pred cCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---------------
Q 003082 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE--------------- 190 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------- 190 (850)
.+++++|++.|+...+. .|+ ....+...+..+...|++++|+..|++.+... |+.
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLE------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHH
Confidence 34555666655554421 222 24556666777788899999999999988765 544
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
...+..++.++...|++++|+.+++.+ |.+..++..+..+|...|++++|+..|++.++..+ .+..++..+..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 355666666666677777766665543 55556666666667777777777777666665421 2455666666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 003082 267 GICGDYMKS-RAIYEDLR 283 (850)
Q Consensus 267 ~~~g~~~~A-~~~~~~m~ 283 (850)
.+.|++++| ..+|..|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33454443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00014 Score=74.41 Aligned_cols=195 Identities=9% Similarity=-0.117 Sum_probs=122.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
+...+..++..+.+.|++++|+..|+..++..+ .+...|..+..+|.+.|++++|+..|+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD------------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 345677788888889999999999988887532 367788888888889999999988888776431
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 300 ~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
+.+...+..+..+|...|++++|...|....+.........+...+..+ ...+..
T Consensus 69 ---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~-- 123 (281)
T 2c2l_A 69 ---------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKK-- 123 (281)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHH--
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHH--
Confidence 2356677788888888899999988888877643211001111111111 111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHh-CCHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEA-CQFDRAFRLFR 457 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~-g~~~~A~~l~~ 457 (850)
-+..........+......+.. + ..|+.++|++.++...+. .|+.... ..+-..+.+. +.+++|.++|.
T Consensus 124 -----~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 124 -----RWNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp -----HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333444444443322 2 368888888888877654 4554433 3333344444 67888999998
Q ss_pred HHhhc
Q 003082 458 SWTLS 462 (850)
Q Consensus 458 ~m~~~ 462 (850)
...+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 77653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00025 Score=77.60 Aligned_cols=180 Identities=13% Similarity=-0.020 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHh---------hhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA---------SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
..-+..+.+.|+|++|+..|..+++......... .......+..+...|...|++++|.+.|.++....
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-- 85 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-- 85 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Confidence 3456778899999999999999998743211100 00112234455666778999999999998887531
Q ss_pred Cccccchhhh-HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH
Q 003082 146 PLELFDGSGF-KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (850)
Q Consensus 146 p~~~~~~~~~-~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~ 224 (850)
+.. ...... .+...+...+...|++++|+.+++............ +....++
T Consensus 86 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 138 (434)
T 4b4t_Q 86 MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------------------------FLKHSLS 138 (434)
T ss_dssp HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------------------------SSHHHHH
T ss_pred HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------------------------HHHHHHH
Confidence 111 011111 111112233445677888887777654321000000 0011466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
..|+..|...|++++|..+++++... +..+ ...++..++..|...|++++|..+++...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 78899999999999999999877643 1122 34578899999999999999999998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=86.32 Aligned_cols=140 Identities=10% Similarity=-0.057 Sum_probs=102.8
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (850)
..+..+|++++|+.+|+++++.....-...++.+..++.+++..|..+|++++|+.++++.++.....-+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG---------- 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH---------- 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----------
Confidence 3455899999999999999876433333446677888888889999999999999999987653211101
Q ss_pred HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCCHH
Q 003082 201 CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LSS-PN-MYICRTIIDVCGICGDYM 273 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~ 273 (850)
...++ ...++++|+..|..+|++++|+.+|++.++. |.. |+ ..+.+.+-.++...+.++
T Consensus 387 ---~~Hp~-----------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 387 ---HNNAQ-----------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp ---TTCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1266788999999999999999998877642 433 33 335677778888899999
Q ss_pred HHHHHHHHHHh
Q 003082 274 KSRAIYEDLRS 284 (850)
Q Consensus 274 ~A~~~~~~m~~ 284 (850)
+|..+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6e-05 Score=65.58 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|++.++++.... |+.. .++..++..|.+.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~la~~~~~~~~ 58 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNA------------------------------EAWYNLGNAYYKQGD 58 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcH------------------------------HHHHHHHHHHHHhCC
Confidence 34445555667788888888888776543 3333 344555555666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 59 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 59 YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666655532 134555566666666666666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=78.27 Aligned_cols=111 Identities=6% Similarity=-0.101 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
.+..+..+.+.|++++|++.|..++.......+.... .+........ ...++..|+..|...|++
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~------~~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG---------ASVDDKRRNE------QETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS---------SSBCSHHHHH------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH---------HHHHHHHhhh------HHHHHHHHHHHHHHCCCH
Confidence 4455667778999999999999998765322211100 0000000000 013455677777777777
Q ss_pred HHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLS-SPNM----YICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
++|.+.|..+...-. .++. .+.+.+-..+...|++++|..+++...
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI 122 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 777777776554211 1111 123333344445577777777777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=64.13 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 400 (850)
+.+...+..+...+...|++++|...|++..+. .+.+...|..+...|...|++++|...+++..+.... +...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHH
Confidence 345677888889999999999999999988763 2336778888888999999999999999998876433 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8899999999999999999999988763 234456666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-06 Score=79.28 Aligned_cols=130 Identities=6% Similarity=-0.124 Sum_probs=73.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhh----------hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSG----------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~----------~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
.+...|++++|+..|+++++. .|+...+... ..++...+..+...|++++|+..+++.++.. |
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p--- 119 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--K--- 119 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T---
T ss_pred HHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c---
Confidence 344667777777777777742 3332111000 2345555556666777777777777666543 3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
.+..++..++.+|...|++++|+..|+...+..+ .+..++..+..++...++
T Consensus 120 ---------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 ---------------------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHH
Confidence 3335666777777888888888888887776432 356677777777777777
Q ss_pred HHHHH-HHHHHHHhCC
Q 003082 272 YMKSR-AIYEDLRSQN 286 (850)
Q Consensus 272 ~~~A~-~~~~~m~~~g 286 (850)
..++. ..|..|...|
T Consensus 172 ~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 172 ARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHC-------------
T ss_pred HHHHHHHHHHHHhccc
Confidence 76666 5555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00075 Score=69.77 Aligned_cols=183 Identities=9% Similarity=-0.042 Sum_probs=115.3
Q ss_pred hhHHHHHHHHH---hhcCChH-HHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhc-------CchhHHHHHHHHH
Q 003082 71 NDYYADMASKL---AKDGRLE-EFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE-------GRIDCVVGVLKKL 139 (850)
Q Consensus 71 ~~~~~~l~~~l---~~~g~~~-~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------g~~~~A~~~l~~~ 139 (850)
+..|..+.+.+ .+.|.+. +|+.+++.++.. +|..++..... ..++...... ..+++++.+++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~R---r~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCR---REVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHH---HHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 55555555443 4567766 899999999998 77777664332 2222221111 1267889999998
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC-hHHHHHHhhh
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD-VNLAIRYACI 216 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 216 (850)
+. ..|.. +.++..-...+...| .+++++.+++++++.. |.+..+|+.-.-++...|. +++++.++..
T Consensus 101 L~--~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 101 LR--VNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HH--HCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HH--hCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 84 46655 666666666666667 4889999999998865 7777777777666666666 4666666544
Q ss_pred ----CCCCcchHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 217 ----VPRADILFCNFVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 217 ----~p~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
-|.+..+|+.....+.+. +.++++++.++..+...+ -|..+|+-+-..+.+.
T Consensus 171 ~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 171 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSS
T ss_pred HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 366666666655555444 346666777666665422 3555555444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.8e-05 Score=70.10 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..|++.+... |+....+..++.++...|++++|+..|+.+ |.+..++..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4556666677778899999999998887765 666656666666666666666666655442 5555556666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
|...|++++|+..|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666665553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.5e-05 Score=66.06 Aligned_cols=90 Identities=11% Similarity=-0.026 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~ 232 (850)
.+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..++.+ |.+..++..++..|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34445556667788888888888777654 555444444444444444444444443331 333344444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 003082 233 KKRDLVSALRAYDASK 248 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~ 248 (850)
..|++++|+..|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.5e-05 Score=65.27 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=74.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+.++|++++|++.|+++++ +.|+. ..++.+.+..+...|++++|++.+++.++.. |+....+..++
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~--~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a--- 83 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIE--LDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLIA--- 83 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHH---
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHHH---
Confidence 34588999999999999884 46664 4566777777888899999998888877643 33333233222
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT 261 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 261 (850)
.+|..++..|...|++++|++.|+..+.. .||..+...
T Consensus 84 --------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 --------------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 35677888899999999999999988774 355544433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00016 Score=76.10 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC----------------HhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d----------------~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
+...+..+...|.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567788888999999999999999998874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHhh
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A-~~l~~~m~~ 461 (850)
++.++.... +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987543 78899999999999999999999999999864 44677888899999999999998 556666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0025 Score=65.78 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=60.9
Q ss_pred hcCchh-HHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCc----------HHHHHHHHHHHHhCCCCCCCccc
Q 003082 125 REGRID-CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE----------VEMFVGLMEVLEEFRLPVKELDE 193 (850)
Q Consensus 125 ~~g~~~-~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 193 (850)
+.|.++ +|++++++++ .+.|+.. .++..-...+...++ +++++.+++.++... |.+..+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~y------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~a 110 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT 110 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhH------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHH
Confidence 566666 8999999999 7788863 333322222222222 567778887777654 666655
Q ss_pred HHHHHHHHHcCCC--hHHHHHHhhhC----CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 003082 194 EFRIVQLCVNKPD--VNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKK 249 (850)
Q Consensus 194 ~~~l~~~~~~~~~--~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 249 (850)
|+.-...+...+. +++++.+++.+ |.+..+|+.-.-.+...|. ++++++.++.+++
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 6555444444432 34444433322 3444444444333444444 2444444444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.7e-05 Score=63.13 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=62.7
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 003082 189 KELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTI 262 (850)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 262 (850)
+....+..++..+...|++++|+.+++. .|.+..++..++..|...|++++|+..|++..+... . +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 3334444455555555555555554433 244456667777778888888888888887777532 3 46677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 003082 263 IDVCGIC-GDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 263 i~~~~~~-g~~~~A~~~~~~m~~~ 285 (850)
..++.+. |++++|.+.|+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7778888 8888888888777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=6.5e-05 Score=72.30 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=89.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+...|++++|+..|++.+... |............ ....+ ...++..+...|.+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~------~~~~~--------~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLD------KKKNI--------EISCNLNLATCYNKN 101 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHH------HHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHH------HHHHH--------HHHHHHHHHHHHHHh
Confidence 3445566667778899999999999988754 3221100000000 00000 015677899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhh--cCChHHHH-H
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTL-E 310 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~--~~~~~~a~-~ 310 (850)
|++++|+..|+..++.. +.+..++..+..+|...|++++|+..|+...+. .| +...+..+-.++ .++..++. .
T Consensus 102 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKL 178 (198)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998863 347788999999999999999999999998876 34 344444444432 23333333 4
Q ss_pred HHHHHHHcC
Q 003082 311 VYKNMQKLG 319 (850)
Q Consensus 311 l~~~m~~~g 319 (850)
.|..|...|
T Consensus 179 ~~~~~f~~~ 187 (198)
T 2fbn_A 179 TFGGMFDKG 187 (198)
T ss_dssp ---------
T ss_pred HHHHHhccc
Confidence 555554433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=9e-05 Score=65.16 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
..+..++..+...|++++|+..|.. .|.+..++..++..|.+.|++++|+..|+..++..+ .+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3466677888888888888888765 377778888888888888888888888888887532 35677888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 003082 268 ICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~ 285 (850)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.1e-05 Score=66.12 Aligned_cols=68 Identities=6% Similarity=0.018 Sum_probs=46.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.+..+|+.++.+|.+.|++++|+..|+..++..+. ++ ..+|..+..++...|++++|++.|++....
T Consensus 39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444466777777777888888888877777653211 11 236777777888888888888888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=67.10 Aligned_cols=94 Identities=6% Similarity=-0.082 Sum_probs=53.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+.+.|++++|+..+++.++.. |+.... +..+..++...|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a------------------------------~~~lg~~~~~~g~~ 67 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEA------------------------------WRSLGLTQAENEKD 67 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHH------------------------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHH------------------------------HHHHHHHHHHcCCH
Confidence 3344555667788888888888777654 555444 44455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
++|+..|++.++..+ .+...+..+..+|...|++++|+..|+...+
T Consensus 68 ~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 68 GLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555554321 2344555555555555555555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=61.89 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..+++..... |.+. ..+..++..|...|+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~~a~~~~~~~~ 53 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNH------------------------------VLYSNRSAAYAKKGD 53 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcH------------------------------HHHHHHHHHHHhhcc
Confidence 34444555566788888888888776543 4333 445555556666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|...|++..+..+ .+...+..+..++...|++++|...|+...+.
T Consensus 54 ~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666666655421 24555666666666666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00017 Score=66.92 Aligned_cols=106 Identities=7% Similarity=-0.095 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|..... +......+...|++++|+..|+++++. .|+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-- 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIY------LSNRAAAYSASGQHEKAAEDAELATVV--DPKY-- 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHH------HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC--
Confidence 778889999999999999999999999988 4443222 223334566889999999999999954 6654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
..++...+..+...|++++|+..|++.++.. |++...+
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 116 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE--GNGGSDA 116 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCCHH
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 5566777777888999999999999888765 5554433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.4e-05 Score=63.61 Aligned_cols=94 Identities=14% Similarity=-0.049 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CC--CcchHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PR--ADILFCNFVRE 230 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~--~~~~~~~li~~ 230 (850)
.+...+..+...|++++|+..+++.++.. |.....+..++..+...|++++|+.+++.. |. ...++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34445566778999999999999998765 677778889999999999999999988663 77 77889999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 003082 231 FGKK-RDLVSALRAYDASKKHLS 252 (850)
Q Consensus 231 ~~~~-g~~~~A~~~~~~m~~~g~ 252 (850)
|.+. |++++|++.|+...+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999988654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00031 Score=63.34 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++.. |..... ...+......+...|++++|+..|+++.+. .|+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQ---AVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGD-- 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCC--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccC--
Confidence 7788899999999999999999999999884 332111 122233344566899999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
...+...+..+...|++++|+..+++.+... |+....+..+.
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR 140 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 4556666777788999999999999988765 55544444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.001 Score=56.74 Aligned_cols=98 Identities=18% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 456777788888899999999999888763 2336677888888888899999999999888876432 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 404 LINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+...+...|++++|...|++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 888899999999999999888765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=64.67 Aligned_cols=108 Identities=13% Similarity=-0.046 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCh-h----hHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc---
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV-S----KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--- 142 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p-~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--- 142 (850)
...+...+..+.+.|+|++|+..|+++++..++. . .... .....+.+....+...|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5667788999999999999999999999984330 0 1111 11224445555677999999999999999953
Q ss_pred --CCCCccccchhhhHHH----HHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 143 --GVAPLELFDGSGFKLL----KNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 143 --~~~p~~~~~~~~~~~l----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+.|+. ..++ .+.+..+...|++++|+..|++.++..
T Consensus 90 ~~e~~pd~------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDE------GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCch------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 227764 4455 778888889999999999999987654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00033 Score=61.57 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=52.4
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
..+..+...|++++|+..++.++... |++... ..++..++..|.+.|++++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~---------------------------~~~~~~lg~~~~~~~~~~~ 57 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYT---------------------------PNALYWLGESYYATRNFQL 57 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTH---------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCccc---------------------------HHHHHHHHHHHHHhccHHH
Confidence 34455567788888888888877654 443310 0234445555555555555
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|+..|+...+..+ .+ ..++..+..++...|++++|...|+.+.+.
T Consensus 58 A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 58 AEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555554321 11 344555555555555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=63.44 Aligned_cols=95 Identities=14% Similarity=-0.048 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~- 300 (850)
..+..++..+.+.|++++|+..|+..++..+ .+...|..+..++...|++++|+..|++..+... -+...+..+-.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3466788889999999999999999998532 4788899999999999999999999999987632 134444444443
Q ss_pred -hcCChHHHHHHHHHHHHc
Q 003082 301 -NAHDLKFTLEVYKNMQKL 318 (850)
Q Consensus 301 -~~~~~~~a~~l~~~m~~~ 318 (850)
..|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 457999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=81.13 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=66.1
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHh---------hhhHHHHHHHHHHHhhhcCchhHHHH
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA---------SMLSLEMVASGIVKSIREGRIDCVVG 134 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~g~~~~A~~ 134 (850)
...|.. ...+..++..+.+.|+|++|+..|+++++.. |.... .......+.+....+.+.|++++|+.
T Consensus 262 ~~~~~~-a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 262 KEKLEQ-AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334444 6788899999999999999999999999873 32100 00111222333344556666666666
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.|+++++ +.|+. ..++...+..+...|++++|+..|++.++.
T Consensus 339 ~~~~al~--~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 339 CCDKALG--LDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHH--HSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666663 24433 344455555555566666666666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00099 Score=59.11 Aligned_cols=98 Identities=7% Similarity=-0.194 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
...+..++..+...|++++|+..|+..+...+ .+...|..+..+|...|++++|...|+...+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------- 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 35666777777788888888888877776532 356677777777777788877777777665431
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
+.+...+..+..+|...|++++|...|+...+.
T Consensus 74 --------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 224556667777777777777777777777664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=64.60 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..+++..... |... .++..++..|...|+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~------------------------------~~~~~la~~~~~~~~ 53 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNM------------------------------TYITNQAAVYFEKGD 53 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccH------------------------------HHHHHHHHHHHHhcc
Confidence 34444555666788888888887776543 3332 445556666666677
Q ss_pred hHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLS--SPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|+..|+...+... .++ ..++..+..+|...|++++|...|+...+.
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777776666655321 111 556666667777777777777777776664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00033 Score=74.76 Aligned_cols=120 Identities=10% Similarity=0.012 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH----------hhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF----------ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+..++..+.+.|++++|+..|+++++.. +... ........+.+....+.+.|++++|++.|++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567888999999999999999999999741 1100 011112333344445556677777777777776
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
.+.|+. ..++...+..+...|++++|+..|++.++.. |++...+..+..++.
T Consensus 301 --~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 301 --EIDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQ 352 (370)
T ss_dssp --TTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred --HhCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 345543 3445555555666677777777766666543 444333333333333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00061 Score=59.62 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---- 397 (850)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++...... .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 356677888888899999999999888763 234667788888888899999999999988876532 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|..+...+.+.|++++|...|++..+. .|+......+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 667888888899999999999999998875 3565555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.66 E-value=4.8e-05 Score=84.45 Aligned_cols=117 Identities=12% Similarity=-0.001 Sum_probs=73.8
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
...|++++|++.|+++++. .|+. ..++.+.+..+.+.|++++|++.+++.++..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------ 70 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELD------------------ 70 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------
T ss_pred HHhCCHHHHHHHHHHHHHh--CCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 3566677777777666643 4443 3445555555666666666666666665543
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYED 281 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 281 (850)
|.+..++..++.+|.+.|++++|++.|++..+..+ .+...+..+..+ +.+.|++++|++.+++
T Consensus 71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33346777888889999999999999998887543 233455555555 7888999999999884
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0013 Score=59.08 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.+...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|...+++..+.... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-D 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-C
Confidence 4567788888899999999999999998876 4565 577888888899999999999999998876432 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
...|..+..++...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 778888889999999999999999998875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0014 Score=58.14 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|...... .+.+...|..+...|...|++++|...+++..+.... +...|.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3445555555555555555555555555442 1223444555555555555555555555555543322 344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 403 SLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
.+..++...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.001 Score=75.11 Aligned_cols=169 Identities=8% Similarity=-0.083 Sum_probs=113.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc----------hhHHHHHHHHHHHcCCCCccccchh
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
....++|+..++.++.. +|..++.... ...++. ..|+ +++++++++++++ ..|..
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~---R~~~l~---~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~----- 106 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNC---RREVLQ---HLETEKSPEESAALVKAELGFLESCLR--VNPKS----- 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHH---HHHHHH---HHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTC-----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHH---HHHHHH---hcccccchhhhhhhHHHHHHHHHHHHH--hCCCC-----
Confidence 34456889999999998 7777666332 223332 2344 8999999999995 46765
Q ss_pred hhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC-ChHHHHHHhhhC----CCCcchHHH
Q 003082 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
+.++...+..+.+.| +++++++.++++++.. |.+..+|+.-..++...| .++++++++..+ |.+..+|+.
T Consensus 107 -y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 107 -YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp -HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 777777777777888 7799999999999876 777777877777766666 667777766553 555566666
Q ss_pred HHHHHHhc--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 227 li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
....+.+. +.+++|++.++..+...+ -|..+|+.+-..+.+.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 55555542 345666666666655321 244555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=75.64 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|++++.. .|.... +...|+++++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~--------------~~~~~~~~~~~~~l~------------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM--------------FQLYGKYQDMALAVK------------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH--------------HTCCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh--------------hhhcccHHHHHHHHH-------------
Confidence 455666777777777777777777777766 333210 112344444332221
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
..++.+++..+.+.|++++|+..+++.+... |++...++.++.+|...|++++|+..|+
T Consensus 230 ----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~ 288 (338)
T 2if4_A 230 ----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFR 288 (338)
T ss_dssp ----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234445555666777777777777766543 4444444444444444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.58 E-value=6.8e-05 Score=83.22 Aligned_cols=118 Identities=9% Similarity=-0.019 Sum_probs=83.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~ 243 (850)
.+.+.|++++|++.+++.++.. | .+..++..++..|.+.|++++|+..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~ 62 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--P------------------------------SNAIYYGNRSLAYLRTECYGYALGD 62 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--C------------------------------ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3446788888888888776543 3 3346788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH--hhcCChHHHHHHHHH
Q 003082 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (850)
Q Consensus 244 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~--~~~~~~~~a~~l~~~ 314 (850)
|++.++..+ .+..+|..+..+|...|++++|++.|++..+.... ++.......+. ...+++++|++.+++
T Consensus 63 ~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 63 ATRAIELDK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998642 46788999999999999999999999999875322 33333333331 223678888888873
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00065 Score=62.68 Aligned_cols=111 Identities=6% Similarity=-0.054 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC------ChhhH--h--hhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG------NVSKF--A--SMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~------~p~~~--~--~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+...+..+.+.|+|++|+..|+.++..-. .|... . .......+.+....+...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 67788999999999999999999999988610 11100 0 11123344445556778888888888888888
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
+. .|+. ..++...+..+...|++++|+..|++.+... |++.
T Consensus 91 ~~--~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 91 KR--EETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HH--STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred hc--CCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 43 5654 4556666777778888888888888877654 5443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.001 Score=60.61 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---- 397 (850)
..++..+...+...|++++|...|++..+...... ...-..++..+...|...|++++|...+++..+.... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888899999999999999998877533211 1111247888888999999999999999987653111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
...+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999988753 2111 134677888899999999999999987654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00097 Score=58.42 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-C-HHHHH--
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM---YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-N-IYVFN-- 295 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d-~~t~~-- 295 (850)
.+..++..+.+.|++++|+..|+.+.+..+. +. ..+..+..++.+.|++++|...|+...+..... . ...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4566788889999999999999999885432 23 578888899999999999999999998763221 1 22233
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcC
Q 003082 296 SLMNVNAHDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 296 ~ll~~~~~~~~~a~~l~~~m~~~g 319 (850)
..+....|++++|...|+.+.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 333345689999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00016 Score=78.25 Aligned_cols=102 Identities=7% Similarity=-0.082 Sum_probs=80.6
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHH
Q 003082 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC 162 (850)
Q Consensus 83 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~ 162 (850)
..|+|++|+.++++.++......+..++.....+.++...|..+|++++|+.+++++++....--...++.+...+.+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45899999999999998765544455666678888888899999999999999999986521111123566677888899
Q ss_pred HhhhhcCcHHHHHHHHHHHHhC
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
..|..+|++++|+.++++.++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=76.63 Aligned_cols=112 Identities=12% Similarity=-0.000 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+.+.|++++|+..|++.+... |....... +..... -+....+|+++..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~------------~~~~~~---~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSE------------KESKAS---ESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCH------------HHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCCh------------HHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 4455566667778888888888888877653 33310000 000000 000013444555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|++++|+..|+..++... .+...|..+..+|...|++++|+..|+...+
T Consensus 331 g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555554321 2444555555555555555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00034 Score=63.29 Aligned_cols=100 Identities=8% Similarity=-0.019 Sum_probs=66.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccc------cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC-----CCCCCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLEL------FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-----RLPVKE 190 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 190 (850)
.+...|++++|+..|+++++ +.|+.. ..+.-..++.+.+..+.+.|++++|+..+++.++. ...|+.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence 34578999999999999995 466521 01111227778888888999999999999988765 012443
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
...|. ..+++.+.++...|++++|+..|+..++
T Consensus 98 ~~A~~--------------------------~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 98 GKLWI--------------------------SAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHH--------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33330 0116666677777777777777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-05 Score=65.15 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=62.0
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
.|++++|+..|++.++.+.. |+.. .++..++..|.+.|++++|+..|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~ 52 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA------------------------------ECYLGLGSTFRTLGEYRKAEAVLAN 52 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH------------------------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57888889999888765311 2222 4555666667777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhhcCCh
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~ 305 (850)
.++..+ .+..++..+..++...|++++|+..|+...+.. -.|+...|...+..+.+.+
T Consensus 53 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 53 GVKQFP-NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHhCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 666432 345566666777777777777777776665542 1233444444554444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00043 Score=73.86 Aligned_cols=113 Identities=14% Similarity=-0.059 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
..+...+..+.+.|++++|+..|++.++.. +... ....... ....-|....+|.++...|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~-----------~~~~~~~---~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR-----------AAAEDAD---GAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH-----------HHSCHHH---HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc-----------cccChHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556667778899999999998877521 0000 0000000 00011222356667777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
++++|+..|++.++... .+..+|..+..+|...|++++|+..|++..+.
T Consensus 288 ~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777777777776432 35666777777777777777777777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00043 Score=63.92 Aligned_cols=114 Identities=10% Similarity=-0.061 Sum_probs=79.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC------CCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li 228 (850)
...+...+..+.+.|++++|+..|.+.+..- ..|.+. . ....-|....++.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~nla 70 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP----------------E----WVELDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH----------------H----HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH----------------H----HHHHHHHHHHHHHHHH
Confidence 3445556667778999999999999877541 001110 0 0001123336778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+...+. .|+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 88899999999999998888753 246778888888899999999999999888776 4543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0003 Score=76.31 Aligned_cols=108 Identities=8% Similarity=-0.015 Sum_probs=84.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhh
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (850)
..+..+..+|+|++|+.+++++++......+..++.....+.++...|..+|++++|+.+++++++.-...-...++.+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33556678899999999999999876444444466667888888888999999999999999998642111112356667
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHh
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (850)
..+.+++..|..+|++++|+.++++.++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7888899999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=62.76 Aligned_cols=89 Identities=7% Similarity=-0.170 Sum_probs=61.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++++ +.++ ++....++..++..+...|++++|+..+++.++.. |+..
T Consensus 2 ~~g~~~~A~~~~~~al~--~~~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~------------- 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA--SGLQ---GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQ------------- 61 (117)
T ss_dssp -----CCCHHHHHHHHS--SCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-------------
T ss_pred CCCcHHHHHHHHHHHHH--cCCC---CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCch-------------
Confidence 46899999999999995 3221 12235667778888889999999999999988765 5443
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.++..++.+|.+.|++++|+..|++.+..
T Consensus 62 -----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 62 -----------------ALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666777777777777777766654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00058 Score=73.91 Aligned_cols=101 Identities=7% Similarity=-0.086 Sum_probs=73.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+.+|+++++.....-...++.+..++.+++..|..+|++++|+.++++.++.....-+ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-------------~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-------------V 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-------------S
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-------------C
Confidence 568999999999999875333333346677888888889999999999999999987653211101 1
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
..++ ...++++|+..|..+|++++|+.+|++.++
T Consensus 377 ~Hp~-----------~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLN-----------VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChH-----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1111 126678889999999999999998887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00048 Score=72.54 Aligned_cols=145 Identities=10% Similarity=-0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
..+...+..+.+.|++++|+..|++.+... |+.. .+...+++.++...+.. .+|+++...|.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~--------~~~~~~~~~~~~~~l~~-----~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF--------MFQLYGKYQDMALAVKN-----PCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH--------HHTCCHHHHHHHHHHHT-----HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch--------hhhhcccHHHHHHHHHH-----HHHHHHHHHHHHcC
Confidence 345555666778888888888888877643 3221 12233444444433321 47888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHh---hcCChHHHHHH
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV---NAHDLKFTLEV 311 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~---~~~~~~~a~~l 311 (850)
++++|+..|+..++.. +.+...|..+..+|...|++++|+..|+...+. .|+. ..+..+-.. ..+..+.+..+
T Consensus 245 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 247788999999999999999999999988754 3432 333333332 23466677888
Q ss_pred HHHHHHc
Q 003082 312 YKNMQKL 318 (850)
Q Consensus 312 ~~~m~~~ 318 (850)
|..|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 8888754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0017 Score=70.47 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=76.4
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
+..+..+|++++|++.++++++.....-...++.+..++.+++..|..+|++++|+.++++.+......-+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-------- 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-------- 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--------
Confidence 445568899999999999998653333334466778888888888999999999999999876532111010
Q ss_pred HHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
..++ ...++++|+..|..+|++++|+.+|++..+
T Consensus 366 -----~Hp~-----------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 -----SHPV-----------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -----SCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 126678888999999999999988887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00053 Score=58.22 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC------cccH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE------LDEE 194 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 194 (850)
..+...|++++|+..|+++++. .|+. ..++.+.+..+...|++++|+..+++.+... |+. ...+
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITA--QPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 3456889999999999999854 5654 4556667777888899999999999988764 554 3344
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCC
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
..++.++...|+++.|+..++.+|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhH
Confidence 455555555555555554444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00052 Score=61.97 Aligned_cols=108 Identities=6% Similarity=-0.070 Sum_probs=60.0
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.+++++|++.++..++.. |++...+..++.++.+.++++.+.... +.+++|+..|++
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~ 71 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHH
Confidence 3478899999999888776 777777777777776665543111100 123455555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
.++..+ .+..+|..+..+|...| ++++|++.|++..+. .|+...|...+.
T Consensus 72 AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 72 ALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 554321 13444555555554442 555566655555544 444444444443
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00043 Score=55.12 Aligned_cols=63 Identities=25% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+||||++..+|...+..++.+.......... ...+.||||.|+||.. | .+.+|.+|.+.|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g-~~~v~II~GkG~hS~~-g--~~~Lk~~V~~~L~~ 64 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQG-G--VARIKPAVIKYLIS 64 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCC------------CHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCCC-C--cchHHHHHHHHHHh
Confidence 36899999999999988888766542221111 2358899999999863 4 26799999999997
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0015 Score=56.12 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
+|+..|++.++.. |++...+..++..+...|++++|+.+++.+ |....++..++..|...|++++|+..|+...
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666665543 555555555555555555555555544332 4444445555555555555555555555444
Q ss_pred h
Q 003082 249 K 249 (850)
Q Consensus 249 ~ 249 (850)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=66.22 Aligned_cols=175 Identities=14% Similarity=0.003 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCc----------HHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE----------VEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
...++|++.+++++ .+.|+. +.++......+...|+ ++++++.++.+++.. |++..+|+.
T Consensus 43 ~~~eeal~~~~~~l--~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~h 112 (567)
T 1dce_A 43 ELDESVLELTSQIL--GANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHH 112 (567)
T ss_dssp CCSHHHHHHHHHHH--HHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 34568899999999 457876 4555544444445555 888888888888765 666655555
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A 275 (850)
-+.++.+.+.+ +++++++.++.+.+... .|..+|+.-..++.+.| .++++
T Consensus 113 R~w~l~~l~~~----------------------------~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 113 RCWLLSRLPEP----------------------------NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHTCSSC----------------------------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHcccc----------------------------cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHH
Confidence 54444444411 34555555555555322 34445555544455555 55555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhh----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003082 276 RAIYEDLRSQNVTLNIYVFNSLMNVN----------------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (850)
Q Consensus 276 ~~~~~~m~~~g~~pd~~t~~~ll~~~----------------~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~ 339 (850)
++.++++.+..+ -|...|+..-.+. .+.++++++.+++..... +-|...|+.+-..+.+.++
T Consensus 164 l~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 164 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 555555544321 1223333222210 023566777777776654 4477788887777777777
Q ss_pred hHH
Q 003082 340 TVL 342 (850)
Q Consensus 340 ~~~ 342 (850)
.++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 544
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.001 Score=54.80 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
..+||||+...+|...+..++.+....+...... ..+.||||.|+||.... +.||.+|.+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~-~~v~IIhGkG~hS~~g~---~~Lk~~V~~~L~~ 72 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGK-PYLSVITGRGNHSQGGV---ARIKPAVIKYLIS 72 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCC-SEEEEECCCSGGGTTCT---TCHHHHHHHHHHH
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEECcCCCCCCCc---chHHHHHHHHHhh
Confidence 4689999999999999988888765432211112 36899999999997543 6799999999998
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.017 Score=51.44 Aligned_cols=110 Identities=8% Similarity=-0.041 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHH
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALR 242 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~ 242 (850)
+++++|++.|++..+.+. +... ++..|...+.+++|+++|++. ..+..+++.|...|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE----MFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC----TTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 578899999999888762 2223 777777777888888888764 3455777888888887 788888988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 003082 243 AYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 243 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 287 (850)
.|+...+.| +...+..|...|.. .+++++|...|+...+.|.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888764 56677788888877 7788888888888777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0031 Score=52.48 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=12.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
.+|..+..+|...|++++|+..|++.+
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444455555544444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0063 Score=50.59 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=56.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+..++..++..|.+.|++++|+..|+..++..+ .+...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567888999999999999999999999988643 3567899999999999999999999998764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0056 Score=52.31 Aligned_cols=77 Identities=6% Similarity=-0.109 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (850)
++|+..|+++. ...|+. ...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++
T Consensus 2 ~~a~~~~~~al--~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 2 QAITERLEAML--AQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHH--TTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHH--HhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 46788899988 557765 4566677777889999999999999998865 7778889999999999999999
Q ss_pred HHHHhhh
Q 003082 210 AIRYACI 216 (850)
Q Consensus 210 A~~~~~~ 216 (850)
|+..++.
T Consensus 72 A~~~~~~ 78 (115)
T 2kat_A 72 ARQAWES 78 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.041 Score=44.00 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 443 (850)
..|..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555666666666666665544321 45555666666666666666666666665542 22344444444444
Q ss_pred H
Q 003082 444 V 444 (850)
Q Consensus 444 ~ 444 (850)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.017 Score=48.42 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=59.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 003082 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (850)
Q Consensus 362 d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~ 434 (850)
+...|..+...+...|++++|...|++..+.... +...|..+..++.+.|++++|+..|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 3445666677777788888888888877765432 6677778888888888888888888888764 343 33
Q ss_pred HHHHHHHHHHHhCCHHHHH
Q 003082 435 CCNILLQACVEACQFDRAF 453 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~ 453 (850)
.+..+..++...|+.+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444555555444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.1 Score=46.11 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~ 379 (850)
+.++|++.|++..+.| .++.. |-..|...+.+++|.+.|++..+. -+...+..|-..|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 4445555555555554 22222 444444445555566666555441 244455555555555 5566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g 428 (850)
++|+..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666665554 45555555555555 556666666666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.05 Score=43.50 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 3556777888889999999999999988773 2335677888888999999999999999998876432 566676
Q ss_pred HHHHHHHHc
Q 003082 403 SLINACANA 411 (850)
Q Consensus 403 ~li~~~~~~ 411 (850)
.+...+.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.071 Score=55.21 Aligned_cols=129 Identities=9% Similarity=-0.064 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHhhhh--cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc----CCCh-------HHHHHHh---hh
Q 003082 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDV-------NLAIRYA---CI 216 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-------~~A~~~~---~~ 216 (850)
.+++.++.+-..+.+ .....+|+.+|++.++.. |+....+..+..+|.- .+.. ..+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 457776655433322 344588999999998865 7766555544444421 0000 0111111 11
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.|.+..++..+...+...|++++|...+++++... |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 24444444444444444555666665555555543 45445555555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.19 Score=51.98 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=88.3
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 207 VNLAIRYACIVPRADILFCNFVREFG--KKR---DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 207 ~~~A~~~~~~~p~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
..++.+.....|.+..+|...+.+.. ..+ ...+|+.+|++.++. .| ....|..+.-+|... .
T Consensus 180 ~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~----------~ 247 (372)
T 3ly7_A 180 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR----------H 247 (372)
T ss_dssp HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------h
Confidence 33444455556777777776554433 333 357899999999885 34 345555555444310 0
Q ss_pred HHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcc
Q 003082 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~ 360 (850)
..+ ..+...... ...+.+....+ ..-+.+..+|..+...+...|++++|...+++... +.
T Consensus 248 ---~~~-~~~~~~~~~--------l~~a~~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------Ln 307 (372)
T 3ly7_A 248 ---SQH-PLDEKQLAA--------LNTEIDNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGID------LE 307 (372)
T ss_dssp ---HHS-CCCHHHHHH--------HHHHHHHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HC
T ss_pred ---ccC-CCchhhHHH--------HHHHHHHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------cC
Confidence 000 000000000 01111110001 11245666676666666666777777777777776 34
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
|+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 308 ~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 308 MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 66667777777777777777777777777765 34555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.041 Score=49.52 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.+.+++|.+.++...+. -+.+...|..+-.++...++ +++|+..|++.++.... +...|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 3445667777777776663 13355666666666666654 45888888888876544 57788888
Q ss_pred HHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 405 INACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 405 i~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|...| ++++|+..|++.++. .|+...|...+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88887764 899999999999885 6777666555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.15 Score=50.61 Aligned_cols=53 Identities=6% Similarity=-0.052 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHH-hhhcC--------------chhHHHHHHHHHHHc
Q 003082 88 EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVK-SIREG--------------RIDCVVGVLKKLNEL 142 (850)
Q Consensus 88 ~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~g--------------~~~~A~~~l~~~~~~ 142 (850)
...+.+++.++.. +|.+-..+.....+...+.. ++... .+..|..+|.+..+.
T Consensus 49 P~~Lk~~e~Ll~~--~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y 116 (301)
T 3u64_A 49 PLVLKVYEALHLQ--NPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY 116 (301)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH
Confidence 3456677777777 67766565555555444433 33322 355677777776643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.017 Score=47.46 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcc-hHHHHHHHHHhcCChHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI-LFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~-~~~~li~~~~~~g~~~~A 240 (850)
+..+...|++++|+..+++.++.. |++ .. ++..++..|...|++++|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVG------------------------------KDEAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SST------------------------------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCc------------------------------HHHHHHHHHHHHHHcCCHHHH
Confidence 334556788888888888777653 433 24 566677777777888888
Q ss_pred HHHHHHHHhCC
Q 003082 241 LRAYDASKKHL 251 (850)
Q Consensus 241 ~~~~~~m~~~g 251 (850)
+..|++.++..
T Consensus 55 ~~~~~~al~~~ 65 (99)
T 2kc7_A 55 LNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88887777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.2 Score=40.59 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=53.6
Q ss_pred CCcchhhHHHHHHHHHhhcCC---hHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~---~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
+|++ +..+..++..+...+. .++|..++++.++. +|.....+..+ + ..+...|++++|+..|++++
T Consensus 2 ~p~~-~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~l---g---~~~~~~g~y~~Ai~~w~~~l-- 70 (93)
T 3bee_A 2 NAVT-ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLI---A---NDHFISFRFQEAIDTWVLLL-- 70 (93)
T ss_dssp CCCC-HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHH---H---HHHHHTTCHHHHHHHHHHHH--
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHH---H---HHHHHcCCHHHHHHHHHHHH--
Confidence 3444 7888888888865544 79999999999999 77765554432 2 23458999999999999999
Q ss_pred CCCCc
Q 003082 143 GVAPL 147 (850)
Q Consensus 143 ~~~p~ 147 (850)
...|.
T Consensus 71 ~~~p~ 75 (93)
T 3bee_A 71 DSNDP 75 (93)
T ss_dssp TCCCT
T ss_pred hhCCC
Confidence 44565
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.23 Score=58.82 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=86.6
Q ss_pred HhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 232 ~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
...+++++|.+ ++.. + ++......++..+.+.|.+++|+++.++-. ...-+....++++.|++
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD----------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH----------HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc----------hheehhhhcCCHHHHHH
Confidence 34567777765 3311 1 112223666666777777777776653211 11223344567777766
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
+.+.+ .+...|..|...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 65332 3677888888888888998888888887643 3445555555666666555554444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 391 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..|- ++.-..+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4331 233333445555666655555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.084 Score=43.11 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (850)
..+..+.+.|++++|+..|+...+..+ .+.. .|..+..+|...|++++|+..|+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778889999999999999988532 3567 89999999999999999999999988763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.67 E-value=2.5 Score=49.72 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=65.9
Q ss_pred hhcCcHHHHHH-HHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 003082 166 LDSGEVEMFVG-LMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 166 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (850)
...+++++|.+ ++..+ + +......+++.+...|.+++|+.+.+. . ..-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~-~~~~~~~~~~~l~~~~~~~~a~~~~~~----~---~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------E-GKDSLTKIARFLEGQEYYEEALNISPD----Q---DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------C-CHHHHHHHHHHHHHTTCHHHHHHHCCC----H---HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------C-chHHHHHHHHHHHhCCChHHheecCCC----c---chheehhhhcCCHHHHHHHH
Confidence 34688888877 54211 1 011125566777788888888876632 1 11233456778999998875
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 245 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 432 467789999999999999999999998764
|
| >3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.054 Score=47.31 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhhcccceEe
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQDDLGLKVF 786 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~~~~~~~~ 786 (850)
-.+||||+...+|...+..++..-... |. ..+.||+|.|.+|.... +.||.+|.+.|.. .+.|.
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL~~a~~~---g~---r~V~IIHGKG~gs~~~~---~vLk~~V~~wL~~--~~~V~ 111 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFIQQALAD---GL---RNVLIIHGKGRDDKSHA---NIVRSYVARWLTE--FDDVQ 111 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHHHHHHHT---TC---SEEEEECCCCSSTTSHH---HHHHHHHHHHHHT--STTEE
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHC---CC---CEEEEEECCCCCCCCch---HHHHHHHHHHHhc--CCcee
Confidence 368999999999998888877655443 43 35889999999986433 7899999999998 34444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=2.8 Score=41.54 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHHHHH
Q 003082 305 LKFTLEVYKNMQKLGVMAD---MASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFA 374 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd---~~t~~~Ll~~~~~~-----g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~~~~ 374 (850)
...|..++++.++. .|+ ...|..|...|.+. |+.++|.+.|++..+ +.| +..++......++
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~------LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR------YCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH------HCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH------hCCCCCchHHHHHHHHHH
Confidence 45567777777665 355 56788888888884 899999999999888 445 3667777778888
Q ss_pred hc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 003082 375 DA-KWWQMALKVKEDMLSAGVT--PNTITWSSL 404 (850)
Q Consensus 375 ~~-g~~~~A~~l~~~m~~~g~~--p~~~ty~~l 404 (850)
.. |+.+++.+.+++.+..... |+....+.+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 84 8899999999998887766 665544443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.72 Score=37.27 Aligned_cols=66 Identities=6% Similarity=-0.148 Sum_probs=41.9
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 219 RADILFCNFVREFGKKRD---LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 219 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.+...+..+..++...++ .++|..+|++.++..+ -++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334455555555544433 5777777777776432 35566666677777777777777777777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.35 Score=40.08 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...+.|+..+.+.|++..|...|+...+.- ..+...++..|..+|.+.|+++.|+..+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345567888888888888888888776531 1245677888888999999999999999888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.83 E-value=1.6 Score=39.87 Aligned_cols=98 Identities=9% Similarity=0.048 Sum_probs=69.8
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.|+++.|.++.+.+ ++...|..++......|+++.|.+.|....+ +..|.-.|.-.|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 579999999988765 3456799999999999999999999887644 45566666677777666655554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
....|- ++.-...+...|+++++.++|.+
T Consensus 86 A~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444331 34444455567888888888764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.23 E-value=1.5 Score=38.90 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--d~~ty~~li~~~~~~g~~~~A~ 603 (850)
...+.+-|.+....|. ++..+.-.+.+++++.+ +++++..+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456666666666555 67778778889999988 6679999999988754 34 2444555666789999999999
Q ss_pred HHHHHHHHCCCCCC
Q 003082 604 SLFEEMKHYQIQPN 617 (850)
Q Consensus 604 ~l~~~m~~~g~~p~ 617 (850)
++++.+.+ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 99999987 4674
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.32 E-value=4.8 Score=36.63 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
.|+++.|.++.+.+ .+...|..|-......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHHH
Confidence 45666666665544 2678899999999999999999999987543 4455556777888877
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
..++-+.....|- ++.-...+.-.|+++++.++|.+. |..|.... .....|-.+.|.++.+.+.
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 7766666555542 566666677789999998888543 32222111 1123566777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.86 E-value=1.9 Score=38.61 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=52.1
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
|..+-..+..-+..+...|.|+.|+.+.+-++... .+|+.+.....+..+.....++..+|.+..|...|++++..
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33335666777888999999999999999987653 23332223333444555566777999999999999998653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.80 E-value=1.5 Score=38.87 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=31.2
Q ss_pred cCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 361 LDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++..+.-.+..++++.+ +++++..+|++..+.+ .| +...+-.|.-+|.+.|++++|.+.++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444555554 3445555555555432 12 223333344444555555555555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=89.47 E-value=4.5 Score=33.09 Aligned_cols=69 Identities=10% Similarity=-0.049 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC--cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~--~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
+..-+-.|...+.+.|+++.|...|+...+...... -......|..+..+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344445566666666666666666666555321110 012234455555555555555555555555544
|
| >2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.41 Score=37.61 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=41.8
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+||||+...+|...+..+++.-... |. ..+.||.|.|. ..||..|.+.|..
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~---g~---~~v~IIHGkG~---------GvLr~~V~~~L~~ 57 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARAL---GL---STLRLLHGKGT---------GALRQAIREALRR 57 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHT---TC---SEEEEECCSTT---------SHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHC---CC---CEEEEEECCCc---------hHHHHHHHHHHhc
Confidence 58999999999988887777655544 42 26899999886 3799999999998
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=4.9 Score=42.41 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=77.5
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC--CCcccHHHHHHHHHcCCChHHHH-HHhhhCCCCcchHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV--KELDEEFRIVQLCVNKPDVNLAI-RYACIVPRADILFCNF 227 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~p~~~~~~~~l 227 (850)
+...+..++..+......|+.++|...+++.+..---+ .+.. ...+-.+. ..++.. ...+...+
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~--~~~a~~~~ 177 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED--KVLAHTAK 177 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH--HHHHHHHH
Confidence 44444555555544455688899999998887652111 1100 01111110 011000 00344567
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+..+...|++.+|+.....+.... +-+...|..+|.+|.+.|+..+|++.|+.+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999999887753 24888999999999999999999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.58 E-value=3.2 Score=36.37 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=43.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
..++.++|.++|+.+++.+-.- ...|-.-...-.++|++..|.+++......+..|...
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 3378889999998887653222 6667777777778899999999998888776555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.48 E-value=11 Score=32.30 Aligned_cols=137 Identities=8% Similarity=0.004 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
.|..++..++..+..+. .+..-||.+|--....-+-+-..++++.+-+. .|. ...|++..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-------FDi----------s~C~NlKr 79 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-------FDL----------DKCQNLKS 79 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-------SCG----------GGCSCTHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-------cCc----------HhhhcHHH
Confidence 36777778887777663 35666666665555555655555555554331 221 23444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
....+-.+- -+...+..-++.+..+|+-|+-.+++.++... .+|++...-.+..+|.+.|+..+|.+++.+..+
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444443331 24555667778888888888888888886443 477788888888899999999999999988887
Q ss_pred ccc
Q 003082 462 SKT 464 (850)
Q Consensus 462 ~~~ 464 (850)
.|.
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.72 E-value=5.7 Score=34.05 Aligned_cols=139 Identities=10% Similarity=0.097 Sum_probs=91.8
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
-.|..++..++..+..++ .+-.. ++-+ .|. ..+.-+.+-.+++++.+-.. |.. ...
T Consensus 19 ldG~v~qGveii~k~~~s--sni~E-----~NW~--ICN-iiD~a~C~y~v~vLd~IGki-FDi-------------s~C 74 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS--STKSE-----YNWF--ICN-LLESIDCRYMFQVLDKIGSY-FDL-------------DKC 74 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH--SCHHH-----HTHH--HHH-HHHHCCHHHHHHHHHHHGGG-SCG-------------GGC
T ss_pred HhhhHHHHHHHHHHHcCC--CCccc-----ccee--eee-cchhhchhHHHHHHHHHhhh-cCc-------------Hhh
Confidence 457888888887776643 11100 1111 122 22444445555556555322 111 134
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+....+..+..+..........++.+..+|+-++-.+++..+.. ..+|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 556666666666655556667778889999999999999999754 3457888888999999999999999999999998
Q ss_pred CCCC
Q 003082 285 QNVT 288 (850)
Q Consensus 285 ~g~~ 288 (850)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8863
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.51 E-value=8.7 Score=47.07 Aligned_cols=96 Identities=7% Similarity=0.102 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHhhhCC-----CC----------------------cchHHHHHHHHHhcCChHHHHH
Q 003082 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVP-----RA----------------------DILFCNFVREFGKKRDLVSALR 242 (850)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~p-----~~----------------------~~~~~~li~~~~~~g~~~~A~~ 242 (850)
++...+-+++++...|++++|..+|.++- .. ...|..++..|.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344556666666666666666665530 00 0123445566666666666665
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 243 AYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 243 ~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+-...++.....+ ...|..+...+...|++++|...+-.+...
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 5554443221111 124555666666666666666666555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.23 E-value=47 Score=37.13 Aligned_cols=251 Identities=8% Similarity=0.011 Sum_probs=139.3
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY--MK 274 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~ 274 (850)
-+..+.+.+++...+.++...|.+...-|....+....|+-.+|......+-..|. .....+..++..+.+.|.+ +.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHH
Confidence 45556678889988888876566666677788888889998777776666655443 2344677777777766643 23
Q ss_pred HHHHHHHHHhCCC-----------CcCHHH-HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCC
Q 003082 275 SRAIYEDLRSQNV-----------TLNIYV-FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI---LLKACCLAGN 339 (850)
Q Consensus 275 A~~~~~~m~~~g~-----------~pd~~t-~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~---Ll~~~~~~g~ 339 (850)
..+=++.+...|- .++... ...++... ++...+...... ..++...-.. -+.-+.+. +
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~-~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~-d 229 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA-NNPNTVLTFART-----TGATDFTRQMAAVAFASVARQ-D 229 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH-HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH-hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHhc-C
Confidence 3333333333321 111111 11111111 111111111111 1223322122 23333333 7
Q ss_pred hHHHHHHHHHHHHhhhcCCcccCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 340 TVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~~g~~~~d~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 417 (850)
.+.|...|....+. ..+.+... .+..+...+...+...++...+....... ++.......+....+.|+++.|
T Consensus 230 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 230 AENARLMIPSLAQA---QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhhc---cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 78898888877642 21222211 23333333444553556666666655433 3444444555555678999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 418 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
...|+.|.... .....-.--+-.++.+.|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886532 12233344455677789999999999998764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.13 E-value=30 Score=34.77 Aligned_cols=25 Identities=20% Similarity=-0.116 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhh
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
+..+..++..|.+.+++.+|..+|-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3455566666777777777766654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=86.00 E-value=0.00011 Score=77.24 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=70.3
Q ss_pred CCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
+..+.+.+..|+.++++.+..+...+|++.|-+.. ++..|..+|....+.|++++-+..+....+..-.| .+=+.|+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 34456778889999999999999999988775543 33567789999999999999999887766653334 4446889
Q ss_pred HHHHhcCCHHHHHHH
Q 003082 264 DVCGICGDYMKSRAI 278 (850)
Q Consensus 264 ~~~~~~g~~~~A~~~ 278 (850)
-+|++.+++.+-.++
T Consensus 124 ~ayAk~~rL~elEef 138 (624)
T 3lvg_A 124 FALAKTNRLAELEEF 138 (624)
T ss_dssp HHHHTSCSSSTTTST
T ss_pred HHHHhhCcHHHHHHH
Confidence 999999986554433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.67 E-value=12 Score=42.97 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHc------CCCC
Q 003082 75 ADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL------GVAP 146 (850)
Q Consensus 75 ~~l~~~l~~~g~-~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~------~~~p 146 (850)
..+...+...|+ ++.|+.+|+++... +|..-.... .. .+..+...+ +--+|+.++.+.++. ...+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~--~~---~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYK--TA---MITILDHIETKELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHH--HH---HHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHH--HH---HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 444555555566 58899999999887 554321110 01 111111222 223566666555431 2222
Q ss_pred cccc----chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 147 LELF----DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 147 ~~~~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.... .+....++.--+.-+...|+++-|+++-++.+... |....+|..|+..|...|+++.|+-.+...|.
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 2110 11111222222333456678888888877776654 77777777777777777777777766666663
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=12 Score=39.48 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003082 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCN 437 (850)
Q Consensus 366 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~ 437 (850)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677888999999999998887664 34888999999999999999999999988764 48999887643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.01 E-value=49 Score=35.36 Aligned_cols=172 Identities=8% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003082 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (850)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~ 337 (850)
....|...|-..|++.+|..++.++...-. +..+.. --...+..-++.|...
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~---------------~~~~~~-------------~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY---------------GSMEMS-------------EKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---------------SSSCHH-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------hcccHH-------------HHHHHHHHHHHHHHHC
Confidence 445677888888999999888888763200 000000 0123455667778888
Q ss_pred CChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHH
Q 003082 338 GNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLI----NACAN 410 (850)
Q Consensus 338 g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li----~~~~~ 410 (850)
+++..|..++..+..........|+ ...|..++..+...+++.+|.+.|.+..+. ...-|...+..++ .+..-
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence 9999998888876532222212222 245677777788889999988888777532 1111322222211 11111
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 003082 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA--CQFDRAFRLFR 457 (850)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~A~~l~~ 457 (850)
.+....-..++.........++...|..++.+|... .+++...+.|.
T Consensus 271 a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 271 SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 221112222222222222235667788888887653 34555555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.24 E-value=4.1 Score=36.44 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=69.6
Q ss_pred HHhhhcCchhHHHHHHHHHHHc-CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIV 198 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~ 198 (850)
..+...|.++.|+.+.+.+... +..|+......-+.++...+..+..+|++..|...|++.++.... +........+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3445789999999888886654 234443333444666777777788999999999999997654321 11110000000
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
.....+. -+. .+.+...-+-+...|.+.+++++|+.+++.+..
T Consensus 108 ---~~ss~p~----s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 108 ---NSASTPQ----SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ---ccCCCcc----ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000000 011 122224556688888899999999988876543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=82.71 E-value=24 Score=30.94 Aligned_cols=111 Identities=11% Similarity=-0.016 Sum_probs=71.4
Q ss_pred cCCcchhhHHHHHHHHHhhcCCh------HHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 65 RDLSSRNDYYADMASKLAKDGRL------EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~------~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
..|++ .+.|-..+..+-+.|.. +..+..|++++..- .|......-....+---+..+...++.++|.++|+.
T Consensus 8 ~~p~~-yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANN-PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp --CCS-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eCCCC-HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44555 77777777777777888 88889999988763 444322211111110012223455899999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+++. ...+ --+++..+.--.++|+...|.+++...+..+
T Consensus 86 a~~~---hKkF-----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 86 ARAN---CKKF-----AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHH---CTTB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHH---hHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 9864 2222 2334444455568999999999999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.71 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.42 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.17 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.92 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.86 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.85 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 97.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.41 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.18 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-17 Score=178.29 Aligned_cols=376 Identities=14% Similarity=0.095 Sum_probs=233.6
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
+..+.+.|++++|++.++++++.. |++...+..++..+.+.|++++|+.+++.+ |....++..++..|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 344556799999999999988765 777667777777777777777777766553 55666677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hhcCChHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~a~~l~~~m~ 316 (850)
++|+..|....+... .+...+..........+....+........................ ...+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 777777777666432 2333344444444444444444444444443322222222222222 23345555555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003082 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 396 (850)
... +-+...+..+...+...|++++|...++...+. -+-+...|..+...+...|++++|...++.....+..
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 235 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-
Confidence 432 234555666666666666777776666666552 1223445666666666666777776666666654432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCch
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~ 476 (850)
+...+..+...+.+.|++++|...|++..+.. +-+..++..+...|.+.|++++|.+.++...
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------- 298 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL---------------- 298 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh----------------
Confidence 45556666666666666666666666666542 2344556666666666666666666665433
Q ss_pred hhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556 (850)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 556 (850)
.. .+.+...+..+..
T Consensus 299 ----------------------------------------------------------------~~-~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 299 ----------------------------------------------------------------RL-CPTHADSLNNLAN 313 (388)
T ss_dssp ----------------------------------------------------------------HH-CTTCHHHHHHHHH
T ss_pred ----------------------------------------------------------------cc-CCccchhhhHHHH
Confidence 21 2235567777778
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 003082 557 ACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGS 633 (850)
Q Consensus 557 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~a~~~~g~ 633 (850)
.|.+.|++++|...|++..+. .| +..+|..+..+|.+.|++++|.+.|++..+ +.|+ ...|..+..++.+.|+
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 888888888888888887764 34 466778888888888888888888888875 4564 6667777776666553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.2e-16 Score=171.04 Aligned_cols=371 Identities=13% Similarity=0.069 Sum_probs=294.8
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.+.|++++|+..|+++.+. .|+. ..++...+..+...|++++|+..+++.++.. |+....+..++..+.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~--~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQ--EPDN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhh
Confidence 34789999999999999954 6765 4556666777888999999999999998876 888888999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003082 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 278 (850)
+.|++++|+..+... +................+....+............ ................+....+...
T Consensus 79 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHH
Confidence 999999999988664 55555566666677777777777777766655433 3445555666667788899999988
Q ss_pred HHHHHhCCCCcC-HHHHHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 003082 279 YEDLRSQNVTLN-IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (850)
Q Consensus 279 ~~~m~~~g~~pd-~~t~~~ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~ 355 (850)
+...... .|+ ...+..+-. ...++.+.|...+++..+.. +-+...|..+...+...|++++|...|......
T Consensus 158 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 232 (388)
T d1w3ba_ 158 YLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-- 232 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--
T ss_pred HHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--
Confidence 8887765 333 333333333 34579999999999988764 346778999999999999999999999998874
Q ss_pred cCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003082 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (850)
Q Consensus 356 ~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 435 (850)
...+...+..+...+.+.|++++|...|++..+.... +..+|..+...+...|++++|...++...... +.+...
T Consensus 233 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 307 (388)
T d1w3ba_ 233 ---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchh
Confidence 2456677888899999999999999999999886533 67889999999999999999999999988764 667788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCH
Q 003082 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515 (850)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (850)
+..+...+.+.|++++|.+.|++..+.
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~----------------------------------------------------- 334 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEV----------------------------------------------------- 334 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTS-----------------------------------------------------
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------------------------
Confidence 899999999999999999999876532
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003082 516 TTYNILMKACCTDYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVC 593 (850)
Q Consensus 516 ~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~ 593 (850)
.| +..++..+...|.+.|++++|...|++..+. .| +...|..+..+|
T Consensus 335 -----------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 335 -----------------------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTL 383 (388)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred -----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 12 3456777888899999999999999998874 45 467888888888
Q ss_pred HHcCC
Q 003082 594 VRSKR 598 (850)
Q Consensus 594 ~~~g~ 598 (850)
.+.|+
T Consensus 384 ~~~~D 388 (388)
T d1w3ba_ 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHcCC
Confidence 87775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.8e-11 Score=123.76 Aligned_cols=268 Identities=16% Similarity=0.047 Sum_probs=169.2
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR 235 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g 235 (850)
..+..+.+.|++++|+..|+++++.. |+...++..++..+...|++++|+..|.. -|.+...+..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 44556678899999999999988765 76666666666666666666666655543 2445555555666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHH
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m 315 (850)
++++|.+.|+...... |+.......................+.. + ...+...++.+.|.+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS---------------L--LSDSLFLEVKELFLAA 162 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH---------------H--HHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHH---------------H--HHhhHHHHHHHHHHHH
Confidence 6666666666555432 1110000000000000000000000000 0 0112455677777776
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003082 316 QKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (850)
Q Consensus 316 ~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 394 (850)
.+.. -..+..++..+...+...|++++|...|+..... .+-+...|..+...|...|++++|.+.|++..+...
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-----ccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 6543 2346778888889999999999999999998763 233577888999999999999999999999987643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQA----------GCEPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 395 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----------g~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
. +..+|..+..+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+..
T Consensus 238 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 238 G-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred c-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 5778999999999999999999999998763 111222345556666666676665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-10 Score=120.30 Aligned_cols=246 Identities=12% Similarity=0.025 Sum_probs=183.1
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
...+..+..+.+.|++++|+..|+.+ |.+..+|..++..|...|++++|+..|++..+..+ -+...|..+..+|.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 98 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccc
Confidence 44567788889999999999988764 77778899999999999999999999999887532 36778888889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
..|++++|.+.++..... .|+......... .. ....+.......+..+...+.+.+|.+.|
T Consensus 99 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRY--TPAYAHLVTPAE--------------EG---AGGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTGGGCC--------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHh--ccchHHHHHhhh--------------hh---hhhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 999999999999988764 222111000000 00 00001111112233344556778888888
Q ss_pred HHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
....+.. . -..+...+..+...+...|++++|...|++....... +..+|..+...|.+.|++++|.+.|++.++.
T Consensus 160 ~~al~~~--p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 160 LAAVRLD--P-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHS--T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHh--h-cccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 8877632 1 1345677888889999999999999999999876533 6888999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 428 g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
. +-+..++..+..+|.+.|++++|.+.|++..+.
T Consensus 236 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 236 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred h-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 335678899999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.1e-09 Score=110.84 Aligned_cols=325 Identities=11% Similarity=0.010 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
.....-.+..+...|++++|+.+|++.++.. |...... ....+......+...|++++|+..|+++.+. .+....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYS-RIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHhhcc
Confidence 5556666788899999999999999999874 3321111 1223333445667899999999999999854 222112
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.......+...+..+...|++.+|...+............. .. +.....+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~-------------~~-----------~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------------QL-----------PMHEFLVRIRAQL 142 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-------------TS-----------THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-------------hh-----------hHHHHHHHHHHHH
Confidence 23334556666777788899999998887765321000000 00 0001345567788
Q ss_pred HHhcCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChH
Q 003082 231 FGKKRDLVSALRAYDASKKHLS----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 306 (850)
+...|+++.|...+........ .....++..+...+...+++.++...+.+....
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------------------- 201 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL--------------------- 201 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------------------
Confidence 8899999999999988775422 234456667777788888988888887765431
Q ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~p--d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~ 384 (850)
+ ...+..+ ....+..+...+...|+++.|...+.......... .......+..+...+...|++++|..
T Consensus 202 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 272 (366)
T d1hz4a_ 202 -----L---GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQILLGEFEPAEI 272 (366)
T ss_dssp -----H---TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----H---HHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 0000000 12233444555566667777766666544321000 11123344555666677777777777
Q ss_pred HHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHHhCCHHH
Q 003082 385 VKEDMLS----AGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP----NSQCCNILLQACVEACQFDR 451 (850)
Q Consensus 385 l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p----~~~~~~~ll~~~~~~g~~~~ 451 (850)
.+++... .+..|+ ..++..+...|.+.|++++|.+.+++..+. |... ....+..++..+.+.++.++
T Consensus 273 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e 352 (366)
T d1hz4a_ 273 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 7766542 233332 345666667777777777777777765442 2211 12234445556666677666
Q ss_pred HHH
Q 003082 452 AFR 454 (850)
Q Consensus 452 A~~ 454 (850)
+.+
T Consensus 353 ~e~ 355 (366)
T d1hz4a_ 353 LEQ 355 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=7.9e-09 Score=105.90 Aligned_cols=202 Identities=8% Similarity=-0.017 Sum_probs=138.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLN 140 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~ 140 (850)
++..+|+- ..+|..+...+.+.+++++|+.+++.+++. +|..+..... .+.+ +...| ++++|+..+++++
T Consensus 35 ~I~~~p~~-~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~---r~~~---l~~l~~~~~eal~~~~~al 105 (315)
T d2h6fa1 35 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHF---RRVL---LKSLQKDLHEEMNYITAII 105 (315)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHH---HHHH---HHHTTCCHHHHHHHHHHHH
T ss_pred ccccCHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHH---HHHH---HHHhCcCHHHHHHHHHHHH
Confidence 44556665 788889999999999999999999999999 7777655332 2222 22445 5899999999999
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (850)
+ +.|+. ..++...+..+...|++++|++.++++++.. |++...|..++..+...|++++|+..++.+
T Consensus 106 ~--~~p~~------~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 106 E--EQPKN------YQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp H--HCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HHHhh------hhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 47765 6677777777888999999999999998765 777777777777777777777776666543
Q ss_pred -CCCcchHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 218 -PRADILFCNFVREFGKKRD------LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 218 -p~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+..+|+.+...+.+.+. +++|+..+...++..+ .+...|+.+...+... ..+++.+.++...+
T Consensus 176 ~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 176 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 5555666666665555544 4566666666655422 3455565555544333 24555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=5e-07 Score=93.43 Aligned_cols=245 Identities=7% Similarity=-0.099 Sum_probs=152.0
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
+..+...|++++|++++++.++.. |++.. ... ..++..++..|...|++++|+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~-~~~------------------------~~a~~~lg~~~~~~g~~~~A~ 71 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWF-YSR------------------------IVATSVLGEVLHCKGELTRSL 71 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCH-HHH------------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCc-HHH------------------------HHHHHHHHHHHHHCCCHHHHH
Confidence 444567899999999999887654 33211 000 035667888899999999999
Q ss_pred HHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 242 RAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 242 ~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~ 316 (850)
..|++..+.. ..+ ...++..+...+...|++..+...+..... +.....
T Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--------------------------~~~~~~ 125 (366)
T d1hz4a_ 72 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ--------------------------LINEQH 125 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HHHHTT
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhHhcc
Confidence 9998876531 111 234566777788888999999888876542 111111
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC
Q 003082 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GV 394 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~ 394 (850)
..........+..+...+...|+++.+...+..................+..+...+...+++..+...+.+.... ..
T Consensus 126 ~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 205 (366)
T d1hz4a_ 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 205 (366)
T ss_dssp CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 1111112234556677888889999999998887765433323333445566666677788888887777665432 11
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 395 TPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCE---PNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 395 ~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
... ...+..+...+...|+.++|...+....+.... .....+..+...+...|++++|...++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 277 (366)
T d1hz4a_ 206 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 277 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 223455555666777777777777665543211 12234455666777777777777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=6.1e-08 Score=99.10 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=129.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
+.+.+++++|++.++++++ +.|+. .+++...+..+...| ++++|+..++..++.. |+...+|..++..+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~--lnP~~------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIE--LNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHHHHHH--HCCCC------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHH
Confidence 3478899999999999994 58876 556666665565655 5899999999988766 77887888888888
Q ss_pred HcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 003082 202 VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD------ 271 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------ 271 (850)
...|++++|+.++..+ |.+..+|+.++..+.+.|++++|+..|+.+++..+ .+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhh
Confidence 8888888887776553 66777777788888888888888888887777532 356667766666555544
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003082 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVM-ADMASYNILLKAC 334 (850)
Q Consensus 272 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~ 334 (850)
+++|++.+....+.. +-+...|+.+...+. ...+++.+.++...+.... .+...+..++..|
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456666666655542 123444444333322 2344455555554443211 2333444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.1e-07 Score=94.18 Aligned_cols=151 Identities=8% Similarity=-0.103 Sum_probs=92.1
Q ss_pred cCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC
Q 003082 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP 205 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (850)
.++.+.|+.-+++++... + .+...-..++...+..|.+.|++++|+..|++.+... |+.+..++.++.++.+.|
T Consensus 12 ~~~~e~al~~~~e~l~~~--~--~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASR--A--LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp CHHHHHHHHHHHHHHTSS--C--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhh--h--cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHH
Confidence 345566677777776431 1 1122224556667777888889999998888888765 777767777777777777
Q ss_pred ChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 206 DVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 206 ~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
++++|+..|+.+ |....++..++..|...|++++|+..|+..++..+ .+......+...+.+.+..+.+..+...
T Consensus 86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777666553 55556666677777777777777777776665432 2333333333334444444444444444
Q ss_pred HH
Q 003082 282 LR 283 (850)
Q Consensus 282 m~ 283 (850)
..
T Consensus 165 ~~ 166 (259)
T d1xnfa_ 165 FE 166 (259)
T ss_dssp HH
T ss_pred hh
Confidence 33
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=7.8e-08 Score=95.23 Aligned_cols=117 Identities=12% Similarity=-0.050 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHHHHhCCCC--CCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLP--VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
.++.+.|+.-+++++..... +.....++.++..|.+.|++++|+..|+.+ |.+..+|+.++.+|.+.|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 34566777777777654321 223446677888888999999998888663 778888888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..|+++++..+ .+..++..+..+|...|++++|...|+...+.
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99998887543 35567888888888889999999998888765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=3.7e-06 Score=85.23 Aligned_cols=188 Identities=9% Similarity=0.023 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 377 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
+..++|..+|+...+...+-+...|...+..+.+.|+++.|..+|+.+++........+|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888887654444667778888888888889999998888886543333456788888888888888888888
Q ss_pred HHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-ccHHHHHHH
Q 003082 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKAL 535 (850)
Q Consensus 457 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~-~~~~~a~~l 535 (850)
+....... ..+......+.+.-.+ ++.+.|..+
T Consensus 158 ~~al~~~~----------------------------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 158 KKAREDAR----------------------------------------------TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HHHHTSTT----------------------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHhCC----------------------------------------------CcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77654321 1122222222222222 355566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG-MSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 536 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|+.+.+. .+.+...|...++.+.+.|+++.|..+|++..+.. ..|+ ...|...+.--...|+.+.+.++++++.+
T Consensus 192 ~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 192 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666553 22244556666666666666666666666655532 2222 34555555555555666666666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=5.4e-08 Score=100.71 Aligned_cols=262 Identities=7% Similarity=-0.054 Sum_probs=135.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHH----HHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEM----VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..+.......+..++|+.+++.++.. +|+.+..+..... +......+...|.+++|+.+++++++ ..|+.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~--~~pk~-- 106 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKS-- 106 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTC--
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH--hCCCc--
Confidence 33444444445568999999999988 6665443221111 11111123355678888888888884 35654
Q ss_pred chhhhHHHHHHHHhhh--hcCcHHHHHHHHHHHHhCCCCCCCcccHH-HHHHHHHcCCChHHHHHHhhhC----CCCcch
Q 003082 151 DGSGFKLLKNECQRLL--DSGEVEMFVGLMEVLEEFRLPVKELDEEF-RIVQLCVNKPDVNLAIRYACIV----PRADIL 223 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~----p~~~~~ 223 (850)
...+...+..+. ..+++++|+..++++++.. |+....+. ..+..+...+.++.|+.+++.+ |.+..+
T Consensus 107 ----~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a 180 (334)
T d1dcea1 107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (334)
T ss_dssp ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred ----HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence 334444333333 3445888888888887754 44444332 3445555566666666665443 444455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 303 (850)
|+.+...+.+.|++++|...+....+. .|+ ...+...+...+..+++...+....
T Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l-------------------- 235 (334)
T d1dcea1 181 WHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWL-------------------- 235 (334)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHH--------------------
Confidence 666666666666666555444332221 011 0111122223333334444443333
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
... +++...+..+...+...|+.++|...+.+.... -+.+..+|..+...|...|++++|.
T Consensus 236 -------------~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~eA~ 296 (334)
T d1dcea1 236 -------------LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE-----NKWCLLTIILLMRALDPLLYEKETL 296 (334)
T ss_dssp -------------HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHCTGGGHHHHH
T ss_pred -------------HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHCCCHHHHH
Confidence 322 233334444455555555666665555544331 1112344555555556666666666
Q ss_pred HHHHHHHHC
Q 003082 384 KVKEDMLSA 392 (850)
Q Consensus 384 ~l~~~m~~~ 392 (850)
+.+++..+.
T Consensus 297 ~~~~~ai~l 305 (334)
T d1dcea1 297 QYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=6.3e-06 Score=83.46 Aligned_cols=188 Identities=16% Similarity=0.078 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHH
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~ 314 (850)
+..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+.+.+........
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~---------------------- 135 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL---------------------- 135 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH----------------------
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHH----------------------
Confidence 3457788888888765444566677777888888888888888888877542211122
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCC
Q 003082 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 315 m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g 393 (850)
+|..++..+.+.|+.+.|.++|+.+.+. .+.+...|...... +...|+.+.|.++|+.+....
T Consensus 136 -----------~w~~~~~~~~~~~~~~~ar~i~~~al~~-----~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~ 199 (308)
T d2onda1 136 -----------VYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp -----------HHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh
Confidence 3444444444445555555555544431 11122222222211 222345555555555555432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 394 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
.-+...|...++.+.+.|+++.|..+|++..+.. ..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 200 -p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 200 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp -TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234555555555555555555555555554432 1221 23455555544555555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=1.4e-06 Score=87.58 Aligned_cols=217 Identities=11% Similarity=-0.019 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
+.+.|...+..|...|++++|+..|+++.+....... .......+......|.+.|++++|++.|+++.+. .+..-
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~--~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--~~~~~ 111 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRG 111 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--hhhcc
Confidence 3788999999999999999999999999876321111 1111334455556677999999999999998854 22211
Q ss_pred cchhhhHHHHHHHHhh-hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHH
Q 003082 150 FDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li 228 (850)
.......++..++..+ ...|++++|++.+++..+... ..++...+ ..++..++
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~----------------~~~~~~~~----------~~~~~~la 165 (290)
T d1qqea_ 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA----------------QDQSVALS----------NKCFIKCA 165 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----------------HTTCHHHH----------HHHHHHHH
T ss_pred cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH----------------hcCchhhh----------hhHHHHHH
Confidence 1222344455555444 345899999998887654210 01111100 13456677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cC---HHHHHHHH
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSS-----PNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFNSLM 298 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd---~~t~~~ll 298 (850)
..|...|++++|+..|+++...... ... ..+...+..+...|++..|...|+...+.... ++ ......++
T Consensus 166 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~ 245 (290)
T d1qqea_ 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence 7777777777777777776654211 111 22334444556677777777777776654221 11 22344455
Q ss_pred Hhhc----CChHHHHHHHHHHH
Q 003082 299 NVNA----HDLKFTLEVYKNMQ 316 (850)
Q Consensus 299 ~~~~----~~~~~a~~l~~~m~ 316 (850)
.++. +.+++|+..|+++.
T Consensus 246 ~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 246 DAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHhcCHHHHHHHHHHHHHHh
Confidence 5442 24566666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=4.1e-07 Score=93.84 Aligned_cols=258 Identities=9% Similarity=-0.062 Sum_probs=154.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH---c-------CCChHHHHHHhhh----CCCCcchHHHHHHHHHh
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV---N-------KPDVNLAIRYACI----VPRADILFCNFVREFGK 233 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-------~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~ 233 (850)
.+..++|+++++++++.. |+....|+.....+. . .+.+.+|+.+++. -|++..++..++.++..
T Consensus 42 ~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 344589999999998766 887777765444332 2 2335667766655 36777777777777766
Q ss_pred cCC--hHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHH
Q 003082 234 KRD--LVSALRAYDASKKHLSSPNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308 (850)
Q Consensus 234 ~g~--~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a 308 (850)
.++ +++|+..+..+.+... ++...+. .....+...+.+++|+..++.+.+... -+...|+.+-.+ ..+++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHH
Confidence 654 7788888888777532 3455544 344566677888888888887776532 234444443332 22344333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
...+....+. .|+ ...+...+...+..+++...+...... -+++...+..+...+...++.++|...+.+
T Consensus 198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG-----RAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS-----CCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3222221111 000 112233345556666676666665542 133444566666677777888888888877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 003082 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQA 442 (850)
Q Consensus 389 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~ 442 (850)
....... +..+|..+...+.+.|++++|.+.|+...+. .|+ ...|+.+...
T Consensus 268 ~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~ 319 (334)
T d1dcea1 268 LEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSK 319 (334)
T ss_dssp HCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred HHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHH
Confidence 7654322 4566777778888888888888888888775 453 3344544433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=1e-05 Score=80.94 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=105.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH----LSS-PNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
.+|..++..|.+.|++++|+..|+...+. |.. ....++..+...|-. .|++++|++.|++..+
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~----------- 146 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE----------- 146 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH-----------
Confidence 45677788888888888888888765542 110 113345555655543 5788888877776442
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cccCH-hHHHHHHHH
Q 003082 296 SLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDV-FTYSTIVKV 372 (850)
Q Consensus 296 ~ll~~~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~~d~-~ty~~li~~ 372 (850)
++. ..+.++ -..++..+...+...|++++|...|+++........ ..... ..|..++..
T Consensus 147 ---------------l~~---~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
T d1qqea_ 147 ---------------WYA---QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (290)
T ss_dssp ---------------HHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred ---------------HHH---hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHH
Confidence 111 111111 134577788899999999999999998876422111 11111 123344556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 003082 373 FADAKWWQMALKVKEDMLSAGVT-PN---TITWSSLINACAN--AGLVEQAMHLFEEML 425 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g~~-p~---~~ty~~li~~~~~--~g~~~~A~~l~~~m~ 425 (850)
+...|+++.|...+++..+.... ++ ......++.++-. .+.+++|+..|+.+.
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 67789999999999988765321 11 2244566666654 245788888776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.6e-05 Score=73.84 Aligned_cols=123 Identities=7% Similarity=-0.064 Sum_probs=94.9
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
+..+...|++++|++.|+++ .++.+..++.++..+...|++++|+..|... |....+|+.++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 34456789999999999854 2445667888999999999999999988764 77788899999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 003082 238 VSALRAYDASKKHLSS--------------P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (850)
++|+..|+..+..... . ...++..+..++.+.|++++|.+.|+...+....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999887653110 1 13456677778889999999999988877654433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1e-05 Score=68.22 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR 235 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g 235 (850)
..+..+.+.|++++|+..|.+.++.. |++...+..++.++...|++++|+..+.. -|.+...|..++.+|...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 34455667788888888888887654 65554454444444444444444444333 1444444444444444444
Q ss_pred ChHHHHHHHHHHHh
Q 003082 236 DLVSALRAYDASKK 249 (850)
Q Consensus 236 ~~~~A~~~~~~m~~ 249 (850)
++++|+..|+..++
T Consensus 86 ~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 86 RFEEAKRTYEEGLK 99 (117)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.3e-05 Score=72.79 Aligned_cols=119 Identities=11% Similarity=-0.020 Sum_probs=97.3
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|++.|.++. .|+ ..++.+.+..+...|++++|++.|++.++.. |+.+..++.++.++.
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~-------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPH-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCC-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHH
Confidence 348899999999997642 222 2356778888999999999999999999876 888999999999999
Q ss_pred cCCChHHHHHHhhhC----CCC----------------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003082 203 NKPDVNLAIRYACIV----PRA----------------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 254 (850)
+.|++++|+..|+.. +.+ ..++.++...|.+.|++++|.+.|....+..+.+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999887663 221 1456788999999999999999999988865444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.5e-05 Score=71.52 Aligned_cols=89 Identities=10% Similarity=-0.036 Sum_probs=67.4
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g 235 (850)
..+..+.+.|++++|+..|++.++.. |+....|..++..|...|++++|+..|+.+ |.+..+|..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 33445667899999999999988865 777777777777777777777777776653 666677777777777777
Q ss_pred ChHHHHHHHHHHHhC
Q 003082 236 DLVSALRAYDASKKH 250 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~ 250 (850)
++++|+..|++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 777777777777764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=3.1e-05 Score=65.20 Aligned_cols=105 Identities=10% Similarity=-0.071 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 74 ~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
+..-+..+...|++++|+..|+.+++. +|..+.... .....+...|++++|+..|.++++. .|+.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~------~~a~~~~~~~~~~~A~~~~~~al~~--~p~~----- 70 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYS------NRSAAYAKKGDYQKAYEDGCKTVDL--KPDW----- 70 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHHTCHHHHHHHHHHHHHH--CTTC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhh------cccccccccccccccchhhhhHHHh--ccch-----
Confidence 345677788888888888888888877 555443322 2223455778888888888888843 5654
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
...+...+..+...|++++|+..+++.++.. |++...+..
T Consensus 71 -~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 110 (117)
T d1elwa_ 71 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEG 110 (117)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHH
T ss_pred -hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 4556677777778888888888888877654 655444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.7e-05 Score=69.84 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=85.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+.+.|++++|+..|+++++. .|+. ...+...+..+...|++++|+..|++.++.. |....++..++.++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~--~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIEL--NPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhhhcccc--chhh------hhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHH
Confidence 345899999999999999954 6765 5567777778889999999999999999876 88888999999999
Q ss_pred HcCCChHHHHHHhhhC----CCCcchHHHHHHH--HHhcCChHHHHH
Q 003082 202 VNKPDVNLAIRYACIV----PRADILFCNFVRE--FGKKRDLVSALR 242 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~----p~~~~~~~~li~~--~~~~g~~~~A~~ 242 (850)
...|++++|+..++.+ |.+..++..+... ....+.+++|..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988764 6665555444332 223334444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.92 E-value=1.3e-05 Score=66.89 Aligned_cols=90 Identities=7% Similarity=-0.081 Sum_probs=56.8
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
..+..+.+.|++++|+..+++.+... |+.+ .+|..++.+|.+.|++++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~------------------------------~a~~~lg~~~~~~~~~~~ 68 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PERE------------------------------EAWRSLGLTQAENEKDGL 68 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccc------------------------------hhhhhhhhhhhhhhhHHH
Confidence 34455667778888888777776654 5443 555566666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
|+..|+..++..+ .+..+|..+..+|...|++++|++.|++.
T Consensus 69 A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 69 AIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccc-ccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665421 34556666666666666666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=4.1e-05 Score=71.53 Aligned_cols=98 Identities=7% Similarity=-0.041 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+.+.|+|++|+..|+.++.. +|..... +......|.+.|++++|+..|++++ .+.|+.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~------~~~lg~~y~~~~~~~~Ai~~~~~al--~l~p~~-- 71 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVY------YTNRALCYLKMQQPEQALADCRRAL--ELDGQS-- 71 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHhHHHHHhhhhhhhhhhHHHHHHH--HhCCCc--
Confidence 556778899999999999999999999988 5554332 2233345679999999999999998 667865
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
..++...+..+...|++++|+..|++.++.
T Consensus 72 ----~~a~~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 72 ----VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 566777888888999999999999987754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.86 E-value=3.1e-05 Score=72.34 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+.+.|++++|+..|++.+... |+.+ .+|+.++.+|.+.|+
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~------------------------------~~~~~lg~~y~~~~~ 53 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVA------------------------------VYYTNRALCYLKMQQ 53 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCH------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------------------------HHHHhHHHHHhhhhh
Confidence 34455666777788888888888776654 5544 455555555666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+++|+..|+..++..+ -+..+|..+..+|.+.|++++|+..|+...+
T Consensus 54 ~~~Ai~~~~~al~l~p-~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 54 PEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666554321 2445556666666666666666666655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.0049 Score=59.60 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=22.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 286 (850)
..++..|...+......+ +......+...+.. ..+.+.|...++...+.|
T Consensus 51 ~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 51 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHhhccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 345555555555554432 22233333333322 234555555555555444
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=8.6e-06 Score=63.21 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=49.9
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+||||++..+|...+..++............ ...+.||||.|+||.. | .+.+|.+|.+.|.+
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~-~~~l~IItG~G~hS~~-g--~~~lk~~V~~~L~~ 65 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQG-G--VARIKPAVIKYLIS 65 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEEECCCSGGGTT-C--TTCHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcCC-ceEEEEEECCCCCCCC-C--cchHHHHHHHHHHH
Confidence 37999999999999999888876654433332 2358899999999974 3 27899999999977
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.81 E-value=4.4e-05 Score=63.57 Aligned_cols=92 Identities=14% Similarity=-0.018 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-- 300 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-- 300 (850)
....++..+.+.|++++|+..|++.++..+ -+..+|..+..++.+.|++++|+..|+...+.. +-+...|..+-.+
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 345678889999999999999999988642 378899999999999999999999999988763 2235555555444
Q ss_pred hcCChHHHHHHHHHHH
Q 003082 301 NAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~ 316 (850)
..|+.++|++.|++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 3479999999998753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.015 Score=55.86 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
..+..|+..+.+.+++++|++.|+...+.| +..++..|...|.. ..++..|...+......+. |........
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~a~~~l~~ 78 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cchhhcccc
Confidence 467788888889999999999999998865 56666677777776 5689999999999887763 222221111
Q ss_pred HHhh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHH
Q 003082 298 MNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (850)
Q Consensus 298 l~~~----~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~l 369 (850)
+... ..+.+.|...++...+.|. ......+...+.. ......|...+..... ..+...+..|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~L 148 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGCTIL 148 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-------ccccchhhhh
Confidence 2211 2477889999999888763 2333333333332 3456666676666543 3466777777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 370 VKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (850)
Q Consensus 370 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~ 441 (850)
...|.. ..+...+...++...+.| +......+-..|.. ..++++|..+|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777775 567888888888888765 56666666666665 568999999999999887 4556666766
Q ss_pred HHHH----hCCHHHHHHHHHHHhhccc
Q 003082 442 ACVE----ACQFDRAFRLFRSWTLSKT 464 (850)
Q Consensus 442 ~~~~----~g~~~~A~~l~~~m~~~~~ 464 (850)
.|.+ ..+.++|.+.|+.....|.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6664 3378999999998876653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=5.1e-05 Score=82.14 Aligned_cols=216 Identities=7% Similarity=-0.062 Sum_probs=119.9
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+++...|+. ..++..++..+...|++++| |++++.. +|......-.... + -...+..+++.+++..
T Consensus 11 qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-------L-w~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 11 QAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-------L-WNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-------H-HHHHTHHHHHHHHHHH
T ss_pred HHHHcCCCC-HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHH-------H-HHHHHHHHHHHHHHhc
Confidence 355566666 66667788888888999876 8888877 5542211100000 0 1123567788888877
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--C
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--P 218 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p 218 (850)
+....++... ....+. .......+.++.|+..+....+ ..|+....+..++..+.+.|+.+.|...+... +
T Consensus 77 k~~~~~~~~~---~~~~~~--~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 77 KNRANPNRSE---VQANLS--LFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp SCSSCTTTTH---HHHHHH--HHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH
T ss_pred ccccCccHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 5443343311 111111 1112234666777766665443 34677777888999999999999998876553 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 003082 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (850)
Q Consensus 219 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 298 (850)
....++..++..+...|++++|+..|.+..+.. +.+...|+.|...|...|+..+|...|.+..... .|-..++..|.
T Consensus 150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 223567889999999999999999999998853 2466889999999999999999999999888653 35556666665
Q ss_pred H
Q 003082 299 N 299 (850)
Q Consensus 299 ~ 299 (850)
.
T Consensus 228 ~ 228 (497)
T d1ya0a1 228 K 228 (497)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00027 Score=63.68 Aligned_cols=29 Identities=7% Similarity=-0.140 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.++..++.+|...|++++|+..|+..++.
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555556666666666666665553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00013 Score=66.29 Aligned_cols=134 Identities=7% Similarity=-0.033 Sum_probs=95.2
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChH--HHHHHhhhCCCCcch
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN--LAIRYACIVPRADIL 223 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~p~~~~~ 223 (850)
|+...+..-+......+..+...|++++|.+.|.+.+... +....... ..+.+- .+..+- +....+
T Consensus 2 ~~~~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~~-------~~~~w~~~~r~~l~---~~~~~a 69 (179)
T d2ff4a2 2 PDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDDL-------RDFQFVEPFATALV---EDKVLA 69 (179)
T ss_dssp CGGGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGGG-------TTSTTHHHHHHHHH---HHHHHH
T ss_pred CchhccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccccccC-------cchHHHHHHHHHHH---HHHHHH
Confidence 4444566668888888888999999999999999988753 22211000 001110 011110 111256
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~ 292 (850)
+..++..+.+.|++++|+..++.+++..+ -+...|..++.+|.+.|++.+|++.|+++.+ .|+.|...
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 77899999999999999999999998532 4888999999999999999999999999753 46666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.60 E-value=0.00056 Score=61.39 Aligned_cols=81 Identities=10% Similarity=-0.118 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
++.+.+..|.+.|++++|+..++..+... |+ +..+|..++.+|...|+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~------------------------------~~~a~~~~~~~~~~l~~ 113 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD--SA------------------------------NEKGLYRRGEAQLLMNE 113 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc--cc------------------------------hHHHHHHHHHHHHHcCC
Confidence 34444455556666666666666655433 33 33555666666667777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
+++|+..|+.+++..+ .+..+...+-.+..+.+
T Consensus 114 ~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 114 FESAKGDFEKVLEVNP-QNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 7777777777666432 34444444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00024 Score=60.56 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=72.7
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+...|++++|+..|.++++ +.|+. ..++.+.+..|...|++++|++.++++++.. |.....+..++
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~--~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--~~~~~~~~~~a--- 79 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKE--LDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIA--- 79 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHH---
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhC--cccHHHHHHHH---
Confidence 34588999999999999995 46764 4567777777888899999999999887654 44444444333
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+|..++..+...+++++|+..|+..+..
T Consensus 80 --------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 80 --------------------KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35667888888999999999999887764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.0007 Score=60.80 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
...+...+..+...|+|++|+..|++++..
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~ 56 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 56 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344567788889999999999999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00012 Score=61.72 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=59.7
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhc---CcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDS---GEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
.+...+++++|.+.|++++. +.|+. .+++.+.+..+.+. +++++|+.++++++... |.+.
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~--~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~------- 70 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKA--AGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEE------- 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHH-------
T ss_pred HhcCHHHHHHHHHHHHHHHh--hCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCch-------
Confidence 44466788888888888884 45654 45556666656543 34456788787766543 2110
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
...++..|+.+|.+.|++++|++.|+.+++.
T Consensus 71 ---------------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 71 ---------------------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 0135677888888888888888888888874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.42 E-value=0.00088 Score=58.94 Aligned_cols=107 Identities=7% Similarity=-0.073 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH--------hhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF--------ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
...+..-+..+.+.|+|++|+..|+.++..-...... ...+....+.+....|.+.|++++|++.++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~- 95 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 95 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc-
Confidence 3455667888999999999999999998753211100 0111122333344445555666666666666553
Q ss_pred CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+.|+. ..++...+..+...|++++|+..|+..++..
T Consensus 96 -~~p~~------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 96 -IDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp -HSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -ccchh------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 24443 3445555555555566666666665555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.41 E-value=0.0014 Score=59.15 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=42.3
Q ss_pred HHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003082 196 RIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKK-----HLSSPNMYI 258 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 258 (850)
.++..+...|++++|+..++. -|.+...|..++.+|.+.|++.+|++.|+++.+ .|+.|...+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 344444444444444444333 255668888899999999999999999988743 588887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.39 E-value=0.064 Score=52.94 Aligned_cols=269 Identities=9% Similarity=0.039 Sum_probs=158.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+.+.|.++.|..+|..+.. + -.+...+.+.+++.+|++++.+. +....|..+..+|
T Consensus 23 ~c~~~~lye~A~~lY~~~~d-------------~---~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNVSN-------------F---GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 79 (336)
T ss_dssp ------CTTTHHHHHHHTTC-------------H---HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCC-------------H---HHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHH
Confidence 34478999999999986652 1 12223445678899998887754 3445788888888
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
.+......|.-..........-...++..|...|.+++...+++..... ...+...++.++..|++.+. ++..+.+..
T Consensus 80 ~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 80 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp HHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHh
Confidence 8877776654432222233344567889999999999999999987643 34577788899998988653 333333322
Q ss_pred HHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc
Q 003082 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (850)
Q Consensus 282 m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~ 361 (850)
.. -.- +.+.+.++ ..+.+. |.-++-.|.+.|.++.|..+.-. ..+
T Consensus 158 ~s---~~y--------------~~~k~~~~---c~~~~l------~~elv~Ly~~~~~~~~A~~~~i~---------~~~ 202 (336)
T d1b89a_ 158 FW---SRV--------------NIPKVLRA---AEQAHL------WAELVFLYDKYEEYDNAIITMMN---------HPT 202 (336)
T ss_dssp HS---TTS--------------CHHHHHHH---HHTTTC------HHHHHHHHHHTTCHHHHHHHHHH---------STT
T ss_pred cc---ccC--------------CHHHHHHH---HHHcCC------hHHHHHHHHhcCCHHHHHHHHHH---------cch
Confidence 21 111 22222222 222222 34566677778888777655321 234
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS-------------LINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 362 d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~-------------li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
++.-....+..+.+..+.+...++....++. .|+ ..+. ++.-+-+.+++.-....++...+.+
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Confidence 4444555666666666666666666655542 232 2233 3444445555555555555555444
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 429 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
+..+.+++...|...++++.-.+..+
T Consensus 279 ---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 45688999999999999766544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0002 Score=77.20 Aligned_cols=117 Identities=9% Similarity=-0.090 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
++...+..+...+.+.|+.++|...+....+. .+ ..++..+...+...|++++|...|.+..+.... +...|
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~ 189 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY------IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPY 189 (497)
T ss_dssp -------------------------CCHHHHH------HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC------CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHH
Confidence 34566777778888889998888877765542 11 346777888889999999999999998876433 56789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+.|...+...|+..+|...|.+.+... .|-..++..|...+.+..
T Consensus 190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 190 NQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999988764 677778888887776543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0012 Score=55.25 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003082 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW---WQMALKVKEDMLSAGVTPN-TITWSS 403 (850)
Q Consensus 328 ~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~ty~~ 403 (850)
..|++.+...+++++|.+.|+..... -+.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 45778888889999999999988874 24466778888888877554 4568999998877654444 246778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
+..+|.+.|++++|...|+++++. .|+..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 888999999999999999999885 46544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00055 Score=58.20 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.+..++..+..+|.+.|++++|+..|+++++.... +. ..+|..+...+...+++++|++.|+.....
T Consensus 35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 445567778888888888888888888887763211 11 246777777888888888888888876643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.00072 Score=60.73 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=51.0
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 193 EEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
.+..++.++.+.|++++|+..+..+ |....+|..++.+|.+.|++++|+..|+..++..+ .+..++..+..+..+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444555555555666555555443 55557778888888888888888888888887532 355666666665544
Q ss_pred cCCHH
Q 003082 269 CGDYM 273 (850)
Q Consensus 269 ~g~~~ 273 (850)
.....
T Consensus 158 l~~~~ 162 (169)
T d1ihga1 158 IKAQK 162 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.011 Score=52.70 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cc---------cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LK---------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~---------~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 396 (850)
+......+.+.|++++|...|.+......... .. .-..+|+.+..+|.+.|++++|+..++..+.....
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 33445567778888888888877765421110 00 01246777888899999999999999999987533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+...|..+..+|...|++++|...|++..+.. +-|......+-...-+.+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998863 224444444444433333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.08 E-value=0.00039 Score=60.63 Aligned_cols=124 Identities=7% Similarity=-0.035 Sum_probs=69.8
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.+.+++|+..|+..++.. |+++..+..++.++...+++..+.+ ..+.+++|+..|+.
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e--------------------~~~~~~~Ai~~~~k 66 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD--------------------AKQMIQEAITKFEE 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH--------------------HHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH--------------------HHHHHHHHHHHHHH
Confidence 4577899999999998876 8888888888877765443322211 12334556666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m 315 (850)
.++..+ .+..+|..+..+|...| .+++|.+.|+...+. .|+...+..-+..+ ..|.+++.+.
T Consensus 67 Al~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----~ka~~~~~e~ 139 (145)
T d1zu2a1 67 ALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----AKAPQLHAEA 139 (145)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----HTHHHHHHHH
T ss_pred HHHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----HHHHHHHHHH
Confidence 555321 24455555555554443 245566666665544 45544444444332 2344555555
Q ss_pred HHcC
Q 003082 316 QKLG 319 (850)
Q Consensus 316 ~~~g 319 (850)
.+.|
T Consensus 140 ~k~~ 143 (145)
T d1zu2a1 140 YKQG 143 (145)
T ss_dssp HHSS
T ss_pred HHHh
Confidence 4444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.03 E-value=0.0048 Score=54.96 Aligned_cols=115 Identities=13% Similarity=0.003 Sum_probs=80.7
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+.+.|++.+|+..|+..+..-....... . ........+ ...+|+++..+|.+.|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~-~-----------~~~~~~~~~-----~~~~~~Nla~~~~~l~~~ 80 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS-E-----------KESKASESF-----LLAAFLNLAMCYLKLREY 80 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-H-----------HHHHHHHHH-----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc-h-----------hhhhhcchh-----HHHHHHhHHHHHHHhhhc
Confidence 33445556678999999999988664310000000 0 000011111 115677899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
++|+..++..++.. +.+..+|..+..+|...|++++|+..|+...+. .|+..
T Consensus 81 ~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~ 132 (168)
T d1kt1a1 81 TKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNK 132 (168)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH
T ss_pred ccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999864 357889999999999999999999999999976 45443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.97 E-value=0.084 Score=52.06 Aligned_cols=230 Identities=11% Similarity=0.110 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
||..--..+.+.|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+++.... +..+|
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-------------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~ 72 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLASTLVHLGEYQAAVDGARKAN------STRTW 72 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-------------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-------------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHH
Confidence 455555566777778888888888887543 26677777888888888888776542 66788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhh
Q 003082 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (850)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 481 (850)
..+...|.+.....-| .+.......+......++..|-..|.+++...+++......
T Consensus 73 k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~------------------ 129 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE------------------ 129 (336)
T ss_dssp HHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST------------------
T ss_pred HHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC------------------
Confidence 8888888777665443 22223344566666778888888888888888887654221
Q ss_pred hhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCCC--------HHHHH
Q 003082 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPN--------HISWT 552 (850)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~-~~~~a~~l~~~m~~~g~~p~--------~~ty~ 552 (850)
..+...++.++..|++ +.++..+.+..... .+.+. ...|.
T Consensus 130 ------------------------------~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~ 178 (336)
T d1b89a_ 130 ------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWS-RVNIPKVLRAAEQAHLWA 178 (336)
T ss_dssp ------------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST-TSCHHHHHHHHHTTTCHH
T ss_pred ------------------------------ccchHHHHHHHHHHHHhChHHHHHHHHhccc-cCCHHHHHHHHHHcCChH
Confidence 3455567777777776 33333333322211 11111 11245
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003082 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (850)
Q Consensus 553 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g 632 (850)
-++..|.+.|.+++|..+ |.+. .++..-....+..+.+.++.+...++.....+. .|+ ..+.++......-
T Consensus 179 elv~Ly~~~~~~~~A~~~---~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~ 249 (336)
T d1b89a_ 179 ELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRL 249 (336)
T ss_dssp HHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCHHHHHHH---HHHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCC
Confidence 566666777777766544 3332 344444556677788888888777777666552 343 2355555554444
Q ss_pred C
Q 003082 633 S 633 (850)
Q Consensus 633 ~ 633 (850)
+
T Consensus 250 d 250 (336)
T d1b89a_ 250 D 250 (336)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.97 E-value=0.011 Score=51.57 Aligned_cols=97 Identities=12% Similarity=-0.012 Sum_probs=70.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 330 Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-----------d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 398 (850)
-...+.+.|++.+|...|.+...........+ ...+|+.+..+|.+.|++++|+..+...++.+.. +.
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ 101 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NV 101 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch-hh
Confidence 34556677888888877777665321111111 1346677788888889999999999888876533 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 399 ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 399 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.+|..+..++...|++++|+..|+...+.
T Consensus 102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 102 KALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888999999999999999888875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.92 E-value=0.00056 Score=66.28 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=47.0
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
.+++|++++|+..|++.++ ..|+. ......++..|+..|++++|+..++...+.. |+....+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l 70 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQL 70 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 3478999999999999884 47765 5556666677778899999999998887764 5544333333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.83 E-value=0.00044 Score=67.04 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=69.9
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
.++|++++|+..+++.++.. |++...+..++..++..|++++|+..++.. |.....+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 46799999999999988876 877777777777777777777777766553 444455555555544443333332
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.-+......+.+++...+......+...|++++|.++++++.+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2111111111112233344445556667777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.75 E-value=0.0055 Score=53.77 Aligned_cols=114 Identities=10% Similarity=-0.111 Sum_probs=75.8
Q ss_pred hhHHHHH--HHHHhhcCChHHHHHHHHHHHHhcCC-hhhH---hhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC-
Q 003082 71 NDYYADM--ASKLAKDGRLEEFAMIVESVVVSEGN-VSKF---ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG- 143 (850)
Q Consensus 71 ~~~~~~l--~~~l~~~g~~~~A~~l~~~~~~~~~~-p~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~- 143 (850)
..+|..+ +..+...|+|++|+..|++.++...+ |+.. ........+.+....|...|++++|+..++++++..
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3455555 66778889999999999999987532 1110 011113344556667889999999999999998531
Q ss_pred --CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 144 --VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 144 --~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.............++.+.+..|...|++++|+..|++.++.
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111112233445667778888899999999999887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.58 E-value=0.0066 Score=52.43 Aligned_cols=97 Identities=6% Similarity=-0.075 Sum_probs=63.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
|.+.+.+++|+..|+..++.. +.+..++..+..+|...+++..+.+-.+. +++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~-----------------------~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQM-----------------------IQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHH-----------------------HHHHHH
Confidence 556677999999999998854 24777888888888776655544433222 234667
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGN-----------TVLAQEIYGEVKH 352 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~-----------~~~A~~i~~~m~~ 352 (850)
.|++.++.. +.+..+|..+..+|...|+ +++|.+.|+...+
T Consensus 63 ~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 777776654 4466777777777765543 4555666665555
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.99 E-value=0.053 Score=47.03 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHH--HHHHHHcCChHHHHHHHHHHHHhhhcCCccc-------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 326 SYNIL--LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-------DVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 326 t~~~L--l~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-------d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
+|..+ ...+...|++++|...|.+..++.....-.. ....|+.+..+|.+.|++++|...+++.+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 44444 3445566777777777777766432210000 12345555555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.0078 Score=47.47 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=19.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+++.|+.+|.+.|++++|+..|+++++.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 45566666666777777777777666664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.011 Score=46.61 Aligned_cols=73 Identities=8% Similarity=-0.044 Sum_probs=53.0
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCcc-ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLE-LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
..+.++|++++|+..|+++++.. |.. .......+++.+++..+.+.|++++|+..+++.++.. |+...+..++
T Consensus 13 ~~~~~~g~y~~A~~~~~~Al~~~--~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~Nl 86 (95)
T d1tjca_ 13 KVAYTEADYYHTELWMEQALRQL--DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGNL 86 (95)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH--hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 34569999999999999998642 211 1122334667777888889999999999999998865 7665555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.34 E-value=0.76 Score=37.88 Aligned_cols=108 Identities=9% Similarity=-0.022 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHH
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALR 242 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~ 242 (850)
.++++|++.|++..+.+. ......++. ....+.++|+.++... ..+..+...|...|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE----MFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC----hhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 467888888888776652 222333322 2233445555554443 2222334444444433 234455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 003082 243 AYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 243 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 285 (850)
+|+...+.| +...+..|...|.. ..+..+|.+.|+...+.
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 555554433 22333333333333 12444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.68 E-value=1.6 Score=35.81 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHhCC
Q 003082 236 DLVSALRAYDASKKHL 251 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g 251 (850)
++++|+..|.+..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555544443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.18 E-value=7.6 Score=30.78 Aligned_cols=137 Identities=8% Similarity=0.009 Sum_probs=84.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
.|..++..+++.+..+. .+..-||.+|--....-+-+-..+.++.+-+. .|. ...+++..
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-------FDl----------s~C~Nlk~ 74 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-------FDL----------DKCQNLKS 74 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-------SCG----------GGCSCTHH
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-------cCc----------hhhhcHHH
Confidence 35667777777777653 35556666665555555555555555554331 121 12333333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
....+-.+- -+...+..-++.+.++|+-|+-.++++++.+.+ ++++...-.+..+|.+.|...++-+++.+..+
T Consensus 75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333332221 134455666777888888888888888877654 77777788888888888888888888888877
Q ss_pred ccc
Q 003082 462 SKT 464 (850)
Q Consensus 462 ~~~ 464 (850)
.|.
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 664
|