Citrus Sinensis ID: 003084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850
Protein Sequence
MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccccccccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHcccccccccEEEccccEEEEEccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccHHccccccccccccccccccccccccccccccccccEEEEEEEEEccEEEEEcHHHHcccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHEEEHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHHccccccEEEEccccccccccccHHHHcccccccEEEEccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccccEEEEccccccccccccHHHHcccccEEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccEEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccHHccccccEEEEEccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEEEEHHHHccccccc
Coil and Loop (DISEMBL)
mgsfpslntlhlesnnftaTLTTTQelhnftnleyltlddsSLHISLLQSIGsifpslknlsmsgcevngvlsgqgfphfksleHLDMRFARIALNTSFLQIIGEsmpslkylslsgstlgtnssrildqglcplahlqelyidnndlrgslpwclanttslrILDVSfnqltgsisssplvhltsieelrlsnnhfripvsleplfnhsklkifdaknneingeineshsltpkfqlkslslssnygdsvtfpkflyhqHELKEAELSHIKMIGefpnwllenntkLEFLYLVNdslagpfrlpihshkrlrfldvsnnnfqghipveigdilpSLVYFNIsmnaldgsipssfgnVIFLQFLDlsnnkltgeipdhLAMCCVNLEFLSlsnnslkghiFSRIFSLRNLRWLLLEgnhfvgeipqslskcsslkglylnnnnlsgkiprwlgnlkglqhivmpknhlegpipvefcrldslqildisdnnisgslpscfyplsikqVHLSKNmlhgqlkegtffncsslvtldlsynylngsipdwidgLSQLSHLNLAHNNLEGEVPIQLCRlnqlqlldlsdnnlhglipscfdnttlhesynnnsspdkpfktsfsisgpqgsvEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDlscnklvghippqignltRIQTLNlshnnltgtipltfsnlrhIESLDLSynklsgkiprqlvDLNTLAIFIVAYNnlsgkipewTAQFATfnkssydgnpflcglplpicrslatmseastsnegddnlidmdsFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
mgsfpslntlhleSNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPslkylslsgstlgtnssRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVnleflslsnnslKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIqlcrlnqlqlldlsdnnlHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
***********LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI******************LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL***************************EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLAT************NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN*SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG****************************DSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISEMBL)
MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
**SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	850	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.804	0.547	0.306	3e-68
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.749	0.508	0.299	3e-67
Q9LJF3	1164	Receptor-like protein kin	no	no	0.754	0.550	0.315	4e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.808	0.623	0.319	5e-61
Q9C9H7	847	Receptor-like protein 12	no	no	0.770	0.773	0.300	2e-60
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.627	0.466	0.330	2e-60
Q9FL28	1173	LRR receptor-like serine/	no	no	0.669	0.485	0.318	4e-60
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.707	0.502	0.301	5e-58
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.794	0.578	0.282	8e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.789	0.590	0.295	4e-57

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  260 bits (665), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 245/799 (30%), Positives = 378/799 (47%), Gaps = 115/799 (14%)

Query: 132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
           L  L +++ L I +N+L G +P  L N  +L++L ++  +LTG I S  L  L  ++ L 
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLI 197

Query: 192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN--------------ESHSLTPKF- 236
           L +N+   P+  E L N S L +F A  N +NG I                ++SLT +  
Sbjct: 198 LQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 237 -------QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN--WLLENNTK 287
                  QL+ LSL +N    +  PK L     L+  +LS   + GE P   W   N ++
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGL-IPKSLADLGNLQTLDLSANNLTGEIPEEFW---NMSQ 312

Query: 288 LEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 346
           L  L L N+ L+G     I S +  L  L +S     G IPVE+     SL   ++S N+
Sbjct: 313 LLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC-QSLKQLDLSNNS 371

Query: 347 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 406
           L GSIP +   ++ L  L L NN L G +   ++    NL++L L +N+L+G +   I +
Sbjct: 372 LAGSIPEALFELVELTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISA 430

Query: 407 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 466
           LR L  L L  N F GEIPQ +  C+SLK + +  N+  G+IP  +G LK L  + + +N
Sbjct: 431 LRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQN 490

Query: 467 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFF 525
            L G +P        L ILD++DN +SGS+PS F +   ++Q+ L  N L G L + +  
Sbjct: 491 ELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD-SLI 549

Query: 526 NCSSLVTLDLSYNYLNGS-----------------------IPDWIDGLSQLSHLNLAHN 562
           +  +L  ++LS+N LNG+                       IP  +     L  L L  N
Sbjct: 550 SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKN 609

Query: 563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDNTTLHESYNNN--SSPDKPFKTS 618
            L G++P  L ++ +L LLD+S N L G IP          H   NNN  S P  P+   
Sbjct: 610 QLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGK 669

Query: 619 FSISGP--------------------------------QGSVEKKILEIFEFTTKNI-AY 645
            S  G                                  GS+ ++I  +      N+   
Sbjct: 670 LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKN 729

Query: 646 AYQGRV------LSLLAGLDLSCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFS 698
            + G +      LS L  L LS N L G IP +IG L  +Q+ L+LS+NN TG IP T  
Sbjct: 730 QFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIG 789

Query: 699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 758
            L  +E+LDLS+N+L+G++P  + D+ +L    V++NNL GK+ +   QF+ +   S+ G
Sbjct: 790 TLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLG 846

Query: 759 NPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNP 818
           N  LCG PL  C  +     ++   +G    +   S  I   IS +  I  +++V+ +  
Sbjct: 847 NTGLCGSPLSRCNRV----RSNNKQQG----LSARSVVIISAISALTAIGLMILVIAL-- 896

Query: 819 YWRRRWLYLVEMWITSCYY 837
           ++++R  +  ++   S  Y
Sbjct: 897 FFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  257 bits (657), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 227/757 (29%), Positives = 345/757 (45%), Gaps = 120/757 (15%)

Query: 131 GLCP-----LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185
           GL P     L  LQ L + +N+L G +P  + N TSL +   +FN+L GS+ +  L  L 
Sbjct: 182 GLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLK 240

Query: 186 SIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 243
           +++ L L +N F   IP  L  L +   L +     N++ G I     LT    L++L L
Sbjct: 241 NLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLI--PKRLTELANLQTLDL 295

Query: 244 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR 303
           SSN    V   +F +  ++L+   L+  ++ G  P  +  NNT L+ L+L    L+G   
Sbjct: 296 SSNNLTGVIHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIP 354

Query: 304 LPIHSHKRLRFLDVSNNNFQGHIP------VEIGDI-----------------LPSLVYF 340
             I + + L+ LD+SNN   G IP      VE+ ++                 L +L  F
Sbjct: 355 AEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEF 414

Query: 341 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
            +  N L+G +P   G +  L+ + L  N+ +GE+P  +   C  L+ +    N L G I
Sbjct: 415 TLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEI 473

Query: 401 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG------- 453
            S I  L++L  L L  N  VG IP SL  C  +  + L +N LSG IP   G       
Sbjct: 474 PSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALEL 533

Query: 454 -----------------NLKGLQHI----------VMP-------------KNHLEGPIP 473
                            NLK L  I          + P             +N  EG IP
Sbjct: 534 FMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIP 593

Query: 474 VEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVT 532
           +E  +  +L  L +  N  +G +P  F  +S +  + +S+N L G +       C  L  
Sbjct: 594 LELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKLTH 652

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592
           +DL+ NYL+G IP W+  L  L  L L+ N   G +P ++  L  +  L L  N+L+G I
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query: 593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 652
           P    N     + N   +          +SGP  S   K+ ++FE               
Sbjct: 713 PQEIGNLQALNALNLEEN---------QLSGPLPSTIGKLSKLFE--------------- 748

Query: 653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
                L LS N L G IP +IG L  +Q+ L+LS+NN TG IP T S L  +ESLDLS+N
Sbjct: 749 -----LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHN 803

Query: 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICR 771
           +L G++P Q+ D+ +L    ++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C 
Sbjct: 804 QLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCN 860

Query: 772 SLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIF 808
              + ++ S S +    +  + S      +  VI++F
Sbjct: 861 RAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  236 bits (603), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 325/694 (46%), Gaps = 53/694 (7%)

Query: 159 TTSLRILDVSF--NQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKI 214
           +T L ++ V+F  N+L G + SSP      I  + LSNN F   IP +    F +S LK 
Sbjct: 147 STCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNS-LKH 205

Query: 215 FDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 273
            D   N + G+ +  S  L     + SLS +S  GD   FP  L +   L+   LS   +
Sbjct: 206 LDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDR--FPVSLSNCKLLETLNLSRNSL 263

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
           IG+ P                 D   G F       + LR L +++N + G IP E+  +
Sbjct: 264 IGKIPG----------------DDYWGNF-------QNLRQLSLAHNLYSGEIPPELSLL 300

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
             +L   ++S N+L G +P SF +   LQ L+L NNKL+G+    +      +  L L  
Sbjct: 301 CRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPF 360

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPR 450
           N++ G +   + +  NLR L L  N F GE+P    SL   S L+ L + NN LSG +P 
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQV 508
            LG  K L+ I +  N L G IP E   L  L  L +  NN++G +P   C    +++ +
Sbjct: 421 ELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETL 480

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
            L+ N+L G L E +   C++++ + LS N L G IP  I  L +L+ L L +N+L G +
Sbjct: 481 ILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQ 625
           P +L     L  LDL+ NNL G +P    +        + S     F   +      G  
Sbjct: 540 PSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 626 GSVE-----KKILEIFEFT-TKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQI 673
           G VE      + LE F    +      Y G  + + +       LDLS N + G IP   
Sbjct: 600 GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGY 659

Query: 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733
           G +  +Q LNL HN LTGTIP +F  L+ I  LDLS+N L G +P  L  L+ L+   V+
Sbjct: 660 GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMD 793
            NNL+G IP +  Q  TF  + Y  N  LCG+PLP C S +  + +    +       M 
Sbjct: 720 NNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMS 778

Query: 794 SFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 827
           +  +   +  V++I  +     V    ++R  Y+
Sbjct: 779 AGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  236 bits (603), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 236/738 (31%), Positives = 346/738 (46%), Gaps = 51/738 (6%)

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
           G N S  L   +C L  L++L +  N + G +P  L+   SL +LD+  N+  G I    
Sbjct: 76  GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ- 134

Query: 181 LVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 238
           L  + ++++L L  N+    IP  +  L +  +L I+   +N + G I    S+    QL
Sbjct: 135 LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIY---SNNLTGVI--PPSMAKLRQL 189

Query: 239 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
           + +    N G S   P  +     LK   L+   + G  P  L E    L  L L  + L
Sbjct: 190 RIIRAGRN-GFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRL 247

Query: 299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 358
           +G     + +  RL  L +  N F G IP EIG  L  +    +  N L G IP   GN+
Sbjct: 248 SGEIPPSVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNL 306

Query: 359 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
           I    +D S N+LTG IP       +NL+ L L  N L G I   +  L  L  L L  N
Sbjct: 307 IDAAEIDFSENQLTGFIPKEFGHI-LNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
              G IPQ L     L  L L +N L GKIP  +G       + M  N L GPIP  FCR
Sbjct: 366 RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR 425

Query: 479 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
             +L +L +  N +SG++P       S+ ++ L  N L G L     FN  +L  L+L  
Sbjct: 426 FQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNLTALELHQ 484

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP---- 593
           N+L+G+I   +  L  L  L LA+NN  GE+P ++  L ++   ++S N L G IP    
Sbjct: 485 NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT----TKNIAYAYQG 649
           SC     L  S N         K S  I+   G +    LEI   +    T  I +++  
Sbjct: 545 SCVTIQRLDLSGN---------KFSGYIAQELGQL--VYLEILRLSDNRLTGEIPHSFGD 593

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDL 708
             L+ L  L L  N L  +IP ++G LT +Q +LN+SHNNL+GTIP +  NL+ +E L L
Sbjct: 594 --LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYL 651

Query: 709 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768
           + NKLSG+IP  + +L +L I  ++ NNL G +P+ TA F   + S++ GN  LC     
Sbjct: 652 NDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRS 710

Query: 769 ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYW--RRRWLY 826
            C+ L   S++       + LI+        TI+  IVI  + ++ ++   W  +RR   
Sbjct: 711 HCQPLVPHSDSKL-----NWLINGSQRQKILTIT-CIVIGSVFLITFLGLCWTIKRREPA 764

Query: 827 LVEMW------ITSCYYF 838
            V +       +   YYF
Sbjct: 765 FVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 227/755 (30%), Positives = 357/755 (47%), Gaps = 100/755 (13%)

Query: 120 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
           L TNSS      L  L +L+ L + N +L G +P  L N + L ++++ FN+  G I +S
Sbjct: 100 LKTNSS------LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 180 PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
            + +L  +  L L+NN     IP SL  L     L++F   +N + G+I +S  +    Q
Sbjct: 154 -IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF---SNRLVGKIPDS--IGDLKQ 207

Query: 238 LKSLSLSSN--YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 295
           L++LSL+SN   G+    P  L +   L    L+H +++GE P   + N  +L  +   N
Sbjct: 208 LRNLSLASNNLIGE---IPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFEN 263

Query: 296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 355
           +SL+G   +   +  +L    +S+NNF    P ++  I  +L YF++S N+  G  P S 
Sbjct: 264 NSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMS-IFHNLEYFDVSYNSFSGPFPKSL 322

Query: 356 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415
             +  L+ + L  N+ TG I          L+ L L  N L G I   I  L NL  L +
Sbjct: 323 LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL----------------- 458
             N+F G IP ++SK  +L  L L+ NNL G++P  L  L  +                 
Sbjct: 383 SHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEE 442

Query: 459 ---QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSKN 513
              + + +  N  +GPIP   C+L SL  LD+S+N  SGS+PSC   +  SIK+++L  N
Sbjct: 443 ALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDN 502

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD------------------------WID 549
              G L +  F   + LV+LD+S+N L G  P                         W++
Sbjct: 503 NFSGTLPD-IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLE 561

Query: 550 GLSQLSHLNLAHNNLEGEVPIQLCRL--NQLQLLDLSDNNLHGLIPSCF-----DNTTLH 602
            L  L  LNL  N   G +  +   +    L+++D+S NN  G +P  +     D TTL 
Sbjct: 562 SLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLT 621

Query: 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662
           E  +   +    +  S+                 E   K +  +++ R+      +D S 
Sbjct: 622 EEMDQYMTEFWRYADSY-------------YHEMEMVNKGVDMSFE-RIRRDFRAIDFSG 667

Query: 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 722
           NK+ G+IP  +G L  ++ LNLS N  T  IP   +NL  +E+LD+S NKLSG+IP+ L 
Sbjct: 668 NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 723 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAST- 781
            L+ L+    ++N L G +P  T QF     SS+  NP L GL   ICR    ++  S  
Sbjct: 728 ALSFLSYMNFSHNLLQGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQL 785

Query: 782 ---SNEGDDNLIDMDSFFITFTISYVI-VIFGIVV 812
               +E ++N+ +    ++   I+Y   V+ G+V+
Sbjct: 786 PEDLSEAEENMFN----WVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 271/557 (48%), Gaps = 24/557 (4%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
           L N T L+ L L  ++  G         K L+ LD+S+N   G IP EIGD   SL    
Sbjct: 224 LINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLR 283

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           +S N   G IP S  +  +LQ LDLSNN ++G  P+ +     +L+ L LSNN + G   
Sbjct: 284 LSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFP 343

Query: 402 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
           + I + ++LR      N F G IP  L    +SL+ L L +N ++G+IP  +     L+ 
Sbjct: 344 TSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRT 403

Query: 461 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQL 519
           I +  N+L G IP E   L  L+      NNI+G +P     L  +K + L+ N L G++
Sbjct: 404 IDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEI 463

Query: 520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 579
               FFNCS++  +  + N L G +P     LS+L+ L L +NN  GE+P +L +   L 
Sbjct: 464 PP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLV 522

Query: 580 LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQGSVE------K 630
            LDL+ N+L G IP         ++ +   S +          S  G  G VE      +
Sbjct: 523 WLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPE 582

Query: 631 KILEIFEFTTKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNL 684
           ++L+I    + +    Y G +LSL         LDLS N+L G IP +IG +  +Q L L
Sbjct: 583 RLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLEL 642

Query: 685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 744
           SHN L+G IP T   L+++   D S N+L G+IP    +L+ L    ++ N L+G IP+ 
Sbjct: 643 SHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ- 701

Query: 745 TAQFATFNKSSYDGNPFLCGLPLPICRS-----LATMSEASTSNEGDDNLIDMDSFFITF 799
             Q +T   + Y  NP LCG+PLP C++      A   E   +  G       +S  +  
Sbjct: 702 RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGV 761

Query: 800 TISYVIVIFGIVVVLYV 816
            IS   V   IV  + V
Sbjct: 762 LISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  233 bits (595), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 214/671 (31%), Positives = 314/671 (46%), Gaps = 102/671 (15%)

Query: 132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
           L  L HLQ      N L GS+P  +    +L  LD+S NQLTG I      +L +++ L 
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
           L+ N     +  E + N S L   +  +N++ G+I     L    QL++L +  N   S 
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKI--PAELGNLVQLQALRIYKNKLTS- 302

Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGPFRLPIHSH 309
           + P  L+   +L    LS   ++G     +  LE+   LE L L +++  G F   I + 
Sbjct: 303 SIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNL 359

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
           + L  L V  NN  G +P ++G +L +L   +   N L G IPSS  N   L+ LDLS+N
Sbjct: 360 RNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHN 418

Query: 370 KLTGEIPDHLAMC----------------------CVNLEFLSLSNNSLKGHIFSRIFSL 407
           ++TGEIP                            C NLE LS+++N+L G +   I  L
Sbjct: 419 QMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL 478

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467
           + LR L +  N   G IP+ +     L  LYL++N  +G+IPR + NL  LQ + M  N 
Sbjct: 479 QKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSND 538

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFN 526
           LEGPIP E   +  L +LD+S+N  SG +P+ F  L S+  + L  N  +G +   +  +
Sbjct: 539 LEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-ASLKS 597

Query: 527 CSSLVTLDLSYNYLNGSIP-DWIDGLSQLS-HLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
            S L T D+S N L G+IP + +  L  +  +LN ++N L G +P +L +L  +Q +DLS
Sbjct: 598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 585 DNNLHGLIP----SCFDNTTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEF 638
           +N   G IP    +C +  TL  S NN S   PD+ F                       
Sbjct: 658 NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF----------------------- 694

Query: 639 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 698
                    QG  + ++  L+LS N   G IP   GN+T + +L+LS NNLTG IP + +
Sbjct: 695 ---------QG--MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLA 743

Query: 699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 758
           NL  ++ L L                        A NNL G +PE +  F   N S   G
Sbjct: 744 NLSTLKHLKL------------------------ASNNLKGHVPE-SGVFKNINASDLMG 778

Query: 759 NPFLCGLPLPI 769
           N  LCG   P+
Sbjct: 779 NTDLCGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 206/683 (30%), Positives = 319/683 (46%), Gaps = 82/683 (12%)

Query: 136 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 122 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 181

Query: 194 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 182 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 235

Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 311
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 236 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 292

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 356
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 293 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 352

Query: 357 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 406
                      +  L+ LDLS N+ +GE+P+ L     +L  L LS+N+  G I   +  
Sbjct: 353 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 412

Query: 407 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 413 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 472

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 473 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 509

Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P +L     L  LDL+
Sbjct: 510 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query: 585 DNNLHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 634
            N  +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 569 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 628

Query: 635 IFEFTTKNI-AYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687
           +      NI +  Y G              LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 629 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 688

Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 689 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQ 747

Query: 748 FATFNKSSYDGNPFLCGLPLPIC 770
           F TF  + +  NP LCG PLP C
Sbjct: 748 FETFPPAKFLNNPGLCGYPLPRC 770

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  226 bits (575), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 213/755 (28%), Positives = 342/755 (45%), Gaps = 80/755 (10%)

Query: 149 RGSLPW-CLANTTSLRI--LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 205
           RGS  W  ++ +   RI  LD+  + LTG+++   L  L +++ L L  N+F        
Sbjct: 63  RGSCSWRGVSCSDDGRIVGLDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFSSGGDSSG 122

Query: 206 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN--YG---------DSVTFP 254
              +  L++ D  +N I+      +  +    L S+++S+N   G          S+T  
Sbjct: 123 SDCY--LQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTV 180

Query: 255 KFLYH--------------QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
              Y+                 LK  +L+H  + G+F +        L F  L  ++L+G
Sbjct: 181 DLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSG 240

Query: 301 ---PFRLP------------------------IHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
              P  LP                          S + L+ L +++N   G IP E+  +
Sbjct: 241 DKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLL 300

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
             +LV  ++S N   G +PS F   ++LQ L+L NN L+G+  + +      + +L ++ 
Sbjct: 301 CKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAY 360

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPR 450
           N++ G +   + +  NLR L L  N F G +P    SL     L+ + + NN LSG +P 
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPM 420

Query: 451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQV 508
            LG  K L+ I +  N L GPIP E   L +L  L +  NN++G++P   C    +++ +
Sbjct: 421 ELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETL 480

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
            L+ N+L G + E +   C++++ + LS N L G IP  I  LS+L+ L L +N+L G V
Sbjct: 481 ILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQ 625
           P QL     L  LDL+ NNL G +P    +        + S     F   +      G  
Sbjct: 540 PRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 626 GSVEKKILEIFEFTTKNIAYA------YQGRVLSLLAG------LDLSCNKLVGHIPPQI 673
           G VE + +         + ++      Y G  +   +        D+S N + G IPP  
Sbjct: 600 GLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGY 659

Query: 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733
           GN+  +Q LNL HN +TGTIP +F  L+ I  LDLS+N L G +P  L  L+ L+   V+
Sbjct: 660 GNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVS 719

Query: 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMD 793
            NNL+G IP +  Q  TF  S Y  N  LCG+PL  C S       S  +     +    
Sbjct: 720 NNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQTVATAV 778

Query: 794 SFFITFT-ISYVIVIFGIVVVLYVNPYWRRRWLYL 827
              I F+ + +V+++  +  V  V    ++R  Y+
Sbjct: 779 IAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  223 bits (569), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 216/732 (29%), Positives = 346/732 (47%), Gaps = 61/732 (8%)

Query: 124 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 183
           S RI D+ +  L  L++L + +N   G++P  LA  T L  + + +N L+G +  + + +
Sbjct: 81  SGRISDR-ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPA-MRN 138

Query: 184 LTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
           LTS+E   ++ N     IPV L      S L+  D  +N  +G+I    +   + QL +L
Sbjct: 139 LTSLEVFNVAGNRLSGEIPVGLP-----SSLQFLDISSNTFSGQIPSGLANLTQLQLLNL 193

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
           S +   G+    P  L +   L+   L    + G  P+  + N + L  L    + + G 
Sbjct: 194 SYNQLTGE---IPASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGV 249

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNV-I 359
                 +  +L  L +SNNNF G +P  +     SL    +  NA    + P +  N   
Sbjct: 250 IPAAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAFSDIVRPETTANCRT 308

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419
            LQ LDL  N+++G  P  L    ++L+ L +S N   G I   I +L+ L  L L  N 
Sbjct: 309 GLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNS 367

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 479
             GEIP  + +C SL  L    N+L G+IP +LG +K L+ + + +N   G +P     L
Sbjct: 368 LTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL 427

Query: 480 DSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
             L+ L++ +NN++GS P     L S+ ++ LS N   G +   +  N S+L  L+LS N
Sbjct: 428 QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLSGN 486

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
             +G IP  +  L +L+ L+L+  N+ GEVP++L  L  +Q++ L  NN  G++P  F +
Sbjct: 487 GFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-S 545

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV--LSLLA 656
           + +   Y N SS       SFS   PQ     ++L     +  +I+ +    +   S L 
Sbjct: 546 SLVSLRYVNLSS------NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALE 599

Query: 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLS------------------------HNNLTGT 692
            L+L  N+L+GHIP  +  L R++ L+L                         HN+L+G 
Sbjct: 600 VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGV 659

Query: 693 IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT-LAIFIVAYNNLSGKIPEWTAQFATF 751
           IP +FS L ++  +DLS N L+G+IP  L  +++ L  F V+ NNL G+IP         
Sbjct: 660 IPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN- 718

Query: 752 NKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIV 811
           N S + GN  LCG P      L    E+ST+ EG      M    +   I   ++     
Sbjct: 719 NTSEFSGNTELCGKP------LNRRCESSTA-EGKKKKRKMILMIVMAAIGAFLLSLFCC 771

Query: 812 VVLYVNPYWRRR 823
             +Y    WR++
Sbjct: 772 FYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	850
255581263	912	serine-threonine protein kinase, plant-t	0.871	0.812	0.509	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.887	0.965	0.469	1e-180
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.971	0.564	0.441	1e-170
224073436	1014	predicted protein [Populus trichocarpa]	0.972	0.815	0.436	1e-170
224134891	953	predicted protein [Populus trichocarpa]	0.916	0.817	0.444	1e-170
224123984	1016	predicted protein [Populus trichocarpa]	0.936	0.783	0.447	1e-169
224073382	1309	predicted protein [Populus trichocarpa]	0.829	0.538	0.468	1e-166
224073422	969	predicted protein [Populus trichocarpa]	0.927	0.813	0.443	1e-166
224098008	1097	predicted protein [Populus trichocarpa]	0.882	0.683	0.444	1e-164
224073452	710	predicted protein [Populus trichocarpa]	0.787	0.942	0.471	1e-164

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/766 (50%), Positives = 514/766 (67%), Gaps = 25/766 (3%)

Query: 72  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 131
           +  Q  P+F++LE L +   +I L  SFLQ +G  M SLK LSLSG  L      +  QG
Sbjct: 168 IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
           LC L HL+ L + +N+  G LPWCL+N TSL++LD+S NQ  G IS+SPL  L S+ +L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
           +SNNHF++P SL P FNHS LK    +NN I  E  E HS  P+FQL S+ + S YG   
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEA-ELHS-APRFQLISI-IFSGYGICG 339

Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 311
           TFP FLYHQ+ L+  +LSH+ + GEFPNWLL NNT+LE L LVN+SL+G  +LP+H H  
Sbjct: 340 TFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVN 399

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
           L  LD+SNN+   HIP+EIG  LP L   N+S N  DGSIPSSFGN+  L+ LDLSNN+L
Sbjct: 400 LLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQL 459

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 431
           +G IP+HLA  C +L  L LSNNSL+G +FS+ F+L NL WL L+ NHF G IP+SLSK 
Sbjct: 460 SGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK- 518

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 491
           S+L  + L++N+LSG IP W+GNL  LQ++++  N L+GPIPVEFC+L  L++LD+++N+
Sbjct: 519 SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 492 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 551
           +SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS N + G IP  I G+
Sbjct: 579 VSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGI 637

Query: 552 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 611
           + L  LNL  N  +GE+P Q+C L QL L+ L+DNNL G IPSC     L    +++ +P
Sbjct: 638 NALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLAP 692

Query: 612 DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 671
           D P   +        +     +    FTTK  +Y+YQG++LS ++G+D SCNKL G IPP
Sbjct: 693 DVPPVPNPL------NPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 672 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 731
           ++GN + I +LNLS+N  TG IP TFSNL+ IESLDLSYN L+G IP QL++L  L+ F 
Sbjct: 747 EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 732 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC---RSLATMSEASTSNEGDDN 788
           VA+NNL GK P+ T QFATF  SSY+GNP LCGLPLP     R  ++   AS  +E + N
Sbjct: 807 VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESN 865

Query: 789 LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 834
            +DM++F+ +F +SY  VI G+ +VLY+NP WRR W   V++ I+S
Sbjct: 866 FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 380/810 (46%), Positives = 512/810 (63%), Gaps = 56/810 (6%)

Query: 58  LKNLSMSGCEVNGVLSGQGFPH---FKSLEHLDMRFARIALNT-SFLQIIGESMPSLKYL 113
           L  L + G E+    +  GF        LE L++ F +I  +T SFL    E + SLK+L
Sbjct: 2   LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL----EGLSSLKHL 57

Query: 114 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 173
           +L  + L      I  +GLC L  LQEL I  NDL G LP CL N  +L++LD+SFN  +
Sbjct: 58  NLDNNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFS 113

Query: 174 GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 233
           G+IS S +  LTSI +L+LS+NHF+IP+SL P FN S LK  +  +NEI       H+L 
Sbjct: 114 GNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI 173

Query: 234 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 293
           P+FQL+ LSL+  +G   TFPKFLY+QH+L+  +LSHIK+IGEFP+WLL+NNTKLE LYL
Sbjct: 174 PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYL 232

Query: 294 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 353
           VN SL+G  +LP  SH  L  LD+S N+ Q  IP +IG   P L + N+S N   GSIPS
Sbjct: 233 VNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPS 292

Query: 354 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 413
           S  N+  L  LDLSNN L+G IP+ L   C++L  L LSNN LKG  F R F+L  L  L
Sbjct: 293 SISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDL 352

Query: 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 473
           +L GN   G +P SLS  S L+ L ++ NNLSGKIPRW+G +  LQ++ + +N+L G +P
Sbjct: 353 ILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLP 412

Query: 474 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 533
             FC                          ++ +V+LSKN L G L  G    C SL  L
Sbjct: 413 SSFCS-----------------------SRTMTEVYLSKNKLEGSLI-GALDGCLSLNRL 448

Query: 534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 593
           DLS+NY  G IP+ I  L +LS L L +NNLEG++P QLC+L +L L+DLS N+L G I 
Sbjct: 449 DLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHIL 508

Query: 594 SCFD---------NTTLHESYNNNSSPDKPFKTSFSISGPQG-SVEKKILEIFEFTTKNI 643
            C            T+L+ S N+    ++  +  F +   +  S+ K +    EFTTK+I
Sbjct: 509 PCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSV----EFTTKSI 564

Query: 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
           +Y+++G +L  ++G+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNL+ I
Sbjct: 565 SYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEI 624

Query: 704 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 763
           ESLDLSYN L+G+IPRQL+DLN L+ F VA+NNLSGK PE  AQF+TFNKS Y+GNP LC
Sbjct: 625 ESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLC 684

Query: 764 GLPLP--ICRSL--ATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPY 819
           G PL     R+L  + +  + T  + ++ +IDM++F +TF+++Y++V+  I  VLY+NP 
Sbjct: 685 GPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPR 744

Query: 820 WRRRWLYLVEMWITSCYYFVIDNL-IPTRF 848
           WRR W Y +   I +CYYF++DNL +P RF
Sbjct: 745 WRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 378/857 (44%), Positives = 528/857 (61%), Gaps = 31/857 (3%)

Query: 1    MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
            + +  +L  L L  N+  + +TTT  L +   L  L L+ +  +IS L+S+G +   LK 
Sbjct: 614  LAALHNLEELDLSKNDLESFITTTG-LKSLRKLRVLHLETNDFNISTLKSLGRL-SLLKE 671

Query: 61   LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
            L + G ++ G ++ +   + ++LE LD+    I+  +S LQI+ E M SLK LSL  +  
Sbjct: 672  LYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EVMTSLKALSLRSN-- 726

Query: 121  GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
            G N S+   QGLC L +LQEL + +N   GS+  CL N TSLR LD+S N+ +G++ SS 
Sbjct: 727  GINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSL 786

Query: 181  LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AKNNEINGEINESHSLTPKFQL 238
               L  +E L LS+N F+    +     HSKL++ D    NN +  E +E  +  P FQL
Sbjct: 787  FAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLE-SEDQTWVPSFQL 845

Query: 239  KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
            K   LSS    + + P FL++QH+L+  +LS+  +  +FP WL++NNT+LE L L N+SL
Sbjct: 846  KVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSL 905

Query: 299  AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 358
             G F LP   +     +D+SNN  QG +P  I   LP+L++ N+S N+ +GSIPS FG +
Sbjct: 906  TGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGM 964

Query: 359  IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
              L FLDLSNN  TG IP+ LAM C +LE+L LS N L G +F R+ +L +LR L L+ N
Sbjct: 965  RKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDN 1024

Query: 419  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
            HF G+IP  LS  S L+ LY+++N++SGK+P W+GN+  L  +VMP N LEGPIPVEFC 
Sbjct: 1025 HFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCS 1083

Query: 479  LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
            LD+L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F     L TLD+  N
Sbjct: 1084 LDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNN 1142

Query: 539  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
             L+G IPDWI   S LS L L  N+ +G++P QLC+L+++ +LDLS N+L G IPSC + 
Sbjct: 1143 NLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNK 1202

Query: 599  TTLHESYNNNSS------PDKPFKT----SFSISGPQGSVEKKILE----IFEFTTKNIA 644
                  + +         P   F +    S  I   Q +V    +     + EFTTKN  
Sbjct: 1203 IQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRT 1262

Query: 645  YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
              Y+G  L  + G+DLS NKL G IPP+IGNL+++  LNLSHN LTG IP  FS L+ IE
Sbjct: 1263 DFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIE 1322

Query: 705  SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG 764
            SLDLSYN L+G IP +L +L  LA+F VAYNNLSGKIPE TAQF TF ++SY GNP+LCG
Sbjct: 1323 SLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCG 1382

Query: 765  -LPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRR 823
             L    C      +E     +G   L D D F+++F  SYV+V+ G+  VLY+N  WR++
Sbjct: 1383 SLLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKK 1439

Query: 824  WLYLVEMWITSCYYFVI 840
            W +++++ IT C  FV+
Sbjct: 1440 WFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 381/872 (43%), Positives = 524/872 (60%), Gaps = 45/872 (5%)

Query: 1    MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
            M    +L +L L  N  T +       H    L+ L L  +  + S+L  +  +   LK+
Sbjct: 145  MTGLSTLKSLDLSGNGLTGSGFEIISSH-LEKLDNLDLSYNIFNDSILSHLRGL-SYLKS 202

Query: 61   LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
            L++SG  + G  +  G   F S    ++   R +L  +FLQ IG ++P LK LS++   L
Sbjct: 203  LNLSGNMLLGSTTVNG-TFFNSSTLEELYLDRTSLPINFLQNIG-ALPDLKVLSVAECDL 260

Query: 121  -GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
             GT    +  QG C L +L++L +  N+L GSLP CL N +SL++LDVS NQ TG+I+S 
Sbjct: 261  HGT----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASG 316

Query: 180  PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
            PL +LTS+E L LSNN F +P+S++P  NHS LK F ++NN++  E     +L PKFQL 
Sbjct: 317  PLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLV 376

Query: 240  SLSLS-SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
               LS +    +V  P FLY+Q++++  +LSH  +   FP+WLL+NNT+LE LYL N+S 
Sbjct: 377  FFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSF 436

Query: 299  AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 358
             G  +L  H +  +  LD+SNNN  G IP +I  I P++    ++ N   G IPS  GN+
Sbjct: 437  VGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNI 496

Query: 359  IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
              L+ LDLSNN+L+    + L      + FL LSNN+L G + + +F+   L +L L GN
Sbjct: 497  SSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGN 552

Query: 419  HFVGEIPQSLSKCSSL-KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC 477
            +F G+I   L     +   L L++N  SG +PRWL N  GL  I + KN+ +GPI  +FC
Sbjct: 553  NFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFC 612

Query: 478  RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
            +L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SSLVT+DL  
Sbjct: 613  KLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRD 671

Query: 538  NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597
            N   GS P+WI  LS LS L L  N+ +GE+P+QLC L QL +LD+S N L G +PSC  
Sbjct: 672  NNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLG 731

Query: 598  NTTLHESYNNNSS-------PDKPFKTSFSISGP----------QGSVEKKILEIFEFTT 640
            N T  ES     +            K  +   GP          +G +     E+ EFTT
Sbjct: 732  NLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTT 791

Query: 641  KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 700
            KN+ Y Y+G+ LS ++G+DLS N  VG IPP+ G+L++I +LNLSHNNLTG+IP TFSNL
Sbjct: 792  KNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNL 851

Query: 701  RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP 760
            + IESLDLSYN L+G IP QL D+ TL +F VA+NNLSG  PE   QF TF++S Y+GNP
Sbjct: 852  KQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNP 911

Query: 761  FLCGLPLP-ICRSLATMSEASTSN-----------EGDDNLIDMDSFFITFTISYVIVIF 808
            FLCG PL   C   A  S+   S            +GDD  IDM+ F+I F + Y +V+ 
Sbjct: 912  FLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVM 971

Query: 809  GIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 840
             IVVVLY++PYWRRRW Y +E  I +CYYFV+
Sbjct: 972  IIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/819 (44%), Positives = 492/819 (60%), Gaps = 40/819 (4%)

Query: 46  SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFARIALNTSFLQIIG 104
           S+L        +LK+L +S    NG+ +G G F +  +LE L +    + +N  FLQ IG
Sbjct: 140 SILSCFNGNLSTLKSLDLSA---NGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG 194

Query: 105 ESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 163
            ++P+LK LS++   L GT    +  QG C L +L++L +  N+  GSLP CL N +SL+
Sbjct: 195 -ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQ 249

Query: 164 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223
           +LDVS NQ TG+ +S PL +L S+E L LSNN F +P+S++P  NHS LK F ++NN + 
Sbjct: 250 LLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLV 309

Query: 224 GEINESHSLTPKFQLKSLSLSSNYGDSV--TFPKFLYHQHELKEAELSHIKMIGEFPNWL 281
            E     +L PKFQL    LSS+         P FLY+Q +L+  +LSH  + G FP+WL
Sbjct: 310 TEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWL 369

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
           L+NNT+LE LYL  +   G  +L  H +  +  LD+SNNN  G I  +I  I P+L    
Sbjct: 370 LKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLR 429

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           ++ N   G IPS  GN+  L FLDLSNN+L+    + L      +  L LSNNSL G I 
Sbjct: 430 MAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSLGGQIP 484

Query: 402 SRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
           + +F+    ++L L GN+F G+I    L     L  L L+NN  SG +PR   N   L+ 
Sbjct: 485 TSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRV 544

Query: 461 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 520
           + + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L 
Sbjct: 545 LDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLT 604

Query: 521 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 580
            G FFN S LVT+DL  N L GSIP+WI   S LS L L  N+ +GE+P+QLC L QL +
Sbjct: 605 YG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSI 663

Query: 581 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSP-------DKPFKTSFSISGPQGSVEKKIL 633
           LD+S N L G +PSC  N T  ES              +   K  +   GP       +L
Sbjct: 664 LDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLL 723

Query: 634 ----------EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 683
                     E+ EF TKN+ Y Y+G +LS ++G+DLS N   G IP + GNL+ I++LN
Sbjct: 724 GKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLN 783

Query: 684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
           LSHNN T +IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +F VA+NNLSG  PE
Sbjct: 784 LSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPE 843

Query: 744 WTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTI 801
              QF TF++S Y+GNPFLCG PL    S+  +S     +  +GD   IDM+ F+I+F +
Sbjct: 844 RKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGV 903

Query: 802 SYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 840
            Y +V+  I  VLY+NPYWRRRWLY +E  I +CYYF++
Sbjct: 904 CYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 370/826 (44%), Positives = 501/826 (60%), Gaps = 30/826 (3%)

Query: 33   LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFA 91
            LE L L  +  + S+  S+   F SLK+L +S   + G  S  G F +  +LE L +  +
Sbjct: 192  LENLHLRGNQYNDSIFSSLTG-FSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGS 250

Query: 92   RIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 151
             + LN  FL  IG  +P+LK LS     L   +  +  QGLC L +L++L++  N+L GS
Sbjct: 251  SLPLN--FLHNIG-VLPALKVLSAGECDL---NGTLPAQGLCGLKNLEQLFLSENNLEGS 304

Query: 152  LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 211
            LP C  N +SL++LDVS NQ  G+I+SSPL +L S+E + LSNNHF++P+S++P  NHS 
Sbjct: 305  LPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSS 364

Query: 212  LKIFDAKNNEINGEINESHSLTPKFQLK--SLSLSSNYGDSVTFPKFLYHQHELKEAELS 269
            L+ F + NN +  E    H L PKFQL   SLS SS+   +V  P FLY+QH+L+  +LS
Sbjct: 365  LRFFSSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLS 424

Query: 270  HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 329
                IG FP+WLL+NNT+LE L+L  +S  G  +L  H +  +  +D+SNNN  G IP  
Sbjct: 425  QNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKN 484

Query: 330  IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
            I  I  +L    ++ N L G IPS  GN   L  LDLSNN+L+    +      + L FL
Sbjct: 485  ICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFL 540

Query: 390  SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKI 448
             LSNN+L G + + + +   L +L L  N+F G+I    S   ++   L L+NN  SG +
Sbjct: 541  KLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGML 600

Query: 449  PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 508
            PRW  NL  +  I + KNH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF P  I  V
Sbjct: 601  PRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHV 660

Query: 509  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
            HLSKN L G L  G F+N SSLVTLDL  N   GSI +WI  LS LS L L  NN +GE 
Sbjct: 661  HLSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEF 719

Query: 569  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN---------NSSP-DKPFKTS 618
             +QLC L QL +LD+S N L G +PSC  N +  ESY            S+P +K +   
Sbjct: 720  LVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEF 779

Query: 619  FSISGPQGSVEKKIL--EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 676
                   GS    I   E+ EFT K++ Y Y+G++LS ++G+DLS NK  G IPP++GNL
Sbjct: 780  NQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNL 839

Query: 677  TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
            + +  LNLSHNNLTG+IP TFSNL+ IES DLSYN L G IP +L ++ TL +F VA+NN
Sbjct: 840  SELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNN 899

Query: 737  LSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMS-EASTSNEGDDNLIDMDS 794
            LSG+ PE   QF TF++SSY+GNPFLCG PL   C    + S       + DD  IDM+ 
Sbjct: 900  LSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNF 959

Query: 795  FFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 840
            F+I+  + Y++V+ GI  VLY+NPYWR  W   ++  I +C+ F++
Sbjct: 960  FYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 345/737 (46%), Positives = 458/737 (62%), Gaps = 32/737 (4%)

Query: 131  GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 190
            G C + +L++L +  N+  GSLP CL N +SL++LD+S NQ TG+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 191  RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS-SNYGD 249
             LSNN F +P S++P  NHS LK F  +NN +  E      L PKFQL   SLS +    
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLSKTTEAL 686

Query: 250  SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 309
            +V  P FLY+Q+ L+  +LSH  + G FP+WLL+NNT+LE LYL  +S+ G  +L  H +
Sbjct: 687  NVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPY 746

Query: 310  KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
             ++  LD+SNNN  G IP +I  I P+L    ++ N   G IPS  GN+  L  LDLSNN
Sbjct: 747  PKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNN 806

Query: 370  KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS-L 428
            +L+    + L      + FL LSNN+L G I + +F+     +L L  N+F G+I  S L
Sbjct: 807  QLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPL 862

Query: 429  SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDI 487
            +   +   L L+NN  SG +PRW  N   L  I + KNH EGPI   F C+LD L+ LD+
Sbjct: 863  NGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDL 922

Query: 488  SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
            S+NN+ G +PSCF    I  VHLSKN L G LK   F+N SSLVT+DL  N   GSIP+W
Sbjct: 923  SENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPNW 981

Query: 548  IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
            +  LS LS L L  N+L+GE+P+QLC L QL +LD+S N L G +PSC +N T  ES   
Sbjct: 982  VGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQK 1041

Query: 608  NSS-------PDKPFKTSFSISGP----------QGSVEKKILEIFEFTTKNIAYAYQGR 650
                      P    K    I GP          +G       E+ EFTTKN+ Y Y+G+
Sbjct: 1042 ALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGK 1101

Query: 651  VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 710
            +LS ++G+DLS N  VG IPP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLDLSY
Sbjct: 1102 ILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSY 1161

Query: 711  NKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL--- 767
            N  +G IP QL ++ TL +F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL   
Sbjct: 1162 NNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNN 1221

Query: 768  ---PICRSLATMSEASTSNEG-DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRR 823
                +  S   +S+   ++E  DD  IDM+ F+I+F++ Y +V+  I  VLY+NPYWRRR
Sbjct: 1222 CSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRR 1281

Query: 824  WLYLVEMWITSCYYFVI 840
            WLY +E  I +CYYFV+
Sbjct: 1282 WLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 372/838 (44%), Positives = 500/838 (59%), Gaps = 50/838 (5%)

Query: 27  LHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 84
           L  F++L+ L L  + L  S L+ +  +    SLK LS+        LS   F +  +LE
Sbjct: 147 LTGFSSLKSLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTN----LSQGTFFNSSTLE 202

Query: 85  HLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYI 143
            L +    + +N  FLQ    ++P+LK LS+    L GT    +  QG C L +L++L +
Sbjct: 203 ELHLDNTSLPIN--FLQNT-RALPALKVLSVGECDLHGT----LPAQGWCELKNLKQLDL 255

Query: 144 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 203
             N+  G+LP CL N +SL +LDVS NQ TG+I S PL +L S+E L LSNN F +P S+
Sbjct: 256 ARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSM 315

Query: 204 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL-SSNYGDSVTFPKFLYHQHE 262
           +P  NHS LK F ++NN +  E     +L PKFQL  LSL  +    +V  P FLY+Q++
Sbjct: 316 KPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYD 375

Query: 263 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 322
           L+  +LSH  + G FP+WLL+NNT++E L L ++S  G  +LP H +  +  LD+SNNN 
Sbjct: 376 LRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNM 435

Query: 323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 382
              IP +I  ILP+L    +  N   G IPS  GN+  L  LDLSNN+L+    + L   
Sbjct: 436 NSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT-- 493

Query: 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNN 441
              L FL LSNN+L G I   +F+   L +L L GN+F G+I   SL +      L L+N
Sbjct: 494 --TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSN 551

Query: 442 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSCF 500
           N  SG +PRW  N   L+ I + KNH +GPIP +F C+ D L+ LD+S+NN+SG +PSCF
Sbjct: 552 NQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCF 611

Query: 501 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
            P  I  +HLSKN L G L  G F+N SSLVT+DL  N    SIP+WI  LS LS L L 
Sbjct: 612 SPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLR 670

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF----- 615
            N+ +           QL +LD+S N L G +PSC  N T  ES          F     
Sbjct: 671 ANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRS 720

Query: 616 --KTSFSISGP---------QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664
             KT +   GP         +G     I E+ EFTTK ++Y Y+G+VL+ ++G+DLS N 
Sbjct: 721 IEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNN 780

Query: 665 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 724
            VG IPP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLDLSYN L+G IP QL ++
Sbjct: 781 FVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEI 840

Query: 725 NTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSN 783
            TL +F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL   C   A  S+   ++
Sbjct: 841 TTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPND 900

Query: 784 E-GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 840
           E GDD  +DM+ F+I+F + Y +V+  I  VLY+NPYWRRRWL+ +E  I +CYYF +
Sbjct: 901 EQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/805 (44%), Positives = 483/805 (60%), Gaps = 55/805 (6%)

Query: 44   HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 103
            ++ +LQS+ S +PSLK LS+        LS   F +  +LE L +    + +N  FLQ  
Sbjct: 329  NLDILQSLRS-WPSLKTLSLKDTN----LSQGTFFNSSTLEELHLDNTSLPIN--FLQNT 381

Query: 104  GESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 162
            G ++P+LK LS++   L GT    +  QG C L +L++L +  N+  G+LP CL N +SL
Sbjct: 382  G-ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSL 436

Query: 163  RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 222
            ++LDVS NQ TG+I+  PL  L S+E L LSNN F +P+S++P  NHS LK F ++NN +
Sbjct: 437  QLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRL 496

Query: 223  NGEINESHSLTPKFQLKSLSLSSN---YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 279
              E     +L PKFQL    LSS+      +V    FLY+Q++L+  +LSH  + G FP+
Sbjct: 497  VTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPS 556

Query: 280  WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 339
            WLL+NNT++E LYL  +S  G  +L  H +  +  LD+SNNN  G IP +I  I P+L  
Sbjct: 557  WLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLWI 616

Query: 340  FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 399
              ++ N   G IPS  GN   L FLDLSNN+L+    + L      ++ L LSNNSL G 
Sbjct: 617  LRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGGQ 672

Query: 400  IFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 458
            I + +F+    ++L L GN+F G+I    L        L L+NN  SG +PR   N    
Sbjct: 673  IPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYD 732

Query: 459  QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 518
            + + + KN  +GPIP +FC+LD L+ LD+SDN +SG +PSCF P  I  +HLSKN L G 
Sbjct: 733  EVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGP 792

Query: 519  LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 578
            L  G F+N SSLVT+DL  N   GSIP+WI  LS LS L L  NN +GE+ +QLC L QL
Sbjct: 793  LTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQL 851

Query: 579  QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 638
             +LD+S N L G +PSC  N TL E   N                 +GS           
Sbjct: 852  SILDVSQNQLSGPLPSCLGNLTLKEIPEN----------------ARGS----------- 884

Query: 639  TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 698
                I ++  G+VLS + G+DLS N  VG IPP+ GNL++I +LNLSHNNLTG+IP TFS
Sbjct: 885  ---RIWFSVMGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFS 941

Query: 699  NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF-NKSSYD 757
            NL+ IESLDLSYN L+G IP QL ++ TL +F VAYNNLSG+ PE   QF TF +++ Y+
Sbjct: 942  NLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYE 1001

Query: 758  GNPFLCGLPLP--ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLY 815
            GNPFLCG PL          +       +GDD  IDM+ F+I+F + Y +V+  I  VLY
Sbjct: 1002 GNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLY 1061

Query: 816  VNPYWRRRWLYLVEMWITSCYYFVI 840
            +NPYWRRRW Y +E  I +CYYFV+
Sbjct: 1062 INPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 335/710 (47%), Positives = 439/710 (61%), Gaps = 41/710 (5%)

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219
           +SL++LDVS NQ TG+I+  PL +L S+E L LSNN F +P+S++P  NHS LK F ++N
Sbjct: 2   SSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSEN 61

Query: 220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSV--TFPKFLYHQHELKEAELSHIKMIGEF 277
           N++  E     +L PKFQL    LSS+         P FLY+Q +L+  +LSH  + G F
Sbjct: 62  NKLVTEPAAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMF 121

Query: 278 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 337
           P+WLL+NNT+LE LYL ++S  G  +L  H H  +  LD+SNNN  G IP +I  I P+L
Sbjct: 122 PSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNL 181

Query: 338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 397
               ++ N   G IPS  GN+  L FLDLSNN+L+    + L    V    L LSNN+L 
Sbjct: 182 HTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNNLG 237

Query: 398 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 456
           G I + +F+   L +L L GN+F G+I    L + +    L L+NN  SG +PR   N  
Sbjct: 238 GKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNFS 297

Query: 457 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 516
            L  I +  NH +GPIP +FC+ D L+ LD+S+NN+SG +PSCF P  I  VHLSKN L 
Sbjct: 298 ILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLS 357

Query: 517 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 576
           G L    FFN S LVT+DL  N   GSIP+WI  LS LS L L  N+ +GE+PIQLC L 
Sbjct: 358 GPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLLE 416

Query: 577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 636
           QL +LD+S N L G +PSC  N T  +S       DK      +      S+EK   EI 
Sbjct: 417 QLSILDVSHNQLSGPLPSCLGNLTFKKS-------DKKAILEVAYGFISESIEKAYYEIM 469

Query: 637 ------------------------EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 672
                                   EFTTKN+ Y Y+G+VL+ + G+DLS N  +G IPP+
Sbjct: 470 GPPLVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPE 529

Query: 673 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 732
            GNL++I ++NLSHNNLTG+IP TFSNL HIESLDLSYN L+G IP Q  ++ TL +F V
Sbjct: 530 FGNLSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSV 589

Query: 733 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNE-GDDNLI 790
           A+NNLSGK PE   QF TF++S Y+GNPFLCG PLP  C   A +S+   ++E GDD  I
Sbjct: 590 AHNNLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFI 649

Query: 791 DMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 840
           DM+ F+I+F + Y +V+  I  VLY+NPYWRRRWLY +E  I +CYYFV+
Sbjct: 650 DMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	850
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.967	0.822	0.350	7.7e-119
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.814	0.638	0.362	5.8e-105
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.950	0.906	0.334	3.9e-99
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.945	0.823	0.333	4.1e-97
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.943	0.883	0.329	1.1e-94
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.931	0.847	0.324	3.6e-89
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.805	0.709	0.319	1.6e-79
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.923	0.626	0.283	7.1e-64
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.722	0.523	0.306	7.5e-61
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.769	0.806	0.293	1.9e-60

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 305/871 (35%), Positives = 454/871 (52%)

Query:     6 SLNTLHLESNNFTATLTTTQ--ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
             +L  L L  N F  ++ T     L  F  LE L L D+  +  +   + S   SLK+LS+
Sbjct:   122 NLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA-TSLKSLSL 180

Query:    64 SGCEVNGVLSGQGFPHFKSLEHLDM---RF-ARIALNTSFL--QIIGESMPXXXXXXXXX 117
              G  + G    +      ++E LD+   RF   I +   F   ++    +          
Sbjct:   181 WGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVE 240

Query:   118 XXXXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 177
                     + L  G CP  +++EL + NN L G  P CL + T LR+LD+S NQLTG++ 
Sbjct:   241 LQGKFAKTKPLS-GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVP 299

Query:   178 SSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEINESHSLTPK 235
             S+ L +L S+E L L  N+F    SL  L N SKLK+   D+++N +  E+    S  PK
Sbjct:   300 SA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSL--EVEFETSWKPK 356

Query:   236 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 295
             FQL  ++L S   + V  P FL HQ +L   +LS  ++ G FP+WLLENNTKLE L L N
Sbjct:   357 FQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQN 414

Query:   296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE-IGDILPSLVYFNISMNALDGSIPSS 354
             +S    F+LP  +H  L FL+VS N F  H+ ++  G ILP LV  N++ N   G++PSS
Sbjct:   415 NSFTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSS 471

Query:   355 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLL 414
               N+  ++FLDLS+N+  G++P      C              G +F    +   L W++
Sbjct:   472 LDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL-WVM 530

Query:   415 -LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 473
              ++ N F G I +      SL  L ++NN L+G IP W+G  +GL  + +  N LEG IP
Sbjct:   531 SMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIP 590

Query:   474 VEFCRLDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSL 530
                  +  LQ+LD+S N +SG +P   S  Y  ++  + L  N L G + +    N   +
Sbjct:   591 TSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAV--LLLQNNNLSGVIPDTLLLN---V 645

Query:   531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHG 590
             + LDL  N L+G++P++I+    +S L L  NN  G++P                   +G
Sbjct:   646 IVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNG 704

Query:   591 LIPSCFDNTTL-----HESYNNN------SSPDKPFKTSFSISGPQGSVEKKILEI-FEF 638
              IPSC  NT+       +SY  +      ++ D  +  S  +      V +   +   EF
Sbjct:   705 SIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEF 764

Query:   639 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 698
              TK+   AY G  L LL G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS
Sbjct:   765 ATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFS 824

Query:   699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 758
              L+++ESLDLS+N+L G IP QL D+ +LA+F V+YNNLSG +P+   QF TF   SY G
Sbjct:   825 GLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFG 883

Query:   759 NPFLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTISYVIVIFGIVVVLYV 816
             NP LCG  + I  S A+ +   T N  E D++ +DM+SF+ +F  +YV ++ GI+  L  
Sbjct:   884 NPLLCGKSIDI--SCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSF 941

Query:   817 NPYWRRRWLYLVEMWITSCYYFVIDNLIPTR 847
             +  W R W Y+V+ ++      +  N   T+
Sbjct:   942 DSPWSRAWFYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 264/728 (36%), Positives = 382/728 (52%)

Query:   131 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI-EE 189
             G+C L  L+EL + +N L  SLP+CL N T LR LD+S NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   190 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 249
             L L +N+F        L N ++L +F   +     ++    S  P FQLK L LS N   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLS-NCSL 469

Query:   250 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 309
               T   FL HQ +L   +LSH K+ G FP WL++NNT+L+ + L  +SL    +LPI  H
Sbjct:   470 GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVH 528

Query:   310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
               L+ LD+S+N     I  +IG + P+L + N S N   G+IPSS G +  LQ LD+S+N
Sbjct:   529 G-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query:   370 KLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 429
              L G++P      C             +G IFS+  +L  L  L L+GN+F G + + L 
Sbjct:   588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLL 647

Query:   430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDIS 488
             K  +L  L +++N  SG +P W+G +  L ++ M  N L+GP P  F R    ++++DIS
Sbjct:   648 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP--FLRQSPWVEVMDIS 705

Query:   489 DNNISGSLP-SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
              N+ SGS+P +  +P S++++ L  N   G L  G  F  + L  LDL  N  +G I + 
Sbjct:   706 HNSFSGSIPRNVNFP-SLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNT 763

Query:   548 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNN 607
             ID  S+L  L L +N+ +  +P                    G IPSCF   +     N+
Sbjct:   764 IDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQND 823

Query:   608 NSS--------------PDKPFKTSFSIS-GPQGSVEKKILEIFEFTTKNIAYAYQGRVL 652
              +               P   + +  ++  G +   + K   + +F TK+   AYQG +L
Sbjct:   824 RTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDIL 883

Query:   653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 712
               + GLDLS N+L G IP +IG+L  I++LNLS N LTG+IP + S L+ +ESLDLS NK
Sbjct:   884 RYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNK 943

Query:   713 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL-PICR 771
             L G IP  L DLN+L    ++YNNLSG+IP +     TF++ SY GN  LCGLP    C 
Sbjct:   944 LDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCI 1002

Query:   772 SLATMSEASTS-------NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRW 824
             S       S S       NE + N+IDM  F+ T    Y+     +   LY++  W R W
Sbjct:  1003 SQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREW 1062

Query:   825 LYLVEMWI 832
              Y V++ +
Sbjct:  1063 FYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 286/854 (33%), Positives = 429/854 (50%)

Query:     4 FPSLNTLHLESNNFTATLTTTQE---LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
             F  L +L+L S  F       +    L +  NLE L L  +    S+L  +     SLK 
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKT 107

Query:    61 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXX 120
             L +      G    Q   +  SLE LD++F + +      Q+  + +             
Sbjct:   108 LILHDNLFKGGFPVQELINLTSLEVLDLKFNKFSG-----QLPTQELTNLRNLRALDLSN 162

Query:   121 XXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
                   +  QG+C L  LQEL +  N   G +P C +  + LR+LD+S N L+G I    
Sbjct:   163 NKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF- 221

Query:   181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH-SLTPKFQLK 239
             +    S+E L L +N F    SL  +   ++LK+F   +     +I E++ S   + QL 
Sbjct:   222 ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLS 281

Query:   240 SLSLSS-NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
             S+ LS  N G     P FL++Q EL+  +LS+  + G FP WLLENNT+L+ L L N+S 
Sbjct:   282 SIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSF 338

Query:   299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 358
                  LP  + +RL+ LD+S NNF   +P ++G IL SL + N+S N   G++PSS   +
Sbjct:   339 K-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARM 396

Query:   359 IFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGN 418
               ++F+DLS N  +G++P +L   C              G I  +     +L  L+++ N
Sbjct:   397 ENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNN 456

Query:   419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
              F G+IP++L     L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     
Sbjct:   457 MFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFN 515

Query:   479 LDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 535
             +  L +LD+S N +SGSLP   S  Y   I  +H   N L G + +  ++    L  LDL
Sbjct:   516 IPYLWLLDLSGNFLSGSLPLRSSSDYGY-ILDLH--NNNLTGSIPDTLWYG---LRLLDL 569

Query:   536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSC 595
               N L+G+IP        +S + L  NNL G++P+                  +  IPSC
Sbjct:   570 RNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSC 628

Query:   596 FDNTTLHESYNNNSSPD-KP------FKTSFS-------ISGPQGSVEKKI-LEI-FEFT 639
               N +     ++N+  D  P      F   ++       I   + S++  +   +  EF 
Sbjct:   629 VTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFA 688

Query:   640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 699
              K     Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+G+IP +FSN
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:   700 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 759
             LR IESLDLS+NKL G IP QL  L +L +F V+YNNLSG IP+   QF TF + SY GN
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGN 807

Query:   760 PFLCGLPLPICRSLATMSEASTSNEGDDN-LIDMDSFFITFTISYVIVIFGIVVVLYVNP 818
               LCG P        T+S      + D++ L+D+   + +   +YV V+ G +V L  + 
Sbjct:   808 FLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDS 867

Query:   819 YWRRRWLYLVEMWI 832
              WRR W  LV+ +I
Sbjct:   868 PWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 286/857 (33%), Positives = 421/857 (49%)

Query:     6 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS----SLHISLLQSIGSIFPSLKNL 61
             +L  L L SN+F  ++     L+  T+L  L +  +     L I  L+++  +   L +L
Sbjct:   139 NLEILDLSSNSFNNSIFPF--LNAATSLTTLFIQSNYIGGPLPIKELKNLTKL--ELLDL 194

Query:    62 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXX 121
             S SG   NG +    F H + L+ LD+     +   S +++  + +              
Sbjct:   195 SRSG--YNGSIPE--FTHLEKLKALDLSANDFS---SLVEL--QELKVLTNLEVLGLAWN 245

Query:   122 XXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
                  I  +  C + +L++L +  N   G LP CL N   LR+LD+S NQL+G++ +S  
Sbjct:   246 HLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-F 304

Query:   182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
               L S+E L LS+N+F    SL PL N +KLK+F   +     ++    +  PKFQL   
Sbjct:   305 NSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVA 364

Query:   242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
             +L   +      P FL +Q  L+  +LS  ++ G+ P WLLENN +L+ L L N+S    
Sbjct:   365 ALP--FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-I 421

Query:   302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
             F++P   HK L+ LD S N+  G +P  IG +LP L++ N S N   G++PSS G +  +
Sbjct:   422 FQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDI 480

Query:   362 QFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFV 421
              FLDLS N  +GE+P  L   C              G I      L +L  L +  N F 
Sbjct:   481 SFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFT 540

Query:   422 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVMPKNHLEGPIPVEFCRLD 480
             GEI   L    +L     +NN L+G I   +  +   L  +++  N LEG +P     + 
Sbjct:   541 GEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIH 600

Query:   481 SLQILDISDNNISGSLPSCFYP--LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
              L  LD+S N +SG LPS        IK + L  N   G L      N      LDL  N
Sbjct:   601 HLNFLDLSGNLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENA---YILDLRNN 656

Query:   539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDN 598
              L+GSIP +++   ++  L L  NNL G +P                   +G+IP C ++
Sbjct:   657 KLSGSIPQFVN-TGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNH 715

Query:   599 --TTLHESYN-NNSSPDKPFKTSFSISGPQGS--VEK---------KILEIFEFTTKNIA 644
               T L E    +  S +  F  S  +   + +  V++          I+EI EF  K   
Sbjct:   716 LSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEI-EFAAKQRY 774

Query:   645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
              ++ G  L  + GLDLS N+L G IP ++G+L++++ LNLS N L+ +IP  FS L+ IE
Sbjct:   775 DSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIE 834

Query:   705 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG 764
             SLDLSYN L G IP QL +L +LA+F V++NNLSG IP+   QF TFN +SY GNP LCG
Sbjct:   835 SLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCG 893

Query:   765 LPLP-ICRSLATMSEASTSNE------GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVN 817
              P    C       EA    E       D+  IDM   + T   +Y I + GI+V++  +
Sbjct:   894 TPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFD 953

Query:   818 PYWRRRWLYLVEMWITS 834
               WRR WL +V+ +I S
Sbjct:   954 CPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 275/834 (32%), Positives = 406/834 (48%)

Query:     6 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 65
             SL+  +   N     +   + L    NL+ L    +  + S+   + +   SL  LS+  
Sbjct:    96 SLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRR 154

Query:    66 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXX 125
               + G +  +   +  +LE LD+   RI      + +     P                 
Sbjct:   155 NNMYGPIPLKELKNLTNLELLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYS 209

Query:   126 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185
              +  Q  C + +LQEL +   +  G LP C  N   LR LD+S NQLTG+I  S    L 
Sbjct:   210 SMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLE 268

Query:   186 SIEELRLSNNHFRIPVSLEPLFNHSKLK--IFDAKNNEINGEINESHSLTPKFQLKSLSL 243
             S+E L LS+N F    SL PL N +KLK  IF +K++ +  +I ES +  P FQL  L L
Sbjct:   269 SLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKI-ES-TWQPLFQLSVLVL 326

Query:   244 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR 303
                  + +  P FL +Q  L   +LS  ++ G  P WLLENN +LE L L N+S    F+
Sbjct:   327 RLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQ 383

Query:   304 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 363
             +P   H  L+ LD S NN  G  P   G +LP+LV+ N S N   G+ PSS G +  + F
Sbjct:   384 MPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISF 442

Query:   364 LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
             LDLS N L+GE+P      C              GH   R  +  +L  L +  N F G+
Sbjct:   443 LDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGK 502

Query:   424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
             I   L     L  L ++NN L G++P  L   + L  + +  N L G +P     LD+  
Sbjct:   503 IGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN-- 559

Query:   484 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543
             +L + +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N L G 
Sbjct:   560 VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGY 616

Query:   544 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHE 603
             IP  +   S++  L+L+ N L G +P                   +  +    ++  L  
Sbjct:   617 IPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESFYL-- 672

Query:   604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 663
              +  ++   + F+  +S       ++ K      + +   A+ +    L+ + GLDLS N
Sbjct:   673 GFYKSTFVVENFRLDYS---NYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSN 729

Query:   664 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 723
             +L G IP ++G+L +++ LNLSHN L+  IP +FS L+ IESLDLSYN L G IP QL +
Sbjct:   730 ELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTN 789

Query:   724 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI-CRSLATMSEASTS 782
             L +LAIF V+YNNLSG IP+   QF TF+++SY GNP LCG P    C +     E +  
Sbjct:   790 LTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANG 848

Query:   783 NEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 834
              E DD    IDM  F+ +   +YV  + GI+V++ V+  WRR WL LV+ +I S
Sbjct:   849 GEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 277/854 (32%), Positives = 405/854 (47%)

Query:    13 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 72
             E N F   +   + L    NL+ + L  +  + S    + +   SL  L ++  E++G  
Sbjct:   106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDGPF 164

Query:    73 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGL 132
               +G     +LE LD+R  +  LN S  ++I                          Q L
Sbjct:   165 PIKGLKDLTNLELLDLRANK--LNGSMQELIHLKKLKALDLSSNKFSSSMEL-----QEL 217

Query:   133 CPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
               L +L+ L +  N + G +P        +LR LD+  N   G I   PL  L S+++LR
Sbjct:   218 QNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI---PLC-LGSLKKLR 273

Query:   192 ---LSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS--LS 244
                LS+N     +P S   L     L+     +N  +G    S SL P   L +L   + 
Sbjct:   274 VLDLSSNQLSGDLPSSFSSL---ESLEYLSLSDNNFDG----SFSLNPLTNLTNLKFVVV 326

Query:   245 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 304
               +      P FL +Q +L+  +LS   + G  P WLL NN +LE L L N+S    F +
Sbjct:   327 LRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPI 385

Query:   305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 364
             P   H  L+  D S NN  G  P ++   LP+LV  N S N   G  P+S G +  + FL
Sbjct:   386 PTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFL 443

Query:   365 DLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEI 424
             DLS N  +G++P      CV             G    R  +  +L  L ++ N F G I
Sbjct:   444 DLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNI 503

Query:   425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 484
                LS  + L+ L ++NN LSG IPRWL     L ++++  N LEG IP     +  L  
Sbjct:   504 GGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSF 563

Query:   485 LDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543
             LD+S N  SG+LPS     L I  + L  N   G + + T     S+  LDL  N L+GS
Sbjct:   564 LDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGS 619

Query:   544 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT--- 600
             IP + D    ++ L L  NNL G +P                   +G+IPSC  N +   
Sbjct:   620 IPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGR 678

Query:   601 LHE---------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE--FTTKNIAYAYQG 649
             L E         S+   S   + +K++F +   +  V++   +  E  F  K    +Y G
Sbjct:   679 LQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIE--VDRSTYQETEIKFAAKQRYDSYSG 736

Query:   650 R------VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
             R      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L G+IP +FS L  +
Sbjct:   737 RSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDV 796

Query:   704 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 763
             ESLDLS+N L G IP+ L  L +LA+F V+ NNLSG IP+   QF TF + SY GNP LC
Sbjct:   797 ESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLC 855

Query:   764 GLPLP-ICRSLATMSEASTSNEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYW 820
             G P    C +  +  EA    E +D+   IDM  F+ +    YV  + G++V++  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:   821 RRRWLYLVEMWITS 834
             RR WL +V+ +I S
Sbjct:   916 RRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 227/710 (31%), Positives = 357/710 (50%)

Query:   132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
             L  L  L+ L + +N L G++P  L +  SL  L +  N   GS S   L +L+++  L+
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:   192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
             L +    + V  E  +   K ++        N E    H L  +  L+ + LS N   S 
Sbjct:   324 LCSKSSSLQVLSESSWK-PKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDN-NISG 380

Query:   252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VND-SLAGPFRLP-IHS 308
               P +L   +   +  L    +   F   + ++   L FL +  ND +   P  +  I  
Sbjct:   381 KLPSWLLANNTKLKVLLLQNNLFTSFQ--IPKSAHNLLFLDVSANDFNHLFPENIGWIFP 438

Query:   309 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-LQFLDLS 367
             H  LR+L+ S NNFQ ++P  +G+ +  + Y ++S N+  G++P SF N  + +  L LS
Sbjct:   439 H--LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLS 495

Query:   368 NNKLTGEI-PDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 426
             +NKL+GEI P+      +             G I   + SL NL  L +  N+  G IP 
Sbjct:   496 HNKLSGEIFPESTNFTNILGLFMDNNLFT--GKIGQGLRSLINLELLDMSNNNLTGVIPS 553

Query:   427 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 486
              + +  SL  L +++N L G IP  L N   LQ + +  N L G IP +    + + +L 
Sbjct:   554 WIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLL- 612

Query:   487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 546
             + DN +SG++P      +++ + L  N   G++ E  F N  ++  L L  N   G IP 
Sbjct:   613 LQDNKLSGTIPDTLLA-NVEILDLRNNRFSGKIPE--FINIQNISILLLRGNNFTGQIPH 669

Query:   547 WIDGLSQLSHLNLAHNNLEGEVP-IXXXXXXXXXXXXXXXXXXHGL-IPS-CFDNTTLHE 603
              + GLS +  L+L++N L G +P                     G+  PS  F+  +LH+
Sbjct:   670 QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQ 729

Query:   604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEI-FEFTTKNIAYAYQGRVLSLLAGLDLSC 662
              +++N +    FK+  ++  P     K   +   EF TK+   AY G  L LL G+DLS 
Sbjct:   730 DFSSNKNGGIYFKSLLTLD-PLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 722
             N+L G IP + G L  ++ LNLSHNNL+G IP + S++  +ES DLS+N+L G+IP QL 
Sbjct:   789 NELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLT 848

Query:   723 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTS 782
             +L +L++F V++NNLSG IP+   QF TF+  SY GN  LCG P     +  +  EA   
Sbjct:   849 ELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNG 907

Query:   783 NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 832
              E D+++IDM SF+++F  +YV ++ GI+  L  +  W R W Y V+ +I
Sbjct:   908 VEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 7.1e-64, P = 7.1e-64
 Identities = 235/830 (28%), Positives = 379/830 (45%)

Query:     1 MGSFPSLNTLHLESNNFTATLTTTQELHNFTN-LEYLTLDDSSLHISLLQSIGSIFPSLK 59
             +G F +L  + L SN     + TT  L N ++ LE L L  + L   +   +GS+  +LK
Sbjct:    91 IGRFNNLIHIDLSSNRLVGPIPTT--LSNLSSSLESLHLFSNLLSGDIPSQLGSLV-NLK 147

Query:    60 NLSMSGCEVNGVLSGQGFPHFKSLEHLDM-----------RFARIA-LNTSFLQI--IGE 105
             +L +   E+NG +  + F +  +L+ L +           RF R+  L T  LQ   +  
Sbjct:   148 SLKLGDNELNGTIP-ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEG 206

Query:   106 SMPXXXXXXXXXXXXXXXXXRI---LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 162
              +P                 R+   L   L  L +LQ L + +N   G +P  L +  S+
Sbjct:   207 PIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSI 266

Query:   163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 222
             + L++  NQL G I    L  L +++ L LS+N+    V  E  +  ++L+      N +
Sbjct:   267 QYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLT-GVIHEEFWRMNQLEFLVLAKNRL 324

Query:   223 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 282
             +G + ++   +    LK L LS     S   P  + +   LK  +LS+  + G+ P+ L 
Sbjct:   325 SGSLPKT-ICSNNTSLKQLFLSETQL-SGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLF 382

Query:   283 ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 342
             +   +L  LYL N+SL G     I +   L+   + +NN +G +P EIG  L  L    +
Sbjct:   383 QL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG-FLGKLEIMYL 440

Query:   343 SMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFS 402
               N   G +P   GN   LQ +D   N+L+GEIP  +                  G+I +
Sbjct:   441 YENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL-KDLTRLHLRENELVGNIPA 499

Query:   403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
              + +   +  + L  N   G IP S    ++L+   + NN+L G +P  L NLK L  I 
Sbjct:   500 SLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRIN 559

Query:   463 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP-SCFYPLSIKQVHLSKNMLHGQLKE 521
                N   G I    C   S    D+++N   G +P       ++ ++ L KN   G++  
Sbjct:   560 FSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR 618

Query:   522 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXX 581
              TF   S L  LD+S N L+G IP  +    +L+H++L +N L G +P            
Sbjct:   619 -TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGEL 677

Query:   582 XXXXXXXHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFT 639
                     G +P+  F  T +   + + +S       + SI    G+++    L + E  
Sbjct:   678 KLSSNKFVGSLPTEIFSLTNILTLFLDGNS------LNGSIPQEIGNLQALNALNLEENQ 731

Query:   640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFS 698
                   +  G+ LS L  L LS N L G IP +IG L  +Q+ L+LS+NN TG IP T S
Sbjct:   732 LSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTIS 790

Query:   699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 758
              L  +ESLDLS+N+L G++P Q+ D+ +L    ++YNNL GK+ +   QF+ +   ++ G
Sbjct:   791 TLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVG 847

Query:   759 NPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIF 808
             N  LCG PL  C    + ++ S S +    +  + S      +  VI++F
Sbjct:   848 NAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILF 897

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.5e-61, P = 7.5e-61
 Identities = 199/650 (30%), Positives = 297/650 (45%)

Query:   132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
             +C  + L  +  D N+L G +P CL +   L++   + N LTGSI  S +  L ++ +L 
Sbjct:   164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLD 222

Query:   192 LSNNHF--RIPVSLEPLFNHSKLKIFD-AKNNEINGEINESHSLTPKFQLKSLSLSSNYG 248
             LS N    +IP     L N   L + +     +I  EI    SL  + +L    L+    
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLV-QLELYDNQLTGK-- 279

Query:   249 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 308
                  P  L +  +L+   +   K+    P+ L    T+L  L L  + L GP    I  
Sbjct:   280 ----IPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGF 334

Query:   309 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 368
              + L  L + +NNF G  P  I + L +L    +  N + G +P+  G +  L+ L   +
Sbjct:   335 LESLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393

Query:   369 NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 428
             N LTG IP  ++ C               G I  R F   NL ++ +  NHF GEIP  +
Sbjct:   394 NLLTGPIPSSISNC-TGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDI 451

Query:   429 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 488
               CS+L+ L + +NNL+G +   +G L+ L+ + +  N L GPIP E   L  L IL + 
Sbjct:   452 FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query:   489 DNNISGSLPSCFYPLSIKQ-VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
              N  +G +P     L++ Q + +  N L G + E   F+   L  LDLS N  +G IP  
Sbjct:   512 SNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPAL 570

Query:   548 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIP----SCFDNTTLHE 603
                L  L++L+L  N   G +P                    G IP    +   N  L+ 
Sbjct:   571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query:   604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG---LDL 660
             +++NN        T  +I    G +E  + EI    + N+      R L        LD 
Sbjct:   631 NFSNN------LLTG-TIPKELGKLEM-VQEID--LSNNLFSGSIPRSLQACKNVFTLDF 680

Query:   661 SCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
             S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS N L+G+IP 
Sbjct:   681 SQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPE 740

Query:   720 QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 769
              L +L+TL    +A NNL G +PE +  F   N S   GN  LCG   P+
Sbjct:   741 SLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL 789

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 204/694 (29%), Positives = 331/694 (47%)

Query:   146 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSL 203
             N   GS+P  L + T+L+ LD+S N + G++S   +  L +++EL L  N     IP  +
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIGGAIPSEI 198

Query:   204 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 263
               L    +L     + N  N  I  S S   K  LK++ L +N+  S   P  + +   L
Sbjct:   199 GSLV---ELLTLTLRQNMFNSSIPSSVSRLTK--LKTIDLQNNFLSS-KIPDDIGNLVNL 252

Query:   264 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS-LAGPFRLP-IHSHKRLRFLDVSNNN 321
                 LS  K+ G  P+  + N   LE L L N++ L+G      +   ++L+ L +  NN
Sbjct:   253 STLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNN 311

Query:   322 -FQGHIPVEIGDILPSLVYFNISMNA--LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 378
               Q +     G + P     ++S+ +  L+G+IP    N   L +LDLS N+L G  P  
Sbjct:   312 KLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKW 368

Query:   379 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 438
             LA   +             G +   +F   +L +L+L  N+F G+IP ++ + S +  L 
Sbjct:   369 LADLKIRNITLSDNRLT--GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQVMVLM 425

Query:   439 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498
             L+ NN SG +P+ +  +  L+ + + KN L G  P  F     L+ LDIS N  SG +P+
Sbjct:   426 LSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPA 484

Query:   499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ-LSHL 557
              ++  S   + +S+N   G+  +  F N S L+ LDL  N ++G++   I  LS  +  L
Sbjct:   485 -YFGGSTSMLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVL 542

Query:   558 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT-LHESYNNNSSPDKPFK 616
             +L +N+L+G +P                    G +PS   N T + +S   ++   +P+ 
Sbjct:   543 SLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYF 602

Query:   617 TSFS-ISGPQGSVEKKILEIFEFTT--KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673
             +S++ I   +  +E +  +IF      KN       R   L   LDLS NKL G IP  +
Sbjct:   603 SSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSL 662

Query:   674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733
             GNL  ++ LNLS+N  +G IP +F +L  +ESLDLS+N L+G+IP+ L  L+ L    + 
Sbjct:   663 GNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLR 722

Query:   734 YNNLSGKIPEWTAQFATFNKSS-YDGNPFLCGLPLPI-CRSLATMSEASTSNEGD----D 787
              N L G+IPE + Q    N  + Y  N  +CG+ + + C    T   A    E D    +
Sbjct:   723 NNKLKGRIPE-SPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEE 781

Query:   788 NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWR 821
              +   ++  I  +  ++I     VV +  N  W+
Sbjct:   782 TIFSWNAAAIGCSCGFLIA----VVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	850
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-45
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  235 bits (601), Expect = 3e-65
 Identities = 204/659 (30%), Positives = 293/659 (44%), Gaps = 120/659 (18%)

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT-SLRILDVSFNQLTGSISSS 179
           G N S  +   +  L ++Q + + NN L G +P  +  T+ SLR L++S N  TGSI   
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG 137

Query: 180 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
            + +L   E L LSNN                       + EI  +I    S      LK
Sbjct: 138 SIPNL---ETLDLSNNML---------------------SGEIPNDIGSFSS------LK 167

Query: 240 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 299
            L L  N                          ++G+ PN  L N T LEFL L ++ L 
Sbjct: 168 VLDLGGNV-------------------------LVGKIPNS-LTNLTSLEFLTLASNQLV 201

Query: 300 GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI 359
           G     +   K L+++ +  NN  G IP EIG  L SL + ++  N L G IPSS GN+ 
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLK 260

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419
            LQ+L L  NKL+G IP  +      L  L LS+NSL G I   +  L+NL  L L  N+
Sbjct: 261 NLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 479
           F G+IP +L+    L+ L L +N  SG+IP+ LG    L  + +  N+L G IP   C  
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 480 DSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
            +L  L +  N++ G +P       S+++V L  N   G+L    F     +  LD+S N
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNN 438

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
            L G I      +  L  L+LA N   G +P       +L+ LDLS N   G +P    +
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGS 497

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                                LS L  L
Sbjct: 498 -----------------------------------------------------LSELMQL 504

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
            LS NKL G IP ++ +  ++ +L+LSHN L+G IP +FS +  +  LDLS N+LSG+IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 719 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG----LPLPICRSL 773
           + L ++ +L    +++N+L G +P  T  F   N S+  GN  LCG      LP C+ +
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV 622

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  206 bits (525), Expect = 3e-55
 Identities = 149/438 (34%), Positives = 217/438 (49%), Gaps = 42/438 (9%)

Query: 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNN 369
           R+  +D+S  N  G I   I   LP +   N+S N L G IP   F     L++L+LSNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 370 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 429
             TG IP         LE L LSNN L G I + I S  +L+ L L GN  VG+IP SL+
Sbjct: 129 NFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
             +SL+ L L +N L G+IPR LG +K L+ I +  N+L G IP E   L SL  LD+  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 490 NNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
           NN++G +PS    L  ++ + L +N L G +   + F+   L++LDLS N L+G IP+ +
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 549 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF---DNTTLHESY 605
             L  L  L+L  NN  G++P+ L  L +LQ+L L  N   G IP      +N T+ +  
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
            NN + + P     S                            G +  L+    L  N L
Sbjct: 365 TNNLTGEIPEGLCSS----------------------------GNLFKLI----LFSNSL 392

Query: 666 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725
            G IP  +G    ++ + L  N+ +G +P  F+ L  +  LD+S N L G+I  +  D+ 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 726 TLAIFIVAYNNLSGKIPE 743
           +L +  +A N   G +P+
Sbjct: 453 SLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  176 bits (449), Expect = 1e-45
 Identities = 176/590 (29%), Positives = 269/590 (45%), Gaps = 120/590 (20%)

Query: 6   SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 65
           SL  L+L +NNFT ++       +  NLE L L ++ L   +   IGS F SLK L + G
Sbjct: 119 SLRYLNLSNNNFTGSIPRG----SIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGG 173

Query: 66  CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 125
                VL G+      +L                         SL++L+L+ + L     
Sbjct: 174 ----NVLVGKIPNSLTNLT------------------------SLEFLTLASNQLVGQIP 205

Query: 126 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185
           R L Q    +  L+ +Y+  N+L G +P+ +   TSL  LD+ +N LTG I SS L +L 
Sbjct: 206 RELGQ----MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLK 260

Query: 186 SIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS 245
           +++ L L  N    P+    +F+  KL   D  +N ++GEI E        QL++L    
Sbjct: 261 NLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPEL-----VIQLQNL---- 310

Query: 246 NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP 305
                                                      E L+L +++  G   + 
Sbjct: 311 -------------------------------------------EILHLFSNNFTGKIPVA 327

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 365
           + S  RL+ L + +N F G IP  +G                         N   L  LD
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLG----------------------KHNN---LTVLD 362

Query: 366 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 425
           LS N LTGEIP+ L     NL  L L +NSL+G I   + + R+LR + L+ N F GE+P
Sbjct: 363 LSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 426 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485
              +K   +  L ++NNNL G+I     ++  LQ + + +N   G +P +      L+ L
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENL 480

Query: 486 DISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 544
           D+S N  SG++P     LS + Q+ LS+N L G++ +    +C  LV+LDLS+N L+G I
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQI 539

Query: 545 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 594
           P     +  LS L+L+ N L GE+P  L  +  L  +++S N+LHG +PS
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 1e-16
 Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716
           GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 717 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTA----QFATFNKSSYDGNPFLCGLP-LPIC 770
           IP  L  L +L I  +  N+LSG++P          A+FN   +  N  LCG+P L  C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 8e-11
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419
           F+  L L N  L G IP+ ++    +L+ ++LS NS++G+I   + S+ +L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
           F G IP+SL + +SL+ L LN N+LSG++P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 527
           L G IP +  +L  LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 572
           +SL  LDLSYN  NGSIP+ +  L+ L  LNL  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 291 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 350
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I  SL   ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 351 IPSSFGNVIFLQFLDLSNNKLTGEIP 376
           IP S G +  L+ L+L+ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query: 422 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 481
           G IP  +SK   L+ + L+ N++ G IP  LG++  L+ + +  N   G IP    +L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 482 LQILDISDNNISGSLPS 498
           L+IL+++ N++SG +P+
Sbjct: 492 LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query: 389 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           L L N  L+G I + I  LR+L+ + L GN   G IP SL   +SL+ L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIP 473
           P  LG L  L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           L + N   +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHI 400
           IP+ L     +L  L+L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 679 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
           I  L L +  L G IP   S LRH++S++LS N + G IP  L  + +L +  ++YN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 739 GKIPEWTAQFATFNKSSYDGNPFLCG 764
           G IPE   Q  +    + +GN  L G
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
           L HLQ + +  N +RG++P  L + TSL +LD+S+N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 195 NHF--RIPVSL 203
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592
           L L    L G IP+ I  L  L  +NL+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 593 P 593
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 530 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           L +++LS N + G+IP  +  ++ L  L+L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 590 GLIPSCFDNTTLHESYNN 607
           G +P+      LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 508 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 564
           + LS N L   + +G F    +L  LDLS N L    P+   GL  L  L+L+ NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 53/141 (37%)

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 613
           +  L L +  L G +P  + +L  LQ ++LS N++ G IP    +               
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------------- 464

Query: 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673
                  I+                                L  LDLS N   G IP  +
Sbjct: 465 -------ITS-------------------------------LEVLDLSYNSFNGSIPESL 486

Query: 674 GNLTRIQTLNLSHNNLTGTIP 694
           G LT ++ LNL+ N+L+G +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 658 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713
           LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
           L   T L  L L N+++     L       L+ LD+S+N  +  +P  + + LP+L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           +S N L   +P    N+  L  LDLS NK++ ++P  + +    LE L LSNN     I 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNN----SII 222

Query: 402 SRIFSLRNLRWLLLEG--NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 459
             + SL NL+ L      N+ + ++P+S+   S+L+ L L+NN +S      LG+L  L+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 460 HIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSCFY 501
            + +  N L   +P+     L    +L++     +  L     
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 529 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
           +L +LDLS N L         GL  L  L+L+ NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 82/337 (24%), Positives = 130/337 (38%), Gaps = 20/337 (5%)

Query: 78  PHFKSLEHLDMRFARIAL----NTSFLQIIGESMPSLKYLSLS-GSTLGTNSSRILDQGL 132
                   L     R  L      +  Q I  + P     S++        SS  L    
Sbjct: 4   AENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLP 63

Query: 133 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 192
             L+ L  L + +     SL         L +  +  N      + S L+ LT++  L L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 193 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 252
            NN+    +        S LK  D  +N+I    +   +L     LK+L LS N  D   
Sbjct: 124 DNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP---NLKNLDLSFN--DLSD 177

Query: 253 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 312
            PK L +   L   +LS  K I + P   +E  + LE L L N+S+       + + K L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNK-ISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
             L++SNN  +          L +L   ++S N +  S  SS G++  L+ LDLS N L+
Sbjct: 235 SGLELSNNKLEDLPESIGN--LSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLS 290

Query: 373 GEIPDHLAM--CCVNLEFLSLSNNSLKGHIFSRIFSL 407
             +P    +      L  L L+  +L+  + S + + 
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 82/260 (31%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMC------CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 414
           L+ L LS N+ TG IP  L            L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--------------- 96

Query: 415 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 474
             G   +    +SL + SSL+ L LNNN L  +  R L   KGL+ +             
Sbjct: 97  --GCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLP------------ 136

Query: 475 EFCRLDSLQILDISDNNISGSLPSCFYPLS--------IKQVHLSKNMLHGQ----LKEG 522
               L+    L +  N + G+  SC   L+        +K+++L+ N +       L EG
Sbjct: 137 --PALEK---LVLGRNRLEGA--SCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 523 TFFNCSSLVTLDLSYNYLN--------GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ--- 571
              NC +L  LDL+ N L          ++         L  LNL  NNL  +       
Sbjct: 189 LKANC-NLEVLDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNL-TDAGAAALA 242

Query: 572 ---LCRLNQLQLLDLSDNNL 588
              L     L  L LS N++
Sbjct: 243 SALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 32  NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 91
             E L  + ++  +  L  +  +      L     +              SL+ L +   
Sbjct: 6   KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK----ALASALRPQPSLKELCLSLN 61

Query: 92  RIALNTSFLQIIGESMPS---LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 148
                   LQ + + +     L+ L LS + LG +   +L + L   + LQEL ++NN L
Sbjct: 62  ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGL 120

Query: 149 RGSLPWCLA-----NTTSLRILDVSFNQLTGSIS---SSPLVHLTSIEELRLSNNHFR-- 198
                  LA        +L  L +  N+L G+     +  L     ++EL L+NN     
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 199 -IPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSN 246
            I    E L  +  L++ D  NN +   G    + +L     L+ L+L  N
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 737
            +++L+LS+N LT      F  L +++ LDLS N L+   P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 382 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 441
             ++L+ LS S  S      + + +L  L  L L  N     I   L + ++L  L L+N
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDN 125

Query: 442 NNLSGKIPRWLGNLK-GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 500
           NN++  IP  +G LK  L+ + +  N +E  +P     L +L+ LD+S N++S       
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 501 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
              ++  + LS N +            S+L  LDLS N +   +   +  L  LS L L+
Sbjct: 184 NLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
           +N LE ++P  +  L+ L+ LDLS+N +
Sbjct: 241 NNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
           L+ LDLSNN+LT  IPD       NL+ L LS N+L   I    FS L +LR L L GN+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 420 F 420
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 468
           NL+ L L  N        +     +LK L L+ NNL+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 492
           +LK L L+NN L+         L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 137 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 196
           +L+ L + NN L            +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 197 F 197
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 287 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 346
            L+ + L  +S+ G     + S   L  LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 347 LDGSIPSSFG 356
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 385 NLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 443
           NL+ L LSNN L   I    F  L NL+ L L GN+     P++ S   SL+ L L+ NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 444 L 444
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370
            L+ LD+SNN     IP      LP+L   ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 371 L 371
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	850
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PLN03150	623	hypothetical protein; Provisional	99.51
PLN03150	623	hypothetical protein; Provisional	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
KOG4341	483	consensus F-box protein containing LRR [General fu	98.44
KOG4341	483	consensus F-box protein containing LRR [General fu	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
PRK15386	426	type III secretion protein GogB; Provisional	97.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.23
KOG4308	478	consensus LRR-containing protein [Function unknown	94.07
KOG4308	478	consensus LRR-containing protein [Function unknown	91.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.58
smart00370	26	LRR Leucine-rich repeats, outliers.	89.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.07
smart00370	26	LRR Leucine-rich repeats, outliers.	89.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.93

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.7e-60  Score=575.72  Aligned_cols=540  Identities=36%  Similarity=0.536  Sum_probs=416.4

Q ss_pred             CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCcccc-CCCCCCEEECCCCcCcCCCCcccccCCCCC
Q 003084          109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-NTTSLRILDVSFNQLTGSISSSPLVHLTSI  187 (850)
Q Consensus       109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  187 (850)
                      +++.|++++|.+.+   .++ ..+..+++|++|+|++|++.+.+|..+. ++++|++|++++|.+++.+|.   ..+++|
T Consensus        70 ~v~~L~L~~~~i~~---~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L  142 (968)
T PLN00113         70 RVVSIDLSGKNISG---KIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL  142 (968)
T ss_pred             cEEEEEecCCCccc---cCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence            45556665555544   222 3455555555555555555544444332 555555555555555444433   234445


Q ss_pred             CeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEE
Q 003084          188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE  267 (850)
Q Consensus       188 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~  267 (850)
                      ++|++++|.+.+                                                    .+|..+..+++|+.|+
T Consensus       143 ~~L~Ls~n~~~~----------------------------------------------------~~p~~~~~l~~L~~L~  170 (968)
T PLN00113        143 ETLDLSNNMLSG----------------------------------------------------EIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CEEECcCCcccc----------------------------------------------------cCChHHhcCCCCCEEE
Confidence            555555544432                                                    2334444555566666


Q ss_pred             ccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084          268 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL  347 (850)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  347 (850)
                      +++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+
T Consensus       171 L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCcee
Confidence            66666666666554 56677777777777776666666777777777777777777667666544 67788888887777


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcC
Q 003084          348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS  427 (850)
Q Consensus       348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  427 (850)
                      ++..|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            777777777788888888888877766776654 3778888888888877777777778888888888888887777777


Q ss_pred             CCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCccc
Q 003084          428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIK  506 (850)
Q Consensus       428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~  506 (850)
                      +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..|..+. +++|+
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~  407 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR  407 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence            77888888888888888777777788888888888888888777777787788888888888888777776554 66788


Q ss_pred             EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCC
Q 003084          507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN  586 (850)
Q Consensus       507 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  586 (850)
                      .|++++|.+++.++. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|
T Consensus       408 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n  485 (968)
T PLN00113        408 RVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN  485 (968)
T ss_pred             EEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC
Confidence            888888888777776 78899999999999999999999888999999999999999998888765 4689999999999


Q ss_pred             cCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc
Q 003084          587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV  666 (850)
Q Consensus       587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  666 (850)
                      ++++..|..+..+                                                     ++|++|++++|++.
T Consensus       486 ~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~Ls~N~l~  512 (968)
T PLN00113        486 QFSGAVPRKLGSL-----------------------------------------------------SELMQLKLSENKLS  512 (968)
T ss_pred             ccCCccChhhhhh-----------------------------------------------------hccCEEECcCCcce
Confidence            9998888777653                                                     38999999999999


Q ss_pred             cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcc
Q 003084          667 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA  746 (850)
Q Consensus       667 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~  746 (850)
                      +.+|+.+.++++|+.|+|++|.+++.+|..|+.+++|+.|||++|++++.+|..+..+++|+.+++++|+++|.+|.. +
T Consensus       513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~  591 (968)
T PLN00113        513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-G  591 (968)
T ss_pred             eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985 7


Q ss_pred             ccCCCCccccCCCCCCCCCC
Q 003084          747 QFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       747 ~~~~~~~~~~~~n~~~c~~~  766 (850)
                      ++.++....+.|||.+|+.+
T Consensus       592 ~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        592 AFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hhcccChhhhcCCccccCCc
Confidence            88999999999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-55  Score=533.97  Aligned_cols=520  Identities=32%  Similarity=0.504  Sum_probs=469.1

Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEE
Q 003084          136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  215 (850)
Q Consensus       136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  215 (850)
                      .+++.|++++|.+.+..+..|..+++|+.|++++|.+++.+|...+..+++|++|++++|.+.+..+.            
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------  136 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------------
Confidence            46788888888888777778888888888888888887777775555778888888887776643321            


Q ss_pred             EccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccC
Q 003084          216 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  295 (850)
Q Consensus       216 ~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  295 (850)
                                                                ..+++|++|++++|.+.+.+|..+ +.+++|++|++++
T Consensus       137 ------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~  173 (968)
T PLN00113        137 ------------------------------------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGG  173 (968)
T ss_pred             ------------------------------------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECcc
Confidence                                                      123467778888888888888875 7899999999999


Q ss_pred             CcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCc
Q 003084          296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  375 (850)
Q Consensus       296 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  375 (850)
                      |.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence            9999999999999999999999999999888877655 889999999999999999999999999999999999999888


Q ss_pred             chHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCC
Q 003084          376 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  455 (850)
Q Consensus       376 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  455 (850)
                      |..+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+
T Consensus       253 p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  331 (968)
T PLN00113        253 PSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL  331 (968)
T ss_pred             ChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence            87764 59999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEE
Q 003084          456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD  534 (850)
Q Consensus       456 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  534 (850)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. ..+++.+++++|.+.+.++. .+..+++|+.|+
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~  410 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVR  410 (968)
T ss_pred             CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEE
Confidence            9999999999999999999999999999999999999988887665 67899999999999988887 889999999999


Q ss_pred             CcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCC
Q 003084          535 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  614 (850)
Q Consensus       535 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (850)
                      +++|++++..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|++.+..|..+..                
T Consensus       411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~----------------  474 (968)
T PLN00113        411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----------------  474 (968)
T ss_pred             CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------
Confidence            9999999999999999999999999999999999998999999999999999998877765431                


Q ss_pred             CcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCc
Q 003084          615 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP  694 (850)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  694 (850)
                                                            ++|+.||+++|++++..|..|.++++|+.|+|++|++++.+|
T Consensus       475 --------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        475 --------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             --------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence                                                  279999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084          695 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL  767 (850)
Q Consensus       695 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  767 (850)
                      ..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+..+..+.+++|+..+..|.
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999999999999999999999999999999999999999999888899999999999999887663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-42  Score=348.47  Aligned_cols=374  Identities=25%  Similarity=0.305  Sum_probs=243.8

Q ss_pred             cEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccC
Q 003084          338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG  417 (850)
Q Consensus       338 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  417 (850)
                      +.|++++|.+....+..|.++++|+.+++.+|.++ .+|..... ..+++.|+|.+|.|.....+.+..++.|+.|||+.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            33444444444444444444444444444444444 44433221 23344444444444444444444445555555555


Q ss_pred             CcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084          418 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP  497 (850)
Q Consensus       418 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  497 (850)
                      |.++.+...+|..-.++++|+|++|.|+..-...|..+.+|..|.++.|+++...+..|.++++|+.|+|..|+|....-
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            55543333344444455555555555554444445555555555555555554444555555555555555555442212


Q ss_pred             CCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC
Q 003084          498 SCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN  576 (850)
Q Consensus       498 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  576 (850)
                      ..|. +++|+.|.+..|.+. .+.+++|.++.++++|+|+.|++...-..|+-++++|+.|++++|.|..+.++.+..++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            2222 445555555555553 45566888888888888888888877778888888888888888888877788888888


Q ss_pred             CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084          577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  656 (850)
Q Consensus       577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  656 (850)
                      +|++|+|+.|+|+...++.|..                                                     ++.|+
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~Le  344 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQLE  344 (873)
T ss_pred             cceeEeccccccccCChhHHHH-----------------------------------------------------HHHhh
Confidence            8888888888888777776654                                                     33788


Q ss_pred             eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCc---ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|+|++|++.......|..+++|++|||++|.++..+.   ..|.+|++|+.|++.+|++..+...+|++++.|+.||+.
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence            88888888887777778888888888888888876654   357778888888888888886666788888888888888


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      +|.|...-|.+|.++ .++++.+.--.++|+|.+.
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence            888888888887777 7788777777888998764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-39  Score=330.71  Aligned_cols=372  Identities=27%  Similarity=0.305  Sum_probs=261.8

Q ss_pred             ccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEc
Q 003084          312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL  391 (850)
Q Consensus       312 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  391 (850)
                      -+.||+++|++. .+...++..+++|+.+++..|.++ .+|........|+.|+|.+|.|+ ++.......++.|+.|||
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            345666666655 444444555566666666666655 45554444445666666666665 444444444566666666


Q ss_pred             cCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC
Q 003084          392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  471 (850)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  471 (850)
                      +.|.|..+....|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++...+..|.++++|+.|++..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            66666655555555555666666666666655555666666666666666666655555666666666666666666544


Q ss_pred             cchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084          472 IPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  550 (850)
Q Consensus       472 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  550 (850)
                      ....|.++++|+.|.+..|++...-...|. +.+++.|+|..|++. .+..+++.++++|+.|++++|.|..+.++..+.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence            345566666666666666666655555544 556666666666664 445558888999999999999998888888888


Q ss_pred             CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhh
Q 003084          551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK  630 (850)
Q Consensus       551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (850)
                      +++|+.|+|+.|+++...++.|..+..|++|.|++|.++.+....|..                                
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------------------------------  363 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------------------------------  363 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH--------------------------------
Confidence            999999999999999888888998999999999999887665555544                                


Q ss_pred             hhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc---cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084          631 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD  707 (850)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  707 (850)
                                           +++|++|||++|.+++.+.+   .|.++++|+.|+|.+|++..+...+|.++.+|+.||
T Consensus       364 ---------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  364 ---------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             ---------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence                                 34899999999988766543   488899999999999999987778999999999999


Q ss_pred             CcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       708 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      |.+|.|..+-|++|..+ .|+.|-+..-.+-|.+
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            99999998999999998 8888877665554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.2e-39  Score=312.05  Aligned_cols=489  Identities=27%  Similarity=0.365  Sum_probs=281.6

Q ss_pred             CCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCC
Q 003084          108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI  187 (850)
Q Consensus       108 ~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  187 (850)
                      ..|+.|.+++|.+..    +. ..+.++..|.+|++++|++. ..|.+++.+.+++.++.++|.++ .+|. .+..+.+|
T Consensus        45 v~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhh----cc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence            345666666666643    22 35566666677777777666 45666666667777777777766 6666 66666666


Q ss_pred             CeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEE
Q 003084          188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE  267 (850)
Q Consensus       188 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~  267 (850)
                      ..++.++|.+... + +.++.+..|+.++..+|++..                            .|..+..+.++..++
T Consensus       117 ~~l~~s~n~~~el-~-~~i~~~~~l~dl~~~~N~i~s----------------------------lp~~~~~~~~l~~l~  166 (565)
T KOG0472|consen  117 VKLDCSSNELKEL-P-DSIGRLLDLEDLDATNNQISS----------------------------LPEDMVNLSKLSKLD  166 (565)
T ss_pred             hhhhccccceeec-C-chHHHHhhhhhhhcccccccc----------------------------CchHHHHHHHHHHhh
Confidence            6666666665521 1 123334444444443333321                            122223333334444


Q ss_pred             ccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084          268 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL  347 (850)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  347 (850)
                      +.+++                         +....+..+. +++|++||...|.+. .+|.+.+. +.+|..|++.+|++
T Consensus       167 ~~~n~-------------------------l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  167 LEGNK-------------------------LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKI  218 (565)
T ss_pred             ccccc-------------------------hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccc
Confidence            44443                         3332222222 455555555555554 55555543 45555666666665


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcC
Q 003084          348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS  427 (850)
Q Consensus       348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  427 (850)
                      . ..| .|.++..|.+|.++.|.|. .+|.....++.++..||+.+|+++ ..|+.+.-+++|++||+++|.++ .+|.+
T Consensus       219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s  293 (565)
T KOG0472|consen  219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS  293 (565)
T ss_pred             c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence            5 344 5566666666666666666 666666656666666666666665 45555666666666666666665 44555


Q ss_pred             CCCCCCCcEEECcCCCCCCCCcccccCCCC---CcEEE--CCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCC
Q 003084          428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIV--MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP  502 (850)
Q Consensus       428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  502 (850)
                      ++++ .|+.|-+.+|++..+- ..+-....   |++|.  +..-.++.....      +-..    .....+..|.....
T Consensus       294 Lgnl-hL~~L~leGNPlrTiR-r~ii~~gT~~vLKyLrs~~~~dglS~se~~------~e~~----~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIR-REIISKGTQEVLKYLRSKIKDDGLSQSEGG------TETA----MTLPSESFPDIYAI  361 (565)
T ss_pred             cccc-eeeehhhcCCchHHHH-HHHHcccHHHHHHHHHHhhccCCCCCCccc------cccc----CCCCCCcccchhhh
Confidence            6666 6666666666654221 11111110   11110  000000000000      0000    00011222333334


Q ss_pred             CcccEEEccCcccccccCccccCCCC--CCcEEECcCCcCCCCcCccccCCCCCCE-EECcCCcCccCCchhccCCCCCC
Q 003084          503 LSIKQVHLSKNMLHGQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQ  579 (850)
Q Consensus       503 ~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~  579 (850)
                      .+.+.|++++-+++ .+|...|..-.  -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|.
T Consensus       362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt  438 (565)
T KOG0472|consen  362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcce
Confidence            45566666666654 34443444332  3667888888887 55666666655544 444555544 7778888888888


Q ss_pred             EEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEE
Q 003084          580 LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD  659 (850)
Q Consensus       580 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  659 (850)
                      .|++++|.+...+.+ +..                                                     +..|+.||
T Consensus       439 ~L~L~NN~Ln~LP~e-~~~-----------------------------------------------------lv~Lq~Ln  464 (565)
T KOG0472|consen  439 FLDLSNNLLNDLPEE-MGS-----------------------------------------------------LVRLQTLN  464 (565)
T ss_pred             eeecccchhhhcchh-hhh-----------------------------------------------------hhhhheec
Confidence            888888877644322 222                                                     23588888


Q ss_pred             ccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084          660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  738 (850)
Q Consensus       660 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  738 (850)
                      +|.|++. .+|+....+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|+.|+++||++.
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888887 77888777778888888888888777777888888888898888888 77888888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8e-38  Score=305.16  Aligned_cols=491  Identities=26%  Similarity=0.367  Sum_probs=336.4

Q ss_pred             CCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCC
Q 003084          131 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS  210 (850)
Q Consensus       131 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~  210 (850)
                      ....-..|+.+++++|.+... ...+.++..|++|++++|.++ ++|+ +++.+..++.++.++|++.. .+ ..+....
T Consensus        40 ~wW~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~-lp-~~i~s~~  114 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSE-LP-EQIGSLI  114 (565)
T ss_pred             hhhhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhh-cc-HHHhhhh
Confidence            445566788888888887743 445778888888888888887 7777 78888888888888887762 22 2233444


Q ss_pred             CccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcE
Q 003084          211 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF  290 (850)
Q Consensus       211 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  290 (850)
                      +|..++++.|.+                                                   .. +|+.+ +.+..++.
T Consensus       115 ~l~~l~~s~n~~---------------------------------------------------~e-l~~~i-~~~~~l~d  141 (565)
T KOG0472|consen  115 SLVKLDCSSNEL---------------------------------------------------KE-LPDSI-GRLLDLED  141 (565)
T ss_pred             hhhhhhccccce---------------------------------------------------ee-cCchH-HHHhhhhh
Confidence            444444444332                                                   21 12221 34445555


Q ss_pred             EEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 003084          291 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  370 (850)
Q Consensus       291 L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  370 (850)
                      ++..+|++.. .|..+..+.++..+++.+|++. ..|..... +..|++++...|.++ .+|..++.+.+|+.|++..|+
T Consensus       142 l~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  142 LDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence            5555555554 3555667778888888888887 66666555 678888888888776 778888888888888888888


Q ss_pred             CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcc
Q 003084          371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR  450 (850)
Q Consensus       371 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  450 (850)
                      +. .+|+  |.+|..|+++.++.|++.....+....++++..||+++|++. ..|+.+.-+++|++||+++|.++ ..|.
T Consensus       218 i~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~  292 (565)
T KOG0472|consen  218 IR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY  292 (565)
T ss_pred             cc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence            88 7773  345788888888888887555555557888888888888887 66777777888888888888887 5677


Q ss_pred             cccCCCCCcEEECCCCccccCcchhccCCCC---CCEEe--ccCCcCCCCCCCCcCCCcccEEEccCcccccccCcc---
Q 003084          451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS---LQILD--ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG---  522 (850)
Q Consensus       451 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~--ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---  522 (850)
                      .++++ .|+.|.+.+|.+..+-.+.+ +...   |++|.  +..-.++..     ...+-.         .+..+..   
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii-~~gT~~vLKyLrs~~~~dglS~s-----e~~~e~---------~~t~~~~~~~  356 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREII-SKGTQEVLKYLRSKIKDDGLSQS-----EGGTET---------AMTLPSESFP  356 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHH-cccHHHHHHHHHHhhccCCCCCC-----cccccc---------cCCCCCCccc
Confidence            78887 78888888887753222111 1111   11110  000011000     000000         0011111   


Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCC--CCCEEECcCCcCccCCchhccCCCCCCE-EeCCCCcCCccCCCCcccC
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLS--QLSHLNLAHNNLEGEVPIQLCRLNQLQL-LDLSDNNLHGLIPSCFDNT  599 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~~  599 (850)
                      ......+.+.|++++-+++.+..+.|..-.  -...++++.|++. ..|..+..+..+.+ +.+++|.+ +.+|..++. 
T Consensus       357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~-  433 (565)
T KOG0472|consen  357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQ-  433 (565)
T ss_pred             chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHh-
Confidence            223345677788888777744334443322  2677888888887 56666655555443 34444443 344443333 


Q ss_pred             ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084          600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  679 (850)
                                                                          +++|..|+|++|-+. .+|..++.+..|
T Consensus       434 ----------------------------------------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~L  460 (565)
T KOG0472|consen  434 ----------------------------------------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRL  460 (565)
T ss_pred             ----------------------------------------------------hhcceeeecccchhh-hcchhhhhhhhh
Confidence                                                                448999999999988 789999999999


Q ss_pred             CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCC
Q 003084          680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN  759 (850)
Q Consensus       680 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n  759 (850)
                      +.||+|+|++. .+|..+-.+..|+.+-.++|++....|+.+.+|..|..||+.+|.+.. +|...+.++++..+.+.||
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCC
Confidence            99999999998 789888888889988889999998888889999999999999999995 5555799999999999999


Q ss_pred             CCC
Q 003084          760 PFL  762 (850)
Q Consensus       760 ~~~  762 (850)
                      |+.
T Consensus       539 pfr  541 (565)
T KOG0472|consen  539 PFR  541 (565)
T ss_pred             ccC
Confidence            986

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-34  Score=308.68  Aligned_cols=484  Identities=27%  Similarity=0.365  Sum_probs=286.9

Q ss_pred             ccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCC
Q 003084           83 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL  162 (850)
Q Consensus        83 L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  162 (850)
                      ++.|++  ..|.+-....+.+.+ .-+|+.||+++|.+..    .| ..+..+++|+.|+++.|.+. ..|....++.+|
T Consensus        23 ~~~ln~--~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~----fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l   93 (1081)
T KOG0618|consen   23 LQILNL--RRNSLLSRPLEFVEK-RVKLKSLDLSNNQISS----FP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL   93 (1081)
T ss_pred             HHhhhc--cccccccCchHHhhh-eeeeEEeecccccccc----CC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence            555555  444333222222333 4447777777777654    33 35666777777777777665 445666677777


Q ss_pred             CEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEE
Q 003084          163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS  242 (850)
Q Consensus       163 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  242 (850)
                      +++.|.+|.+. .+|. .+..+.+|+.|++++|.+. ..|.. +..+..                               
T Consensus        94 ~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~-------------------------------  138 (1081)
T KOG0618|consen   94 QYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLV-IEVLTA-------------------------------  138 (1081)
T ss_pred             hhheeccchhh-cCch-hHHhhhcccccccchhccC-CCchh-HHhhhH-------------------------------
Confidence            77777777765 6666 6777777777777777654 12211 111111                               


Q ss_pred             ccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcC
Q 003084          243 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF  322 (850)
Q Consensus       243 ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  322 (850)
                                          ++.+..++|.....+                             +. ..++.+++..|.+
T Consensus       139 --------------------~~~~~~s~N~~~~~l-----------------------------g~-~~ik~~~l~~n~l  168 (1081)
T KOG0618|consen  139 --------------------EEELAASNNEKIQRL-----------------------------GQ-TSIKKLDLRLNVL  168 (1081)
T ss_pred             --------------------HHHHhhhcchhhhhh-----------------------------cc-ccchhhhhhhhhc
Confidence                                111111111000000                             00 0145666777777


Q ss_pred             CcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccc
Q 003084          323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS  402 (850)
Q Consensus       323 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  402 (850)
                      .+.++.+... +..  .|+|.+|.+.   ...+..+.+|+.+....|++. .+..    .-++|+.|+.++|.+....+.
T Consensus       169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~  237 (1081)
T KOG0618|consen  169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH  237 (1081)
T ss_pred             ccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc
Confidence            6666655543 222  5888888875   334566778888888888776 3332    246788888888887733322


Q ss_pred             cccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCC
Q 003084          403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL  482 (850)
Q Consensus       403 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  482 (850)
                        ..-.+|++++++.|+++ .+|.++..|.+|+.++..+|.++ ..|..+...++|+.|.+..|.+. -+|.......+|
T Consensus       238 --p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  238 --PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             --cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence              22356788888888877 45577778888888888888875 56666777777888888888776 345555667778


Q ss_pred             CEEeccCCcCCCCCCCCcC---CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEEC
Q 003084          483 QILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNL  559 (850)
Q Consensus       483 ~~L~ls~n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  559 (850)
                      ++|++..|++.. +|..+.   ..+++.+..+.|.+.. .+...=...+.|+.|++.+|.+++..-..+.+.++|+.|+|
T Consensus       313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            888888887763 333222   2235566666665532 22212233456667777777776655555666677777777


Q ss_pred             cCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhc
Q 003084          560 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT  639 (850)
Q Consensus       560 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (850)
                      ++|++.......+.++..|++|+||+|+++.++ .+...                                         
T Consensus       391 syNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~-----------------------------------------  428 (1081)
T KOG0618|consen  391 SYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVAN-----------------------------------------  428 (1081)
T ss_pred             cccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHh-----------------------------------------
Confidence            777776555555666677777777777665433 33322                                         


Q ss_pred             cccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEECcCCcCcccCC
Q 003084          640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP  718 (850)
Q Consensus       640 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p  718 (850)
                                  ++.|++|..-+|++. ..| .+..++.|+.+|+|.|+++.. +|.... -++|++||+++|.-....-
T Consensus       429 ------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~  493 (1081)
T KOG0618|consen  429 ------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDH  493 (1081)
T ss_pred             ------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccch
Confidence                        225666666666666 455 566677777777777766642 222222 2667777777776433444


Q ss_pred             hhhhcCCCCCEEEccCC
Q 003084          719 RQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       719 ~~l~~l~~L~~L~l~~N  735 (850)
                      ..|..+.++...++.-|
T Consensus       494 ~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  494 KTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhHHhhhhhheecccC
Confidence            45555555555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-34  Score=309.76  Aligned_cols=442  Identities=29%  Similarity=0.335  Sum_probs=246.2

Q ss_pred             CcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCC
Q 003084           58 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH  137 (850)
Q Consensus        58 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~  137 (850)
                      +++|+++.|-+.. .|.+...+.-+|+.|++  +++++. .+|..+.. +.+|+.|+++.|.|..    +| ....++.+
T Consensus        23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~l--snn~~~-~fp~~it~-l~~L~~ln~s~n~i~~----vp-~s~~~~~~   92 (1081)
T KOG0618|consen   23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDL--SNNQIS-SFPIQITL-LSHLRQLNLSRNYIRS----VP-SSCSNMRN   92 (1081)
T ss_pred             HHhhhcccccccc-CchHHhhheeeeEEeec--cccccc-cCCchhhh-HHHHhhcccchhhHhh----Cc-hhhhhhhc
Confidence            5666666655442 22223444455777777  555543 44555555 7788888888888865    44 47788999


Q ss_pred             CCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEc
Q 003084          138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA  217 (850)
Q Consensus       138 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l  217 (850)
                      |+++.|..|++. ..|..+..+.+|++||+++|.+. .+|. .+..++.++.+..++|.....     ++... .+.+++
T Consensus        93 l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l  163 (1081)
T KOG0618|consen   93 LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDL  163 (1081)
T ss_pred             chhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhh
Confidence            999999998877 77889999999999999999996 8888 899999999999999822211     11111 444444


Q ss_pred             cCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCc
Q 003084          218 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS  297 (850)
Q Consensus       218 ~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  297 (850)
                      ..|.+...                           ++..+..+..  .+++++|.+.. . +  ..++..|+.+....|.
T Consensus       164 ~~n~l~~~---------------------------~~~~i~~l~~--~ldLr~N~~~~-~-d--ls~~~~l~~l~c~rn~  210 (1081)
T KOG0618|consen  164 RLNVLGGS---------------------------FLIDIYNLTH--QLDLRYNEMEV-L-D--LSNLANLEVLHCERNQ  210 (1081)
T ss_pred             hhhhcccc---------------------------hhcchhhhhe--eeecccchhhh-h-h--hhhccchhhhhhhhcc
Confidence            44333211                           1111111111  24444444431 0 0  1233444444444433


Q ss_pred             CcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcch
Q 003084          298 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD  377 (850)
Q Consensus       298 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  377 (850)
                      +....    ..-+                         +++.|+.++|.++...+.  ..-.+|+++++++|+++ .+|+
T Consensus       211 ls~l~----~~g~-------------------------~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~  258 (1081)
T KOG0618|consen  211 LSELE----ISGP-------------------------SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPE  258 (1081)
T ss_pred             cceEE----ecCc-------------------------chheeeeccCcceeeccc--cccccceeeecchhhhh-cchH
Confidence            33211    0123                         444444444444421111  11234455555555555 4452


Q ss_pred             HHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCC
Q 003084          378 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG  457 (850)
Q Consensus       378 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  457 (850)
                      .+ ..|.+|+.++..+|.+. ..|..+....+|+.|.+..|.+. .+|....+.++|++|++..|++....+..+.....
T Consensus       259 wi-~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  259 WI-GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             HH-HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            22 23555555555555553 44444445555555555555554 33334444555555555555555322222222222


Q ss_pred             -CcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCC-CCCcCCCcccEEEccCcccccccCccccCCCCCCcEEEC
Q 003084          458 -LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL  535 (850)
Q Consensus       458 -L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  535 (850)
                       ++.+..+.|++.......=...+.|+.|.+.+|.++... |......+|+.|+|++|++ +.+|...+.++..|++|+|
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhc
Confidence             444444444444222111112344555555555554332 2222244555555555555 2566667778888888888


Q ss_pred             cCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCc
Q 003084          536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG  590 (850)
Q Consensus       536 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  590 (850)
                      |+|+++ .+|..+..++.|++|...+|++. ..| .+..+++|+.+|+|.|.++.
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            888887 56677888888888888888887 555 67778888888888887753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.6e-32  Score=280.39  Aligned_cols=363  Identities=26%  Similarity=0.355  Sum_probs=176.1

Q ss_pred             EEccCCcCc-ccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084          340 FNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN  418 (850)
Q Consensus       340 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  418 (850)
                      +++++|.++ +..|.....|++++.|.|...++. .+|+.+.. +.+|++|.+++|++. .+...+..++.|+.+.+.+|
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence            333334333 233444444444444444444444 44444432 444444444444444 22333444445555555544


Q ss_pred             cCcc-cCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084          419 HFVG-EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP  497 (850)
Q Consensus       419 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  497 (850)
                      ++.. -+|..+.++..|+.||+++|++. ..|..+...+++-.|++++|+|..+....|.+++.|-.||+|+|++....|
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP  167 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP  167 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence            4432 23334444555555555555554 444445445555555555555544433444445555555555555544444


Q ss_pred             CCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCC
Q 003084          498 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN  576 (850)
Q Consensus       498 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  576 (850)
                      ..-.+..|+.|.+++|.+. .+.-..+..+++|+.|.+++.+-+ ..+|..+.++.+|..+|++.|.+. ..|+.+..++
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~  245 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR  245 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence            4444445555555555442 111113344555555566554332 234555556666666666666665 5566666666


Q ss_pred             CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084          577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  656 (850)
Q Consensus       577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  656 (850)
                      +|+.|+||+|+|+..... ..                                                     ...+|+
T Consensus       246 ~LrrLNLS~N~iteL~~~-~~-----------------------------------------------------~W~~lE  271 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITELNMT-EG-----------------------------------------------------EWENLE  271 (1255)
T ss_pred             hhheeccCcCceeeeecc-HH-----------------------------------------------------HHhhhh
Confidence            666666666665432110 00                                                     012455


Q ss_pred             eEEccCCccccCCCccccCCCCCCEEECcCCcCCc-cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      +|++|+|+++ ..|.++..++.|+.|.+.+|+++- -+|.+++.+.+|+.+..++|.+. ..|+++..+..|+.|.++.|
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence            5555555555 455555555555555555555441 24555555555555555555554 45555555555555555555


Q ss_pred             cCcCCCCCCccccCCCCccccCCCCCCCCC
Q 003084          736 NLSGKIPEWTAQFATFNKSSYDGNPFLCGL  765 (850)
Q Consensus       736 ~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~  765 (850)
                      ++. ..|+++.-++.+..+++..||.+--+
T Consensus       350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cee-echhhhhhcCCcceeeccCCcCccCC
Confidence            554 34444444444555555555544433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.6e-32  Score=278.53  Aligned_cols=384  Identities=27%  Similarity=0.366  Sum_probs=232.6

Q ss_pred             CCccEEEccCCcccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcE
Q 003084          261 HELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY  339 (850)
Q Consensus       261 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  339 (850)
                      +-.+-+|+++|.+.| .+|..+ ..+++++.|.|....+.. +|..++.+.+|++|.+++|++. .+..++.. +|.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence            334556666666663 455544 455666666665555443 3455555566666666666554 33333322 555566


Q ss_pred             EEccCCcCc-ccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084          340 FNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN  418 (850)
Q Consensus       340 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  418 (850)
                      +.+.+|++. ..+|..+..+..|+.||||+|+++ ++|..+-. -.++-.|++++|+|..+....|.++..|-.|||++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            666555553 234555555555666666666655 55555432 445555555555555444444455555555555555


Q ss_pred             cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc-cCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084          419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE-GPIPVEFCRLDSLQILDISDNNISGSLP  497 (850)
Q Consensus       419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~  497 (850)
                      ++. .+|..+..+..|++|++++|++...--..+..+++|+.|.+++.+-+ .-+|..+..+.+|..+|+|.|++.    
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----  235 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----  235 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence            554 33444555555555555555554322233444445555555544322 123444445555555555555443    


Q ss_pred             CCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCC
Q 003084          498 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ  577 (850)
Q Consensus       498 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  577 (850)
                                          .+|+ .+..+++|+.|+||+|+|+. +....+.-.+|++|+++.|+++ ..|.+++.++.
T Consensus       236 --------------------~vPe-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k  292 (1255)
T KOG0444|consen  236 --------------------IVPE-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK  292 (1255)
T ss_pred             --------------------cchH-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence                                3444 67778889999999998884 3344556678889999999988 78888888999


Q ss_pred             CCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084          578 LQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  656 (850)
Q Consensus       578 L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  656 (850)
                      |+.|.+.+|+++-. +|..++.                                                     +..|+
T Consensus       293 L~kLy~n~NkL~FeGiPSGIGK-----------------------------------------------------L~~Le  319 (1255)
T KOG0444|consen  293 LTKLYANNNKLTFEGIPSGIGK-----------------------------------------------------LIQLE  319 (1255)
T ss_pred             HHHHHhccCcccccCCccchhh-----------------------------------------------------hhhhH
Confidence            99999988887521 3333332                                                     33678


Q ss_pred             eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      ++..++|.+. .+|+.+..+..|+.|.|++|++. ..|+++.-++.|+.||+..|+-..-.|.--..-++|+.-++.
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            8888888886 78888888888888999888887 678888888888889988887764333221122455555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=4.6e-27  Score=230.06  Aligned_cols=251  Identities=23%  Similarity=0.234  Sum_probs=142.7

Q ss_pred             CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccC-CcCCCCcchHHhhcCCCCCEE
Q 003084          311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNLEFL  389 (850)
Q Consensus       311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L  389 (850)
                      ....++|..|.|+ .+|...|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|.++..++.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            4456666677776 67777776677777777777777766777777777666665555 6666 6777777777777777


Q ss_pred             EccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCC------------CCCcccccCCCC
Q 003084          390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS------------GKIPRWLGNLKG  457 (850)
Q Consensus       390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~  457 (850)
                      .+.-|++.....+.|..++++..|.+.+|.+..+-..+|..+..++.+.+..|.+.            ...|..++....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            77777776666667777777777777777766444446666667777766666521            111122222221


Q ss_pred             CcEEECCCCcccc-------------------------C-cchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEc
Q 003084          458 LQHIVMPKNHLEG-------------------------P-IPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHL  510 (850)
Q Consensus       458 L~~L~l~~n~l~~-------------------------~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l  510 (850)
                      .....+.+.++..                         + ....|..+++|++|++++|+++++.+.+|. ...+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            1111122222221                         1 223455666666666666666655555444 334555555


Q ss_pred             cCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcC
Q 003084          511 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL  564 (850)
Q Consensus       511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  564 (850)
                      ..|++. .+..+.|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|++
T Consensus       306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            555552 33333555555555555555555555555555555555555544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.7e-26  Score=224.71  Aligned_cols=282  Identities=21%  Similarity=0.235  Sum_probs=216.2

Q ss_pred             EEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084          314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  393 (850)
Q Consensus       314 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  393 (850)
                      ..+-++-.++ ++|..+   .+..+.++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.+++++..|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            3455555565 777765   358899999999999888889999999999999999999 88888889999988776666


Q ss_pred             -CccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc---
Q 003084          394 -NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE---  469 (850)
Q Consensus       394 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  469 (850)
                       |+|+....+.|.++..++.|.+.-|++.....+.|..++++..|.+.+|.+..+....|..+.+++.+.+..|.+.   
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             8999888889999999999999999999888889999999999999999998665568889999999998888732   


Q ss_pred             ---------cCcchhccCCCCCCEEeccCCcCCCCCCCCcCCC--cccEEEccCcccccccCccccCCCCCCcEEECcCC
Q 003084          470 ---------GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN  538 (850)
Q Consensus       470 ---------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  538 (850)
                               ...|..++.........+.+.++....+..|...  ++..-..+.+...+..|...|..+++|++|+|++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                     1222333333333333344444433323223222  22222233344445666667888899999999999


Q ss_pred             cCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCc
Q 003084          539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT  600 (850)
Q Consensus       539 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  600 (850)
                      +++++.+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            99888888899999999999999988877777888888999999999999888888887654

>PLN03210 Resistant to P

Probab=99.90  E-value=2e-22  Score=245.44  Aligned_cols=339  Identities=22%  Similarity=0.259  Sum_probs=184.9

Q ss_pred             cCCCCCccEEEccCCc------CCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHH
Q 003084          306 IHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHL  379 (850)
Q Consensus       306 ~~~~~~L~~L~Ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  379 (850)
                      |..+++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            4555666666554432      112334443333345666666666554 445444 3456666666666655 454443


Q ss_pred             hhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCc
Q 003084          380 AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ  459 (850)
Q Consensus       380 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  459 (850)
                       ..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus       631 -~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        631 -HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             -ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence             2356666666665543333332 5555666666666655544555556666666666666654333444433 456666


Q ss_pred             EEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc------ccCccccCCCCCCcEE
Q 003084          460 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG------QLKEGTFFNCSSLVTL  533 (850)
Q Consensus       460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L  533 (850)
                      .|++++|......|..   .++|+.|++++|.+. .+|....+++|+.|.+.++....      .++...+..+++|+.|
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            6666665443333321   345566666666654 34444445555555555432110      0011112234566777


Q ss_pred             ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084          534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK  613 (850)
Q Consensus       534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  613 (850)
                      ++++|.....+|..++++++|+.|++++|...+.+|... ++++|+.|++++|......|..                  
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------  844 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------  844 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------
Confidence            777766555666666777777777777665443455444 5667777777766432222111                  


Q ss_pred             CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC
Q 003084          614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI  693 (850)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  693 (850)
                                                            .++|++|+|++|.++ .+|..+..+++|+.|+|++|+-...+
T Consensus       845 --------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        845 --------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             --------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence                                                  125677777777776 46666777777777777764433345


Q ss_pred             cccCCCCCCCCEEECcCCc
Q 003084          694 PLTFSNLRHIESLDLSYNK  712 (850)
Q Consensus       694 ~~~~~~l~~L~~L~Ls~N~  712 (850)
                      |..+..+++|+.+++++|.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcccccccCCCeeecCCCc
Confidence            6666667777777777664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=4.2e-22  Score=242.73  Aligned_cols=342  Identities=21%  Similarity=0.258  Sum_probs=271.7

Q ss_pred             CChhhhhcCCCCcEEEccCCcC------cccCcccccCCC-CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc
Q 003084          326 IPVEIGDILPSLVYFNISMNAL------DGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG  398 (850)
Q Consensus       326 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  398 (850)
                      +....|..+++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|..+  ...+|+.|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            4556677799999999976542      234566676664 6999999999998 888876  3789999999999987 


Q ss_pred             cccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccC
Q 003084          399 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR  478 (850)
Q Consensus       399 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  478 (850)
                      .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            5667788999999999999876556664 7889999999999998777889999999999999999986555666655 7


Q ss_pred             CCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC-------CCcCccccCC
Q 003084          479 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGL  551 (850)
Q Consensus       479 l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l  551 (850)
                      +++|+.|++++|.....+|..  ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++...       ...+..+..+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence            899999999999766566543  468999999999885 4554 22 5788888988874422       1222233446


Q ss_pred             CCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhh
Q 003084          552 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK  631 (850)
Q Consensus       552 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (850)
                      ++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .                                 
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------  823 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------  823 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence            789999999998887899999999999999999986544444332 1                                 


Q ss_pred             hhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084          632 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  711 (850)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  711 (850)
                                          +++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus       824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                348999999998765556643   468999999999998 67889999999999999995


Q ss_pred             cCcccCChhhhcCCCCCEEEccCCc
Q 003084          712 KLSGKIPRQLVDLNTLAIFIVAYNN  736 (850)
Q Consensus       712 ~l~~~~p~~l~~l~~L~~L~l~~N~  736 (850)
                      +-...+|..+..+++|+.+++++|.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCc
Confidence            5444688888899999999999984

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.5e-20  Score=209.52  Aligned_cols=63  Identities=27%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL  721 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  721 (850)
                      +|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            34445555555542 3322   123444555555554 344444445555555555555554444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.7e-19  Score=202.95  Aligned_cols=266  Identities=27%  Similarity=0.320  Sum_probs=169.2

Q ss_pred             CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEE
Q 003084          311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  390 (850)
Q Consensus       311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  390 (850)
                      .-..|+++.+.++ .+|..+.   ++|+.|++.+|.++ .+|.   ..++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3457788888887 6776553   36778888888777 3453   2467777777777777 56642    35677777


Q ss_pred             ccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 003084          391 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG  470 (850)
Q Consensus       391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  470 (850)
                      +++|.+.. +|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ...|+.|++++|.+++
T Consensus       269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            77776653 2222   2456666666666652 332   12456666666666653 2321   1245555555555543


Q ss_pred             CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084          471 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  550 (850)
Q Consensus       471 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  550 (850)
                       +|..   ..+|+.|++++|++++                        +|.    ..++|+.|++++|+++. +|..   
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~------------------------LP~----lp~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLAS------------------------LPT----LPSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             -cccc---ccccceEecCCCccCC------------------------CCC----CCcccceehhhcccccc-Cccc---
Confidence             2211   1245555555555442                        222    12456777788887774 4432   


Q ss_pred             CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhh
Q 003084          551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK  630 (850)
Q Consensus       551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (850)
                      ..+|+.|++++|++++ +|..   .++|+.|++++|+++++ |..                                   
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l-----------------------------------  420 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML-----------------------------------  420 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc-----------------------------------
Confidence            3568888888888874 4432   36788999999988754 221                                   


Q ss_pred             hhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCC
Q 003084          631 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN  699 (850)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  699 (850)
                                           +..|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+..
T Consensus       421 ---------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 ---------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ---------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence                                 125778999999998 68889999999999999999999887776643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.7e-17  Score=188.47  Aligned_cols=182  Identities=29%  Similarity=0.434  Sum_probs=99.1

Q ss_pred             CCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEEC
Q 003084          384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM  463 (850)
Q Consensus       384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  463 (850)
                      .+...|+++++.++. +|..+.  +.|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            346677777777763 344332  46777777777777 3444333  46777777777776 3454443  46777777


Q ss_pred             CCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCC
Q 003084          464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS  543 (850)
Q Consensus       464 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  543 (850)
                      ++|.+. .+|..+.  .+|+.|++++|++.. +|..+ +.+|+.|++++|.+++ +|. .+  .++|+.|++++|.++. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt~-LP~-~l--p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL-PEELRYLSVYDNSIRT-LPA-HL--PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc-CCCCcEEECCCCcccc-Ccc-cc--hhhHHHHHhcCCcccc-
Confidence            777776 3444442  367777777777663 33322 2356666666665542 222 11  1345555555555553 


Q ss_pred             cCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084          544 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  589 (850)
Q Consensus       544 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  589 (850)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            22222  2455555555555553 333332  45555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=7.8e-18  Score=191.15  Aligned_cols=204  Identities=27%  Similarity=0.396  Sum_probs=114.1

Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084          336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  415 (850)
Q Consensus       336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  415 (850)
                      +...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..++   .+|++|++++|.+.. +|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence            4566777777666 3454432  45777777777777 6666543   466677777666653 333332  34566666


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  495 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  495 (850)
                      ++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+                   
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l-------------------  302 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL-------------------  302 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc-------------------
Confidence            666655 3343332  34555555555555 2333332  345555555555442 22211                   


Q ss_pred             CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084          496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  575 (850)
Q Consensus       496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  575 (850)
                            +.+|+.|++++|.++. +|. .  ..++|+.|++++|.+++ +|..+  .++|+.|++++|+++ .+|..+.  
T Consensus       303 ------p~sL~~L~Ls~N~Lt~-LP~-~--l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        303 ------PSGITHLNVQSNSLTA-LPE-T--LPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             ------hhhHHHHHhcCCcccc-CCc-c--ccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--
Confidence                  2244555555555432 222 1  12567777888887774 44443  267888888888877 4554442  


Q ss_pred             CCCCEEeCCCCcCCcc
Q 003084          576 NQLQLLDLSDNNLHGL  591 (850)
Q Consensus       576 ~~L~~L~Ls~n~l~~~  591 (850)
                      ++|+.|++++|+++.+
T Consensus       367 ~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        367 PTITTLDVSRNALTNL  382 (754)
T ss_pred             CCcCEEECCCCcCCCC
Confidence            5788888888877643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.7e-19  Score=187.13  Aligned_cols=83  Identities=24%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             cCCeEEccCCccccCCCcccc-----CCCCCCEEECcCCcCCc----cCcccCCCCCCCCEEECcCCcCccc----CChh
Q 003084          654 LLAGLDLSCNKLVGHIPPQIG-----NLTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGK----IPRQ  720 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~  720 (850)
                      +|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            455555555555432111111     12456666666665541    1223344445566666666666533    2233


Q ss_pred             hhcC-CCCCEEEccCCc
Q 003084          721 LVDL-NTLAIFIVAYNN  736 (850)
Q Consensus       721 l~~l-~~L~~L~l~~N~  736 (850)
                      +... +.|+.+++.+|+
T Consensus       302 ~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         302 LLEPGNELESLWVKDDS  318 (319)
T ss_pred             HhhcCCchhhcccCCCC
Confidence            3333 455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2e-18  Score=183.43  Aligned_cols=218  Identities=23%  Similarity=0.294  Sum_probs=126.8

Q ss_pred             CCCCCCCcEEECcCCCCCCCCcccccCCCC---CcEEECCCCccccC----cchhccCC-CCCCEEeccCCcCCCCCCCC
Q 003084          428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIVMPKNHLEGP----IPVEFCRL-DSLQILDISDNNISGSLPSC  499 (850)
Q Consensus       428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~~~~  499 (850)
                      +..+++|+.|++++|.+.+..+..+..+..   |++|++++|++.+.    ....+..+ ++|+.|++++|.+++...  
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--  154 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC--  154 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--
Confidence            444556666666666555433333333333   66666666655421    12233344 556666666665542110  


Q ss_pred             cCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCC----cCccccCCCCCCEEECcCCcCccCC----chh
Q 003084          500 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEV----PIQ  571 (850)
Q Consensus       500 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~  571 (850)
                                       ..+.. .+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+..    +..
T Consensus       155 -----------------~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         155 -----------------EALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             -----------------HHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence                             01111 455667788888888777642    2233445568888888888776332    334


Q ss_pred             ccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhh
Q 003084          572 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV  651 (850)
Q Consensus       572 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (850)
                      +..+++|++|++++|++++.....+...-                                              .  ..
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~----------------------------------------------~--~~  248 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASAL----------------------------------------------L--SP  248 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHH----------------------------------------------h--cc
Confidence            56678888888888877642111110000                                              0  00


Q ss_pred             hccCCeEEccCCcccc----CCCccccCCCCCCEEECcCCcCCcc----CcccCCCC-CCCCEEECcCCcC
Q 003084          652 LSLLAGLDLSCNKLVG----HIPPQIGNLTRIQTLNLSHNNLTGT----IPLTFSNL-RHIESLDLSYNKL  713 (850)
Q Consensus       652 l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l  713 (850)
                      .+.|++|++++|.++.    .++..+..+++|+.+++++|.++..    ....+... +.|+++++.+|++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2478899999998862    2334566678899999999999854    34444445 7899999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-17  Score=144.79  Aligned_cols=160  Identities=31%  Similarity=0.490  Sum_probs=100.4

Q ss_pred             CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccccc
Q 003084          526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY  605 (850)
Q Consensus       526 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  605 (850)
                      ++..++.|.+++|+++ ..|..++.+.+|+.|++.+|++. ..|..+..+++|+.|+++-|++. ..|..|+..      
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~------  101 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF------  101 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC------
Confidence            3445555566666665 33444556666666666666665 45555666666666666666553 334444432      


Q ss_pred             CCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc-CCCccccCCCCCCEEEC
Q 003084          606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNL  684 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L  684 (850)
                                                                     +.|+.|||.+|++.+ ..|..|..++.|+-|+|
T Consensus       102 -----------------------------------------------p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen  102 -----------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             -----------------------------------------------chhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence                                                           256666666665543 35666667777777777


Q ss_pred             cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       685 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ++|.+. .+|..++++++|+.|.+++|.+. .+|..+..++.|+.|.+.+|+++..+|+
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            777776 66667777777777777777776 6677777777777777777777755555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4.8e-17  Score=141.42  Aligned_cols=170  Identities=31%  Similarity=0.508  Sum_probs=138.4

Q ss_pred             CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084          496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  575 (850)
Q Consensus       496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  575 (850)
                      ++..+....++.|.+++|.++ .+|. .+..+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            344445556666667777665 3444 5778899999999999998 66788999999999999999998 889999999


Q ss_pred             CCCCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhcc
Q 003084          576 NQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL  654 (850)
Q Consensus       576 ~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  654 (850)
                      |.|+.||+.+|++... .|+.|-.                                                     +..
T Consensus       102 p~levldltynnl~e~~lpgnff~-----------------------------------------------------m~t  128 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFY-----------------------------------------------------MTT  128 (264)
T ss_pred             chhhhhhccccccccccCCcchhH-----------------------------------------------------HHH
Confidence            9999999999987642 3333322                                                     337


Q ss_pred             CCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084          655 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN  725 (850)
Q Consensus       655 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  725 (850)
                      |+.|+|+.|.+. .+|...+.+++|+.|.+.+|.+. ..|..++.++.|+.|.+.+|+++ .+|..+..+.
T Consensus       129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            888999999998 78899999999999999999998 78999999999999999999999 6676666543

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=4e-14  Score=160.96  Aligned_cols=118  Identities=36%  Similarity=0.628  Sum_probs=106.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|||++|++++.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCCCccc-cCCCCccccCCCCCCCCCCCC-CCC
Q 003084          734 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPLP-ICR  771 (850)
Q Consensus       734 ~N~l~~~~p~~~~~-~~~~~~~~~~~n~~~c~~~l~-~c~  771 (850)
                      +|+++|.+|..+.. ........+.+|+.+|++|.. .|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999986644 234556789999999987643 564

>PLN03150 hypothetical protein; Provisional

Probab=99.21  E-value=5.6e-11  Score=135.41  Aligned_cols=114  Identities=32%  Similarity=0.515  Sum_probs=101.1

Q ss_pred             CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084          577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  656 (850)
Q Consensus       577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  656 (850)
                      .++.|+|++|.+.+.+|..+..+.                                                     +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            367889999998888887766544                                                     899


Q ss_pred             eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCC
Q 003084          657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYN  735 (850)
Q Consensus       657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N  735 (850)
                      .|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+ ..+..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 56788999999


Q ss_pred             cCcCCCCC
Q 003084          736 NLSGKIPE  743 (850)
Q Consensus       736 ~l~~~~p~  743 (850)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            87665554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.2e-11  Score=124.61  Aligned_cols=216  Identities=24%  Similarity=0.242  Sum_probs=140.6

Q ss_pred             CCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccch-hhhhccCCCCcEEeCCCCcCCCcccCCcCCCCC
Q 003084            3 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK   81 (850)
Q Consensus         3 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~   81 (850)
                      ++..|++..|.++.+..... .+....|++++.||||.|-+..-.+ ..+..-+|+|+.|+|+.|++..-.....-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            46677888887776664420 1356678888888888886553211 133333888888888888875333322234667


Q ss_pred             cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcccccc-CccccCCC
Q 003084           82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCLANTT  160 (850)
Q Consensus        82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~  160 (850)
                      +|+.|.|  +.|.++..-...+...+|+|+.|++.+|....    +.......+..|++|||++|++.... -...+.++
T Consensus       198 ~lK~L~l--~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  198 HLKQLVL--NSCGLSWKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhheEEe--ccCCCCHHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence            8888888  77776655444444458888888888885322    33334455778888888888776432 13456788


Q ss_pred             CCCEEECCCCcCcCCCCcccc------cCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCcccccc
Q 003084          161 SLRILDVSFNQLTGSISSSPL------VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI  226 (850)
Q Consensus       161 ~L~~L~Ls~n~i~~~i~~~~~------~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  226 (850)
                      .|+.|+++.+.+. ++.....      ..+++|+.|+++.|++..--....+..+++|+.+.+..|.+....
T Consensus       272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             chhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            8888888888876 3322122      456788888888888754344455666677777777777665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=2.5e-12  Score=133.36  Aligned_cols=176  Identities=32%  Similarity=0.460  Sum_probs=138.0

Q ss_pred             CcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEe
Q 003084          503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD  582 (850)
Q Consensus       503 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  582 (850)
                      .--...+++.|++. .+|. .+..+..|+.+.+..|.+. .+|..+.++..|..|+|+.|++. ..|..++.++ |+.|-
T Consensus        75 tdt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            33456677777774 5555 5666777888888888877 66777888888888888888887 5666666554 77888


Q ss_pred             CCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084          583 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC  662 (850)
Q Consensus       583 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  662 (850)
                      +++|+++..++ ..+.                                                     ++.|..||.+.
T Consensus       150 ~sNNkl~~lp~-~ig~-----------------------------------------------------~~tl~~ld~s~  175 (722)
T KOG0532|consen  150 VSNNKLTSLPE-EIGL-----------------------------------------------------LPTLAHLDVSK  175 (722)
T ss_pred             EecCccccCCc-cccc-----------------------------------------------------chhHHHhhhhh
Confidence            88888764332 2222                                                     34789999999


Q ss_pred             CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       663 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      |.+. .+|..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .+|-.|.+|+.|++|.|.+|+|..++
T Consensus       176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            9998 67889999999999999999998 556666654 5889999999999 89999999999999999999998543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=3.7e-12  Score=132.07  Aligned_cols=196  Identities=27%  Similarity=0.406  Sum_probs=158.5

Q ss_pred             CCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEE
Q 003084          478 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL  557 (850)
Q Consensus       478 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  557 (850)
                      .+.--...|++.|++.........+..|+.+.+..|.+. .++. ...++..|+.|||+.|+++ ..|..+..|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~-~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPE-AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecch-hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            344556789999999854444444778999999999884 5666 7889999999999999998 6677676665 9999


Q ss_pred             ECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhh
Q 003084          558 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  637 (850)
Q Consensus       558 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                      .+++|+++ .+|..++..+.|..||.+.|.+...++. +..                                       
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~---------------------------------------  187 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGY---------------------------------------  187 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHH-hhh---------------------------------------
Confidence            99999999 7788888999999999999998755432 222                                       


Q ss_pred             hccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC
Q 003084          638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI  717 (850)
Q Consensus       638 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  717 (850)
                                    +.+|+.|.++.|++. ..|+.+..| .|..||+|+|+++ .+|-.|..|+.|++|-|.+|+++ ..
T Consensus       188 --------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP  249 (722)
T KOG0532|consen  188 --------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP  249 (722)
T ss_pred             --------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence                          448999999999998 567778755 5999999999999 88999999999999999999998 66


Q ss_pred             Chhhh---cCCCCCEEEccCCc
Q 003084          718 PRQLV---DLNTLAIFIVAYNN  736 (850)
Q Consensus       718 p~~l~---~l~~L~~L~l~~N~  736 (850)
                      |..+.   ...-.++|+..-+.
T Consensus       250 PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  250 PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hHHHHhccceeeeeeecchhcc
Confidence            66543   34556788887774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.6e-11  Score=117.04  Aligned_cols=87  Identities=28%  Similarity=0.276  Sum_probs=56.3

Q ss_pred             ccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCC-hhhhcCCCCCEEE
Q 003084          653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP-RQLVDLNTLAIFI  731 (850)
Q Consensus       653 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  731 (850)
                      ++|+.||||+|.++.. ...-..+-+.+.|.|++|.|...  .+++.+-+|..||+++|+|..... ..++++|-|+.+.
T Consensus       329 ~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            3666677777766632 22223455677777777777633  466777777777888777764222 4567778888888


Q ss_pred             ccCCcCcCCCC
Q 003084          732 VAYNNLSGKIP  742 (850)
Q Consensus       732 l~~N~l~~~~p  742 (850)
                      +.+|++.+.+.
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            88888875443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.9e-10  Score=125.63  Aligned_cols=199  Identities=35%  Similarity=0.489  Sum_probs=111.6

Q ss_pred             EEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCc
Q 003084          460 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY  539 (850)
Q Consensus       460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  539 (850)
                      .+....+.+... .......+.++.|++.+|.+....+......                        ++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~  151 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK  151 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence            456666655322 2223344566666666666653332222221                        256666666666


Q ss_pred             CCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccc
Q 003084          540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF  619 (850)
Q Consensus       540 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (850)
                      +. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|++..+++.. .                      
T Consensus       152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~----------------------  206 (394)
T COG4886         152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E----------------------  206 (394)
T ss_pred             hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h----------------------
Confidence            65 33344566666666666666666 33433335566666666666665443221 0                      


Q ss_pred             cccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCC
Q 003084          620 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN  699 (850)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  699 (850)
                                                     .+..|++|++++|.+. ..+..+..++++..+.+.+|++. ..+..++.
T Consensus       207 -------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         207 -------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             -------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence                                           0124666666666433 34555666666666666666665 23556666


Q ss_pred             CCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          700 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       700 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      +++++.|++++|.++...+  +..+.+++.|++++|.+...+|.
T Consensus       254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            6667777777777663333  66667777777777766655554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=4.7e-10  Score=122.61  Aligned_cols=102  Identities=33%  Similarity=0.487  Sum_probs=48.4

Q ss_pred             EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCC-CCcEEECcCCCCCCCCcccccCCCCCcEEECCCC
Q 003084          388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN  466 (850)
Q Consensus       388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  466 (850)
                      .++...+.+... ...+..++.++.|++.+|.++. ++....... +|+.|++++|.+. .+|..++.++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            455555554311 1223334555666666665552 233333332 5566666665555 33334455555555555555


Q ss_pred             ccccCcchhccCCCCCCEEeccCCcCC
Q 003084          467 HLEGPIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       467 ~l~~~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      ++.. .+......+.|+.|++++|++.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc
Confidence            5542 2222224445555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=5.8e-11  Score=113.37  Aligned_cols=186  Identities=22%  Similarity=0.288  Sum_probs=117.4

Q ss_pred             ccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcc---cC-------------------CcCCCCC
Q 003084           24 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL---SG-------------------QGFPHFK   81 (850)
Q Consensus        24 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~---~~-------------------~~~~~l~   81 (850)
                      +-.++-|++|+.+.+|.+.-..  +.++...-|.|+++......+....   |.                   .....++
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             ccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            4456678888888888874222  2222222477777777665443110   00                   1234567


Q ss_pred             cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCC
Q 003084           82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS  161 (850)
Q Consensus        82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  161 (850)
                      .|++|||  +.|.++. +.++..- .|+++.|++|+|.|..    +  +.+..+++|+.||||+|.++.. ..+=.++-+
T Consensus       285 ~LtelDL--S~N~I~~-iDESvKL-~Pkir~L~lS~N~i~~----v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN  353 (490)
T KOG1259|consen  285 ELTELDL--SGNLITQ-IDESVKL-APKLRRLILSQNRIRT----V--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN  353 (490)
T ss_pred             hhhhccc--cccchhh-hhhhhhh-ccceeEEeccccceee----e--hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence            7788888  5555432 2233333 6778888888887754    2  3466777888888888776632 333446677


Q ss_pred             CCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccc
Q 003084          162 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE  225 (850)
Q Consensus       162 L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  225 (850)
                      .+.|.|++|.+. .+..  ++.+-+|..||+++|++........+++++-|+.+.+.+|.+...
T Consensus       354 IKtL~La~N~iE-~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  354 IKTLKLAQNKIE-TLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             EeeeehhhhhHh-hhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            777888888775 4443  677777888888888777555556677777778777777776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3e-11  Score=118.42  Aligned_cols=242  Identities=24%  Similarity=0.275  Sum_probs=109.5

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC---ccccccC-------ccccCCCCCCEEECCCCcCcCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN---DLRGSLP-------WCLANTTSLRILDVSFNQLTGSI  176 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n---~l~~~~~-------~~~~~l~~L~~L~Ls~n~i~~~i  176 (850)
                      ...++++++|+|.+...+.......+.+.++|+..+++.-   +....+|       .++..+++|++||||.|-+...-
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4556666666666554333333334555556666666542   1111222       23445567777777776653221


Q ss_pred             Cc---ccccCCCCCCeEECcCCcCcCCC------------CcccccCCCCccEEEccCCccccccccccCCCCccceeEE
Q 003084          177 SS---SPLVHLTSIEELRLSNNHFRIPV------------SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL  241 (850)
Q Consensus       177 ~~---~~~~~l~~L~~L~L~~n~~~~~~------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  241 (850)
                      +.   .-+.++..|++|.|.+|.+.-..            .....+.-++|+.+..++|++.......            
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~------------  176 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA------------  176 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH------------
Confidence            11   02345666777777777654110            0111233345555555555443221111            


Q ss_pred             EccCCCCCCcccCccccCCCCccEEEccCCcccccCch---hhhhcCCCCcEEEccCCcCcCcC----ccCcCCCCCccE
Q 003084          242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN---WLLENNTKLEFLYLVNDSLAGPF----RLPIHSHKRLRF  314 (850)
Q Consensus       242 ~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~  314 (850)
                                 +...++..+.|+.+.+..|.+......   .-+..|+.|++|++.+|.++...    ...+..+++|+.
T Consensus       177 -----------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  177 -----------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             -----------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence                       122233445555555555544332211   11344555555555555554321    223444555555


Q ss_pred             EEccCCcCCcCCChhhh----hcCCCCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcC
Q 003084          315 LDVSNNNFQGHIPVEIG----DILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKL  371 (850)
Q Consensus       315 L~Ls~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l  371 (850)
                      |++++|.+.......+.    ...|+|+++.+.+|.++.    .+..++...+.|+.|++++|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55555555433322222    223455555555555441    1112223344444444544444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=2.6e-10  Score=105.41  Aligned_cols=107  Identities=34%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCC-CCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccc-cCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL-VHL  184 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~-~~l  184 (850)
                      +.++++|+|++|.|..    |.  .+. .+.+|+.|++++|.++..  +.+..+++|+.|++++|.|+ .++. .+ ..+
T Consensus        18 ~~~~~~L~L~~n~I~~----Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~l   87 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST----IE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-
T ss_pred             cccccccccccccccc----cc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhC
Confidence            3445666666666643    32  333 355666666666666643  23555666666666666665 4543 23 346


Q ss_pred             CCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084          185 TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN  223 (850)
Q Consensus       185 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~  223 (850)
                      ++|++|++++|.+........++.+++|+.|++.+|++.
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            666666666666665444555666666666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.2e-10  Score=117.39  Aligned_cols=219  Identities=21%  Similarity=0.227  Sum_probs=118.9

Q ss_pred             cCCCCCCEEECCCCcCcCCCCc-ccccCCCCCCeEECcCCcCcCCCCc-ccccCCCCccEEEccCCccccccccccCCCC
Q 003084          157 ANTTSLRILDVSFNQLTGSISS-SPLVHLTSIEELRLSNNHFRIPVSL-EPLFNHSKLKIFDAKNNEINGEINESHSLTP  234 (850)
Q Consensus       157 ~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  234 (850)
                      .++.+|+...|.++.+. ..+. .....|++++.|||+.|-+..-.+. .....+++|+.|+++.|++........    
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----  192 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence            45677888888877764 3331 2466788888888888866532222 223457777777777777643221110    


Q ss_pred             ccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccE
Q 003084          235 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF  314 (850)
Q Consensus       235 ~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  314 (850)
                                            -..++.++.|.++.|.++-.--.+....+|+|+.|++..|........+...++.|+.
T Consensus       193 ----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  193 ----------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             ----------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence                                  0123456666777776664444455566777777777777544444444555666777


Q ss_pred             EEccCCcCCcCCChhhhhcCCCCcEEEccCCcCccc-CcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084          315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS-IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  393 (850)
Q Consensus       315 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  393 (850)
                      |||++|++-..-.......+|.|+.|+++.+.+... .|+.       ..+             .....+++|++|++..
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~s~-------------~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------ESL-------------DKTHTFPKLEYLNISE  310 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCc-------cch-------------hhhcccccceeeeccc
Confidence            777777664211112223356666666666655421 1111       000             0011245566666666


Q ss_pred             CccCcc-ccccccCCCCCCeeeccCCcCcc
Q 003084          394 NSLKGH-IFSRIFSLRNLRWLLLEGNHFVG  422 (850)
Q Consensus       394 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  422 (850)
                      |++... .-..+..+++|+.|.+..|.+..
T Consensus       311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  311 NNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             Cccccccccchhhccchhhhhhcccccccc
Confidence            665321 11234455666777776776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=1.4e-10  Score=113.83  Aligned_cols=241  Identities=21%  Similarity=0.274  Sum_probs=169.3

Q ss_pred             CCCCCCCEEeCCCCcCCcc----ccCccccCCCCCCCEEEcCCCC---Ccccchh-------hhhccCCCCcEEeCCCCc
Q 003084            2 GSFPSLNTLHLESNNFTAT----LTTTQELHNFTNLEYLTLDDSS---LHISLLQ-------SIGSIFPSLKNLSMSGCE   67 (850)
Q Consensus         2 ~~l~~L~~L~Ls~~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~-------~l~~~~~~L~~L~Ls~~~   67 (850)
                      ..+..+++++||+|.|...    +  ...+++-+.|+..++|+--   .....++       ++.. +++|++|+||+|-
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i--~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAI--AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG-CPKLQKLDLSDNA  103 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHH--HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc-CCceeEeeccccc
Confidence            3567899999999988643    3  5667888899999998852   2222232       3445 7799999999998


Q ss_pred             CCCcccC---CcCCCCCcccEEecccCCcccccchhhHhh------------hcCCCCcEEEccCCCCCCCCCccCCcCC
Q 003084           68 VNGVLSG---QGFPHFKSLEHLDMRFARIALNTSFLQIIG------------ESMPSLKYLSLSGSTLGTNSSRILDQGL  132 (850)
Q Consensus        68 ~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~------------~~l~~L~~L~ls~n~i~~~~~~i~~~~l  132 (850)
                      +....+.   ..+..+..|++|+|  .+|.+....-..++            .+-++||++...+|++...+....+..|
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L--~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYL--NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhh--hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            7654432   13467899999999  77776533222211            2368899999999998776655555678


Q ss_pred             CCCCCCCEEEccCCcccc----ccCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCCCCcc
Q 003084          133 CPLAHLQELYIDNNDLRG----SLPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLE  204 (850)
Q Consensus       133 ~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~~~~~  204 (850)
                      ...+.|+.+.++.|.|..    .+..+|..+++|+.||+..|.++..    +.. .+..+++|++|++++|.+.......
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHH
Confidence            888999999999998753    2345678999999999999988621    233 5677889999999999887322211


Q ss_pred             ---cc-cCCCCccEEEccCCccccccccc--cCCCCccceeEEEccCCCC
Q 003084          205 ---PL-FNHSKLKIFDAKNNEINGEINES--HSLTPKFQLKSLSLSSNYG  248 (850)
Q Consensus       205 ---~l-~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~~L~~L~ls~~~~  248 (850)
                         .+ ...++|+.+.+.+|.|+......  ......+.|++|++++|..
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               11 23688999999999887543322  1222355899999966643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=5.1e-10  Score=103.55  Aligned_cols=105  Identities=25%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  186 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~  186 (850)
                      +.+|+.|++++|.|+.    +.  .+..+++|++|++++|+++...+.....+++|++|++++|.|.+--.-..+..+++
T Consensus        41 l~~L~~L~Ls~N~I~~----l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK----LE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             -TT--EEE-TTS--S------T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred             hcCCCEEECCCCCCcc----cc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence            5677788888888765    43  56778888888888888875433222467888888888888863222235678888


Q ss_pred             CCeEECcCCcCcCCC--CcccccCCCCccEEEc
Q 003084          187 IEELRLSNNHFRIPV--SLEPLFNHSKLKIFDA  217 (850)
Q Consensus       187 L~~L~L~~n~~~~~~--~~~~l~~l~~L~~L~l  217 (850)
                      |++|++.+|++....  ....+..+|+|+.||-
T Consensus       115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            888888888876321  1223456777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.5e-09  Score=82.35  Aligned_cols=60  Identities=50%  Similarity=0.630  Sum_probs=36.5

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  713 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  713 (850)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555566666666666666666655555666666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=3.2e-10  Score=123.74  Aligned_cols=249  Identities=28%  Similarity=0.276  Sum_probs=142.6

Q ss_pred             CCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEE
Q 003084          406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  485 (850)
Q Consensus       406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  485 (850)
                      .+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..+ ...+..+++|++|++++|.|+...+  +..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence            34455555555555553 122244555666666666665522 1124445555555555555543321  2333444455


Q ss_pred             eccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcC
Q 003084          486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNL  564 (850)
Q Consensus       486 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  564 (850)
                      ++++|.+..                        +.  .+..++.|+.+++++|.+..+.+ . ...+.+++.+++.+|.+
T Consensus       146 ~l~~N~i~~------------------------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  146 NLSGNLISD------------------------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eeccCcchh------------------------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            555554431                        11  34446677777777777765433 2 45667777777777776


Q ss_pred             ccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccch
Q 003084          565 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  644 (850)
Q Consensus       565 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (850)
                      ...  ..+..+..+..+++..|.++...+.....                                              
T Consensus       199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~----------------------------------------------  230 (414)
T KOG0531|consen  199 REI--EGLDLLKKLVLLSLLDNKISKLEGLNELV----------------------------------------------  230 (414)
T ss_pred             hcc--cchHHHHHHHHhhcccccceeccCcccch----------------------------------------------
Confidence            532  22333444445566666665332211000                                              


Q ss_pred             hcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCccc---CChh-
Q 003084          645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-  720 (850)
Q Consensus       645 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~-  720 (850)
                             ...|+.+++++|++. ..+..+..++.+..|++++|++...  ..+.....+..+....|.+...   .... 
T Consensus       231 -------~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  231 -------MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             -------hHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence                   003788888888887 4446677788888999999888744  3455667777888888887632   2221 


Q ss_pred             hhcCCCCCEEEccCCcCcCCCCC
Q 003084          721 LVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       721 l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ....+.+....+.+|++....+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             ccccccccccccccCcccccccc
Confidence            45667888888888888765553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=1.9e-09  Score=81.76  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=57.8

Q ss_pred             CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcC
Q 003084          677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL  737 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  737 (850)
                      ++|++|++++|+++.+.+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999988889999999999999999999988889999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=5.6e-09  Score=114.06  Aligned_cols=197  Identities=26%  Similarity=0.311  Sum_probs=106.3

Q ss_pred             CCCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCC
Q 003084            2 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK   81 (850)
Q Consensus         2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~   81 (850)
                      +.+++|++|++.+|.|+..   ...+..+++|++|++++|.|...  ..+.. ++.|+.|++++|.+... .  .+..++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i---~~~l~~~~~L~~L~ls~N~I~~i--~~l~~-l~~L~~L~l~~N~i~~~-~--~~~~l~  162 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKI---ENLLSSLVNLQVLDLSFNKITKL--EGLST-LTLLKELNLSGNLISDI-S--GLESLK  162 (414)
T ss_pred             ccccceeeeeccccchhhc---ccchhhhhcchheeccccccccc--cchhh-ccchhhheeccCcchhc-c--CCccch
Confidence            3456666666666666654   12256666666666666666544  34455 55566666666666522 2  355566


Q ss_pred             cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCC
Q 003084           82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS  161 (850)
Q Consensus        82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  161 (850)
                      .|+.+++  +++++...-...... +.+++.+.+.+|.+..    +  ..+..+..+..+++..|.+....+  +..+..
T Consensus       163 ~L~~l~l--~~n~i~~ie~~~~~~-~~~l~~l~l~~n~i~~----i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~  231 (414)
T KOG0531|consen  163 SLKLLDL--SYNRIVDIENDELSE-LISLEELDLGGNSIRE----I--EGLDLLKKLVLLSLLDNKISKLEG--LNELVM  231 (414)
T ss_pred             hhhcccC--Ccchhhhhhhhhhhh-ccchHHHhccCCchhc----c--cchHHHHHHHHhhcccccceeccC--cccchh
Confidence            6666666  555544333310223 5666666666666543    1  133344444555666666553322  222222


Q ss_pred             --CCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084          162 --LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN  223 (850)
Q Consensus       162 --L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~  223 (850)
                        |+.+++++|.+. .++. .+..+.++..+++.+|.+...   ..+.....+..+....+.+.
T Consensus       232 ~~L~~l~l~~n~i~-~~~~-~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  232 LHLRELYLSGNRIS-RSPE-GLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHHHhcccCccc-cccc-cccccccccccchhhcccccc---ccccccchHHHhccCcchhc
Confidence              667777777765 4432 466666777777777665522   22333444444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=2.5e-08  Score=116.12  Aligned_cols=57  Identities=26%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             hccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEEC
Q 003084          652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDL  708 (850)
Q Consensus       652 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  708 (850)
                      .++|+.|.+..+...+.+......+..++.+-+..+.+.+. .-...+.++++..+.+
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence            56899999998877666666666677777777777777655 2344445555544443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=7.5e-10  Score=105.99  Aligned_cols=183  Identities=19%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             CCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084            6 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE   84 (850)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~   84 (850)
                      .|++||||+..|+... .-..++.|++|+.|.|.++++++.....+.+ -.+|+.|+|+.|. ++.....-.+..|+.|.
T Consensus       186 Rlq~lDLS~s~it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence            3667777766665321 0234566777777777777776665556666 6777777777664 22111111345666666


Q ss_pred             EEecccCCcccccc-hhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc-cccccCccccCCCCC
Q 003084           85 HLDMRFARIALNTS-FLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGSLPWCLANTTSL  162 (850)
Q Consensus        85 ~L~L~~~~~~~~~~-~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  162 (850)
                      .|++  +-|..... ....+..--++|+.|+++|+.-.-....+. .-...+++|..|||+.|. ++......|.+++.|
T Consensus       264 ~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  264 ELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            6666  44432211 111111112356666666653111000111 122345666666666553 232233345556666


Q ss_pred             CEEECCCCcCcCCCCcc--cccCCCCCCeEECcCC
Q 003084          163 RILDVSFNQLTGSISSS--PLVHLTSIEELRLSNN  195 (850)
Q Consensus       163 ~~L~Ls~n~i~~~i~~~--~~~~l~~L~~L~L~~n  195 (850)
                      ++|.++.|..  -+|..  .+...|.|.+||+.++
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            6666666552  12221  1234455555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=6e-08  Score=113.04  Aligned_cols=200  Identities=23%  Similarity=0.290  Sum_probs=112.7

Q ss_pred             CCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCc--CCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 003084          286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNN--FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF  363 (850)
Q Consensus       286 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  363 (850)
                      ...+...+-++.+.....  -..+++|++|-+..|.  +. .++..+|..+|.|++|++++|.--+..|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            445555555555433211  1234567777777775  33 667777777778888888877665677777777788888


Q ss_pred             EEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCc--ccCCcCCCCCCCCcEEECcC
Q 003084          364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV--GEIPQSLSKCSSLKGLYLNN  441 (850)
Q Consensus       364 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~  441 (850)
                      |++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+......  ...-..+..+.+|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            888887777 77777654 777777877777655455555666777777777655421  11112233444444444433


Q ss_pred             CCCCCCCcccccCCCCCc----EEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084          442 NNLSGKIPRWLGNLKGLQ----HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       442 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      ...  ..-..+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            222  0111122222222    2222222211 23334556666777777766664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=6.5e-09  Score=111.33  Aligned_cols=128  Identities=24%  Similarity=0.314  Sum_probs=94.3

Q ss_pred             hhhhhhccccchhcc-hhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084          633 LEIFEFTTKNIAYAY-QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  711 (850)
Q Consensus       633 ~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  711 (850)
                      +...++.++.+.... ..+.++.++.|||++|+++..  +.+..++.|++|||+.|.+....--....+. |..|.+++|
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            344445555444332 235678999999999999855  3789999999999999999854333444455 999999999


Q ss_pred             cCcccCChhhhcCCCCCEEEccCCcCcCCCCC-CccccCCCCccccCCCCCCCCC
Q 003084          712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGL  765 (850)
Q Consensus       712 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~~n~~~c~~  765 (850)
                      .++..  .++.++.+|+-||+++|-|++.--- ....+..+..+.+.|||..|.+
T Consensus       243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            98742  4678899999999999988764322 1234566777889999988865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=8.3e-09  Score=98.97  Aligned_cols=182  Identities=18%  Similarity=0.152  Sum_probs=109.9

Q ss_pred             CCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCC-CCCCCCccCCcCCCC
Q 003084           56 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST-LGTNSSRILDQGLCP  134 (850)
Q Consensus        56 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~-i~~~~~~i~~~~l~~  134 (850)
                      ++|+++|||...|+..-....+..|.+|+.|.+  .++++++.+...+++ -.+|+.|+++.+. ++..+   ..-.+.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl--Eg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~---~~ll~~s  258 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL--EGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENA---LQLLLSS  258 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccc--cccccCcHHHHHHhc-cccceeeccccccccchhH---HHHHHHh
Confidence            357888888777664333334677778888877  777777777777777 7778888887764 33211   1124567


Q ss_pred             CCCCCEEEccCCccccccCcc-ccC-CCCCCEEECCCCcC---cCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCC
Q 003084          135 LAHLQELYIDNNDLRGSLPWC-LAN-TTSLRILDVSFNQL---TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH  209 (850)
Q Consensus       135 l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~Ls~n~i---~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l  209 (850)
                      |+.|+.|++++|.+....-.. +.+ -++|+.|+++++.-   ...+.. -...+++|.+|||++|......-...+.++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhc
Confidence            778888888887665332111 111 15677777776531   112222 235677888888877654433334456677


Q ss_pred             CCccEEEccCCccccccccccCCCCccceeEEEccC
Q 003084          210 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS  245 (850)
Q Consensus       210 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~  245 (850)
                      +.|+++.++.|-.. .+.....+...+.|.+|++-+
T Consensus       338 ~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             chheeeehhhhcCC-ChHHeeeeccCcceEEEEecc
Confidence            78888888777532 122223334445788888733

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.44  E-value=6.3e-09  Score=104.73  Aligned_cols=305  Identities=17%  Similarity=0.090  Sum_probs=151.6

Q ss_pred             CCCEEEcCCCC-CcccchhhhhccCCCCcEEeCCCCcCCCccc-CCcCCCCCcccEEecccCCc-ccccchhhHhhhcCC
Q 003084           32 NLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLS-GQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMP  108 (850)
Q Consensus        32 ~L~~L~Ls~n~-i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~l~~~l~  108 (850)
                      -|+.|.+.++. +.+.....+...+|++++|++.+|....... ...-..+++|++|++  ..| .+++.....++++++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L--~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL--HSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh--cccchhHHHHHHHHHHhhh
Confidence            46777777763 2333223444447777777777775221111 111245677777777  553 355555565666677


Q ss_pred             CCcEEEccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCccccc--cCccccCCCCCCEEECCCCc-CcCCCCc-ccccC
Q 003084          109 SLKYLSLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDLRGS--LPWCLANTTSLRILDVSFNQ-LTGSISS-SPLVH  183 (850)
Q Consensus       109 ~L~~L~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~i~~-~~~~~  183 (850)
                      +|++|+++++. |++++  +. ..+.+++.++.+.+.+|.-...  +...=..+..+..+++..+. ++ .... ..-..
T Consensus       217 kL~~lNlSwc~qi~~~g--v~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~  292 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNG--VQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACG  292 (483)
T ss_pred             hHHHhhhccCchhhcCc--ch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhh
Confidence            77777777764 33311  11 1344555666666665421110  00011233444455544442 22 1110 01124


Q ss_pred             CCCCCeEECcCCcCcCCCCcccc-cCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCC-CcccCccccCCC
Q 003084          184 LTSIEELRLSNNHFRIPVSLEPL-FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD-SVTFPKFLYHQH  261 (850)
Q Consensus       184 l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~l~~~~  261 (850)
                      +.+|++|+.+++.-.+......+ .++.+|+.+.+.+++.-.......-...+++|+.+++...... .+++...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            55666666666544332222222 2456666666666653222221222233446666666333222 222344445677


Q ss_pred             CccEEEccCCcccccCchhh----hhcCCCCcEEEccCCcCcCc-CccCcCCCCCccEEEccCCcCCcCCC-hhhhhcCC
Q 003084          262 ELKEAELSHIKMIGEFPNWL----LENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIP-VEIGDILP  335 (850)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~  335 (850)
                      .|+++.++.+..........    -.....++.+.++++..... .-..+..+++|+.+++-.++-...-+ ..+...+|
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp  452 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP  452 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence            88888887665443221111    13456778888888765432 22345678888888887775321222 22334466


Q ss_pred             CCcEEEc
Q 003084          336 SLVYFNI  342 (850)
Q Consensus       336 ~L~~L~L  342 (850)
                      ++++..+
T Consensus       453 ~i~v~a~  459 (483)
T KOG4341|consen  453 NIKVHAY  459 (483)
T ss_pred             cceehhh
Confidence            6665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.38  E-value=1.2e-08  Score=102.68  Aligned_cols=307  Identities=16%  Similarity=0.067  Sum_probs=124.5

Q ss_pred             CCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084            7 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE   84 (850)
Q Consensus         7 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~   84 (850)
                      |+.|.+.|+.=.+.-.....-++++++++|++.++ .+++.....+...+++|++|++..|. ++..........+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            55555655432111111223345666666666665 44444444555556666666666643 22111111234556666


Q ss_pred             EEecccCCc-ccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcc-ccccC-ccccCCCC
Q 003084           85 HLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-RGSLP-WCLANTTS  161 (850)
Q Consensus        85 ~L~L~~~~~-~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~  161 (850)
                      +|++  +.| ++.+.....+..+++.++.+.+.||.=.+.  +.....-+.+..+.++++.+|.. ++... ..-.++.+
T Consensus       220 ~lNl--Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  220 YLNL--SWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             Hhhh--ccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            6666  333 233333333333355555555444421110  00000112233344444444421 11110 01123445


Q ss_pred             CCEEECCCCcCcCCCCcccc-cCCCCCCeEECcCCcCcCCCCccccc-CCCCccEEEccCCccccccccccCCCCcccee
Q 003084          162 LRILDVSFNQLTGSISSSPL-VHLTSIEELRLSNNHFRIPVSLEPLF-NHSKLKIFDAKNNEINGEINESHSLTPKFQLK  239 (850)
Q Consensus       162 L~~L~Ls~n~i~~~i~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  239 (850)
                      |+.|+.+++.-.+..+-.++ .+..+|++|.++.++-.+...+..++ +++.|+.+++..+..............++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            55555544432111111011 23445555555544422222222222 34455555554443332221111122333455


Q ss_pred             EEEccCCCCCCcc----cCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCc--cCcCCCCCcc
Q 003084          240 SLSLSSNYGDSVT----FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR--LPIHSHKRLR  313 (850)
Q Consensus       240 ~L~ls~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~  313 (850)
                      ++.++.+...+..    +...-.....++.+.++++..+....-.....++.|+.+++-++.-....+  ..-..+|+++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK  455 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence            5555433222211    011112344566666666665544444444566677777766654332111  1123455555


Q ss_pred             EEEc
Q 003084          314 FLDV  317 (850)
Q Consensus       314 ~L~L  317 (850)
                      +..+
T Consensus       456 v~a~  459 (483)
T KOG4341|consen  456 VHAY  459 (483)
T ss_pred             ehhh
Confidence            5443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1e-08  Score=109.92  Aligned_cols=107  Identities=28%  Similarity=0.375  Sum_probs=70.4

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  186 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~  186 (850)
                      ++.|+.|||++|+++.      .+.+..|++|++|||++|.+....--...+++ |+.|.+++|.++ ++-.  +.+|.+
T Consensus       186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~g--ie~Lks  255 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLRG--IENLKS  255 (1096)
T ss_pred             HHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhhh--HHhhhh
Confidence            5667777777777754      23566677777777777776643322333444 777777777776 4443  677777


Q ss_pred             CCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084          187 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN  223 (850)
Q Consensus       187 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~  223 (850)
                      |+.||+++|-+.+......+..+..|+.|.+.+|.+-
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777777766555566666677777777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=4.6e-07  Score=87.24  Aligned_cols=188  Identities=15%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             CCCCCCEEEcCCCCCccc--chhhhhccCCCCcEEeCCCCcCCCcccCCcC-CCCCcccEEecccCCcccccchhhHhhh
Q 003084           29 NFTNLEYLTLDDSSLHIS--LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF-PHFKSLEHLDMRFARIALNTSFLQIIGE  105 (850)
Q Consensus        29 ~l~~L~~L~Ls~n~i~~~--~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~l~~  105 (850)
                      .+++++.+||.+|.|++=  ...-+.+ +|.|++|+|+.|.+...+.  .+ ...++|++|-|  ++..+.-.-..++..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVL--NgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVL--NGTGLSWTQSTSSLD  143 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccc--cCcccccceEEEEE--cCCCCChhhhhhhhh
Confidence            455666666666665531  1112233 6666666666666554333  22 34556666666  444333222222323


Q ss_pred             cCCCCcEEEccCCCCCCCCCccCCcCCCCC-CCCCEEEccCCcccc--ccCccccCCCCCCEEECCCCcCcCCCCccccc
Q 003084          106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPL-AHLQELYIDNNDLRG--SLPWCLANTTSLRILDVSFNQLTGSISSSPLV  182 (850)
Q Consensus       106 ~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~  182 (850)
                      .+|.++.|.+|.|.+...  .+........ +.+++|.+-.|....  ..-..-.-.+++..+-+..|.++..-....+.
T Consensus       144 ~lP~vtelHmS~N~~rq~--n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se  221 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQL--NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE  221 (418)
T ss_pred             cchhhhhhhhccchhhhh--ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence            355555665555533210  0111111111 133344443332110  00000011244444555555444222223444


Q ss_pred             CCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084          183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN  223 (850)
Q Consensus       183 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~  223 (850)
                      .++.+-.|+|+.|++..-.....+..+++|..+.++++.+.
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            55555555666665554444445555555555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=8.7e-08  Score=81.23  Aligned_cols=82  Identities=26%  Similarity=0.403  Sum_probs=47.7

Q ss_pred             cCCeEEccCCccccCCCccccC-CCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGN-LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  732 (850)
                      .|+..+|++|.+. ..|+.|.. .+..+.|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|+.+..+.+|.+|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3555566666665 33444432 345666666666666 44555666666666666666665 45555555666666666


Q ss_pred             cCCcCc
Q 003084          733 AYNNLS  738 (850)
Q Consensus       733 ~~N~l~  738 (850)
                      .+|.+.
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=1e-06  Score=100.28  Aligned_cols=110  Identities=17%  Similarity=0.347  Sum_probs=73.3

Q ss_pred             CCCCEEeCCCCcCCc-cccCccccC-CCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCc
Q 003084            5 PSLNTLHLESNNFTA-TLTTTQELH-NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS   82 (850)
Q Consensus         5 ~~L~~L~Ls~~~~~~-~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~   82 (850)
                      .+|++||++|...-. ..  +..++ .||.|++|.+++-.+.......+..-+|+|+.||+|+++++..   ..++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence            467888888764322 22  22333 5788888888887766554555554488888888888887744   25788888


Q ss_pred             ccEEecccCCccccc-chhhHhhhcCCCCcEEEccCCCCCC
Q 003084           83 LEHLDMRFARIALNT-SFLQIIGESMPSLKYLSLSGSTLGT  122 (850)
Q Consensus        83 L~~L~L~~~~~~~~~-~~~~~l~~~l~~L~~L~ls~n~i~~  122 (850)
                      |++|.+  .+-.+.. .....+.. |++|++||+|......
T Consensus       197 Lq~L~m--rnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  197 LQVLSM--RNLEFESYQDLIDLFN-LKKLRVLDISRDKNND  234 (699)
T ss_pred             HHHHhc--cCCCCCchhhHHHHhc-ccCCCeeecccccccc
Confidence            888888  5555543 33445566 8888888888766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=8.7e-07  Score=85.42  Aligned_cols=110  Identities=18%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             CCCCCEEECCCCcCcCCCCcccc-cCCCCCCeEECcCCcCcCCC-CcccccCCCCccEEEccCCccccccccccCCCCcc
Q 003084          159 TTSLRILDVSFNQLTGSISSSPL-VHLTSIEELRLSNNHFRIPV-SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF  236 (850)
Q Consensus       159 l~~L~~L~Ls~n~i~~~i~~~~~-~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  236 (850)
                      ...++.|.+.++.|...-....| ..++.++.+||.+|.++.-. ..+.+.+++.|+.|+++.|.+........  .|..
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~  121 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK  121 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence            34455566666665421111122 35567888888888876311 11235678888888888887765443322  3444


Q ss_pred             ceeEEEccCCCCCC-cccCccccCCCCccEEEccCC
Q 003084          237 QLKSLSLSSNYGDS-VTFPKFLYHQHELKEAELSHI  271 (850)
Q Consensus       237 ~L~~L~ls~~~~~~-~~~~~~l~~~~~L~~L~l~~~  271 (850)
                      +|++|-+ .+.... ......+..++.+++++++.|
T Consensus       122 nl~~lVL-NgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  122 NLRVLVL-NGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ceEEEEE-cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            6666666 222221 112233334444455544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.02  E-value=7.8e-07  Score=84.55  Aligned_cols=218  Identities=20%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc---c-------ccCccccCCCCCCEEECCCCcCcCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR---G-------SLPWCLANTTSLRILDVSFNQLTGSI  176 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~---~-------~~~~~~~~l~~L~~L~Ls~n~i~~~i  176 (850)
                      +..++.++||||.|...+++.....+.+-.+|+..+++.-...   .       .+..++-+||+|+..+||.|-+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5566666666666655333333344555566666666553211   1       12234556677777777777664333


Q ss_pred             Cc---ccccCCCCCCeEECcCCcCcCCCCc-------------ccccCCCCccEEEccCCccccccccccCCCCccceeE
Q 003084          177 SS---SPLVHLTSIEELRLSNNHFRIPVSL-------------EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS  240 (850)
Q Consensus       177 ~~---~~~~~l~~L~~L~L~~n~~~~~~~~-------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  240 (850)
                      |.   ..+.+-+.|.+|.+++|.+. ++.-             ...++-+.|+.+.+..|++........          
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~----------  177 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS----------  177 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH----------
Confidence            33   12345566777777777553 1111             113345677777777776643221110          


Q ss_pred             EEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhh----hhcCCCCcEEEccCCcCcCcCc----cCcCCCCCc
Q 003084          241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL----LENNTKLEFLYLVNDSLAGPFR----LPIHSHKRL  312 (850)
Q Consensus       241 L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L  312 (850)
                                   ...+.....|+++.+..|.+.......+    ...+.+|+.|++.+|.++-...    ..+...+.|
T Consensus       178 -------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         178 -------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             -------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence                         0111122344555554444332211110    1234556666666665543221    223445556


Q ss_pred             cEEEccCCcCCcCCChhhhhc-----CCCCcEEEccCCcCc
Q 003084          313 RFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALD  348 (850)
Q Consensus       313 ~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~  348 (850)
                      +.|.+..|-++.....+++..     .|+|..|...+|...
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            677776666654444443322     355566665555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.4e-05  Score=55.02  Aligned_cols=36  Identities=42%  Similarity=0.700  Sum_probs=15.7

Q ss_pred             CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084          678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  714 (850)
Q Consensus       678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  714 (850)
                      +|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2333444444555555544444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.81  E-value=1.6e-06  Score=73.79  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=62.4

Q ss_pred             CCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCC
Q 003084          308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  387 (850)
Q Consensus       308 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  387 (850)
                      ....|+..+|++|.+. .+|..+...++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|.-++. +.++.
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~  126 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLD  126 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHH
Confidence            3455667777777776 677777666777777777777777 56666777777777777777777 66666665 66777


Q ss_pred             EEEccCCccCcc
Q 003084          388 FLSLSNNSLKGH  399 (850)
Q Consensus       388 ~L~l~~n~l~~~  399 (850)
                      .|+..+|.+..+
T Consensus       127 ~Lds~~na~~ei  138 (177)
T KOG4579|consen  127 MLDSPENARAEI  138 (177)
T ss_pred             HhcCCCCccccC
Confidence            777777766533

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=6.3e-05  Score=78.72  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=16.6

Q ss_pred             CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084          677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  711 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  711 (850)
                      ++|+.|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35666666665544 2333333  45666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=4.6e-06  Score=95.02  Aligned_cols=154  Identities=23%  Similarity=0.265  Sum_probs=107.8

Q ss_pred             CCCCcEEeCCCCcCCCc-ccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCC
Q 003084           55 FPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC  133 (850)
Q Consensus        55 ~~~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~  133 (850)
                      -.+|++|+++|...... .+...-..+|.|++|.+  .+-.+...-...++.++|+|+.||+|+++++.    +  ..++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS  192 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISN----L--SGIS  192 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccC----c--HHHh
Confidence            35799999999664322 22223457799999999  77666444345555669999999999999976    3  4788


Q ss_pred             CCCCCCEEEccCCcccc-ccCccccCCCCCCEEECCCCcCcCCCCc------ccccCCCCCCeEECcCCcCcCCCCcccc
Q 003084          134 PLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISS------SPLVHLTSIEELRLSNNHFRIPVSLEPL  206 (850)
Q Consensus       134 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~i~~------~~~~~l~~L~~L~L~~n~~~~~~~~~~l  206 (850)
                      .+++|+.|.+.+-.+.. ..-..+.++++|+.||+|..... ..+.      ..-..||+|+.||.|++.+....-...+
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            99999999998876653 33345778999999999987654 2221      0123589999999999887754433334


Q ss_pred             cCCCCccEEEc
Q 003084          207 FNHSKLKIFDA  217 (850)
Q Consensus       207 ~~l~~L~~L~l  217 (850)
                      ..-++|+.+.+
T Consensus       272 ~sH~~L~~i~~  282 (699)
T KOG3665|consen  272 NSHPNLQQIAA  282 (699)
T ss_pred             HhCccHhhhhh
Confidence            44566665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=2.1e-05  Score=54.22  Aligned_cols=38  Identities=42%  Similarity=0.718  Sum_probs=32.2

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT  692 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  692 (850)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++..
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            6999999999999 4666799999999999999999843

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.73  E-value=9.1e-06  Score=77.50  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             CCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCC---CC
Q 003084          134 PLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIP---VS  202 (850)
Q Consensus       134 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~---~~  202 (850)
                      +-+.|++.+...|++..-    ....+.....|+.+.+.+|.|.-.    +.-..+..+.+|++||+..|.++-.   .-
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            456777777777776531    222344446777777777776511    1111234567788888888877621   11


Q ss_pred             cccccCCCCccEEEccCCccccc
Q 003084          203 LEPLFNHSKLKIFDAKNNEINGE  225 (850)
Q Consensus       203 ~~~l~~l~~L~~L~l~~n~~~~~  225 (850)
                      ...+...+.|+.|.+..|-++..
T Consensus       235 a~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHhcccchhhhccccchhhccc
Confidence            12234455677788877776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.68  E-value=9.6e-05  Score=66.24  Aligned_cols=105  Identities=23%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCC
Q 003084          330 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN  409 (850)
Q Consensus       330 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  409 (850)
                      +|..+++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            333344444444442 233333334444444555554442 33 44444444444444444433 222223333444444


Q ss_pred             CCeeeccCCcCcccCCcCCCCCCCCcEEECc
Q 003084          410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN  440 (850)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  440 (850)
                      |+.+.+..+ +.......|.++ +++.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            444444332 222223334443 44444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.64  E-value=0.00011  Score=65.86  Aligned_cols=82  Identities=18%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             hhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 003084          282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL  361 (850)
Q Consensus       282 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  361 (850)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence            44444555555442 233333344444444555554443 32 33444444444444444433 2222223334444444


Q ss_pred             CEEEcc
Q 003084          362 QFLDLS  367 (850)
Q Consensus       362 ~~L~L~  367 (850)
                      +.+++.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=0.00012  Score=67.23  Aligned_cols=108  Identities=20%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  186 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~  186 (850)
                      +.+...+||++|.+..    +  ..|..++.|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.|..--....+..|++
T Consensus        41 ~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            4567778888888754    2  367778888888888888887777666667788888888887752112224677788


Q ss_pred             CCeEECcCCcCcCC--CCcccccCCCCccEEEccCC
Q 003084          187 IEELRLSNNHFRIP--VSLEPLFNHSKLKIFDAKNN  220 (850)
Q Consensus       187 L~~L~L~~n~~~~~--~~~~~l~~l~~L~~L~l~~n  220 (850)
                      |++|.+-+|++...  ...-.+..+++|+.||.+.-
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            88888888876521  22223456677777776554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00011  Score=67.40  Aligned_cols=105  Identities=24%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCc-ccccCCCCCcEE
Q 003084          383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHI  461 (850)
Q Consensus       383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  461 (850)
                      ..+...+|+++|.+..  .+.|..++.|.+|.+.+|+|+.+.|.--.-+++|..|.+.+|++..... ..+..|++|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3445555666555542  2234455566666666666665544433344556666666665542211 234455566666


Q ss_pred             ECCCCccccCc---chhccCCCCCCEEeccC
Q 003084          462 VMPKNHLEGPI---PVEFCRLDSLQILDISD  489 (850)
Q Consensus       462 ~l~~n~l~~~~---~~~~~~l~~L~~L~ls~  489 (850)
                      .+-+|+++..-   ...+..+++|+.||+.+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            66665554321   12344566666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.00076  Score=70.82  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=22.9

Q ss_pred             CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 003084          310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN  369 (850)
Q Consensus       310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  369 (850)
                      .+++.|++++|.++ .+|.    ..++|++|.+++|.--..+|..+  .++|++|++++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            44445555555444 3441    12345555555433222333322  134555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00036  Score=67.18  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=48.1

Q ss_pred             CCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC--CCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCC
Q 003084            3 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS--SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF   80 (850)
Q Consensus         3 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l   80 (850)
                      .+..|+.|++.+..++..    ..+-.+++|++|.+|.|  ++.......... +|+|++|++++|++...-....+..+
T Consensus        41 ~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhh
Confidence            345566666666655543    33555667777777777  444442223333 67777777777776532222234555


Q ss_pred             CcccEEecccCCcc
Q 003084           81 KSLEHLDMRFARIA   94 (850)
Q Consensus        81 ~~L~~L~L~~~~~~   94 (850)
                      ++|..|++  .+|.
T Consensus       116 ~nL~~Ldl--~n~~  127 (260)
T KOG2739|consen  116 ENLKSLDL--FNCS  127 (260)
T ss_pred             cchhhhhc--ccCC
Confidence            66666666  4444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.95  E-value=7.4e-05  Score=84.53  Aligned_cols=115  Identities=22%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCC-cCCCccc---CCcCCCCCcccEEecccCCcc-cccchhhH
Q 003084           29 NFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGC-EVNGVLS---GQGFPHFKSLEHLDMRFARIA-LNTSFLQI  102 (850)
Q Consensus        29 ~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~-~~~~~~~---~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~  102 (850)
                      .++.|+.|.+..+ .+.......+...++.|+.|+++++ ......+   ......+++|+.|++  ..+. +++.....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l--~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL--SGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccch--hhhhccCchhHHH
Confidence            3566666666655 3333222222222666666666652 1110111   112344466666666  4444 45555555


Q ss_pred             hhhcCCCCcEEEccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCcc
Q 003084          103 IGESMPSLKYLSLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDL  148 (850)
Q Consensus       103 l~~~l~~L~~L~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l  148 (850)
                      ++..|++|+.|.+.++. ++.   .-.......++.|++|++++|..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhhCCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCcc
Confidence            55546666666655555 333   11112334455666666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.60  E-value=0.00029  Score=79.64  Aligned_cols=62  Identities=27%  Similarity=0.188  Sum_probs=27.4

Q ss_pred             CCCCcEEEccCCc-CcccCcccccC-CCCCCEEEccCCc-CCCCcchHHhhcCCCCCEEEccCCc
Q 003084          334 LPSLVYFNISMNA-LDGSIPSSFGN-VIFLQFLDLSNNK-LTGEIPDHLAMCCVNLEFLSLSNNS  395 (850)
Q Consensus       334 l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~  395 (850)
                      +++|+.++++.+. ++...-..+.. +++|++|.+.++. +++..-..+...+++|++|+++.+.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555555554 33222122211 4455555544444 3333333334445555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0017  Score=62.67  Aligned_cols=83  Identities=25%  Similarity=0.407  Sum_probs=40.6

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC--ccccccCccccCCCCCCEEECCCCcCcC--CCCccccc
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN--DLRGSLPWCLANTTSLRILDVSFNQLTG--SISSSPLV  182 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~i~~~~~~  182 (850)
                      +..|+.|++.+..++.    +  ..+..+++|++|.++.|  ++.+.++--...+++|++|++++|+++.  +++  .+.
T Consensus        42 ~~~le~ls~~n~gltt----~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT----L--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK  113 (260)
T ss_pred             ccchhhhhhhccceee----c--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence            4455555555555443    1  23445566666666666  4444433334444566666666665541  111  133


Q ss_pred             CCCCCCeEECcCCcC
Q 003084          183 HLTSIEELRLSNNHF  197 (850)
Q Consensus       183 ~l~~L~~L~L~~n~~  197 (850)
                      .+.+|..|++.+|..
T Consensus       114 ~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSV  128 (260)
T ss_pred             hhcchhhhhcccCCc
Confidence            444445555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00019  Score=69.01  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=61.0

Q ss_pred             CCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchh-hHhhhcCC
Q 003084           30 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL-QIIGESMP  108 (850)
Q Consensus        30 l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~l~  108 (850)
                      +.+.+.|++-++.+++.  ..... ++.|++|.||-|+|+..-   .+.+|++|++|+|  ..|.+.+.-- .-+.+ +|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~k-Mp~lEVLsLSvNkIssL~---pl~rCtrLkElYL--RkN~I~sldEL~YLkn-lp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEK-MPLLEVLSLSVNKISSLA---PLQRCTRLKELYL--RKNCIESLDELEYLKN-LP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHh-cccceeEEeeccccccch---hHHHHHHHHHHHH--HhcccccHHHHHHHhc-Cc
Confidence            55778888888887755  22334 899999999999988443   4889999999999  7776654432 23334 88


Q ss_pred             CCcEEEccCCCCCC
Q 003084          109 SLKYLSLSGSTLGT  122 (850)
Q Consensus       109 ~L~~L~ls~n~i~~  122 (850)
                      +|+.|.|..|.-.+
T Consensus        89 sLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   89 SLRTLWLDENPCCG  102 (388)
T ss_pred             hhhhHhhccCCccc
Confidence            88888888776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.0002  Score=68.89  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             CCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcc
Q 003084            4 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL   83 (850)
Q Consensus         4 l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L   83 (850)
                      +.+++.|++-|+.++++    ....+++.|+.|.||-|.|+..  ..+.. |++|+.|.|..|.|...-....+.++++|
T Consensus        18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL--~pl~r-CtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSL--APLQR-CTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccc--hhHHH-HHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            56788899999999886    3366899999999999999865  56777 99999999999998765444467899999


Q ss_pred             cEEecccCCcccccchh-----hHhhhcCCCCcEEE
Q 003084           84 EHLDMRFARIALNTSFL-----QIIGESMPSLKYLS  114 (850)
Q Consensus        84 ~~L~L~~~~~~~~~~~~-----~~l~~~l~~L~~L~  114 (850)
                      ++|.|  ..|+-.+...     ..+.. +|+|++||
T Consensus        91 r~LWL--~ENPCc~~ag~nYR~~VLR~-LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWL--DENPCCGEAGQNYRRKVLRV-LPNLKKLD  123 (388)
T ss_pred             hhHhh--ccCCcccccchhHHHHHHHH-cccchhcc
Confidence            99999  5554333321     12223 77787776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.69  E-value=0.012  Score=33.49  Aligned_cols=12  Identities=58%  Similarity=0.769  Sum_probs=5.2

Q ss_pred             CCEEECcCCcCC
Q 003084          679 IQTLNLSHNNLT  690 (850)
Q Consensus       679 L~~L~Ls~N~l~  690 (850)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.014  Score=33.26  Aligned_cols=12  Identities=58%  Similarity=0.598  Sum_probs=5.8

Q ss_pred             CCeEEccCCccc
Q 003084          655 LAGLDLSCNKLV  666 (850)
Q Consensus       655 L~~L~Ls~n~l~  666 (850)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.23  E-value=0.0065  Score=56.22  Aligned_cols=79  Identities=19%  Similarity=0.383  Sum_probs=54.3

Q ss_pred             CCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084            7 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE   84 (850)
Q Consensus         7 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~   84 (850)
                      ++.+|-+++.|..+.  .+.+.+++.++.|.+.++ .+.+-....++...++|+.|+|++|. |++. ....+.++++|+
T Consensus       103 IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLR  179 (221)
T ss_pred             EEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhH
Confidence            467777887777665  677778888888888887 45544455566667888888888876 3322 222466777777


Q ss_pred             EEec
Q 003084           85 HLDM   88 (850)
Q Consensus        85 ~L~L   88 (850)
                      .|.+
T Consensus       180 ~L~l  183 (221)
T KOG3864|consen  180 RLHL  183 (221)
T ss_pred             HHHh
Confidence            7777

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.07  E-value=0.00042  Score=75.75  Aligned_cols=186  Identities=25%  Similarity=0.264  Sum_probs=108.1

Q ss_pred             CCEEEcCCCCCcccchhh----hhccCCCCcEEeCCCCcCCCcccC---CcCCCC-CcccEEecccCCcccccch----h
Q 003084           33 LEYLTLDDSSLHISLLQS----IGSIFPSLKNLSMSGCEVNGVLSG---QGFPHF-KSLEHLDMRFARIALNTSF----L  100 (850)
Q Consensus        33 L~~L~Ls~n~i~~~~~~~----l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l-~~L~~L~L~~~~~~~~~~~----~  100 (850)
                      +..|.|.+|.+.+...+.    +.. .+.|+.|++++|.+.+....   ..+... ..|++|++  ..|.+++..    .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l--~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLEL--VSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHh--hcccccccchHHHH
Confidence            677777777777665543    333 56677777777776522110   122332 55666777  566655443    3


Q ss_pred             hHhhhcCCCCcEEEccCCCCCCCCCccCCcCCC----CCCCCCEEEccCCcccc----ccCccccCCCC-CCEEECCCCc
Q 003084          101 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC----PLAHLQELYIDNNDLRG----SLPWCLANTTS-LRILDVSFNQ  171 (850)
Q Consensus       101 ~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~-L~~L~Ls~n~  171 (850)
                      ..+.. ..+++.++++.|.+...+....+..+.    ...++++|++++|.++.    .+...+...+. ++.|++.+|.
T Consensus       166 ~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  166 AVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            34444 677788888888775444333333443    46778888888887652    12334455555 6678888887


Q ss_pred             CcCC----CCcccccCC-CCCCeEECcCCcCcCCC---CcccccCCCCccEEEccCCccc
Q 003084          172 LTGS----ISSSPLVHL-TSIEELRLSNNHFRIPV---SLEPLFNHSKLKIFDAKNNEIN  223 (850)
Q Consensus       172 i~~~----i~~~~~~~l-~~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~l~~n~~~  223 (850)
                      +.+.    +.. .+..+ ..+++++++.|.+....   ....+..++.++.+.++.|.+.
T Consensus       245 l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            6532    111 23334 56678888888776321   1223445666777777766654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.01  E-value=0.0043  Score=67.98  Aligned_cols=190  Identities=27%  Similarity=0.302  Sum_probs=130.2

Q ss_pred             CCEEeCCCCcCCccc--cCccccCCCCCCCEEEcCCCCCcccchhhhhcc---C-CCCcEEeCCCCcCCCcccC---CcC
Q 003084            7 LNTLHLESNNFTATL--TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---F-PSLKNLSMSGCEVNGVLSG---QGF   77 (850)
Q Consensus         7 L~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~---~-~~L~~L~Ls~~~~~~~~~~---~~~   77 (850)
                      +..|.|.+|.+++..  .....+.....|..|++++|.+.+.....+.+.   . ..+++|++..|.+++....   ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677888888887542  114567788899999999999886655544432   2 4578888888887654322   135


Q ss_pred             CCCCcccEEecccCCcccccc----hhhHhhh---cCCCCcEEEccCCCCCCCCCccCCcCCCCCCC-CCEEEccCCccc
Q 003084           78 PHFKSLEHLDMRFARIALNTS----FLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH-LQELYIDNNDLR  149 (850)
Q Consensus        78 ~~l~~L~~L~L~~~~~~~~~~----~~~~l~~---~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~-L~~L~L~~n~l~  149 (850)
                      .....++.+++  ..|.+...    .+..+..   ...++++|.+++|.++..........+...+. +..+++..|.+.
T Consensus       169 ~~~~~l~~l~l--~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EKNEHLTELDL--SLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             hcccchhHHHH--HhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            56788899998  66665322    2222221   25678999999999876444444445555666 777999999876


Q ss_pred             cc----cCccccCC-CCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcC
Q 003084          150 GS----LPWCLANT-TSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRI  199 (850)
Q Consensus       150 ~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~  199 (850)
                      ..    ....+..+ ..+++++++.|.++..    +.. .+..+++++++.++.|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~-~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE-VLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH-HHhhhHHHHHhhcccCcccc
Confidence            43    33445555 7889999999998743    222 45677899999999998873

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.43  E-value=0.17  Score=26.60  Aligned_cols=12  Identities=58%  Similarity=0.775  Sum_probs=4.0

Q ss_pred             CCCEEECCCCcC
Q 003084          161 SLRILDVSFNQL  172 (850)
Q Consensus       161 ~L~~L~Ls~n~i  172 (850)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.60  E-value=0.0095  Score=56.17  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      ..+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|-++...+.+++++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5788999999887 45567888889999999999987 77888888888888998888887 778888999999999999


Q ss_pred             CCcCc
Q 003084          734 YNNLS  738 (850)
Q Consensus       734 ~N~l~  738 (850)
                      +|++.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.58  E-value=0.3  Score=29.04  Aligned_cols=13  Identities=54%  Similarity=0.759  Sum_probs=5.6

Q ss_pred             CCCEEECcCCcCc
Q 003084          702 HIESLDLSYNKLS  714 (850)
Q Consensus       702 ~L~~L~Ls~N~l~  714 (850)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.58  E-value=0.3  Score=29.04  Aligned_cols=13  Identities=54%  Similarity=0.759  Sum_probs=5.6

Q ss_pred             CCCEEECcCCcCc
Q 003084          702 HIESLDLSYNKLS  714 (850)
Q Consensus       702 ~L~~L~Ls~N~l~  714 (850)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.07  E-value=0.34  Score=28.79  Aligned_cols=16  Identities=31%  Similarity=0.569  Sum_probs=9.6

Q ss_pred             CCCCEEECcCCcCCcc
Q 003084          677 TRIQTLNLSHNNLTGT  692 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~  692 (850)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.07  E-value=0.34  Score=28.79  Aligned_cols=16  Identities=31%  Similarity=0.569  Sum_probs=9.6

Q ss_pred             CCCCEEECcCCcCCcc
Q 003084          677 TRIQTLNLSHNNLTGT  692 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~  692 (850)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.00  E-value=0.023  Score=53.70  Aligned_cols=88  Identities=25%  Similarity=0.301  Sum_probs=72.0

Q ss_pred             ccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCC
Q 003084          671 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFAT  750 (850)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~  750 (850)
                      ..+....+.+.||++.|++. ..-..|.-++.|..||++.|++. ..|..+..+..+..++..+|..+. .|..+++.+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCC
Confidence            45677889999999999987 44567888899999999999998 889999999999999999998884 4444677777


Q ss_pred             CCccccCCCCC
Q 003084          751 FNKSSYDGNPF  761 (850)
Q Consensus       751 ~~~~~~~~n~~  761 (850)
                      .......+||+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            77766667663

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.92  E-value=0.28  Score=28.51  Aligned_cols=13  Identities=38%  Similarity=0.611  Sum_probs=4.8

Q ss_pred             CCCEEEcCCCCCc
Q 003084           32 NLEYLTLDDSSLH   44 (850)
Q Consensus        32 ~L~~L~Ls~n~i~   44 (850)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.24  E-value=0.22  Score=46.42  Aligned_cols=59  Identities=22%  Similarity=0.321  Sum_probs=25.5

Q ss_pred             CcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcc-cccchhhHhhhcCCCCcEEEccCCC
Q 003084           58 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA-LNTSFLQIIGESMPSLKYLSLSGST  119 (850)
Q Consensus        58 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~l~~~l~~L~~L~ls~n~  119 (850)
                      ++.++=+++.|....- +.+.+++.++.|.+  .+|. +.+.-.+.++...++|+.|++++|.
T Consensus       103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l--~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSL--ANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             EEEEecCCchHHHHHH-HHHhccchhhhhee--ccccchhhHHHHHhcccccchheeeccCCC
Confidence            4444444444432211 13444444444444  4443 2222233333334566666666553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.93  E-value=0.29  Score=28.45  Aligned_cols=15  Identities=40%  Similarity=0.698  Sum_probs=6.7

Q ss_pred             CCCCEEECcCCcCcc
Q 003084          701 RHIESLDLSYNKLSG  715 (850)
Q Consensus       701 ~~L~~L~Ls~N~l~~  715 (850)
                      ++|+.|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	850
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-52
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-27
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-27
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-11
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  202 bits (513), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 303/683 (44%), Gaps = 82/683 (12%)
Query: 136 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 194 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 210
Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 311
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 267
Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 356
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 357 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 406
                      +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 407 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 484
Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 584
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 485 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 585 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 634
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 635 IFEFTTKNI-AYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687
           +      NI +  Y G              LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 722
Query: 748 FATFNKSSYDGNPFLCGLPLPIC 770
           F TF  + +  NP LCG PLP C
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 32/455 (7%)
Query: 336 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVXXXXXXX 391
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 392 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 449
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 158 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 450 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 509
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL +K + 
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQ 269
Query: 510 ---LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
              L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  G
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 567 EVPIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFS 620
           E+P+                    G +P    N      TL  S NN S P  P      
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL---- 385
Query: 621 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 680
              P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 681 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 740
            L L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 741 IPEWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 773
           IP+W  +           N F   +P  +  CRSL
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 303/683 (44%), Gaps = 82/683 (12%)
Query: 136 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 194 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 213
Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 311
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 270
Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 356
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 357 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 406
                      +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 407 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 487
Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 584
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 488 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 585 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 634
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 635 IFEFTTKNI-AYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687
           +      NI +  Y G              LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725
Query: 748 FATFNKSSYDGNPFLCGLPLPIC 770
           F TF  + +  NP LCG PLP C
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 32/455 (7%)
Query: 336 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVXXXXXXX 391
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 392 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 449
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 161 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 450 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 509
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL +K + 
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQ 272
Query: 510 ---LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
              L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 567 EVPIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFS 620
           E+P+                    G +P    N      TL  S NN S P  P      
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL---- 388
Query: 621 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 680
              P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 681 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 740
            L L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 741 IPEWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 773
           IP+W  +           N F   +P  +  CRSL
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 49/243 (20%)
Query: 351 IPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRN 409
           IPSS  N+ +L FL +   N L G IP  +A                          L  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469
           L +L +   +  G IP  LS+  +L  L  + N LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 470 GPIPVEFCRLDSL-QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ---------- 518
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 519 ------LKEGTFFN------CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
                  K    F+        +L  LDL  N + G++P  +  L  L  LN++ NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 567 EVP 569
           E+P
Sbjct: 283 EIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 137/353 (38%), Gaps = 113/353 (32%)
Query: 439 LNNNNLSG-------KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDN 490
           +NN +LSG        IP  L NL  L  + +   N+L GPIP    +L  L  L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 491 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550
           N+SG++P                    Q+K        +LVTLD SYN L+G++P  I  
Sbjct: 112 NVSGAIPDFL----------------SQIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 551 LSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSS 610
           L  L  +    N + G +P                                 +SY + S 
Sbjct: 148 LPNLVGITFDGNRISGAIP---------------------------------DSYGSFSK 174
Query: 611 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL-----SLLAGLDLSCNKL 665
                 TS +IS  +  +  KI     F   N+A+    R +     S+L G D +  K+
Sbjct: 175 ----LFTSMTIS--RNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 666 VGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
             H+          ++G    +  L+L +N + GT+P   + L+ + SL++S+N L G+I
Sbjct: 227 --HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 770
           P+                               F+ S+Y  N  LCG PLP C
Sbjct: 285 PQG-------------------------GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
            IFS  N++   + G   V  +  S  K S    L  +NN L+  +    G+L  L+ ++
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 463 MPKNHLE--GPIPVEFCRLDSLQILDISDNNIS--GSLPSCFYPLSIKQVHLSKNMLHGQ 518
           +  N L+    I     ++ SLQ LDIS N++S       C +  S+  +++S N+L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411
Query: 519 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569
               T F C    +  LDL  N +  SIP  +  L  L  LN+A N L+  VP
Sbjct: 412 --TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 404 IFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
           +F+  N++ L +    F+  + P S    SS   L    N  +  + +    LK LQ ++
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPS---PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 463 MPKNHLEGPIPVEFC--RLDSLQILDISDNNISGSL--PSCFYPLSIKQVHLSKNMLHGQ 518
           + +N L+    V      + SL+ LD+S N+++      +C +  SI  ++LS NML   
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--- 440
Query: 519 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
              G+ F C    +  LDL  N +  SIP  +  L  L  LN+A N L+ 
Sbjct: 441 --TGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	850
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-165
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  497 bits (1282), Expect = e-165
 Identities = 211/777 (27%), Positives = 331/777 (42%), Gaps = 110/777 (14%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH--ISLLQSIGSIFPSLK 59
            S   L +L L +++   +++         +L  L L  +SL   ++ L S+GS    LK
Sbjct: 74  LSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLK 129

Query: 60  NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 119
            L++S   ++      G     SLE LD+    I+       ++ +    LK+L++SG+ 
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 120 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
           +   S  +    +    +L+ L + +N+    +P+ L + ++L+ LD+S N+L+G  S +
Sbjct: 190 I---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242

Query: 180 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
            +   T ++ L +S+N F  P+   P      L+      N+  GEI +  S      L 
Sbjct: 243 -ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACD-TLT 297

Query: 240 SLSLSSNY--GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 297
            L LS N+  G     P F      L+   LS     GE P   L     L+ L L  + 
Sbjct: 298 GLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 298 LAGPFRLPIHS-HKRLRFLDVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSF 355
            +G     + +    L  LD+S+NNF G I   +      +L    +  N   G IP + 
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 356 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415
            N   L  L LS N L+G IP  L      L  L L  N L+G I   +  ++ L  L+L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 475
           + N   GEIP  LS C++L  + L+NN L+G+IP+W+G L+ L  + +  N   G IP E
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 476 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 535
                SL  LD++ N  +G++P+                          F  S      +
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAM------------------------FKQS----GKI 565

Query: 536 SYNYLNGSIPDWIDGLSQLSHLNLAHN--NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 593
           + N++ G    +I         + A N    +G    QL RL+     +++     G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653
             FDN                                                       
Sbjct: 626 PTFDN-----------------------------------------------------NG 632

Query: 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713
            +  LD+S N L G+IP +IG++  +  LNL HN+++G+IP    +LR +  LDLS NKL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 714 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 770
            G+IP+ +  L  L    ++ NNLSG IPE   QF TF  + +  NP LCG PLP C
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  237 bits (608), Expect = 3e-67
 Identities = 105/404 (25%), Positives = 155/404 (38%), Gaps = 55/404 (13%)

Query: 356 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415
             V  +       N     +   L      LE L LSN+ + G + S      +L  L L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSV-SGFKCSASLTSLDL 107

Query: 416 EGNHFVGEIP--QSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPI 472
             N   G +    SL  CS LK L +++N L           L  L+ + +  N + G  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 473 PVEFCR---LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 529
            V +        L+ L IS N ISG +       +++ + +S N     +      +CS+
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-NLEFLDVSSNNFSTGIPF--LGDCSA 224

Query: 530 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           L  LD+S N L+G     I   ++L  LN++ N   G +P     L  LQ L L++N   
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFT 282

Query: 590 GLIPSCFDN-----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
           G IP          T L  S N+           F  + P                    
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNH-----------FYGAVPP--------FFGS------- 316

Query: 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLR-H 702
                   SLL  L LS N   G +P   +  +  ++ L+LS N  +G +P + +NL   
Sbjct: 317 -------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 703 IESLDLSYNKLSGKIPRQL--VDLNTLAIFIVAYNNLSGKIPEW 744
           + +LDLS N  SG I   L     NTL    +  N  +GKIP  
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 4e-32
 Identities = 87/400 (21%), Positives = 132/400 (33%), Gaps = 117/400 (29%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           +GS   L  L L  N     +   QEL     LE L LD + L        G I   L N
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLT-------GEIPSGLSN 488

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
            +                   +L  + +       N                  L+G   
Sbjct: 489 CT-------------------NLNWISLSN-----N-----------------RLTGE-- 505

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
                  + + +  L +L  L + NN   G++P  L +  SL  LD++ N   G+I ++ 
Sbjct: 506 -------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA- 557

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
                                    +F  S         N I G+      +      K 
Sbjct: 558 -------------------------MFKQS----GKIAANFIAGKR--YVYIKNDGMKKE 586

Query: 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
              + N                        ++  G     L    +      + +    G
Sbjct: 587 CHGAGN-----------------------LLEFQGIRSEQLN-RLSTRNPCNITSRVYGG 622

Query: 301 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 360
                  ++  + FLD+S N   G+IP EIG  +P L   N+  N + GSIP   G++  
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
           L  LDLS+NKL G IP  ++     L  + LSNN+L G I
Sbjct: 682 LNILDLSSNKLDGRIPQAMS-ALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 675 NLTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 731
              ++ +++LS   L      +  +  +L  +ESL LS + ++G +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 732 VAYNNLSGKIPEW 744
           ++ N+LSG +   
Sbjct: 107 LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  288 bits (738), Expect = 3e-86
 Identities = 121/706 (17%), Positives = 225/706 (31%), Gaps = 94/706 (13%)

Query: 80  FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 137
             ++  L++   ++      +F          L  L +  +T+    S++  +    L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-----TRYSQLTSLDVGFNTI----SKLEPELCQKLPM 74

Query: 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
           L+ L + +N+L        A  T+L  L +  N +   I ++P V   ++  L LS+N  
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133

Query: 198 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 257
                L        L+     NN+I    +E   +     LK L LSSN       P   
Sbjct: 134 SS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCF 191

Query: 258 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 317
           +    L    L+++++       L                          ++  +R L +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSL 229

Query: 318 SNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 376
           SN+            +   +L   ++S N L+     SF  +  L++  L  N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 377 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436
             L     N+ +L+L  +                    +           S      L+ 
Sbjct: 290 HSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE----FCRLDSLQILDISDNNI 492
           L + +N++ G        L  L+++ +  +                   L IL+++ N I
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 493 SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 551
           S      F  L  ++ + L  N +  +L    +    ++  + LSYN       +    +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 552 SQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 605
             L  L L    L+     P     L  L +LDLS+NN+  +     +       L   +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
           NN                         L             Y  + LS L  L+L  N  
Sbjct: 514 NN-------------------------LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 666 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD-L 724
                    +L  ++ ++L  NNL       F+N   ++SL+L  N ++    +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 725 NTLAIFIVAYNNLSGKIP--EWTAQFA--TFNKSSYDGNPFLCGLP 766
             L    + +N          W   +   T        + +LC  P
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (673), Expect = 5e-77
 Identities = 113/615 (18%), Positives = 208/615 (33%), Gaps = 48/615 (7%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               ++  L+L  N              ++ L  L +  +++     +      P LK L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVL 78

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
           ++   E++ +     F    +L  L +    I               +L  L LS + L 
Sbjct: 79  NLQHNELSQLSDKT-FAFCTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGL- 133

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLRILDVSFNQLTGSISSS 179
              S         L +LQEL + NN ++      L     +SL+ L++S NQ+       
Sbjct: 134 ---SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 180 PLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
               +  +  L L+N      +   L     ++ ++     N++++   N +        
Sbjct: 191 -FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 297
           L  L LS N  + V          +L+   L +  +   F +  L     + +L L    
Sbjct: 250 LTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNL---- 303

Query: 298 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 357
                       +      +S  +            L  L + N+  N + G   + F  
Sbjct: 304 -----------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 358 VIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 414
           +I L++L LSN+  +     +     +    L  L+L+ N +          L +L  L 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 415 LEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--P 471
           L  N    E+  Q      ++  +YL+ N            +  LQ +++ +  L+    
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH-------GQLKEGT 523
            P  F  L +L ILD+S+NNI+         L  ++ + L  N L               
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
               S L  L+L  N  +    +    L +L  ++L  NNL             L+ L+L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 584 SDNNLHGLIPSCFDN 598
             N +  +    F  
Sbjct: 592 QKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (517), Expect = 2e-55
 Identities = 99/604 (16%), Positives = 175/604 (28%), Gaps = 129/604 (21%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               +L  L L +N   A  +   ++   ++L+ L L  + +            P     
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK--------EFSPGC--- 190

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
                          F     L  L +   ++  + +    +  +  S++ LSLS S L 
Sbjct: 191 ---------------FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
           T S+           +L  L +  N+L        A    L    + +N +    S S L
Sbjct: 236 TTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-L 292

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             L ++  L L  +  +  +S                   +    + S        L+ L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSIS----------------LASLPKIDDFSFQWLKC--LEHL 334

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
           ++  N                           I    + +      L++L L        
Sbjct: 335 NMEDN--------------------------DIPGIKSNMFTGLINLKYLSL-------- 360

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
                 S+       ++N  F              L   N++ N +      +F  +  L
Sbjct: 361 ------SNSFTSLRTLTNETFVSL-------AHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF- 420
           + LDL  N++  E+         N+  + LS N       +    + +L+ L+L      
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 421 -VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--------GP 471
            V   P       +L  L L+NNN++      L  L+ L+ + +  N+L         G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 531
                  L  L IL++  N                            +    F +   L 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDE------------------------IPVEVFKDLFELK 563

Query: 532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHG 590
            +DL  N LN       +    L  LNL  N +              L  LD+  N    
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 591 LIPS 594
              S
Sbjct: 624 TCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  201 bits (514), Expect = 4e-55
 Identities = 80/427 (18%), Positives = 149/427 (34%), Gaps = 51/427 (11%)

Query: 336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 395
           S    + S   L   +P        +  L+L++N+L      +       L  L +  N+
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNT 60

Query: 396 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455
           +          L  L+ L L+ N       ++ + C++L  L+L +N++           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVHLSK 512
           K L  + +  N L         +L++LQ L +S+N I              S+K++ LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI---DGLSQLSHLNLAHNNLEGEVP 569
           N +      G F     L  L L+   L  S+ + +      + + +L+L+++ L     
Sbjct: 181 NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 570 --IQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 623
                 +   L +LDLS NNL+ +    F            YNN                
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------- 283

Query: 624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSL---LAGLDLSCNKLVGHIPPQIGNLTRIQ 680
                      I    + ++   +  R L+L        +S   L          L  ++
Sbjct: 284 -----------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 681 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV----DLNTLAIFIVAYNN 736
            LN+  N++ G     F+ L +++ L LS +  S +            + L I  +  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 737 LSGKIPE 743
           +S    +
Sbjct: 393 ISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 2e-19
 Identities = 72/331 (21%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-------------SSLHISLL 48
                L  L++E N+     +         NL+YL+L +              SL  S L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 49  Q-------SIGSIFP-------SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 94
                    I  I          L+ L +   E+   L+GQ +   +++  + + + +  
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY- 442

Query: 95  LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 154
                 +     +PSL+ L L    L  N          PL +L  L + NN++      
Sbjct: 443 --LQLTRNSFALVPSLQRLMLRRVAL-KNVDSSPSP-FQPLRNLTILDLSNNNIANINDD 498

Query: 155 CLANTTSLRILDVSFNQLT-------GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF 207
            L     L ILD+  N L               L  L+ +  L L +N F   + +E   
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFK 557

Query: 208 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 267
           +  +LKI D   N +N           +  LKSL+L  N   SV    F      L E +
Sbjct: 558 DLFELKIIDLGLNNLNTLPAS--VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 268 LSH------IKMIGEFPNWLLENNTKLEFLY 292
           +         + I  F NW+ E +T +  L 
Sbjct: 616 MRFNPFDCTCESIAWFVNWINETHTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 4e-15
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 56/192 (29%)

Query: 553 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 612
                + +H  L  +VP  L     + +L+L+ N L  L  + F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 613 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 672
                                                   S L  LD+  N +    P  
Sbjct: 48  ---------------------------------------YSQLTSLDVGFNTISKLEPEL 68

Query: 673 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 732
              L  ++ LNL HN L+     TF+   ++  L L  N +        V    L    +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 733 AYNNLSGKIPEW 744
           ++N LS      
Sbjct: 129 SHNGLSSTKLGT 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  253 bits (647), Expect = 8e-74
 Identities = 80/611 (13%), Positives = 180/611 (29%), Gaps = 91/611 (14%)

Query: 156 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP---LFNHSKL 212
           L +   +  L +     +G +  + +  LT +E L L ++  ++   L     +  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 213 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 272
           +              +         L    ++S+     +  K      +  +       
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKSSRITLKDTQIGQLSNN 194

Query: 273 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 332
            I      ++   TKL   Y+ N             ++                 ++  +
Sbjct: 195 -ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDN 247

Query: 333 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM-------CCVN 385
            L  L    +        +P+    +  +Q ++++ N+                      
Sbjct: 248 -LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 386 LEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444
           ++ + +  N+LK   + + +  ++ L  L    N   G++P +      L  L L  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 445 SGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 503
           +     + G  + ++++    N L+  P   +   +  +  +D S N I       F PL
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 504 --------SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-------SIPDWI 548
                   ++  ++LS N +    KE  F   S L +++L  N L            +  
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 549 DGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
                L+ ++L  N L       +   L  L  +DLS N+         +++TL      
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL------ 538

Query: 608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 667
                                                     +   +    D   N+ + 
Sbjct: 539 ------------------------------------------KGFGIRNQRDAQGNRTLR 556

Query: 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
             P  I     +  L +  N++         N+     LD+  N         +      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEA 613

Query: 728 AIFIVAYNNLS 738
            ++++ Y+   
Sbjct: 614 GMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (573), Expect = 2e-63
 Identities = 76/542 (14%), Positives = 171/542 (31%), Gaps = 75/542 (13%)

Query: 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL---LENNTKLEFLYL 293
           ++  LSL    G S   P  +    EL+   L           +    +  N   E    
Sbjct: 82  RVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 294 VNDSLAGPF--RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 351
           +       F    P      L    ++++  Q  I      I           N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 352 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 411
             +   +  L+   + N+    E        C   E  +            +  +L++L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 412 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL--------SGKIPRWLGNLKGLQHIVM 463
            + +     + ++P  L     ++ + +  N            +        + +Q I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 464 PKNHL-EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 522
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 523 TFFNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHNNLEG-------EVPIQLC 573
                  +  L  ++N L   IP+      +S +S ++ ++N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 574 RLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVE 629
           +   +  ++LS+N +       F      ++++   N              ++    +  
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-------------LTEIPKNSL 477

Query: 630 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHN 687
           K   E F             +   LL  +DL  NKL   +        L  +  ++LS+N
Sbjct: 478 KDENENF-------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 688 NLTGTIPLTFSNLRHIESL------DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741
           + +   P    N   ++        D   N+   + P  +    +L    +  N++   +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 742 PE 743
            E
Sbjct: 582 NE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (556), Expect = 3e-61
 Identities = 61/470 (12%), Positives = 151/470 (32%), Gaps = 72/470 (15%)

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFL 361
           ++S+ R+  L +      G +P  IG  L  L    +  +          P      +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 362 QFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
           +              D+       +L    ++++  +  I            +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
              + +++ + + L+  Y+ N+    +        +  ++             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 481 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVT 532
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 533 LDLSYNYL-NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
           + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +  +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 592 IPSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
             +    T     L  ++N                         I  IF+  +       
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY---------------------IPNIFDAKS------- 400

Query: 648 QGRVLSLLAGLDLSCNKLVG-------HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 700
               +S+++ +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401 ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 701 RHIESLDLSYNKLSG-------KIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
             + S++L  N L+               +   L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (555), Expect = 4e-61
 Identities = 82/545 (15%), Positives = 180/545 (33%), Gaps = 62/545 (11%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLR 163
            +  L+ L+L       N      +G+      ++        + +        + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 164 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI 222
              ++ +    SI  S         ++   +N+   +  ++      +KL+ F   N+  
Sbjct: 163 KDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPF 218

Query: 223 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 282
             E          ++ ++   +  Y    T      +  +L + E+ +   + + P +L 
Sbjct: 219 VAENICE-----AWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 283 ENNTKLEFLYLVNDSLAGPFRLP--------IHSHKRLRFLDVSNNNFQ-GHIPVEIGDI 333
           +   +++ + +  +      +L             ++++ + +  NN +   +   +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK- 328

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           +  L       N L+G +P+ FG+ I L  L+L+ N++T  IP +       +E LS ++
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 394 NSLKG-HIFSRIFSLRNLRWLLLEGNHFVG-------EIPQSLSKCSSLKGLYLNNNNLS 445
           N LK         S+  +  +    N            +  +  K  ++  + L+NN +S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 446 GKIPRWLGNLKGLQHIVMPKNHLEG-------PIPVEFCRLDSLQILDISDNNISGSLPS 498
                       L  I +  N L              F     L  +D+  N ++  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505

Query: 499 CFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTL------DLSYNYLNGSIPDWID 549
            F       +  + LS N       +    N S+L         D   N      P+ I 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 550 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESY 605
               L+ L +  N++   V  ++     + +LD+ DN    +  S              Y
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 606 NNNSS 610
           +    
Sbjct: 621 DKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (533), Expect = 4e-58
 Identities = 70/515 (13%), Positives = 156/515 (30%), Gaps = 88/515 (17%)

Query: 269 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 328
             + M G  P   L +N ++  L L                              G +P 
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSL------------------------EGFGASGRVPD 99

Query: 329 EIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC-C 383
            IG  L  L    +  +          P      +  +              D+      
Sbjct: 100 AIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 443
            +L    ++++  +  I            +    N+    + +++ + + L+  Y+ N+ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSP 217

Query: 444 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 503
              +        +  ++             +++  L  L  +++ +      LP+    L
Sbjct: 218 FVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 504 -SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYL-NGSIPDWIDGLSQL 554
             ++ ++++ N      +                +  + + YN L    +   +  + +L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESYNNNSS 610
             L   +N LEG++P       +L  L+L+ N +  +  +    T     L  ++N    
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 611 -PDKPFKTSFS-----------ISG-PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
            P+     S S           I      + +      F+                 ++ 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------VSS 437

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG-------TIPLTFSNLRHIESLDLSY 710
           ++LS N++           + + ++NL  N LT             F N   + S+DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 711 NKLSGKIPRQLVDLN--TLAIFIVAYNNLSGKIPE 743
           NKL+  +           L    ++YN+ S   P 
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (506), Expect = 2e-54
 Identities = 78/610 (12%), Positives = 164/610 (26%), Gaps = 133/610 (21%)

Query: 2   GSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 59
           G    L  L L S+           + +    + E             +    +      
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK-------MRMHYQKTFVDYDP 154

Query: 60  NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES---MPSLKYLSLS 116
               S    + + S       K    + ++  +I   ++ +  + ++   +  L+   + 
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

Query: 117 GSTLGT---------------NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 161
            S                      +  D     L  L ++ + N      LP  L     
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 162 LRILDVSFNQLTGSISS-------SPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSK 211
           +++++V+ N+              +       I+ + +  N+ +   +  SL       K
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKK 331

Query: 212 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 271
           L + +   N++ G++    S     +L SL+L+ N                         
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEI---KLASLNLAYN------------------------- 363

Query: 272 KMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 330
             I E P        ++E L   ++ L   P      S   +  +D S N          
Sbjct: 364 -QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 331 GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 390
                               +  +    I +  ++LSNN+++    +  +     L  ++
Sbjct: 423 D------------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSIN 463

Query: 391 LSNNSLKG-------HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNN 441
           L  N L                +   L  + L  N     +      +    L G+ L+ 
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 442 NNLSGKIPRWLGNLKGLQHIVMP------KNHLEGPIPVEFCRLDSLQILDISDNNISGS 495
           N+ S   P    N   L+   +        N      P       SL  L I  N+I   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K 580

Query: 496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 555
           +                                ++  LD+  N        ++    +  
Sbjct: 581 VNEKI--------------------------TPNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 556 HLNLAHNNLE 565
              L ++  +
Sbjct: 615 MYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (464), Expect = 9e-49
 Identities = 56/421 (13%), Positives = 126/421 (29%), Gaps = 79/421 (18%)

Query: 340 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG- 398
           FN  ++        S  +   +  L L     +G +PD +      LE L+L ++  K  
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 399 ---HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNNLSGKIPRWLG 453
                   I +  +         H+         +   S L    +N++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
                  I    N++   +     RL  L+   + ++          +       +    
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYA 235

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL--------E 565
             +    +  + N   L  +++        +P ++  L ++  +N+A N          +
Sbjct: 236 QQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 566 GEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 624
            +         ++Q++ +  NNL    + +                              
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-------------------------- 328

Query: 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 684
                                      +  L  L+   N+L G   P  G+  ++ +LNL
Sbjct: 329 ---------------------------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNL 360

Query: 685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAIFIVAYNNLSGKIP 742
           ++N +T            +E+L  ++NKL   IP       ++ ++    +YN +     
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 743 E 743
           +
Sbjct: 420 K 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 6e-20
 Identities = 25/227 (11%), Positives = 64/227 (28%), Gaps = 13/227 (5%)

Query: 522 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 581
           G      +    +   +         ++   +++ L+L      G VP  + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 582 DLSDNNLHG----LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 637
            L  +          P         E           ++ +F    P+      I +   
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM---HYQKTFVDYDPREDFSDLIKDCIN 167

Query: 638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 697
              +  +     R+      +    N +   +   +  LT+++   + ++          
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 698 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 744
                    +  Y +       +  +L  L    V       K+P +
Sbjct: 227 WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  241 bits (618), Expect = 5e-70
 Identities = 115/726 (15%), Positives = 212/726 (29%), Gaps = 156/726 (21%)

Query: 32  NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 91
            +  +T     L  +  +   ++  S KNL +S   +  + S   F  F  L+ LD+   
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 92  RIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 148
                     I   +   +  L  L L+G+ +      +       L+ LQ+L     +L
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNL 112

Query: 149 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPL 206
                + + +  +L+ L+V+ N +          +LT++E L LS+N  +      L  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 207 FN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 265
                     D   N +N     +       +L  L+L +N                   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNN------------------- 210

Query: 266 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH---KRLRFLDVSNNNF 322
                           ++    LE   LV         L        + L  L +     
Sbjct: 211 ------FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 382
                                ++     I   F  +  +    L +  +           
Sbjct: 265 A-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--- 302

Query: 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 442
               + L L N         ++ SL+ L +   +G         S     SL+ L L+ N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 443 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 502
            LS                       +G          SL+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 562
             ++ +    + L    +   F +  +L+ LD+S+ +   +     +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 563 NLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 621
           + +    P     L  L  LDLS   L  L P+ F++                       
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------------------- 492

Query: 622 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 681
                                         LS L  L++S N            L  +Q 
Sbjct: 493 ------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 682 LNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIP-RQLVD-LNTLAIFIVAYNNLS 738
           L+ S N++  +      +    +  L+L+ N  +     +  +  +      +V    + 
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 739 GKIPEW 744
              P  
Sbjct: 583 CATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (543), Expect = 1e-59
 Identities = 118/577 (20%), Positives = 207/577 (35%), Gaps = 45/577 (7%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            SFP L  L L                + ++L  L L  + +    L +      SL+ L
Sbjct: 49  FSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKL 105

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSGS 118
                 +   L      H K+L+ L++         L   F      ++ +L++L LS +
Sbjct: 106 VAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSN 159

Query: 119 TLGTNSSRILDQGLCPLAHLQ----ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
            +      I    L  L  +      L +  N +    P        L  L +  N  + 
Sbjct: 160 KI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSL 214

Query: 175 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS--KLKIFDAKNNEING----EINE 228
           ++  + +  L  +E  RL    FR   +LE     +   L     +   +        + 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 229 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 288
                    + S SL S   + V    + +    L   EL + K  G+FP   L++  +L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL---ELVNCK-FGQFPTLKLKSLKRL 330

Query: 289 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN--NFQGHIPVEIGDILPSLVYFNISMNA 346
            F      +      LP      L FLD+S N  +F+G           SL Y ++S N 
Sbjct: 331 TFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNG 384

Query: 347 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 406
           +  ++ S+F  +  L+ LD  ++ L       + +   NL +L +S+   +         
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 407 LRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465
           L +L  L + GN F     P   ++  +L  L L+   L    P    +L  LQ + M  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGT 523
           N+        +  L+SLQ+LD S N+I  S          S+  ++L++N      +  +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 524 FFN-CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNL 559
           F         L +    +  + P    G+  +  LN+
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (487), Expect = 5e-52
 Identities = 75/446 (16%), Positives = 142/446 (31%), Gaps = 58/446 (13%)

Query: 316 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 375
                NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 376 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 435
                    +L  L L+ N ++         L +L+ L+    +        +    +LK
Sbjct: 69  DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 436 GLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISDN 490
            L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 491 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS------I 544
            ++   P  F  + + ++ L  N     + +      + L    L               
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 545 PDWIDGLSQLSHLNLAHNNLE---GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
              ++GL  L+        L+    ++      L  +    L    +  +    ++    
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 602 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
           H    N      P                                     L L +   L+
Sbjct: 308 HLELVNCKFGQFPT------------------------------------LKLKSLKRLT 331

Query: 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLT--GTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
                G       +L  ++ L+LS N L+  G    +      ++ LDLS+N +   +  
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 720 QLVDLNTLAIFIVAYNNLSGKIPEWT 745
             + L  L      ++NL        
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  233 bits (596), Expect = 7e-67
 Identities = 105/533 (19%), Positives = 189/533 (35%), Gaps = 29/533 (5%)

Query: 80  FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 137
             S E L+  F  +    NT+F       + +L +L L+   +      I +        
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTRCQI----YWIHEDTFQSQHR 82

Query: 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
           L  L +  N L       L+   +L+ L      ++ SI   PL +  ++E L L +NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

Query: 198 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 257
              + L   F   KLK+ D +NN I+    E  S   +    SL+L+ N  D        
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN--DIAGIEPGA 198

Query: 258 YHQHELKEAELSHIKMIGEFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKR--LRF 314
           +     +       + +      L  +    L      +                  +  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           +++  + F   I          L   +++   L   +PS    +  L+ L LS NK    
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN- 315

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH--FVGEIPQSLSKC 431
           +    A    +L  LS+  N+ +  + +     L NLR L L  +           L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDN 490
           S L+ L L+ N               L+ + +    L+       F  L  L++L++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 491 NISGSLPSCFYPL-SIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
            +  S    F  L +++ ++L  N        K  +      L  L LS+  L+      
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
              L  ++H++L+HN L       L  L  + L +L+ N++  ++PS     +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (579), Expect = 2e-64
 Identities = 118/592 (19%), Positives = 201/592 (33%), Gaps = 60/592 (10%)

Query: 163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 222
           +  +     L       P     S E L  S N     +          L   D    +I
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 223 NGEINES-HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 281
                ++  S     +L +L L++N    +     L     LK         I       
Sbjct: 70  YWIHEDTFQSQH---RLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTG-ISSIDFIP 124

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL--VY 339
           L N   LE LYL ++ ++          ++L+ LD  NN    ++  E    L     + 
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLS 183

Query: 340 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKG 398
            N++ N +   I     +    Q L+    +    I   L    + +L   +  +   + 
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE- 241

Query: 399 HIFSRIF---SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455
            I   +F      ++  + L+ ++F      +    S L+ L L   +LS ++P  L  L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKN 513
             L+ +V+  N  E    +      SL  L I  N     L + C   L +++++ LS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 514 MLHG-QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQ 571
            +           N S L +L+LSYN       +      QL  L+LA   L+  +    
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 572 LCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGS 627
              L+ L++L+LS + L       FD       L+   N+    +     S         
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------ 474

Query: 628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687
                                   L  L  L LS   L         +L  +  ++LSHN
Sbjct: 475 ------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739
            LT +     S+L+ I  L+L+ N +S  +P  L  L+      +  N L  
Sbjct: 511 RLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (553), Expect = 6e-61
 Identities = 111/577 (19%), Positives = 199/577 (34%), Gaps = 59/577 (10%)

Query: 137 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 196
             + L    N L        +   +L  LD++  Q+   I          ++ L L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 197 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 256
               ++   L     LK        I+        L  +  L+SL L SN+  S+  PK 
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 257 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VNDSLAGPFRLPIHSHKRLRFL 315
              +  LK  +  +   I       + +  +   L L +N +               + L
Sbjct: 150 FPTEK-LKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 316 DVSNNNFQGHIPVEI-GDILPSLVYFNISMNALDGSIPSSFGNV--IFLQFLDLSNNKLT 372
           +         I   +    + SL          +   P+ F  +  + ++ ++L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 432
               +    C   L+ L L+   L   + S +  L  L+ L+L  N F      S S   
Sbjct: 268 NISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 433 SLKGLYLNNNNLSGKI-PRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISD 489
           SL  L +  N    ++    L NL+ L+ + +  + +E      ++   L  LQ L++S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 490 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
           N         F     ++ + L+   L  +  +  F N   L  L+LS++ L+ S     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 549 DGLSQLSHLNLAHNNLEGEVPIQ---LCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 601
           DGL  L HLNL  N+       +   L  L +L++L LS  +L  +    F +      +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 602 HESYNN-NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 660
             S+N   SS  +       I                                    L+L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-----------------------------------LNL 530

Query: 661 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 697
           + N +   +P  +  L++ +T+NL  N L  T    +
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (516), Expect = 5e-56
 Identities = 90/512 (17%), Positives = 163/512 (31%), Gaps = 51/512 (9%)

Query: 250 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 309
           + +  +    +   K     ++  + E P  L  +    E L    + L           
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLG-LNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRL 56

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
             L FLD++                  L    ++ N L     ++      L+ L     
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 370 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 429
            ++      L      LE L L +N +      + F    L+ L  + N       + +S
Sbjct: 116 GISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 430 KCSSLKGLYLN-NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP--VEFCRLDSLQILD 486
                  L LN N N    I     +    Q +          I   ++   + SL +  
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 487 ISDNNISGSLPSCF---YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543
             D +     P+ F     +S++ ++L K+     +   TF   S L  LDL+  +L+  
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-E 292

Query: 544 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDN---- 598
           +P  + GLS L  L L+ N  E    I       L  L +  N     + + C +N    
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
             L  S+++  + D       +                               LS L  L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRN-------------------------------LSHLQSL 381

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT-FSNLRHIESLDLSYNKLSGKI 717
           +LS N+ +           +++ L+L+   L      + F NL  ++ L+LS++ L    
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 749
            +    L  L    +  N+      + T    
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (463), Expect = 8e-49
 Identities = 103/596 (17%), Positives = 192/596 (32%), Gaps = 55/596 (9%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               +L  L L           T    +   L+ L L  + L   + ++  S   +LK+L
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLI-FMAETALSGPKALKHL 110

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
                 ++  +      + K+LE L +    I   +S     G     LK L    + + 
Sbjct: 111 FFIQTGISS-IDFIPLHNQKTLESLYLGSNHI---SSIKLPKGFPTEKLKVLDFQNNAI- 165

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLR-GSLPWCLANTTSLRILDVSFNQLTG-SISSS 179
                +  + +  L     L ++ N      +     ++   + L+    Q         
Sbjct: 166 ---HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 180 PLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINES-HSLTPKFQ 237
               + S+      +     I  ++        ++  + + +      + + H  +    
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS---G 279

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV-ND 296
           L+ L L++ +   +  P  L     LK+  LS  K           N   L  L +  N 
Sbjct: 280 LQELDLTATHLSEL--PSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNT 336

Query: 297 SLAGPFRLPIHSHKRLRFLDVSNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSF 355
                    + + + LR LD+S+++ +           L  L   N+S N        +F
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 356 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415
                L+ LDL+  +L  +           L+ L+LS++ L          L  L+ L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 416 EGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 472
           +GNHF     Q   SL     L+ L L+  +LS        +LK                
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK---------------- 500

Query: 473 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 532
                    +  +D+S N ++ S       L    ++L+ N +   +        S   T
Sbjct: 501 --------MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRT 551

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
           ++L  N L+ +       +  L         LE            L+ + LSD  L
Sbjct: 552 INLRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 1e-19
 Identities = 30/243 (12%), Positives = 58/243 (23%), Gaps = 54/243 (22%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           +S   L+ S+N L          L  L+ L+L    +           ++L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
           L  +  +                                                     
Sbjct: 93  LIFMAETALSG------------------------------------------------- 103

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
                  L  L      +       + N   +++L L  N+++            ++ LD
Sbjct: 104 ----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS-GKIPEWTAQFATFNKSSYDGNPFLCGLP 766
              N +       +  L       +  N      I       A F   ++ G   L  + 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 767 LPI 769
             +
Sbjct: 220 KGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 54/300 (18%), Positives = 102/300 (34%), Gaps = 23/300 (7%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           +    +L  L L +N F      +    NF +L +L++  ++  + L         +L+ 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 61  LSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 119
           L +S  ++           +   L+ L++ +       S      +  P L+ L L+ + 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP---LSLKTEAFKECPQLELLDLAFTR 411

Query: 120 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
           L    ++        L  L+ L + ++ L  S         +L+ L++  N         
Sbjct: 412 LKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 180 P--LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
              L  L  +E L LS       +      +   +   D  +N +     E+ S      
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH------IKMIGEFPNWLLENNTKLEFL 291
              L+L+SN+   +  P  L    + +   L           I  F  W  EN  KLE  
Sbjct: 528 ---LNLASNHISII-LPSLLPILSQQRTINLRQNPLDCTCSNIY-FLEWYKENMQKLEDT 582

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  221 bits (566), Expect = 7e-66
 Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 33/300 (11%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS--IPSSFGNVIFLQFLDLSN-NKL 371
            D  N  + G +          +   ++S   L     IPSS  N+ +L FL +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 431
            G IP  +A     L +L +++ ++ G I   +  ++ L  L    N   G +P S+S  
Sbjct: 90  VGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGL-QHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 490
            +L G+  + N +SG IP   G+   L   + + +N L G IP  F  L +L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 491 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550
            + G                             F +  +   + L+ N L   +   +  
Sbjct: 208 MLEGDASV------------------------LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNS 609
              L+ L+L +N + G +P  L +L  L  L++S NNL G IP   +       +Y NN 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (515), Expect = 1e-58
 Identities = 71/378 (18%), Positives = 124/378 (32%), Gaps = 108/378 (28%)

Query: 423 EIPQSLSKCSSL----KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEF 476
           +I + L   ++L          N    G +         + ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 477 CRLDSLQILDISD-NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 535
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 595
           ++  ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
             + +S N+L G IPP   NL  +  ++LS N L G   + F + ++ + + L+ N L+ 
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 716 KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ-----------------------FATFN 752
            +  ++     L    +  N + G +P+   Q                          F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 753 KSSYDGNPFLCGLPLPIC 770
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (513), Expect = 2e-58
 Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 63/337 (18%)

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG--HIFSRIFSLRNLRWLLLEG-NHF 420
            D  N    G + D        +  L LS  +L     I S + +L  L +L + G N+ 
Sbjct: 31  TDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
           VG IP +++K + L  LY+ + N+SG IP +L  +K L  +    N L G +P     L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 481 SLQILDISDNNISGSLPSCFYPLS--IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
           +L  +    N ISG++P  +   S     + +S+N L G++   TF N  +L  +DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRN 207

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
            L G              ++LA N+L  ++  ++     L  LDL +N ++G +P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                                L  L  L
Sbjct: 267 -----------------------------------------------------LKFLHSL 273

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 695
           ++S N L G I PQ GNL R      ++N      PL
Sbjct: 274 NVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 1e-51
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 286 TKLEFLYLVND-SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 344
             L FLY+    +L GP    I    +L +L +++ N  G IP  +   + +LV  + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 345 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 404
           NAL G++P S  ++  L  +    N+++G IPD           +++S N L G I    
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 405 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
            +L NL ++ L  N   G+         + + ++L  N+L+  + + +G  K L  + + 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498
            N + G +P    +L  L  L++S NN+ G +P 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (401), Expect = 5e-43
 Identities = 74/358 (20%), Positives = 113/358 (31%), Gaps = 83/358 (23%)

Query: 145 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV-HLTSIEELRLSNNHFRIPVSL 203
           N    G L      T  +  LD+S   L         + +L  +  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 204 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 263
                           N + G I    ++    QL  L ++                   
Sbjct: 86  ---------------INNLVGPI--PPAIAKLTQLHYLYITHT----------------- 111

Query: 264 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 323
                    + G  P++ L     L  L    ++L+G     I S   L  +    N   
Sbjct: 112 --------NVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 324 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 383
           G IP   G          IS N L G IP +F N + L F+DLS N L G+         
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDAS------- 214

Query: 384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 443
                                 S +N + + L  N    ++   +    +L GL L NN 
Sbjct: 215 ------------------VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 444 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI--SGSLPSC 499
           + G +P+ L  LK L  + +  N+L G IP     L    +   ++N       LP+C
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (314), Expect = 2e-31
 Identities = 57/329 (17%), Positives = 113/329 (34%), Gaps = 86/329 (26%)

Query: 79  HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG---------STLGTNSSRILD 129
               + +LD+    +         +  ++P L +L + G           +         
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAK------- 99

Query: 130 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 189
                L  L  LYI + ++ G++P  L+   +L  LD S+N L+G++  S +  L ++  
Sbjct: 100 -----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG 153

Query: 190 LRLSNNHF--RIPVSLEPLFNHSKLKIF-DAKNNEINGEINESHSLTPKFQLKSLSLSSN 246
           +    N     IP S     + SKL        N + G+I  + +      L  + LS N
Sbjct: 154 ITFDGNRISGAIPDS---YGSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRN 207

Query: 247 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 306
                                     + G+       ++   + ++L             
Sbjct: 208 -------------------------MLEGDASVLFG-SDKNTQKIHL------------- 228

Query: 307 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 366
                      + N+    +  ++G    +L   ++  N + G++P     + FL  L++
Sbjct: 229 -----------AKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 367 SNNKLTGEIPDHLAMCCVNLEFLSLSNNS 395
           S N L GEIP    +     +  + +NN 
Sbjct: 276 SFNNLCGEIPQGGNL--QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 97.2 bits (243), Expect = 3e-22
 Identities = 66/383 (17%), Positives = 112/383 (29%), Gaps = 127/383 (33%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
                 +N L L   N          L N   L +L +   + ++      G I P++  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLV-----GPIPPAIAK 99

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG--- 117
           L+                    L +L                       + + ++SG   
Sbjct: 100 LT-------------------QLHYLY----------------------ITHTNVSGAIP 118

Query: 118 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 177
             L              +  L  L    N L G+LP  +++  +L  +    N+++G+I 
Sbjct: 119 DFLSQ------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 178 SSPLVHLTS-IEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 234
            S     +     + +S N    +IP +                                
Sbjct: 167 DS-YGSFSKLFTSMTISRNRLTGKIPPTFA------------------------------ 195

Query: 235 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 294
              L  + LS N                          + G+       ++   + ++L 
Sbjct: 196 NLNLAFVDLSRN-------------------------MLEGDASVLFG-SDKNTQKIHLA 229

Query: 295 NDSLAGPFRLP-IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 353
            +SLA    L  +   K L  LD+ NN   G +P  +   L  L   N+S N L G IP 
Sbjct: 230 KNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQ 286

Query: 354 SFGNVIFLQFLDLSNNKLTGEIP 376
             GN+        +NNK     P
Sbjct: 287 G-GNLQRFDVSAYANNKCLCGSP 308

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  228 bits (582), Expect = 3e-63
 Identities = 75/618 (12%), Positives = 168/618 (27%), Gaps = 83/618 (13%)

Query: 144 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 203
           + +         L N   +  L ++     G +  + +  LT ++ L    +   +   L
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRL 365

Query: 204 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 263
                 +     + K+               +  L  L   +   +    P     +  L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 264 KEAELSHIK-MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 322
           K+ ++ ++   I      + +  TKL+ +Y  N           +        +      
Sbjct: 426 KDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQ 479

Query: 323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM- 381
             +  +   + L  L    +        +P    ++  LQ L+++ N+            
Sbjct: 480 YENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 382 -------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
                      ++   +  N+L+    S  +  +  L  L    N       ++      
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNI 492
           L  L L+ N +      +      ++ +    N L+  P       +  +  +D S N I
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 493 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 552
                +    +                     +   +  T+ LSYN +     +     S
Sbjct: 657 GSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 553 QLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-----TT 600
            +S + L++N +                    L  +DL  N L  L            + 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 660
           +  SYN                             F         + Q +   +    D 
Sbjct: 758 MDVSYNC-------------------------FSSFP---TQPLNSSQLKAFGIRHQRDA 789

Query: 661 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 720
             N+++   P  I     +  L +  N++          L     LD++ N         
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTS 846

Query: 721 LVDLNTLAIFIVAYNNLS 738
           +       ++++ Y+   
Sbjct: 847 VCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  226 bits (577), Expect = 1e-62
 Identities = 88/661 (13%), Positives = 176/661 (26%), Gaps = 133/661 (20%)

Query: 132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191
           L     +  L +     +G +P  +   T L++L    +  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 251
              +  R+      L    +L + D   +     IN +  + P  +   +SL      ++
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQD----AINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 252 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 311
           T                     I       ++  TKL+ +Y  N           +    
Sbjct: 434 TN-------------------RITFISKA-IQRLTKLQIIYFANSPFTY-----DNIAVD 468

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
               +        +  +   + L  L    +        +P    ++  LQ L+++ N+ 
Sbjct: 469 WEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 372 TGEIPDHLAM--------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVG 422
                                 ++   +  N+L+    S  +  +  L  L    N    
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 481
              ++      L  L L+ N +      +      ++ +    N L+  P       +  
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           +  +D S N I     +    +                     +   +  T+ LSYN + 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQ 686

Query: 542 GSIPDWIDGLSQLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPS 594
               +     S +S + L++N +                    L  +DL  N L  L   
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 654
               T                                                    L  
Sbjct: 747 FRATT----------------------------------------------------LPY 754

Query: 655 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDL 708
           L+ +D+S N      P Q  N ++++   + H      N +    P   +    +  L +
Sbjct: 755 LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 709 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS--YDGNPFLCGLP 766
             N +  K+  +L     L I  +A N            +         YD    + G  
Sbjct: 814 GSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

Query: 767 L 767
            
Sbjct: 871 A 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  202 bits (515), Expect = 2e-54
 Identities = 86/612 (14%), Positives = 177/612 (28%), Gaps = 78/612 (12%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           + +   +  L L        +     +   T L+ L+    S  +   +  G    +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDM 375

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
                  +          + + L   D+    I  N     I  +S  SLK   +   T 
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT- 434

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
             N    + + +  L  LQ +Y  N+                   +  + +   +   S 
Sbjct: 435 --NRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELS- 486

Query: 181 LVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 238
             +L  + ++ L N     ++P  L  L    +L+  +   N            T     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWT----- 538

Query: 239 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
                                  +++   + +  +     +  L+   KL  L  V++ +
Sbjct: 539 -------------RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS--SFG 356
                    ++ +L  L +  N  +  IP +       +     S N L   IP+  +  
Sbjct: 586 RHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641

Query: 357 NVIFLQFLDLSNNKLTGEIPDHLA----MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
           +V  +  +D S NK+  E  +          +N   ++LS N ++        +   +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 413 LLLEGNHF-------VGEIPQSLSKCSSLKGLYLNNNNLSGKIPR--WLGNLKGLQHIVM 463
           ++L  N         +     +      L  + L  N L+  +        L  L ++ +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDV 760

Query: 464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 523
             N      P +      L+   I                         N +  Q     
Sbjct: 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRD-----------------AEGNRILRQWPT-G 801

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
              C SL+ L +  N +   + + +    QL  L++A N         +C   +  +  L
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 584 SDNNLHGLIPSC 595
             +     I  C
Sbjct: 859 LYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (398), Expect = 1e-39
 Identities = 58/446 (13%), Positives = 123/446 (27%), Gaps = 80/446 (17%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
            +   + +     V++ +    +   +++     G +P + G +  L+ L    +  T  
Sbjct: 304 FNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV- 361

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 434
                    +  +      + ++ H                          Q L+    L
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLD-----------------YDQRLNLSDLL 404

Query: 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 494
           +     N  +         +LK  Q I    N +   I     RL  LQI+  +++  + 
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY 462

Query: 495 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 554
                                                  +  Y     +       L  L
Sbjct: 463 DNI-----------------------------AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 614
           + + L +     ++P  L  L +LQ L+++ N          D T L +  +        
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK---- 549

Query: 615 FKTSFSISGPQGSVEKKILEIFEFTT---KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 671
                             ++IF       +    +   + +  L  LD   NK+      
Sbjct: 550 ------------------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 672 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAI 729
             G   ++  L L +N +        +    +E L  S+NKL   IP       +  +  
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 730 FIVAYNNLSGKIPEWTAQFATFNKSS 755
              +YN +  +    +     +   +
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (314), Expect = 2e-29
 Identities = 47/397 (11%), Positives = 110/397 (27%), Gaps = 80/397 (20%)

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           + +   +    I D+ A+  +  E L   N        +      N      E + +  +
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
               L     + GL L      G++P                            +L  L+
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPD------------------------AIGQLTELK 350

Query: 484 ILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           +L    ++ + S        L+       K+ +    K+        L   DL  + +N 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
           +    +  + + S ++L    +         +   + RL +LQ++  +++       +  
Sbjct: 411 NPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656
                 +      + +  +                                    L  L 
Sbjct: 469 WEDANSDYAKQYENEELSWSN----------------------------------LKDLT 494

Query: 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG---------TIPLTFSNLRHIESLD 707
            ++L     +  +P  + +L  +Q+LN++ N              +         I+   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 708 LSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
           + YN L        L  +  L +    +N +   +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (542), Expect = 1e-59
 Identities = 113/578 (19%), Positives = 197/578 (34%), Gaps = 55/578 (9%)

Query: 32  NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 90
            +  +T          L  +   I  S KN+ +S   +  + S   F +F  L+ LD+  
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS- 64

Query: 91  ARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 147
                      I  ++   +  L  L L+G+ +              L  L+ L      
Sbjct: 65  -----RCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETK 115

Query: 148 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEP 205
           L     + +    +L+ L+V+ N +      +   +LT++  + LS N+ +      L+ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 206 LFN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 264
           L          D   N I+   +++       +L  L+L  N+  S      L +   L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 265 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 324
              L   +   E    + E +       +                  +    ++  N   
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TIDEFRLTYTNDFS 275

Query: 325 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 384
              V+    L ++   +++  ++              Q L +   +L       L     
Sbjct: 276 DDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH--FVGEIPQSLSKCSSLKGLYLNNN 442
            L+ L+L+ N  KG I  +  +L +L +L L  N   F G    S    +SL+ L L+ N
Sbjct: 329 FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 443 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFY 501
                +      L+ LQH+    + L+       F  L+ L  LDIS  N        F 
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 502 PL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
            L S+  + ++ N          F N ++L  LDLS   L        D L +L  LN++
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
           HNNL         +L  L  LD S N +          
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (517), Expect = 5e-56
 Identities = 106/621 (17%), Positives = 198/621 (31%), Gaps = 112/621 (18%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
           +  + + +  N L+    +  +N + L+ LD+S  ++      +    L  +  L L+ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGN 90

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
             +   S       + L+   A   ++    +    +     LK L+++ N+        
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNF-------- 139

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 315
                       +   K+   F N                                L  +
Sbjct: 140 ------------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 316 DVSNNNFQGHIPVEIG---DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
           D+S N  Q     ++    +     +  ++S+N +D     +F  +  L  L L  N  +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS 217

Query: 373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--------NLRWLLLEGNHFVGEI 424
             I          L    L     K      IF            +    L   +   + 
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 484
                  +++  + L   ++       +      Q + + +  L+         L  L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKS 332

Query: 485 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN--CSSLVTLDLSYNYLNG 542
           L ++ N  S S      P S+  + LS+N L       ++ +   +SL  LDLS+N    
Sbjct: 333 LTLTMNKGSISFKKVALP-SLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDN--- 598
            +     GL +L HL+  H+ L+          L +L  LD+S  N        F     
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 599 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
             TL  + N+                           +F                + L  
Sbjct: 450 LNTLKMAGNSFKDNTLS-------------------NVF-------------ANTTNLTF 477

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           LDLS  +L          L R+Q LN+SHNNL       ++ L  + +LD S+N++    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 718 PRQLVDLNTLAIFIVAYNNLS 738
                   +LA F +  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (469), Expect = 1e-49
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 34/445 (7%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
               +      +P    DI  S    ++S N L      SF N   LQ+LDLS  ++   
Sbjct: 16  YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 434
                     +L  L L+ N ++         L +L  L+             + +  +L
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 435 KGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL----DSLQILDISD 489
           K L + +N +   K+P +  NL  L H+ +  N+++     +   L         LD+S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 544
           N I       F  + + ++ L  N     + +    N + L    L              
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 545 -PDWIDGLSQLS--HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
            P  ++GL  ++     L + N   +  ++   L  +  + L+  ++  L          
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 602 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
             S         P                  L+    T    + +++   L  L+ LDLS
Sbjct: 311 SLSIIRCQLKQFPTLDLPF------------LKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 662 CNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
            N L   G           ++ L+LS N     +   F  L  ++ LD  ++ L      
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 720 Q-LVDLNTLAIFIVAYNNLSGKIPE 743
              + L  L    ++Y N       
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (456), Expect = 7e-48
 Identities = 96/526 (18%), Positives = 177/526 (33%), Gaps = 31/526 (5%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            +F  L  L L               H   +L  L L  + +      S      SL+NL
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL 109

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSGS 118
                ++  + S        +L+ L++         L   F      ++ +L ++ LS +
Sbjct: 110 VAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDLSYN 163

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 178
            + T +   L            L +  N +             L  L +  N  + +I  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222

Query: 179 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-- 236
           + L +L  +   RL    F+   +LE         + D   +E         S       
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 237 ---QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 293
               + ++SL+     S+ + + +    + +   +   + + +FP   L     L+ L L
Sbjct: 283 CLANVSAMSLAGV---SIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDLPF---LKSLTL 335

Query: 294 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIP 352
             +  +  F     +   L +LD+S N                SL + ++S N     + 
Sbjct: 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMS 392

Query: 353 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
           ++F  +  LQ LD  ++ L         +    L +L +S  + K         L +L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 413 LLLEGNHFVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 471
           L + GN F      +  +  ++L  L L+   L          L  LQ + M  N+L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 516
               + +L SL  LD S N I  S     +   S+   +L+ N + 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (420), Expect = 4e-43
 Identities = 79/491 (16%), Positives = 142/491 (28%), Gaps = 64/491 (13%)

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
           +    ++   N ++L++L L    +        H    L  L ++ N  Q          
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSG 102

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           L SL         L        G +I L+ L++++N +             NL  + LS 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNH---FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450
           N ++    + +  LR    + L  +     +  I     +   L  L L  N  S  I +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 451 W-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ--------ILDISDNNISGSLPSCFY 501
             L NL GL    +     +    +E      ++           ++  N        F+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 502 PLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
            L+ +  + L+   +   L++          +L +    L    P     L  L  L L 
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPK--HFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLT 336

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN------TTLHESYNNNSSPDKP 614
            N     +  +   L  L  LDLS N L       + +        L  S+N        
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 615 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-I 673
           F                                    L  L  LD   + L         
Sbjct: 395 FMG----------------------------------LEELQHLDFQHSTLKRVTEFSAF 420

Query: 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIV 732
            +L ++  L++S+ N        F  L  + +L ++ N            +   L    +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 733 AYNNLSGKIPE 743
           +   L      
Sbjct: 481 SKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (373), Expect = 3e-37
 Identities = 67/421 (15%), Positives = 130/421 (30%), Gaps = 13/421 (3%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
             +  +L  + L  N          +         L+LD S   I  +Q        L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L++ G   +  +      +   L    +         +        M  L  +++    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 121 GTNSSRILDQG-LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
              +    D      LA++  + +    +       +      + L +   QL       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK----QF 322

Query: 180 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
           P + L  ++ L L+ N   I            L   D   N ++     S+S      L+
Sbjct: 323 PTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 240 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 299
            L LS N   ++          EL+  +  H  +          +  KL +L +   +  
Sbjct: 380 HLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 300 GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI 359
             F         L  L ++ N+F+ +    +     +L + ++S   L+      F  + 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419
            LQ L++S+N L      H      +L  L  S N ++          ++L +  L  N 
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 420 F 420
            
Sbjct: 557 V 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (340), Expect = 5e-33
 Identities = 68/396 (17%), Positives = 121/396 (30%), Gaps = 81/396 (20%)

Query: 349 GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 408
           GS+      V  +      + KL+ ++PD +     + + + LS N LK        +  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 468
            L+WL L          ++      L  L L  N +    P     L  L+++V  +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 469 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 528
                    +L +L+ L+++ N I                               F N +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLP-----------------------AYFSNLT 153

Query: 529 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
           +LV +DLSYNY+     + +  L +   +                       LD+S N +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSLNPI 193

Query: 589 HGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
             +    F    LHE     N NSS                        I +   +N+A 
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSS-----------------------NIMKTCLQNLA- 229

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT--LNLSHNNLTGTIPLTFSNLRHI 703
                V  L+ G       L    P  +  L  +      L++ N      + F  L ++
Sbjct: 230 --GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 704 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739
            ++ L+   +       +          +    L  
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 3e-19
 Identities = 51/260 (19%), Positives = 78/260 (30%), Gaps = 49/260 (18%)

Query: 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553
           GSL  C   +           L  ++ +      SS   +DLS+N L           S+
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-N 608
           L  L+L+   +E         L+ L  L L+ N +    P  F        L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 609 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG- 667
           S    P                                     L  L  L+++ N +   
Sbjct: 118 SLESFPIGQ----------------------------------LITLKKLNVAHNFIHSC 143

Query: 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQLVD 723
            +P    NLT +  ++LS+N +          LR       SLD+S N +   I  Q   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 724 LNTLAIFIVAYNNLSGKIPE 743
              L    +  N  S  I +
Sbjct: 203 GIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 4e-19
 Identities = 50/295 (16%), Positives = 95/295 (32%), Gaps = 25/295 (8%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
                +L +                +   L+ LTL  +    S+     +  PSL  L +
Sbjct: 306 HFKWQSLSIIRCQLK-----QFPTLDLPFLKSLTL--TMNKGSISFKKVA-LPSLSYLDL 357

Query: 64  SGCEVNGVLSGQGFP-HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           S   ++             SL HLD+ F    + ++        +  L++L    STL  
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLKR 413

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
            +          L  L  L I   + +          TSL  L ++ N    +  S+   
Sbjct: 414 VTEFSA---FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 242
           + T++  L LS       +S        +L++ +  +N +    +        + L +L 
Sbjct: 471 NTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSH--YNQLYSLSTLD 527

Query: 243 LSSNYGDSVTFPKFLYHQHELKEAELSH--IKMI---GEFPNWLLENNTKLEFLY 292
            S N     +     +    L    L++  +  I    +F  W+ E    L  + 
Sbjct: 528 CSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  191 bits (487), Expect = 6e-51
 Identities = 114/566 (20%), Positives = 201/566 (35%), Gaps = 61/566 (10%)

Query: 77  FPHFKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 134
                + E L + F  I     +SF       +  L+ L L           I  +    
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSF-----PFLEQLQLLELGSQYT---PLTIDKEAFRN 71

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT-GSISSSPLVHLTSIEELRLS 193
           L +L+ L + ++ +    P        L  L + F  L+   +      +L ++  L LS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 194 NNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 252
            N  R  + L P F   + LK  D  +N+I               L   SL++N   S  
Sbjct: 132 KNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 253 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 312
              +    +  +   L  +         +  N   ++     +++++      +     +
Sbjct: 191 SVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 313 RFLDVSNNNFQGHIPVEI--GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370
                  +N +         G    S+ + ++S   +       F  +  L+ L+L+ NK
Sbjct: 243 MGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 429
           +  +I D       NL+ L+LS N L   ++S  F  L  + ++ L+ NH      Q+  
Sbjct: 302 IN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG------------------- 470
               L+ L L +N L+      +  +  +  I +  N L                     
Sbjct: 360 FLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 471 --PIPVEFCRLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSKNMLHG----QLKEG 522
              I     R+  LQIL ++ N  S            S++Q+ L +NML      +L   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 582
            F   S L  L L++NYLN   P     L+ L  L+L  N L       L     L++LD
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILD 532

Query: 583 LSDNNLHGLIPSCFDNTTLHESYNNN 608
           +S N L    P  F + ++ +  +N 
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (474), Expect = 3e-49
 Identities = 130/709 (18%), Positives = 227/709 (32%), Gaps = 98/709 (13%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
           L   + L +  N +R            L++L++       +I      +L ++  L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
           +     +  +       L         ++  + +         L  L LS N   S+   
Sbjct: 83  SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLEN--NTKLEFLYL------VNDSLAGPFRLPI 306
                 + LK  + S  + I       LE      L F  L         S+     +  
Sbjct: 142 PSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 307 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 366
             +  L  LDVS N +             ++       NA+  S   S      +     
Sbjct: 201 FRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 367 SNNKLTGEIPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI 424
             + +     +  A +   ++  L LS+  +   + SR+F  L++L+ L L  N      
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 484
            ++     +L+ L L+ N L          L  + +I + KNH+       F  L+ LQ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 485 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-S 543
           LD+ DN ++    +  +  SI  + LS N L   L +       +   + LS N L    
Sbjct: 367 LDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHLSENRLENLD 417

Query: 544 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLH 602
           I  ++  +  L  L L  N        Q       L+ L L +N L     +        
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662
                                                            LS L  L L+ 
Sbjct: 478 G------------------------------------------------LSHLQVLYLNH 489

Query: 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 722
           N L    P    +LT ++ L+L+ N LT           ++E LD+S N+L    P   V
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFV 547

Query: 723 DLNTLAIFIVAYNNLSGKIP-EWTAQFATFNKSSYDGNP--FLCGLPLPICRSLATMSEA 779
            L+      + +N    +        +      +  G P    C  P     S + +S  
Sbjct: 548 SLSV---LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD----SFSGVSLF 600

Query: 780 STSNEG-DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 827
           S S EG D+  +     F  F +  V +   ++ +L V  +    ++  
Sbjct: 601 SLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 7e-33
 Identities = 72/440 (16%), Positives = 138/440 (31%), Gaps = 66/440 (15%)

Query: 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
           R       N    +P     +L +     +S N +     SSF  +  LQ L+L +    
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI--PQSLS 429
             I         NL  L L ++ +   +    F  L +L  L L        +       
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 430 KCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD--SLQILD 486
              +L  L L+ N +    +    G L  L+ I    N +      E   L   +L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 487 ISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 544
           ++ N++   +   +       + + L    + G        N  ++       N ++ S 
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSNAISKSQ 232

Query: 545 PDWIDGLSQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 598
              +     +       +N++   +        + ++ LDLS   +  L    F+     
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
             L+ +YN  +                       +    F             L  L  L
Sbjct: 293 KVLNLAYNKINK----------------------IADEAFYG-----------LDNLQVL 319

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
           +LS N L          L ++  ++L  N++      TF  L  +++LDL  N L+    
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 719 RQLVDLNTLAIFIVAYNNLS 738
             +  + ++    ++ N L 
Sbjct: 376 -TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 7e-33
 Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 31/369 (8%)

Query: 382 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 441
           C  +         +L   +      L     LLL  N+       S      L+ L L +
Sbjct: 2   CSFDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS 57

Query: 442 NNLSGKI-PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL--PS 498
                 I      NL  L+ + +  + +    P  F  L  L  L +    +S ++    
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 499 CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ--LS 555
            F  L ++ ++ LSKN +       +F   +SL ++D S N +       ++ L    LS
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 556 HLNLAHNNLEGEVPIQLCRLNQ------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 609
             +LA N+L   V +   +         L++LD+S N     I   F N        +  
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 610 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 669
                    F            I +  + T   +A        S +  LDLS   +    
Sbjct: 238 LAHHIMGAGFG--------FHNIKDPDQNTFAGLA-------RSSVRHLDLSHGFVFSLN 282

Query: 670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 729
                 L  ++ LNL++N +       F  L +++ L+LSYN L          L  +A 
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 730 FIVAYNNLS 738
             +  N+++
Sbjct: 343 IDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (303), Expect = 4e-28
 Identities = 81/517 (15%), Positives = 155/517 (29%), Gaps = 54/517 (10%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI------- 54
           G   SL ++   SN          EL             ++  +    S+          
Sbjct: 145 GKLNSLKSIDFSSNQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 55  FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 114
              L+ L +SG      ++G         +   +                     +    
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI----------------LAHHIMGAG 246

Query: 115 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
                +          GL     ++ L + +  +             L++L++++N++  
Sbjct: 247 FGFHNIKDPDQNTF-AGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN- 303

Query: 175 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 234
            I+      L +++ L LS N     +     +   K+   D + N I   I +  +   
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIA--IIQDQTFKF 360

Query: 235 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 294
             +L++L L  N   ++T   F+    ++    LS  K++      L  N   L    L 
Sbjct: 361 LEKLQTLDLRDN---ALTTIHFIPSIPDI---FLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 295 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 354
           N  +             L+ L ++ N F      +     PSL    +  N L  +  + 
Sbjct: 415 NLDILYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 355 FGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 409
               +F     LQ L L++N L   +P  +      L  LSL++N L     S      N
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPAN 527

Query: 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHIVMPKNHL 468
           L  L +  N  +   P       SL  L + +N    +       N     ++ +     
Sbjct: 528 LEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP- 583

Query: 469 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI 505
                V       + +  +S               S+
Sbjct: 584 ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 34/223 (15%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           +   P L  L L  N F+ + +  Q      +LE L L ++ L ++    +         
Sbjct: 422 LLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENMLQLAWETEL--------- 471

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
                           F     L+ L +    +    S    +   + +L+ LSL+ + L
Sbjct: 472 ------------CWDVFEGLSHLQVLYLNHNYL---NSLPPGVFSHLTALRGLSLNSNRL 516

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
              S   L       A+L+ L I  N L    P       SL +LD++ N+       S 
Sbjct: 517 TVLSHNDL------PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELST 567

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223
            ++  +   + ++     I       F+   L     +  +  
Sbjct: 568 FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEE 610

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (442), Expect = 2e-46
 Identities = 109/553 (19%), Positives = 187/553 (33%), Gaps = 62/553 (11%)

Query: 53  SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 110
           ++  S KNL +S   +  + S   F  F  L+ LD+    I    + ++     +S+  L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHL 78

Query: 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 170
             L L+G+ +      +       L+ LQ+L     +L     + + +  +L+ L+V+ N
Sbjct: 79  STLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 171 QLTGSISSSPLVHLTSIEELRLSNNHFRI--PVSLEPLFNHSKLKIF-DAKNNEINGEIN 227
            +          +LT++E L LS+N  +      L  L     L +  D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-- 192

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS-----HIKMIGEFPNWLL 282
                  + +L  L+L +N+         +     L+   L      +   + +F    L
Sbjct: 193 -QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 283 ENNTKLEFLYL---VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 339
           E    L          D          +    +    + +   +             L  
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 340 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL--K 397
            N            S      L+ L  ++NK      +   +   +LEFL LS N L  K
Sbjct: 312 VNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362

Query: 398 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 457
           G      F   +L++L L  N  +  +  +      L+ L   ++NL       +     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----- 416

Query: 458 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 516
                             F  L +L  LDIS  +   +    F  L S++ + ++ N   
Sbjct: 417 ------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 517 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 576
                  F    +L  LDLS   L    P   + LS L  LN+A N L+        RL 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 577 QLQLLDLSDNNLH 589
            LQ + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (416), Expect = 5e-43
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 40/486 (8%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
              + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
             +  ++L      S L+   A    +    N    +     LK L+++ N   S   P+
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF----LYLVNDSL----AGPFRLPIH 307
           +  +   L+  +LS  K I       L    ++      L L  + +     G F+    
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI------PSSFGNVIFL 361
              RL  L + NN    ++       L  L    + +              S+   +  L
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 362 QF--LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGN 418
                 L+      +    L  C  N+   SL + +++    FS  F  ++L  +  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEF 476
            F         K  SLK L   +N           +L  L+ + + +N L   G      
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 535
               SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPS 594
           S+ +   +     +GLS L  L +A N+ +          L  L  LDLS   L  L P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 595 CFDNTT 600
            F++ +
Sbjct: 489 AFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (398), Expect = 1e-40
 Identities = 113/602 (18%), Positives = 190/602 (31%), Gaps = 121/602 (20%)

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219
            S + LD+SFN L   + S        ++ L LS    +   ++E          +    
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------GAYQ--- 73

Query: 220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 279
                      SL+    L +L L+ N                           I     
Sbjct: 74  -----------SLS---HLSTLILTGNP--------------------------IQSLAL 93

Query: 280 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 339
                 + L+ L  V  +LA     PI   K L+ L+V++N  Q     E    L +L +
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 340 FNISMNALDGSIPSSFGNVIFLQF----LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 395
            ++S N +     +    +  +      LDLS N +    P       + L  L+L NN 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNNF 211

Query: 396 LKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL--------YLNNNNLSG 446
              ++       L  L    L    F  E        S+L+GL         L   +   
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 447 -KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPSCFYPLS 504
             I      L  +    +    +E      +      L++++                 S
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----S 326

Query: 505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHN 562
           +K++  + N         +  +  SL  LDLS N L+  G       G + L +L+L+ N
Sbjct: 327 LKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN----TTLHESYNNNSSPDKPFKT 617
            +   +      L QL+ LD   +NL  +   S F +      L  S+ +          
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---- 438

Query: 618 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNL 676
                            IF               LS L  L ++ N    +  P I   L
Sbjct: 439 ----------------GIFN-------------GLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
             +  L+LS   L    P  F++L  ++ L+++ N+L          L +L    +  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 737 LS 738
             
Sbjct: 530 WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  153 bits (389), Expect = 2e-39
 Identities = 88/416 (21%), Positives = 153/416 (36%), Gaps = 36/416 (8%)

Query: 316 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 375
                NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++   I
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 376 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSL 434
            D       +L  L L+ N ++  +    FS L +L+ L+    +        +    +L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 435 KGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISD 489
           K L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 544
           N ++   P  F  + + ++ L  N     + +      + L    L              
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 545 -PDWIDGLSQLS--HLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
               ++GL  L+     LA+ +   +  I L   L  +    L    +  +    ++   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 660
            H    N      P             ++ K L+   FT+     A+    L  L  LDL
Sbjct: 307 QHLELVNCKFGQFPT------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 661 SCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           S N L   G         T ++ L+LS N +  T+   F  L  +E LD  ++ L 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (378), Expect = 4e-38
 Identities = 110/513 (21%), Positives = 187/513 (36%), Gaps = 41/513 (7%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            SFP L  L L                + ++L  L L  + +  SL     S   SL+ L
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSGS 118
                 +   L      H K+L+ L++         L   F      ++ +L++L LS +
Sbjct: 106 VAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSN 159

Query: 119 TLGTNSSRILDQGLCPLAHLQ----ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
            +      I    L  L  +      L +  N +    P        L  L +  N  + 
Sbjct: 160 KI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 175 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-----SKLKIFDAKNNEINGEINES 229
           ++  + +  L  +E  RL    FR   +LE            L I + +   ++  +++ 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 230 HSLTPKFQ-LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 288
             L      + S SL S   + V    + +    L+          G+FP   L++  +L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK----FGQFPTLKLKSLKRL 330

Query: 289 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG-HIPVEIGDILPSLVYFNISMNAL 347
            F      +      LP      L FLD+S N         +      SL Y ++S N +
Sbjct: 331 TFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS- 406
             ++ S+F  +  L+ LD  ++ L       + +   NL +L +S+   +   F+ IF+ 
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG 443

Query: 407 LRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465
           L +L  L + GN F         ++  +L  L L+   L    P    +L  LQ + M  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498
           N L+      F RL SLQ + +  N    S P 
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  140 bits (354), Expect = 6e-35
 Identities = 82/407 (20%), Positives = 139/407 (34%), Gaps = 43/407 (10%)

Query: 365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 423
                    +IPD+L     + + L LS N L+ H+ S  F     L+ L L        
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
              +    S L  L L  N +          L  LQ +V  + +L          L +L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 484 ILDISDNNI-SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSL----VTLDLSY 537
            L+++ N I S  LP  F  L +++ + LS N +   +          +    ++LDLS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDL------SDNNLHG 590
           N +N  I        +L  L L +N     V     + L  L++  L      ++ NL  
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 591 LIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEK------KILEIFEFT---- 639
              S  +    L       +  D        +     +V         I  + +F+    
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 640 ------TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT--G 691
                        +    L  L  L  + NK          +L  ++ L+LS N L+  G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
               +      ++ LDLS+N +   +    + L  L      ++NL 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 1e-17
 Identities = 54/263 (20%), Positives = 79/263 (30%), Gaps = 62/263 (23%)

Query: 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545
              + N    +P    P S K + LS N L   L   +FF+   L  LDLS   +     
Sbjct: 13  QCMELNFY-KIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 605
                LS LS L L  N ++         L+ LQ L   + NL  L      +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH------- 122

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
                                                         L  L  L+++ N +
Sbjct: 123 ----------------------------------------------LKTLKELNVAHNLI 136

Query: 666 -VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQ 720
               +P    NLT ++ L+LS N +          L        SLDLS N ++  I   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 721 LVDLNTLAIFIVAYNNLSGKIPE 743
                 L    +  N  S  + +
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMK 218

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (404), Expect = 2e-41
 Identities = 89/560 (15%), Positives = 176/560 (31%), Gaps = 80/560 (14%)

Query: 159 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 218
           T +++ LD+SFN++T  I    L    +++ L L ++     +  +  ++   L+  D  
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLS 82

Query: 219 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 278
           +N ++     S    P   LK L+L  N   ++       +   L+   + +++   E  
Sbjct: 83  DNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 279 NWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 338
                  T L  L +   SL       + S + +  L +  +     +     DIL S+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 339 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE--FLSLSNNSL 396
           Y  +    L     S          +     + +  + D      + L    L LS    
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEF 258

Query: 397 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 456
                + +         ++     V        +  +++ L++    L   +      L+
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKV--------ETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 457 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 516
            ++ I +  + +          L SL+ LD+S+N +                        
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK------------------ 352

Query: 517 GQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR 574
                       SL TL LS N+L       + +  L  L+ L+++ N     +P     
Sbjct: 353 ---NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 575 LNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 633
             +++ L+LS   +  +          L  S NN                        + 
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN------------------------LD 444

Query: 634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693
               F  +             L  L +S NKL   +P        +  + +S N L    
Sbjct: 445 SFSLFLPR-------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489

Query: 694 PLTFSNLRHIESLDLSYNKL 713
              F  L  ++ + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  154 bits (390), Expect = 1e-39
 Identities = 93/589 (15%), Positives = 173/589 (29%), Gaps = 97/589 (16%)

Query: 161 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 220
           +  + D      T    S P     +++ L LS N     +    L   + L++   K++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 221 EINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 278
            IN  I     +SL     L+ L LS N                           +    
Sbjct: 61  RIN-TIEGDAFYSLG---SLEHLDLSDN--------------------------HLSSLS 90

Query: 279 NWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 337
           +      + L++L L+ +            +   L+ L + N      I       L SL
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 397
               I   +L      S  ++  +  L L  ++    + +  A    ++ +L L + +L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 398 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 457
              FS +        +            +S ++   L    L  + +         +   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTL 263

Query: 458 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 516
                   +  +    +      +++ L I    +   L + +  L  +K++ +  + + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 517 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNLAHNNLE--GEVPIQ 571
             +      +  SL  LDLS N +                L  L L+ N+L    +    
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 572 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSV 628
           L  L  L  LD+S N  H +  SC     +     S                        
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG--------------------- 421

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 688
              I  +               +   L  LD+S N L          L R+Q L +S N 
Sbjct: 422 ---IRVVKT------------CIPQTLEVLDVSNNNL-DSFSL---FLPRLQELYISRNK 462

Query: 689 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 737
           L      +      +  + +S N+L          L +L    +  N  
Sbjct: 463 LKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (378), Expect = 3e-38
 Identities = 96/506 (18%), Positives = 188/506 (37%), Gaps = 45/506 (8%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
            ++K L LS + +    + I    L   A+LQ L + ++ +         +  SL  LD+
Sbjct: 26  AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEI 226
           S N L+ S+SSS    L+S++ L L  N ++  + +  LF + + L+     N E   EI
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 227 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 286
                      L  L + +    +    + L    ++    L              +  +
Sbjct: 140 RRI-DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL-SESAFLLEIFADILS 196

Query: 287 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI---------LPSL 337
            + +L L + +LA     P+   +    +                ++         L  +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 338 VYFNISMNALDGSIPSSFGNV--------IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
            + + ++N L    PS    V        + ++ L +    L       +      ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRI 315

Query: 390 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQS---LSKCSSLKGLYLNNNNLS 445
           ++ N+ +   +       L++L +L L  N  V E  ++        SL+ L L+ N+L 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 446 --GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 503
              K    L  LK L  + + +N    P+P      + ++ L++S   I   + +C  P 
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQ 431

Query: 504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 563
           +++ + +S N L     +        L  L +S N L  ++PD       L  + ++ N 
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ 484

Query: 564 LEGEVPIQLCRLNQLQLLDLSDNNLH 589
           L+        RL  LQ + L  N   
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 5e-38
 Identities = 89/508 (17%), Positives = 189/508 (37%), Gaps = 46/508 (9%)

Query: 80  FKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 137
             +++ LD+ F +I    +         +  +L+ L L  S +    + I       L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL-----RACANLQVLILKSSRI----NTIEGDAFYSLGS 75

Query: 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
           L+ L + +N L           +SL+ L++  N       +S   +LT+++ LR+ N   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 198 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 257
              +        + L   + K   +     +S SL     +  L+L  +    +    F 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFL-LEIFA 192

Query: 258 YHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGP-------FRLPIHS 308
                ++  EL    +     + L   E ++ ++ L      L              I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 309 HKRLRFLDVSNNNFQGHIPVEIGDI-------LPSLVYFNISMNALDGSIPSSFGNVIFL 361
              + F D + N      P E   +         ++   +I    L   + + +  +  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWLLLEGN 418
           + + + N+K+   +P   +    +LEFL LS N +            +  +L+ L+L  N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 419 HF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 476
           H   + +  + L    +L  L ++ N     +P      + ++ + +    +     V+ 
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKT 427

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           C   +L++LD+S+NN+  S     +   ++++++S+N L   L + + F    L+ + +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLLVMKIS 481

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNL 564
            N L        D L+ L  + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (370), Expect = 3e-37
 Identities = 75/453 (16%), Positives = 158/453 (34%), Gaps = 62/453 (13%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
           ++ LD+S N    +I         +L    +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSLS 429
           +  +         +L++L+L  N  +    + +F  L NL+ L +       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
             +SL  L +   +L     + L +++ + H+ +  +     + +    L S++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT----------LDLSYNY 539
            N++    S      +             L + +F     L+            D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 540 LNGSIPDWIDGLS--------QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
           L    P   D +S         +  L++    L  ++      L +++ + + ++ +  +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 592 IPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
             S   +      L  S N     ++  K S                             
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMV--EEYLKNSACKGA------------------------ 359

Query: 648 QGRVLSLLAGLDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 705
                  L  L LS N L  +      +  L  + +L++S N     +P +      +  
Sbjct: 360 ----WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 706 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
           L+LS   +   +   +    TL +  V+ NNL 
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (364), Expect = 2e-36
 Identities = 97/545 (17%), Positives = 186/545 (34%), Gaps = 72/545 (13%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSLKN 60
             ++ +L L  N  T       +L    NL+ L L     +++      S      SL++
Sbjct: 25  TAAMKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRINTIEGDAFYS----LGSLEH 78

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSG 117
           L +S   ++  LS   F    SL++L++    +  + + + F      ++ +L+ L +  
Sbjct: 79  LDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF-----PNLTNLQTLRIGN 132

Query: 118 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 177
                  S I       L  L EL I    LR      L +   +  L +  ++    + 
Sbjct: 133 VET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188

Query: 178 SSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
                 L+S+  L L + +                               +   L     
Sbjct: 189 EIFADILSSVRYLELRDTNL---------------------------ARFQFSPLPVDEV 221

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 297
              +   +  G  +T   F           L  ++ I E      ++ T           
Sbjct: 222 SSPMKKLAFRGSVLTDESFNEL--------LKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 298 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 357
                 L       +R L +       +    +  +L  +    +  + +     S   +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 358 VIFLQFLDLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLK--GHIFSRIFSLRNLRWL 413
           +  L+FLDLS N +  E   + A      +L+ L LS N L+        + +L+NL  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 473
            +  N F   +P S      ++ L L++  +   +       + L+ + +  N+L+    
Sbjct: 393 DISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLDS-FS 447

Query: 474 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 533
           +    L  LQ L IS N +  +LP       +  + +S+N L   + +G F   +SL  +
Sbjct: 448 L---FLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKI 502

Query: 534 DLSYN 538
            L  N
Sbjct: 503 WLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 6e-34
 Identities = 74/401 (18%), Positives = 138/401 (34%), Gaps = 30/401 (7%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
               D  +   T  IP  L      ++ L LS N +  +I         NL+ L+L+ + 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL-EGPIPVEFCR 478
                  +     SL+ L L++N+LS     W G L  L+++ +  N      +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 479 LDSLQILDISDNNISGSLP-SCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-----------EVPIQLCRLNQLQLLDLSD 585
            +     +  + D LS + +L L   NL               P++        L D S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N L  L+    + + +       +       +   +    G VE   +         + Y
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 646 AYQG--RVLSLLAGLDLSCNKLVGHIPPQIG-NLTRIQTLNLSHNNLTGTIPLT---FSN 699
                  +L  +  + +  +K+   +P     +L  ++ L+LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 700 LRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLS 738
              +++L LS N L    K    L+ L  L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (274), Expect = 5e-25
 Identities = 83/460 (18%), Positives = 151/460 (32%), Gaps = 68/460 (14%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 64
            SL  L+L  N +  TL  T    N TNL+ L + +      + +   +   SL  L + 
Sbjct: 98  SSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 65  GCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNS 124
              +      Q     + + HL +  +        L+I  + + S++YL L  + L    
Sbjct: 157 ALSLRN-YQSQSLKSIRDIHHLTLHLSES---AFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 125 SRILDQGLCPLAHLQELYIDNNDLRG-------SLPWCLANTTSLRILDVSFNQLT---- 173
              L       + +++L    + L          L   +   + +   D + N L     
Sbjct: 213 FSPLP-VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 174 ---GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEING-EINE 228
                +S    V   +I  L +   +  +   L  +++   K+K    +N+++     + 
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFY--LFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 229 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 288
           S  L     L+ L LS N                        +       +        L
Sbjct: 330 SQHLK---SLEFLDLSEN-----------------------LMVEEYLKNSACKGAWPSL 363

Query: 289 EFLYLVNDSLA--GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 346
           + L L  + L         + + K L  LD+S N F   +P         + + N+S   
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTG 421

Query: 347 LDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 404
           +           I   L+ LD+SNN L       L      L+ L +S N LK       
Sbjct: 422 I-----RVVKTCIPQTLEVLDVSNNNLD-SFSLFL----PRLQELYISRNKLK--TLPDA 469

Query: 405 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444
                L  + +  N           + +SL+ ++L+ N  
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 70/381 (18%), Positives = 128/381 (33%), Gaps = 29/381 (7%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
              SLN L +++ +     + +  L +  ++ +LTL  S     LL+    I  S++ L 
Sbjct: 146 GLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE 202

Query: 63  MSGCEVNGV--LSGQGFPHFKSLEHLDMRFARIALNT-SFLQIIGESMPSLKYLSLSGST 119
           +    +                ++ L  R + +   + + L  +   +  L  +     T
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 120 L-------GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 172
           L        + S  + + G      ++ L+I    L   L    +    ++ + V  +++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 173 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH--SKLKIFDAKNNEINGEINESH 230
              +  S   HL S+E L LS N                  L+      N +        
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 231 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 290
            L     L SL +S N       P       +++   LS    I      +      LE 
Sbjct: 382 ILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSS-TGIRVVKTCIP---QTLEV 435

Query: 291 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 350
           L + N++L       +    RL+ L +S N  +  +P     + P L+   IS N L   
Sbjct: 436 LDVSNNNLD---SFSLFLP-RLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSV 488

Query: 351 IPSSFGNVIFLQFLDLSNNKL 371
               F  +  LQ + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 44/246 (17%)

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
              D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSC 595
            + +N    D    L  L HL+L+ N+L          L+ L+ L+L  N    L + S 
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 596 FDN----TTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649
           F N     TL        S      F                                  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAG-------------------------------- 146

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 709
             L+ L  L++    L  +    + ++  I  L L  +     + +    L  +  L+L 
Sbjct: 147 --LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 710 YNKLSG 715
              L+ 
Sbjct: 205 DTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 8e-15
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 44/221 (19%)

Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
            +C +    D        SIP  +   + +  L+L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 585 DNNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFT 639
            + ++ +    F +      L  S N+ SS     F                        
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP---------------------- 96

Query: 640 TKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIP-LTF 697
                       LS L  L+L  N      +     NLT +QTL + +      I  + F
Sbjct: 97  ------------LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 698 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
           + L  +  L++    L     + L  +  +    +  +  +
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 4e-14
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 40/352 (11%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            S   ++ L L  +     L         +++ YL L D++L      S   +      +
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPM 225

Query: 62  SMSGCEVNGVLSG---------QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 112
                  + +            +       +E  D     +         +   +  ++ 
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 113 LSLSGSTLGTNS-SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 171
           +++    +        L      L  ++ + ++N+ +         +  SL  LD+S N 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 172 LT--GSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINE 228
           +      +S+      S++ L LS NH R +  + E L     L   D   N  +   + 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

Query: 229 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWL----L 282
                   +++ L+LSS     V           L+  ++S+  +     F   L    +
Sbjct: 406 CQWPE---KMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNLDSFSLFLPRLQELYI 458

Query: 283 ENN-----------TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 323
             N             L  + +  + L             L+ + +  N + 
Sbjct: 459 SRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 2e-40
 Identities = 98/476 (20%), Positives = 171/476 (35%), Gaps = 89/476 (18%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
           LA   +  +   ++  ++     +   +  L      +    S   + +L ++ ++  SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
           N       + PL N +KL      NN+I   I    +LT    L  L+L +N        
Sbjct: 78  NQLT---DITPLKNLTKLVDILMNNNQIAD-ITPLANLT---NLTGLTLFNN-------- 122

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 314
                       +++ I  +         N T L  L L +++++      +     L+ 
Sbjct: 123 ------------QITDIDPLK--------NLTNLNRLELSSNTISDI--SALSGLTSLQQ 160

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           L   N       P+     L +L   +IS N +  S  S    +  L+ L  +NN+++  
Sbjct: 161 LSFGNQ-VTDLKPLAN---LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 434
            P  +     NL+ LSL+ N LK      + SL NL  L L  N      P  LS  + L
Sbjct: 215 TPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 494
             L L  N +S   P  L  L  L ++ + +N LE   P     L +L  L +  NNIS 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 495 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 554
             P                            + + L  L    N ++      +  L+ +
Sbjct: 324 ISP--------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 610
           + L+  HN +    P+    L ++  L L+D        +   N ++  +  N + 
Sbjct: 356 NWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 5e-37
 Identities = 99/564 (17%), Positives = 188/564 (33%), Gaps = 104/564 (18%)

Query: 6   SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 65
            L +  +  +     +                L  ++  ++   S       +  L    
Sbjct: 2   PLGSATITQDT---PINQIFTDTALAEKMKTVLGKTN--VTDTVSQTD-LDQVTTLQADR 55

Query: 66  CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 125
             +  +    G  +  +L  ++    ++             +  LK L+           
Sbjct: 56  LGIKSI---DGVEYLNNLTQINFSNNQL-----------TDITPLKNLT----------- 90

Query: 126 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185
                       L ++ ++NN +    P  LAN T+L  L +  NQ+T      PL +LT
Sbjct: 91  -----------KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLT 134

Query: 186 SIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS 245
           ++  L LS+N       +  L   + L+     N      + +   L     L+ L +SS
Sbjct: 135 NLNRLELSSNTIS---DISALSGLTSLQQLSFGNQ-----VTDLKPLANLTTLERLDISS 186

Query: 246 NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP 305
           N                    ++S I ++           T LE L   N+ ++     P
Sbjct: 187 N--------------------KVSDISVLA--------KLTNLESLIATNNQISDIT--P 216

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 365
           +     L  L ++ N  +      +   L +L   +++ N +    P     +  L  L 
Sbjct: 217 LGILTNLDELSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 366 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 425
           L  N+++   P         L  L L+ N L+    S I +L+NL +L L  N+     P
Sbjct: 272 LGANQISNISPLA---GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP 326

Query: 426 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485
             +S  + L+ L+  NN +S      L NL  +  +    N +    P     L  +  L
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545
            ++D   + +  +    +SI      KN+    +   T  +  S    D+++N  +    
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPN--TVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTN 437

Query: 546 DWIDGLSQLSHLNLAHNNLEGEVP 569
           +     SQ   +        G V 
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 1e-35
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 68/448 (15%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
                +     L   ++     +      ++  L       +    VE    L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
            S N L    P    N+  L  + ++NN++    P        NL  L+L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD--I 127

Query: 402 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 461
             + +L NL  L L  N        +LS  +SL+ L   N  ++   P  L NL  L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 462 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 521
            +  N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 522 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 581
           GT  + ++L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 582 DLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 639
           +L++N L  + P  +  + T L   +N                         I +I   +
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFN------------------------NISDISPVS 328

Query: 640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 699
           +           L+ L  L    NK+       + NLT I  L+  HN ++   PL  +N
Sbjct: 329 S-----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--AN 373

Query: 700 LRHIESLDLSYNKLSGKIPRQLVDLNTL 727
           L  I  L L+    +        +++  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 2e-34
 Identities = 96/491 (19%), Positives = 165/491 (33%), Gaps = 78/491 (15%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           +        L   N    +T T    +   +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTN----VTDTVSQTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
            S  ++  +       +   L  + M   +IA  T        ++ +L  L+L  + +  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQITD 126

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
                    L  L +L  L + +N +       L+  TSL+ L              PL 
Sbjct: 127 IDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 242
           +LT++E L +S+N       +  L   + L+   A NN+I+  I     LT    L  LS
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD-ITPLGILT---NLDELS 227

Query: 243 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 302
           L+ N                        +K IG        + T L  L L N+ ++   
Sbjct: 228 LNGN-----------------------QLKDIGTL-----ASLTNLTDLDLANNQISNL- 258

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
             P+    +L  L +  N      P+     L +L    ++ N L+   P    N+  L 
Sbjct: 259 -APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
           +L L  N ++   P         L+ L   NN +     S + +L N+ WL    N    
Sbjct: 313 YLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
             P  L+  + +  L LN+   +     +  N+     +      L  P         S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 483 QILDISDNNIS 493
              DI+ N  S
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (334), Expect = 6e-33
 Identities = 86/411 (20%), Positives = 149/411 (36%), Gaps = 65/411 (15%)

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           L   +   +    +  ++     ++  +  L      +     D +     NL  ++ SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVE-YLNNLTQINFSN 77

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
           N L       + +L  L  +L+  N      P  L+  ++L GL L NN ++   P  L 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
           NL  L  + +  N +          L SLQ L    N ++   P      +++++ +S N
Sbjct: 132 NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLT-TLERLDISSN 187

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573
            +            ++L +L  + N ++   P  +  L+ L  L+L  N L+      L 
Sbjct: 188 KVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 574 RLNQLQLLDLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 631
            L  L  LDL++N +  L P       T L    N                        +
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN------------------------Q 276

Query: 632 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 691
           I  I                L+ L  L+L+ N+L    P  I NL  +  L L  NN++ 
Sbjct: 277 ISNISPLAG-----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742
             P+  S+L  ++ L    NK+S      L +L  +      +N +S   P
Sbjct: 324 ISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 2e-30
 Identities = 79/389 (20%), Positives = 132/389 (33%), Gaps = 63/389 (16%)

Query: 353 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
            +   +       L    +T  +          +  L      +K      +  L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 472
           +    N      P  L   + L  + +NNN ++   P  L NL  L  + +  N +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 473 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 532
           P     L +L  L++S N IS  + +     S++Q+                 N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLER 181

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592
           LD+S N +  S    +  L+ L  L   +N +    P+    L  L  L L+ N L  + 
Sbjct: 182 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG 237

Query: 593 P-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 650
             +   N T L  + N                         I  +   +           
Sbjct: 238 TLASLTNLTDLDLANNQ------------------------ISNLAPLSG---------- 263

Query: 651 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 710
            L+ L  L L  N++   I P +  LT +  L L+ N L    P+  SNL+++  L L +
Sbjct: 264 -LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYF 318

Query: 711 NKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739
           N +S   P  +  L  L       N +S 
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 6e-27
 Identities = 85/446 (19%), Positives = 158/446 (35%), Gaps = 74/446 (16%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               +L  ++  +N     LT    L N T L  + ++++   I+ +  + +   +L  L
Sbjct: 65  EYLNNLTQINFSNNQ----LTDITPLKNLTKLVDILMNNN--QIADITPLAN-LTNLTGL 117

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
           ++   ++  +       +  +L  L++    I+  ++        + SL+ LS       
Sbjct: 118 TLFNNQITDI---DPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFGNQVTD 169

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
                   + L  L  L+ L I +N +       LA  T+L  L  + NQ++     +PL
Sbjct: 170 L-------KPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS---DITPL 217

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LT+++EL L+ N  +    +  L + + L   D  NN+I+     S  LT   +L  L
Sbjct: 218 GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG-LT---KLTEL 270

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
            L +N                           I       L   T L  L L  + L   
Sbjct: 271 KLGANQ--------------------------ISNISP--LAGLTALTNLELNENQLEDI 302

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
              PI + K L +L +  NN     PV     L  L       N +  S  SS  N+  +
Sbjct: 303 --SPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKV--SDVSSLANLTNI 355

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 421
            +L   +N+++   P         +  L L++ +      +   ++     +       +
Sbjct: 356 NWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 422 GEIPQSLSKCSSLKGLYLNNNNLSGK 447
              P ++S   S     +  N  S  
Sbjct: 413 --APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (272), Expect = 5e-25
 Identities = 71/381 (18%), Positives = 124/381 (32%), Gaps = 89/381 (23%)

Query: 366 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 425
             +  +     D             L   ++   +      L  +  L  +      +  
Sbjct: 9   TQDTPINQIFTDT---ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSI 61

Query: 426 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485
             +   ++L  +  +NN L+   P  L NL  L  I+M  N +    P     L +L  L
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545
            + +N I+   P                            N ++L  L+LS N ++    
Sbjct: 118 TLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISDISA 151

Query: 546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 601
             + GL+ L  L+   N +    P+    L  L+ LD+S N +  +            +L
Sbjct: 152 --LSGLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSNKVSDISV--LAKLTNLESL 204

Query: 602 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
             + N                        +I +I                L+ L  L L+
Sbjct: 205 IATNN------------------------QISDITPLGI-----------LTNLDELSLN 229

Query: 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 721
            N+L       + +LT +  L+L++N ++   PL  S L  +  L L  N++S   P  L
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--L 283

Query: 722 VDLNTLAIFIVAYNNLSGKIP 742
             L  L    +  N L    P
Sbjct: 284 AGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 1e-24
 Identities = 78/428 (18%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            +   L  + + +N     +     L N TNL  LTL ++   I+ +  + +   +L  L
Sbjct: 87  KNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN--QITDIDPLKN-LTNLNRL 139

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTL 120
            +S   ++ +          SL+ L               +    ++ +L+ L +S    
Sbjct: 140 ELSSNTISDI---SALSGLTSLQQLS-------FGNQVTDLKPLANLTTLERLDISS--- 186

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
             N    +   L  L +L+ L   NN +    P  L   T+L  L ++ NQL        
Sbjct: 187 --NKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIGT 238

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
           L  LT++ +L L+NN      +L PL   +KL       N+I+  I+    LT    L +
Sbjct: 239 LASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISN-ISPLAGLT---ALTN 291

Query: 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
           L L+ N    +     + +   L    L    +    P   + + TKL+ L+  N+ ++ 
Sbjct: 292 LELNEN---QLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD 345

Query: 301 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 360
                + +   + +L   +N      P+     L  +    ++  A   +  +   NV  
Sbjct: 346 V--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
              +      L    P  ++    +     ++ N          ++      +      F
Sbjct: 401 PNTVKNVTGALI--APATISD-GGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTF 456

Query: 421 VGEIPQSL 428
            G + Q L
Sbjct: 457 SGTVTQPL 464

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  147 bits (373), Expect = 6e-38
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
            +P       R LD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFV 421
            L L +N+L   IP  +     NL  L +S N +   +   +F  L NL+ L +  N  V
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 422 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 481
               ++ S  +SL+ L L   NL+      L +L GL  + +   ++       F RL  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 482 LQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           L++L+IS      ++ P+C Y L++  + ++   L   +      +   L  L+LSYN +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
           +      +  L +L  + L    L    P     LN L++L++S N L  L  S F +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  140 bits (355), Expect = 1e-35
 Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 65/379 (17%)

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVG 422
           +     +    +P+ +         L L  N +K  +    F+   +L  L L  N    
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
             P + +   +L+ L L +N L          L  L  + + +N +   +   F  L +L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 483 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           + L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  +N
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
                    L +L  L ++H      +         L  L ++  NL  +      +   
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246

Query: 602 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
                                                             L  L  L+LS
Sbjct: 247 --------------------------------------------------LVYLRFLNLS 256

Query: 662 CNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 720
            N +   I   +   L R+Q + L    L    P  F  L ++  L++S N+L+  +   
Sbjct: 257 YNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 721 LVD-LNTLAIFIVAYNNLS 738
           +   +  L   I+  N L+
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (334), Expect = 6e-33
 Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 86/387 (22%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
            I       ++  N +       F +   L+ L+L+ N ++  +         NL  L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 392 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450
            +N LK  I   +F+ L NL  L +  N  V  +        +LK L + +N+L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS- 144

Query: 451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVH 509
                                    F  L+SL+ L +   N++         L  +  + 
Sbjct: 145 ----------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569
           L    ++  +++ +F     L  L++S+     ++         L+ L++ H NL   VP
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 570 IQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 628
               R L  L+ L+LS N +  +  S                                  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------ 270

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHN 687
                                  L  L  + L   +L   + P     L  ++ LN+S N
Sbjct: 271 -----------------------LLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGN 306

Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLS 714
            LT      F ++ ++E+L L  N L+
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (305), Expect = 3e-29
 Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 36/321 (11%)

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 329
           I         +   LE L L  + +     G F    ++   LR L + +N  +  IP+ 
Sbjct: 44  IKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLK-LIPLG 98

Query: 330 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
           +   L +L   +IS N +   +   F ++  L+ L++ +N L   I         +LE L
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 390 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           +L   +L   I +   S L  L  L L   +       S  +   LK L +++      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 508
                    L  + +   +L     +    L  L+ L++S N IS               
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--------------- 261

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
                     ++         L  + L    L    P    GL+ L  LN++ N L    
Sbjct: 262 ---------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 569 PIQLCRLNQLQLLDLSDNNLH 589
                 +  L+ L L  N L 
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-24
 Identities = 64/346 (18%), Positives = 126/346 (36%), Gaps = 52/346 (15%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
              + L L  + +      +         HL+EL ++ N +    P    N  +LR L +
Sbjct: 32  TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGE 225
             N+L   I       L+++ +L +S N       L   +F     LK  +  +N++   
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLV-Y 142

Query: 226 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 285
           I    + +    L+ L+L                              +   P   L + 
Sbjct: 143 I-SHRAFSGLNSLEQLTLEKC--------------------------NLTSIPTEALSHL 175

Query: 286 TKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
             L  L L + ++       F+       RL+ L++S+  +   +         +L   +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLS 230

Query: 342 ISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
           I+   L  ++P  +  ++++L+FL+LS N ++  I   +    + L+ + L    L   +
Sbjct: 231 ITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 401 FSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 445
               F  L  LR L + GN              +L+ L L++N L+
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 60/268 (22%)

Query: 481 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
             ++LD+  N I       F     ++++ L++N++   ++ G F N  +L TL L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 540 LNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
           L   IP  +  GLS L+ L+++ N +   +      L  L+ L++ DN+L  +    F  
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                                L+ L  L
Sbjct: 151 -----------------------------------------------------LNSLEQL 157

Query: 659 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
            L    L   IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWT 745
               +    L    + + NL+  +P   
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 58/347 (16%), Positives = 116/347 (33%), Gaps = 48/347 (13%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 60
                 L L  N          E  +F +LE L L+++   +S ++     F    +L+ 
Sbjct: 31  PTETRLLDLGKNRIKTL--NQDEFASFPHLEELELNEN--IVSAVEP--GAFNNLFNLRT 84

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L +    +  ++    F    +L  LD+   +I      L  + + + +LK L +  + L
Sbjct: 85  LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI---VILLDYMFQDLYNLKSLEVGDNDL 140

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
                 I  +    L  L++L ++  +L       L++   L +L +    +  +I    
Sbjct: 141 ----VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS 195

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
              L  ++ L +S+    +            L      +  +   +    ++     L+ 
Sbjct: 196 FKRLYRLKVLEISHWP-YLDTMTPNCLYGLNLTSLSITHCNLT-AV-PYLAVRHLVYLRF 252

Query: 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
           L+LS N                     +S I         +L    +L+ + LV   LA 
Sbjct: 253 LNLSYN--------------------PISTI------EGSMLHELLRLQEIQLVGGQLAV 286

Query: 301 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
                      LR L+VS N     +   +   + +L    +  N L
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 9e-17
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 60/266 (22%)

Query: 480 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
              + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDN 598
           ++   P   + L  L  L L  N L+  +P+ +   L+ L  LD+S+N +  L+   F +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                                L  L  L
Sbjct: 127 -----------------------------------------------------LYNLKSL 133

Query: 659 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           ++  N LV +I  +    L  ++ L L   NLT       S+L  +  L L +  ++   
Sbjct: 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPE 743
                 L  L +  +++      +  
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTP 218

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 6e-37
 Identities = 82/377 (21%), Positives = 143/377 (37%), Gaps = 34/377 (9%)

Query: 118 STLGTNSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
           +TL T  + I        LA      +    +   +        S+  L V+  ++    
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA--- 57

Query: 177 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 236
           S   + +LT++E L L+ N       + PL N  KL       N+I  +I+   +LT   
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT--- 110

Query: 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 296
            L+ L L+ +   +++    L +  ++    L     + +     L N T L +L +   
Sbjct: 111 NLRELYLNED---NISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES 165

Query: 297 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 356
            +      PI +   L  L ++ N  +   P+     L SL YF   +N +    P    
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VA 218

Query: 357 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLE 416
           N+  L  L + NNK+T   P         L +L +  N +     + +  L  L+ L + 
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 417 GNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 476
            N         L+  S L  L+LNNN L  +    +G L  L  + + +NH+    P   
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 477 CRLDSLQILDISDNNIS 493
             L  +   D ++  I 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 6e-36
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 92/422 (21%)

Query: 326 IPVEIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 380
           +P  I  I     L   +   +   ++   +      +  +  L ++  K+   I     
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 381 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 440
               NLE+L+L+ N +     S + +L  L  L +  N        +L   ++L+ LYLN
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 441 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 500
            +N+S   P  L NL  +  + +  NH    +      +  L  L ++++ +    P   
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 501 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
                                    N + L +L L+YN +    P  +  L+ L +    
Sbjct: 173 -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFK 616
            N +    P  +  + +L  L + +N +  L P    N    T L    N  S  +    
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---- 259

Query: 617 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 676
              ++                              L+ L  L++  N++       + NL
Sbjct: 260 ---AVKD----------------------------LTKLKMLNVGSNQISD--ISVLNNL 286

Query: 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
           +++ +L L++N L          L ++ +L LS N ++   P  L  L+ +     A   
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 737 LS 738
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 2e-35
 Identities = 79/452 (17%), Positives = 153/452 (33%), Gaps = 109/452 (24%)

Query: 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
              L      +    P   A+        +    +T  +       L SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 198 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 257
               S++ +   + L+  +   N+I   I+   +L    +L +L + +N           
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQITD-ISPLSNLV---KLTNLYIGTN----------- 98

Query: 258 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 317
                    +++ I  +    N                                LR L +
Sbjct: 99  ---------KITDISALQNLTN--------------------------------LRELYL 117

Query: 318 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP- 376
           + +N     P+     L  +   N+  N    S  S   N+  L +L ++ +K+    P 
Sbjct: 118 NEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 377 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436
            +L     +L  LSL+ N ++    S + SL +L +     N      P  ++  + L  
Sbjct: 174 ANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 496
           L + NN ++   P  L NL  L  + +  N +          L  L++L++  N IS  +
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DI 280

Query: 497 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 556
                                        N S L +L L+ N L     + I GL+ L+ 
Sbjct: 281 SV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 557 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
           L L+ N++    P+    L+++   D ++  +
Sbjct: 316 LFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (335), Expect = 6e-34
 Identities = 73/386 (18%), Positives = 136/386 (35%), Gaps = 63/386 (16%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
              L      +    PD             L   S+   +      L ++  L++ G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
                Q +   ++L+ L LN N ++   P  L NL  L ++ +  N +          L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           +L+ L ++++NIS   P       +  ++L  N     L      N + L  L ++ + +
Sbjct: 111 NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 598
               P  I  L+ L  L+L +N +E   P  L  L  L       N +  + P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 599 --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656
              +L    N                        KI ++                LS L 
Sbjct: 222 RLNSLKIGNN------------------------KITDLSPLAN-----------LSQLT 246

Query: 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716
            L++  N++       + +LT+++ LN+  N ++       +NL  + SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNE 302

Query: 717 IPRQLVDLNTLAIFIVAYNNLSGKIP 742
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 4e-30
 Identities = 78/439 (17%), Positives = 148/439 (33%), Gaps = 94/439 (21%)

Query: 7   LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 66
             TL          +       +        L  +   ++ + +      S+  L ++G 
Sbjct: 2   AATLATLPAP----INQIFPDADLAEGIRAVLQKA--SVTDVVTQEE-LESITKLVVAGE 54

Query: 67  EVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 126
           +V  +   QG  +  +LE+L++   +I   +        ++  L  L +       N   
Sbjct: 55  KVASI---QGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGT-----NKIT 101

Query: 127 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186
            +   L  L +L+ELY++ +++    P  LAN T +  L++  N     +  SPL ++T 
Sbjct: 102 DIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTG 156

Query: 187 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 246
           +  L ++ +  +    + P+ N + L       N+I   I+   SLT    L   +   N
Sbjct: 157 LNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIED-ISPLASLT---SLHYFTAYVN 209

Query: 247 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 306
                               +++ I  +                                
Sbjct: 210 --------------------QITDITPVANMTR--------------------------- 222

Query: 307 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 366
                L  L + NN      P+     L  L +  I  N +  S  ++  ++  L+ L++
Sbjct: 223 -----LNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNV 272

Query: 367 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 426
            +N+++      L      L  L L+NN L       I  L NL  L L  NH     P 
Sbjct: 273 GSNQISD--ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328

Query: 427 SLSKCSSLKGLYLNNNNLS 445
            L+  S +      N  + 
Sbjct: 329 -LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 3e-25
 Identities = 68/371 (18%), Positives = 138/371 (37%), Gaps = 65/371 (17%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               S+  L +        + + Q +   TNLEYL L  +   I+ +  + +    L NL
Sbjct: 41  EELESITKLVVAGEK----VASIQGIEYLTNLEYLNL--NGNQITDISPLSN-LVKLTNL 93

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +   ++  +       +  +L  L +    I+  +        ++  +  L+L  +   
Sbjct: 94  YIGTNKITDI---SALQNLTNLRELYLNEDNISDISPL-----ANLTKMYSLNLGANHNL 145

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
           ++ S      L  +  L  L +  + ++   P  +AN T L  L +++NQ+      SPL
Sbjct: 146 SDLS-----PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPL 195

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LTS+       N       + P+ N ++L      NN+I   ++   +L+   QL  L
Sbjct: 196 ASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKITD-LSPLANLS---QLTWL 248

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
            + +N                        I  I        ++ TKL+ L + ++ ++  
Sbjct: 249 EIGTN-----------------------QISDINAV-----KDLTKLKMLNVGSNQISDI 280

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
               +++  +L  L ++NN         IG  L +L    +S N +    P    ++  +
Sbjct: 281 --SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 362 QFLDLSNNKLT 372
              D +N  + 
Sbjct: 336 DSADFANQVIK 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (344), Expect = 8e-35
 Identities = 62/323 (19%), Positives = 121/323 (37%), Gaps = 18/323 (5%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
           L+ +     +++   +    F     +    + +   N+  +  +P  + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N L   + 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 402 SRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
             IF     L  L +  N+       +    +SL+ L L++N L+  +   L  +  L H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 461 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 520
             +  N L            +++ LD S N+I+         + +  + L  N L     
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT---D 240

Query: 521 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 580
                N   LV +DLSYN L   +      + +L  L +++N L   + +    +  L++
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 581 LDLSDNNLHGLIPSCFDNTTLHE 603
           LDLS N+L  +  +      L  
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (336), Expect = 9e-34
 Identities = 81/391 (20%), Positives = 147/391 (37%), Gaps = 62/391 (15%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 390 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 507
                N   L  + M  N+LE  I  + F    SLQ L +S N ++    S     S+  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI--PSLFH 190

Query: 508 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 567
            ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  +
Sbjct: 191 ANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-D 240

Query: 568 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 623
               L     L  +DLS N L  ++   F        L+ S N   + +   +       
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------ 293

Query: 624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 683
                                       +  L  LDLS N L+ H+        R++ L 
Sbjct: 294 ----------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           L HN++  T+    S    +++L LS+N   
Sbjct: 325 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (303), Expect = 2e-29
 Identities = 74/462 (16%), Positives = 147/462 (31%), Gaps = 100/462 (21%)

Query: 128 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 187
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 247
           E L L++      +          ++      N I       H       L  L L  N 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERND 128

Query: 248 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 307
                                     +   P  +  N  KL  L + N++L         
Sbjct: 129 --------------------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
           +   L+ L +S+N    H+ +    ++PSL + N+S N L     S+    I ++ LD S
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 213

Query: 368 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427
           +N +   +   +    V L  L L +N+L     + + +   L  + L  N     +   
Sbjct: 214 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
             K   L+ LY++NN L                           + +    + +L++LD+
Sbjct: 268 FVKMQRLERLYISNNRLVA-------------------------LNLYGQPIPTLKVLDL 302

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
           S N++   +                                 L  L L +N +  ++   
Sbjct: 303 SHNHLL-HVER------------------------NQPQFDRLENLYLDHNSIV-TLK-- 334

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           +     L +L L+HN+ +      L     +    + D + H
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 6e-29
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 27/319 (8%)

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
           I  +L        ++++              L   + +    + +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 484 ILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           +L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 543 SIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TT 600
           S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 601 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 659
            + SYN  S+            S         I  +            +G V   L  L 
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASH------NSINVV------------RGPVNVELTILK 232

Query: 660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
           L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   +  
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 720 QLVDLNTLAIFIVAYNNLS 738
               + TL +  +++N+L 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (263), Expect = 3e-24
 Identities = 71/401 (17%), Positives = 140/401 (34%), Gaps = 81/401 (20%)

Query: 69  NGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRIL 128
             V  G       + + +  + + +         + +S   ++ L+L+   +      I 
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQI----EEID 85

Query: 129 DQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 188
                    +Q+LY+  N +R   P    N   L +L +  N L+ S+      +   + 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 189 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYG 248
            L +SNN+      +E                          +      L++L LSSN  
Sbjct: 145 TLSMSNNNLE---RIED------------------------DTFQATTSLQNLQLSSN-- 175

Query: 249 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 308
                              L+H+  +   P+        L    +  + L+      +  
Sbjct: 176 ------------------RLTHV-DLSLIPS--------LFHANVSYNLLST-----LAI 203

Query: 309 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 368
              +  LD S+N+    +    G +   L    +  N L  +  +   N   L  +DLS 
Sbjct: 204 PIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 257

Query: 369 NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 428
           N+L  +I  H  +    LE L +SNN L   +      +  L+ L L  NH +  + ++ 
Sbjct: 258 NELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 429 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469
            +   L+ LYL++N++   +   L     L+++ +  N  +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 76/411 (18%), Positives = 141/411 (34%), Gaps = 65/411 (15%)

Query: 10  LHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 69
             +  +  T  +    E     N + +T  +S++   L  ++   F  ++ L+++  ++ 
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 82

Query: 70  GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD 129
             +    F +  +++ L M F  I         + +++P L  L L  + L    S +  
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDL----SSLPR 134

Query: 130 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 189
                   L  L + NN+L          TTSL+ L +S N+LT       L  + S+  
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFH 190

Query: 190 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF--QLKSLSLSSNY 247
             +S N       L  L     ++  DA +N IN        +      +L  L L  N 
Sbjct: 191 ANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQHN- 236

Query: 248 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 307
                                 ++            N   L  + L  + L      P  
Sbjct: 237 ----------------------NLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
             +RL  L +SNN     + +     +P+L   ++S N L   +  +      L+ L L 
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 368 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
           +N +   +          L+ L+LS+N       S     RN+    ++  
Sbjct: 327 HNSIV-TLKLST---HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 27/219 (12%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
              PSL   ++  N  +        L     +E L    S   I++++    +   L  L
Sbjct: 183 SLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--SHNSINVVRG--PVNVELTIL 231

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +     N +       ++  L  +D+ +  +      +      M  L+ L +S     
Sbjct: 232 KLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN---- 281

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    L+    P+  L+ L + +N L   +         L  L +  N +  ++  S  
Sbjct: 282 -NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH 338

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 220
             L     L LS+N +          N ++  + DA  +
Sbjct: 339 HTLK---NLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 39/201 (19%)

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 598
            I   +        +++     +     +   LN  +++   ++ +  L  +  D+    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
             L+ +                          +I EI  +                +  L
Sbjct: 72  ELLNLNDL------------------------QIEEIDTYAFAY---------AHTIQKL 98

Query: 659 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
            +  N +  ++PP +  N+  +  L L  N+L+      F N   + +L +S N L    
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 718 PRQLVDLNTLAIFIVAYNNLS 738
                   +L    ++ N L+
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (340), Expect = 9e-35
 Identities = 53/393 (13%), Positives = 104/393 (26%), Gaps = 81/393 (20%)

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
                      +                   D +         +       N +  + + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 394 NSLKGHIFS-RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 452
            +LK         +      L L       + P    + S L+ + ++   L  ++P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 453 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512
               GL+ + + +N L   +P     L+ L+ L I        LP               
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG----- 177

Query: 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 572
                           +L +L L +  +  S+P  I  L  L  L + ++ L   +   +
Sbjct: 178 ----------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 573 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 632
             L +L+ LDL         P  F                                    
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG---------------------------------- 251

Query: 633 LEIFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 691
                               + L  L L  C+ L+  +P  I  LT+++ L+L       
Sbjct: 252 -------------------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 724
            +P   + L     + +  +  +     + V  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (308), Expect = 1e-30
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 27/329 (8%)

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 365
            H       L    +         +          + +             N    Q   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 366 LSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 424
            +   L     D L          L L +  L      + F L +L+ + ++    + E+
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI---------VMPKNHLEGPIPVE 475
           P ++ + + L+ L L  N L   +P  + +L  L+ +          +P+         E
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 476 FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 534
              L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELD 235

Query: 535 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 594
           L       + P    G + L  L L   +    +P+ + RL QL+ LDL        +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 595 CFDN----TTLHESYNNNSSPDKPFKTSF 619
                     +    +  +  D+    + 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 65/382 (17%), Positives = 108/382 (28%), Gaps = 85/382 (22%)

Query: 378 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 437
           H        E L    ++        +   +          H       S    ++ +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIE 61

Query: 438 YLNNNNLSGKIPRWLGNLK--GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 495
                 L       L +    G   + +    L    P +  RL  LQ + I    +   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 555
           LP                              + L TL L+ N L  ++P  I  L++L 
Sbjct: 119 LPDTM------------------------QQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 556 HLNLAHNNLEGEVPIQLCR---------LNQLQLLDLSDNNLHGLIPSCFDN----TTLH 602
            L++       E+P  L           L  LQ L L    +  L P+   N     +L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLK 212

Query: 603 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
              +  S+          +I                              L  L  LDL 
Sbjct: 213 IRNSPLSALGP-------AIHH----------------------------LPKLEELDLR 237

Query: 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 721
               + + PP  G    ++ L L   +   T+PL    L  +E LDL       ++P  +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 722 VDLNTLAIFIVAYNNLSGKIPE 743
             L    I +V   +L  ++ +
Sbjct: 298 AQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 2e-26
 Identities = 56/361 (15%), Positives = 106/361 (29%), Gaps = 57/361 (15%)

Query: 150 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELR-LSNNHFRIPVSLEPLF 207
           GS      +++    L            S+ L      + + +   N       S     
Sbjct: 2   GSSHHHHHHSSGRENLYFQ--------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA 53

Query: 208 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 267
           N +  +I       +    +     T      +L L S                      
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQP-GRVALELRSVP-------------------- 92

Query: 268 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGH 325
                 + +FP+      + L+ + +    L     LP  +     L  L ++ N  +  
Sbjct: 93  ------LPQFPDQA-FRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLR-A 141

Query: 326 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF---------LQFLDLSNNKLTGEIP 376
           +P  I   L  L   +I        +P    +            LQ L L    +   +P
Sbjct: 142 LPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 377 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436
             +A    NL+ L + N+ L   +   I  L  L  L L G   +   P      + LK 
Sbjct: 200 ASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 496
           L L + +    +P  +  L  L+ + +        +P    +L +  I+ +  +  +   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 497 P 497
            
Sbjct: 318 Q 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 4e-25
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 62/328 (18%)

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
           +G         S  + LY   +         L   +   +    + H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLHGQLKE--GTFFNCSSLVTLDL 535
           + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 595
               L   +PD +   + L  L LA N L   +P  +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655
             +T     +                                              L  L
Sbjct: 170 LASTDASGEHQG--------------------------------------------LVNL 185

Query: 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
             L L    +   +P  I NL  +++L + ++ L+  +     +L  +E LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 716 KIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
             P        L   I+   +    +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 4e-24
 Identities = 58/345 (16%), Positives = 111/345 (32%), Gaps = 38/345 (11%)

Query: 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 168
             + L   GST         D     L+  Q  Y  + +      W  AN+ + +I   +
Sbjct: 13  GRENLYFQGST---ALRPYHDV----LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 169 FNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
              L  +              L L +    + P   +  F  S L+        +    +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 287
                     L++L+L+ N       P  +   + L+E  +     + E P  L   +  
Sbjct: 122 TMQQFA---GLETLTLARN--PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
            E   LVN                L+ L +     +  +P  I + L +L    I  + L
Sbjct: 177 GEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL 218

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 407
             ++  +  ++  L+ LDL         P         L+ L L + S    +   I  L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 452
             L  L L G   +  +P  +++  +   + +   +L  ++ +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 4e-23
 Identities = 50/346 (14%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
            +  + LY   +         L+        D +        S+    +  + +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTG 65

Query: 195 NHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
              +     LE           + ++  +    +++  L+    L+ +++ +        
Sbjct: 66  RALKATADLLEDA-TQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG------ 115

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKR 311
                               + E P+  ++    LE L L  + L     LP  I S  R
Sbjct: 116 --------------------LMELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNR 151

Query: 312 LRFLDVSNNNFQGHIPVEIGDI--------LPSLVYFNISMNALDGSIPSSFGNVIFLQF 363
           LR L +        +P  +           L +L    +    +  S+P+S  N+  L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           L + N+ L+  +   +      LE L L   +   +          L+ L+L+    +  
Sbjct: 211 LKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469
           +P  + + + L+ L L       ++P  +  L     I++P +   
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 56/386 (14%), Positives = 104/386 (26%), Gaps = 70/386 (18%)

Query: 25  QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 84
              H+ +  E L    S+        +   +    N   +                 +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWRQANSN 56

Query: 85  HLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 143
           +  +         +   ++ + + P    L L    L              L+HLQ + I
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTI 111

Query: 144 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 203
           D   L   LP  +     L  L ++ N L  ++ +S +  L  + EL +           
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC-------- 160

Query: 204 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 263
                  +L         +    + S        L+SL L                    
Sbjct: 161 ------PELTELP---EPL-ASTDASGEHQGLVNLQSLRLEWT----------------- 193

Query: 264 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNN 321
                     I   P   + N   L+ L + N  L+    L   IH   +L  LD+    
Sbjct: 194 ---------GIRSLPAS-IANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCT 240

Query: 322 FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 381
              + P   G     L    +   +   ++P     +  L+ LDL        +P  +A 
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 382 CCVNLEFLSLSNNSLKGHIFSRIFSL 407
                  + +  +        R  + 
Sbjct: 300 -LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 5e-09
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 53/255 (20%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           + P    L L S           +    ++L+++T+D + L   L  ++   F  L+ L+
Sbjct: 79  TQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLT 133

Query: 63  MSGC-------------------------------EVNGVLSGQGFPHFKSLEHLDMRFA 91
           ++                                  +    +        +L+ L + + 
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 92  RIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 151
            I    S    I   + +LK L +       +    L   +  L  L+EL +       +
Sbjct: 194 GI---RSLPASIAN-LQNLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRN 244

Query: 152 LPWCLANTTSLRILDVS-FNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFN 208
            P        L+ L +   + L  ++    +  LT +E+L L       R+P  +  L  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLL-TLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQL-- 300

Query: 209 HSKLKIFDAKNNEIN 223
                I     +   
Sbjct: 301 -PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 24/182 (13%)

Query: 2   GSFPSLNTLHLESNNFTATL-------TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI 54
            S   L  L + +      L         + E     NL+ L L+ + +  SL  SI ++
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL 205

Query: 55  FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES---MPSLK 111
             +LK+L +    ++ +       H   LE LD+R        + L+           LK
Sbjct: 206 -QNLKSLKIRNSPLSALGPAIH--HLPKLEELDLR------GCTALRNYPPIFGGRAPLK 256

Query: 112 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 171
            L L       ++   L   +  L  L++L +        LP  +A   +  I+ V  + 
Sbjct: 257 RLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 172 LT 173
             
Sbjct: 313 QA 314

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (347), Expect = 2e-34
 Identities = 72/411 (17%), Positives = 143/411 (34%), Gaps = 47/411 (11%)

Query: 329 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 388
           EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 389 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIK 506
                  +G ++I +  N +     ++      +Q LD+  N I     +       +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 567 EVPIQLCRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 625
            +   L     L+  DL  N  H G +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 626 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 685
                 +     +  +++   +  R+++L                           L+  
Sbjct: 288 ------LGHYGAYCCEDLPAPFADRLIAL--------------------KRKEHALLSGQ 321

Query: 686 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
            +     +     N      +D    +    +  Q+       I +     
Sbjct: 322 GSETER-LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (341), Expect = 8e-34
 Identities = 78/483 (16%), Positives = 154/483 (31%), Gaps = 32/483 (6%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
           N          L + S L+  D  NN +         L     +++L  ++N    V+  
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCS 117

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLR 313
           +        K   L++ K I    +      +++++L L  + +    F     S   L 
Sbjct: 118 RG----QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 373
            L++  N     +  ++      L   ++S N L   +   F +   + ++ L NNKL  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
            I   L     NLE   L  N        R F  +N R   +          Q+  +C+ 
Sbjct: 228 LIEKALRF-SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG----PIPVEFCRLDSLQILDISD 489
               +            +   L  L+         +G     +  E       + +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 490 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
                 +        +   +   K  L  +         + L             +    
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQI-ELQHAT 403

Query: 549 DGLSQLSHL-NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
           +  S L  L  +     E  V  Q  + N ++  D+  +    L         L+   + 
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

Query: 608 NSS 610
             +
Sbjct: 464 ALA 466

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (324), Expect = 1e-31
 Identities = 70/459 (15%), Positives = 146/459 (31%), Gaps = 58/459 (12%)

Query: 151 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFN 208
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 209 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 268
            +KL++ +  +N +  E  +  SL+    L++L L++N                ++E   
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS---TLRTLDLNNN---------------YVQE--- 94

Query: 269 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 328
                        L     +E L+  N++++   R+     +  + + ++NN       +
Sbjct: 95  -------------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 329 EIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 387
           + G     + Y ++ +N +D  +      +   L+ L+L  N +  ++   +      L+
Sbjct: 139 DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-G 446
            L LS+N L   +     S   + W+ L  N  V  I ++L    +L+   L  N    G
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 447 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GSLPSCFYP 502
            +  +    + +Q +             E C +    +                      
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 562
              +   LS      +  E    N +    +D         I            L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
            L+ +V        +L            L  +  + + L
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-27
 Identities = 62/406 (15%), Positives = 134/406 (33%), Gaps = 58/406 (14%)

Query: 385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444
             +   ++++SLK  + S   S  N++ L L GN         L+  + L+ L L++N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 445 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 504
              +   L +L  L+ + +  N+++     E     S++ L  ++NNIS    S      
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGK- 122

Query: 505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNN 563
            K ++L+ N +   L++      S +  LDL  N ++  +  +       L HLNL +N 
Sbjct: 123 -KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 564 LEG---------------------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602
           +                        +  +      +  + L +N L  +  +   +  L 
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 603 E------------------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
                                    +  K      +    +      +     +  +++ 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 645 YAYQGRVLSL----LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 700
             +  R+++L     A L    ++    +  +  N  R + ++         I       
Sbjct: 301 APFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 701 RHIESLDLSYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 743
           +   +L+     L  ++    R   +L+      V    L     E
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (289), Expect = 3e-27
 Identities = 55/360 (15%), Positives = 116/360 (32%), Gaps = 57/360 (15%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           EI Q+ ++    K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 598
            +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 599 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
              L+  YN                         I ++                 + L  
Sbjct: 171 LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 777
            R         +  VA   +   +     +  T     + G      LP P    L  + 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 69/487 (14%), Positives = 147/487 (30%), Gaps = 64/487 (13%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            S  ++  L L  N  +    +  +L  FT LE L L  SS  +     + S   +L+ L
Sbjct: 31  QSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNL--SSNVLYETLDLES-LSTLRTL 85

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            ++   V      Q      S+E L      I+      ++        K + L+ + + 
Sbjct: 86  DLNNNYV------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLANNKI- 132

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISSSP 180
              + + D      + +Q L +  N++   +     A++ +L  L++ +N +        
Sbjct: 133 ---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKG 186

Query: 181 LVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
            V    ++ L LS+N    +    +     + +     +NN++               L+
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLIEKALRFSQ---NLE 240

Query: 240 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 299
              L  N     T   F      ++      +K +           T   +     + L 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 300 GPF--RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 357
            PF  RL     K    L    +  +                           +     N
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETE--------------------------RLECEREN 334

Query: 358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG 417
               + +D    +    + D + +       L     +L   + +   +   L   L + 
Sbjct: 335 QARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 418 NHFVGEIPQSLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 476
              + E+  +  + S L+ L  +        + +       ++   M ++     +  E 
Sbjct: 394 VGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEEN 451

Query: 477 CRLDSLQ 483
            RL  L 
Sbjct: 452 ARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 65/476 (13%), Positives = 145/476 (30%), Gaps = 72/476 (15%)

Query: 28  HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 87
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 88  MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 147
           +    +           ES+ +L+ L L+ + +           L     ++ L+  NN+
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE---------LLVGPSIETLHAANNN 110

Query: 148 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF 207
           +   +    +     + + ++ N++T  +        + ++ L L  N     V+   L 
Sbjct: 111 IS-RVS--CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELA 165

Query: 208 NH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 266
                L+  + + N I  ++          +LK+L LSSN                    
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVVFA---KLKTLDLSSN-------------------- 201

Query: 267 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQG 324
               +  +G       ++   + ++ L N+ L     +   +   + L   D+  N F  
Sbjct: 202 ---KLAFMGP----EFQSAAGVTWISLRNNKLV---LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 325 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 384
               +       +    ++   +      +                   ++P   A   +
Sbjct: 252 GTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLI 308

Query: 385 NLEFLSLSNNSLKGHIFSRI----FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 440
            L+    +  S +G    R+     +    R +      +   I Q   +  +   L   
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 441 NNNLSGKIPRWLGNLKGLQHI---VMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
              L  ++         L       + +  L+            LQ+L        
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE----EQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 598
           +I +     ++     +  ++L+  +         ++ LDLS N L  +  +        
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
             L+ S N                         + E  +  +           LS L  L
Sbjct: 61  ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
           DL+ N +      ++     I+TL+ ++NN++          ++   + L+ NK++    
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRD 137

Query: 719 RQLVDLNTLAIFIVAYNNLS 738
                 + +    +  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (330), Expect = 1e-33
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 19/300 (6%)

Query: 329 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 388
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 389 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG-SLPSCFYPL-SIK 506
                  +G ++I +  N +     ++      +Q LD+  N I   +         +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 567 EVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 625
            +   L     L+  DL  N  H   +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (297), Expect = 3e-29
 Identities = 56/365 (15%), Positives = 116/365 (31%), Gaps = 57/365 (15%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           EI Q+ +     K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 598
            +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 599 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
              L+  YN                         I ++                 + L  
Sbjct: 171 LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 777
            R         +  VA   +  K+     +  T     + G      LP P    L  + 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 778 EASTS 782
                
Sbjct: 312 HHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (276), Expect = 2e-26
 Identities = 57/351 (16%), Positives = 119/351 (33%), Gaps = 72/351 (20%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
           N          L + S L+  D  NN +         L     +++L  ++N        
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN-------- 109

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 314
                        +S +                                      +  + 
Sbjct: 110 ------------NISRV---------------------------------SCSRGQGKKN 124

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTG 373
           + ++NN       ++ G     + Y ++ +N +D  +      +   L+ L+L  N +  
Sbjct: 125 IYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
           ++   +      L+ L LS+N L   +     S   + W+ L  N  V  I ++L    +
Sbjct: 183 DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 434 LKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
           L+   L  N    G +  +    + +Q +             E C + +L 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 9e-26
 Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 49/328 (14%)

Query: 404 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 463
             +    +   +  +     +        ++K L L+ N LS      L     L+ + +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 523
             N L   +      L +L+ LD+++N +   L       SI+ +H + N +  ++    
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNIS-RVSCSR 118

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLD 582
                    + L+ N +           S++ +L+L  N ++           + L+ L+
Sbjct: 119 G---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 583 LSDNNLHGLIPSCFDN--TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT 640
           L  N ++ +          TL  S N  +     F++                       
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS----------------------- 212

Query: 641 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSN 699
                       + +  + L  NKLV  I   +     ++  +L  N    GT+   FS 
Sbjct: 213 -----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 700 LRHIESLDLSYNKLSGKIPRQLVDLNTL 727
            + ++++     K       +   + TL
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 6e-25
 Identities = 61/404 (15%), Positives = 113/404 (27%), Gaps = 94/404 (23%)

Query: 158 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 217
           N    +I  V+ + L     +S      +++EL LS N       +              
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS---QISA------------ 51

Query: 218 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 277
                     +    T   +L+ L+LSSN                        +    + 
Sbjct: 52  ---------ADLAPFT---KLELLNLSSN-----------------------VLYETLDL 76

Query: 278 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 337
                E+ + L  L L N+ +       +     +  L  +NNN    +           
Sbjct: 77  -----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---GQGK 122

Query: 338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 397
               ++ N +        G    +Q+LDL  N++       LA     LE L+L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 398 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 457
             +  ++     L+ L L  N     +       + +  + L NN L             
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL----------- 228

Query: 458 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517
                         I        +L+  D+  N         F+  + +   ++K  +  
Sbjct: 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK- 273

Query: 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 561
           +L       C+                  + D L  L H +  H
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 28  HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 87
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 88  MRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSS---------RILDQGLCPL 135
           +    +           ES+ +L+ L L+      L    S          I        
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
              + +Y+ NN +           + ++ LD+  N++     +       ++E L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
                  ++     +KLK  D  +N++     E  S      +  +SL +N    V   K
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNN--KLVLIEK 231

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 293
            L     L+  +L                N +++ +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 23/236 (9%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            S  +L TL L +N          EL    ++E L    ++ +IS +    S     KN+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHA--ANNNISRVSC--SRGQGKKNI 125

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            ++  ++   L          +++LD++   I    +F ++   S  +L++L+L      
Sbjct: 126 YLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTLEHLNLQY---- 178

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    +   +   A L+ L + +N L   +     +   +  + +  N+L   I  + L
Sbjct: 179 -NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-L 233

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
               ++E   L  N F      +    + +++    +  +     NE     P   
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 669 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 728
           I     N  R +   ++ ++L   +     +  +++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 729 IFIVAYNNLS 738
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (327), Expect = 4e-32
 Identities = 100/581 (17%), Positives = 177/581 (30%), Gaps = 138/581 (23%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
              LQE    +++L   +P    N  S      ++++   +           +   RL +
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSNYGDSVTF 253
              R            +    +  N  +        SL      L+SL  S N       
Sbjct: 68  CLDR------------QAHELELNNLGL-------SSLPELPPHLESLVASCN------- 101

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 313
                               + E P         L+ L + N++L     LP      L 
Sbjct: 102 -------------------SLTELPELP----QSLKSLLVDNNNLKALSDLP----PLLE 134

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 373
           +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+F+   NN+L  
Sbjct: 135 YLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
           E+P+        L  +   NNSLK  +        +L  ++   N    E    L     
Sbjct: 187 ELPELQN--LPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPF 238

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
           L  +Y +NN L   +P    +L+ L    +  N+L   +P     L  L + +   + +S
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553
              P+      +  ++ S N +             SL  L++S N L   +P       +
Sbjct: 294 ELPPN------LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPALP---PR 338

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 613
           L  L  + N+L  EVP        L+ L +  N L            L  + +    P+ 
Sbjct: 339 LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673
           P                                        L  L +  N L    P   
Sbjct: 395 PQN--------------------------------------LKQLHVETNPLR-EFPDIP 415

Query: 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
            ++     L ++   +             +E     ++   
Sbjct: 416 ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (309), Expect = 7e-30
 Identities = 91/496 (18%), Positives = 164/496 (33%), Gaps = 101/496 (20%)

Query: 95  LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 154
              +  ++          L L+   L +              HL+ L    N L   LP 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELP--------PHLESLVASCNSLT-ELPE 108

Query: 155 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 214
              +  SL + + +   L+             +E L +SNN       L  L N S LKI
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 215 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 274
            D  NN +  ++ +         L+ ++  +N                    +L  +  +
Sbjct: 158 IDVDNNSLK-KLPDLPP-----SLEFIAAGNN--------------------QLEELPEL 191

Query: 275 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 334
              P         L  +Y  N+SL     LP+     L  +   NN        E+ + L
Sbjct: 192 QNLPF--------LTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN-L 236

Query: 335 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394
           P L       N L  ++P    +   L+ L++ +N LT ++P+       +L FL +S N
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSEN 287

Query: 395 SLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
                  S +  L  NL +L    N     +        SL+ L ++NN L  ++P    
Sbjct: 288 IF-----SGLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPP 337

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
            L   + ++   NHL   +P       +L+ L +  N +    P     +   +++    
Sbjct: 338 RL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573
            +             +L  L +  N L    PD       +  L +    +         
Sbjct: 390 EV--------PELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHE 437

Query: 574 RLNQLQLLDLSDNNLH 589
             ++L+      ++ H
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 1e-27
 Identities = 116/559 (20%), Positives = 200/559 (35%), Gaps = 115/559 (20%)

Query: 182 VHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
           V  T ++E    +++   +PV      N      +    +E        +    +  +  
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
           L    +               +  E EL+++  +   P         LE L    +SL  
Sbjct: 65  LRDCLD--------------RQAHELELNNLG-LSSLPELP----PHLESLVASCNSLT- 104

Query: 301 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 360
              LP    + L+ L V NNN +      + D+ P L Y  +S N L+  +P    N  F
Sbjct: 105 --ELP-ELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSF 154

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
           L+ +D+ NN L  ++PD       +LEF++  NN L+      + +L  L  +  + N  
Sbjct: 155 LKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 207

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
             ++P       SL+ +   NN L       L NL  L  I    N L+  +P       
Sbjct: 208 K-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP--- 257

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           SL+ L++ DN ++  LP    P S+  + +S+N+    L E       +L  L+ S N +
Sbjct: 258 SLEALNVRDNYLT-DLPEL--PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEI 309

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
             S+ D       L  LN+++N L  E+P       +L+ L  S N+L  +     +   
Sbjct: 310 R-SLCD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQ 361

Query: 601 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 659
           LH  YN     PD P                                            D
Sbjct: 362 LHVEYNPLREFPDIPESVE----------------------------------------D 381

Query: 660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
           L  N  +  +P    NL   + L++  N L    P    ++   E L ++  ++      
Sbjct: 382 LRMNSHLAEVPELPQNL---KQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEF 434

Query: 720 QLVDLNTLAIFIVAYNNLS 738
                + L   +  +++  
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 6e-25
 Identities = 73/374 (19%), Positives = 124/374 (33%), Gaps = 75/374 (20%)

Query: 352 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 411
           P +  N  FLQ     ++ LT E+P        +      + +  + +        R + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 412 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 471
              L                     L LNN  LS  +P    +L   + +V   N L   
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-E 105

Query: 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 531
           +P     L SL + + +   +S   P       ++ + +S N L  +L E    N S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLE-KLPE--LQNSSFLK 156

Query: 532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
            +D+  N L   +PD       L  +   +N LE E+P +L  L  L  +   +N+L  L
Sbjct: 157 IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210

Query: 592 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 651
                   ++    N              +                              
Sbjct: 211 PDLPLSLESIVAGNNILEELP-------ELQN---------------------------- 235

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           L  L  +    N L   +P    +L   + LN+  N LT  +P    +L  ++  +  ++
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFS 290

Query: 712 KLSGKIPRQLVDLN 725
            LS ++P  L  LN
Sbjct: 291 GLS-ELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 5e-21
 Identities = 88/492 (17%), Positives = 162/492 (32%), Gaps = 128/492 (26%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
             P L +L    N+ T      +   +  +L     +  +L          + P L+ L 
Sbjct: 89  LPPHLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKALS--------DLPPLLEYLG 137

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           +S  ++  +       +   L+ +D+         + L+ + +  PSL++++        
Sbjct: 138 VSNNQLEKLPE---LQNSSFLKIIDVDN-------NSLKKLPDLPPSLEFIAAGN----- 182

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
           N    L + L  L  L  +Y DNN L+  LP    +   L  +    N L        L 
Sbjct: 183 NQLEELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE---ELPELQ 234

Query: 183 HLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
           +L  +  +   NN  + +P           L+  + ++N +        SLT       L
Sbjct: 235 NLPFLTTIYADNNLLKTLPDLP------PSLEALNVRDNYLTDLPELPQSLT------FL 282

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
            +S N    ++                              E    L +L          
Sbjct: 283 DVSENIFSGLS------------------------------ELPPNLYYLNA-------- 304

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
                           S+N  +      + D+ PSL   N+S N L   +P+       L
Sbjct: 305 ----------------SSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---L 339

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 421
           + L  S N L  E+P+       NL+ L +  N L+        S+ +LR      N  +
Sbjct: 340 ERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHL 388

Query: 422 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 481
            E+P+      +LK L++  N L  + P    +++ L+   M    +  P        D 
Sbjct: 389 AEVPEL---PQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDK 441

Query: 482 LQILDISDNNIS 493
           L+      ++  
Sbjct: 442 LEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 7e-21
 Identities = 62/345 (17%), Positives = 120/345 (34%), Gaps = 56/345 (16%)

Query: 403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
           R  S   L+  L   ++   E+P       S    Y   +      P   G  + +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 463 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 522
           +             C       L++++  +S SLP     L  + +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPELPPHL--ESLVASCNSLT-ELPEL 109

Query: 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 582
              +  SL+  + +   L+   P        L +L +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 583 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK----TSFSISGPQGSVEKKILEIFEF 638
           + +N+L  L         +    N      +       T+             + ++ + 
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN------NSLKKLPDL 213

Query: 639 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 698
                           L  +    N L     P++ NL  + T+   +N L  T+P    
Sbjct: 214 -------------PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
           +L   E+L++  N L+  +P     L  L +    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 60/372 (16%), Positives = 112/372 (30%), Gaps = 89/372 (23%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
              PSL  +   +N     L    EL N   L  +  D++SL       +  +  SL+++
Sbjct: 170 DLPPSLEFIAAGNNQ----LEELPELQNLPFLTAIYADNNSLK-----KLPDLPLSLESI 220

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
                 +  +       +   L  +         + + L+ + +  PSL+ L++      
Sbjct: 221 VAGNNILEELPE---LQNLPFLTTIY-------ADNNLLKTLPDLPPSLEALNVRD---- 266

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    L +    L  L       + L    P       +L  L+ S N++         
Sbjct: 267 -NYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDL--- 315

Query: 182 VHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
               S+EEL +SNN    +P          +L+   A  N +  E+ E         LK 
Sbjct: 316 --PPSLEELNVSNNKLIELPALP------PRLERLIASFNHLA-EVPELPQ-----NLKQ 361

Query: 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 300
           L +  N                           + EFP+        +E L + +     
Sbjct: 362 LHVEYN--------------------------PLREFPDIP----ESVEDLRMNSHLAEV 391

Query: 301 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 360
           P        + L+ L V  N  +   P        S+    ++   +      +      
Sbjct: 392 PELP-----QNLKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTDK 441

Query: 361 LQFLDLSNNKLT 372
           L+     ++   
Sbjct: 442 LEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 54/247 (21%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           + + P L T++ ++N                +LE L + D+      L  +  +  SL  
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDL------PPSLEALNVRDNY-----LTDLPELPQSLTF 281

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L +S    +G+          +L +L+     I       + + +  PSL+ L++S    
Sbjct: 282 LDVSENIFSGLSE-----LPPNLYYLNASSNEI-------RSLCDLPPSLEELNVSN--- 326

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
             N    L         L+ L    N L   +P    N   L+ L V +N L       P
Sbjct: 327 --NKLIELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIP 376

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLK 239
                S+E+LR++++   +P           LK    + N +                ++
Sbjct: 377 ----ESVEDLRMNSHLAEVPELP------QNLKQLHVETNPLR-------EFPDIPESVE 419

Query: 240 SLSLSSN 246
            L ++S 
Sbjct: 420 DLRMNSE 426

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  130 bits (328), Expect = 1e-31
 Identities = 80/390 (20%), Positives = 144/390 (36%), Gaps = 60/390 (15%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 390 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 448
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 81  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 508
                N   L  + M  N+LE      F    SLQ L +S N ++    S    L     
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHA 197

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
           ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + 
Sbjct: 198 NVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DT 247

Query: 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGP 624
              L     L  +DLS N L  ++   F        L+ S N   + +   +        
Sbjct: 248 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------- 299

Query: 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 684
                                      +  L  LDLS N L+ H+        R++ L L
Sbjct: 300 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
            HN++  T+    S    +++L LS+N   
Sbjct: 332 DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (307), Expect = 5e-29
 Identities = 100/592 (16%), Positives = 177/592 (29%), Gaps = 143/592 (24%)

Query: 128 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 187
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 247
           E L L++                          EI+              ++ L +  N 
Sbjct: 78  ELLNLNDLQIE----------------------EIDTYAFAYAH-----TIQKLYMGFN- 109

Query: 248 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 307
                                     I   P  + +N   L  L L              
Sbjct: 110 -------------------------AIRYLPPHVFQNVPLLTVLVL-------------- 130

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
                       N+    +P  I    P L   ++S N L+     +F     LQ L LS
Sbjct: 131 ----------ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 368 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427
           +N+LT  +   L     +L   ++S N L     S +     +  L    N     +   
Sbjct: 180 SNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 229

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
           +     L  L L +NNL+     WL N  GL  + +  N LE  +   F ++  L+ L I
Sbjct: 230 V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
           S+N +  +L                                +L  LDLS+N+L   +   
Sbjct: 286 SNNRLV-ALN------------------------LYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
                +L +L L HN++     ++L   + L+ L LS N+       C     L  +   
Sbjct: 320 QPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVAR 371

Query: 608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 667
            +  D             G              K     Y  R+L  +A   +       
Sbjct: 372 PAVDDADQHCKIDYQLEHG-----------LCCKESDKPYLDRLLQYIALTSVVEK---- 416

Query: 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
            +    G  +   T+N   +            L+  E L+   N+L  ++ +
Sbjct: 417 -VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 1e-27
 Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 27/320 (8%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
            I  +L        ++++              L   + +    + +             +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 483 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           ++L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 542 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-T 599
            S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +  
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 600 TLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
             + SYN  S+            S         I  +                   L  L
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNS------INVVRGPVNVE------------LTIL 237

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
            L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   + 
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 719 RQLVDLNTLAIFIVAYNNLS 738
                + TL +  +++N+L 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 8e-27
 Identities = 94/603 (15%), Positives = 199/603 (33%), Gaps = 74/603 (12%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 165
           ++ + K ++   ST+     ++    L     ++ L +++  +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 225
            + FN +   +      ++  +  L L  N     +      N  KL      NN +   
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-R 161

Query: 226 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 285
           I E  +      L++L LSSN                           +      L+ + 
Sbjct: 162 I-EDDTFQATTSLQNLQLSSN--------------------------RLTHVDLSLIPS- 193

Query: 286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 345
             L    +  + L+      +     +  LD S+N+    +    G +   L    +  N
Sbjct: 194 --LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHN 242

Query: 346 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 405
            L  +  +   N   L  +DLS N+L  +I  H  +    LE L +SNN L   +     
Sbjct: 243 NL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465
            +  L+ L L  NH +  + ++  +   L+ LYL++N++   +   L     L+++ +  
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354

Query: 466 NHLEG-PIPVEFCRLDSLQILDISDNNISG----------SLPSCFYPLSIKQVHLSKNM 514
           N  +   +   F  +    + D   +                   +    ++ + L+  +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 515 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS-HLNLAHNNLEGEVPIQLC 573
              Q  +G      ++ ++    +Y+       + G  QL   +N     ++     Q+ 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK--- 630
           +   LQ L    +          D         N        + +F +   Q    +   
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534

Query: 631 KILEIFEFTTKNIAYAYQ-----GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 685
           K  E  +   +NIA   Q      +   L     L   K+      +  N    +  +  
Sbjct: 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHH 594

Query: 686 HNN 688
           H++
Sbjct: 595 HHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 67/324 (20%), Positives = 118/324 (36%), Gaps = 39/324 (12%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            SF  +  L+L         T          ++ L +  +++   L   +    P L  L
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +   +++  L    F +   L  L M    +           ++  SL+ L LS     
Sbjct: 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSS---- 180

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    +D  L  +  L    +  N L       LA   ++  LD S N +   +     
Sbjct: 181 -NRLTHVDLSL--IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVN 231

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
           V LT    L+L +N+         L N+  L   D   NE+  E    H      +L+ L
Sbjct: 232 VELT---ILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERL 283

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVNDSLA 299
            +S+N   ++    +      LK  +LSH  +  +            +LE LYL ++S+ 
Sbjct: 284 YISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYLDHNSIV 337

Query: 300 GPFRLPIHSHKRLRFLDVSNNNFQ 323
               L + +H  L+ L +S+N++ 
Sbjct: 338 ---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 57/445 (12%), Positives = 129/445 (28%), Gaps = 40/445 (8%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
              PSL   ++  N  +        L     +E L    S   I++++    +   L  L
Sbjct: 189 SLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--SHNSINVVRG--PVNVELTIL 237

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +     N +       ++  L  +D+ +  +      +      M  L+ L +S     
Sbjct: 238 KLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN---- 287

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    L+    P+  L+ L + +N L   +         L  L +  N +     +  L
Sbjct: 288 -NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKL 341

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
               +++ L LS+N +          N ++  + D           + H          L
Sbjct: 342 STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD----------ADQHCKIDYQLEHGL 391

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
               +    +           + E                   +            L G 
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 302 FRLPIHSHK-RLRFLDVSNNNFQGHIPVEI--GDILPSLVYFNISMNALDGSIPSSFGNV 358
            +L    ++ R     ++N   Q    ++    +I  +L  + +  + L  S  +     
Sbjct: 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVF 511

Query: 359 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
             L+       + T              E L   N +L+  + ++      LR       
Sbjct: 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571

Query: 419 HFVGEIPQSLSKCSSLKGLYLNNNN 443
             V ++    ++    + +  ++++
Sbjct: 572 QKVKQLEAKKNRNPDTRRVSHHHHH 596

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 5e-31
 Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 33/474 (6%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
                L I  N +       + + + LRIL +S N++   +  S       +E L LS+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
                +S  P      LK  D   N  +      E  +++   QLK L LS+ + +  + 
Sbjct: 80  KLVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSV 132

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWL---------LENNTKLEFLYLVNDSLAGPFRL 304
               +         L       E P  L         +   T  EF ++++ S+     L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 364
            + + K +   +  +        ++    L +L   NI                  + + 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 365 DLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
            +SN KL G       D+       L    + ++              N+       +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCR 478
                   SK S    L  +NN L+  +    G+L  L+ +++  N L+    I     +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 479 LDSLQILDISDNNISGSLP--SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT-LDL 535
           + SLQ LDIS N++S       C +  S+  +++S N     L +  F      +  LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDL 428

Query: 536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
             N +  SIP  +  L  L  LN+A N L+        RL  LQ + L  N   
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (298), Expect = 3e-28
 Identities = 81/470 (17%), Positives = 164/470 (34%), Gaps = 43/470 (9%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 165
           S+  L+ L +S + +      +          L+ L + +N L   +      T +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 225
           D+SFN            +++ ++ L LS  H     S+ P+ + +  K+         GE
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET-YGE 153

Query: 226 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH-QHELKEAELSHIKMIGEFPNWLLEN 284
             +   L       + SL   +  +  F   L      +   ELS+IK + E        
Sbjct: 154 KEDPEGLQ---DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 285 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 344
           +   +       S      +    +  +R L +  +               ++ YF+IS 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--------------TVWYFSISN 256

Query: 345 NALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 399
             L G +     +        L    + ++        ++     N+   + + +  +  
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 400 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG---NLK 456
                  +     L    N     + ++    + L+ L L  N L  ++ +       +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 457 GLQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 515
            LQ + + +N +        C    SL  L++S N ++ ++  C  P  IK + L  N +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433

Query: 516 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNL 564
              + +       +L  L+++ N L  S+PD   D L+ L  + L  N  
Sbjct: 434 K-SIPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (282), Expect = 3e-26
 Identities = 96/461 (20%), Positives = 176/461 (38%), Gaps = 35/461 (7%)

Query: 159 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFD 216
           +    IL++S N ++  + +S ++ L+ +  L +S+N  +    L+  +F    +L+  D
Sbjct: 20  SQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLD 75

Query: 217 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS--HIKMI 274
             +N++        S  P   LK L LS N  D++   K   +  +LK   LS  H++  
Sbjct: 76  LSHNKL-----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 275 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 334
              P   L  +  L  L         P  L   + + L  +  +N  F   I       +
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF-ILDVSVKTV 189

Query: 335 PSLVYFNISMNALDG------SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC--CVNL 386
            +L   NI     D       SI +       L  L L+N + T      +        +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 387 EFLSLSNNSLKGHIFSRIF-----SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 441
            + S+SN  L+G +  R F     SL+ L    +  + F           S++       
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 442 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 501
           +            +    H+    N L   +      L  L+ L +  N +   L     
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAE 368

Query: 502 PL----SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 557
                 S++Q+ +S+N +    K+G      SL++L++S N L  +I   +    ++  L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVL 426

Query: 558 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
           +L  N ++  +P Q+ +L  LQ L+++ N L  +    FD 
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (279), Expect = 7e-26
 Identities = 90/498 (18%), Positives = 165/498 (33%), Gaps = 66/498 (13%)

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 297
              L++S NY   +     L     L+   +SH + I      + + N +LE+L L ++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSK-LRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 298 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 357
           L     +  H    L+ LD+S N F      +    +  L +  +S   L+ S      +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 358 VIFLQ-FLDLSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415
           +   +  L L       E P+ L      +L  +  +N      +   + ++ NL    +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 416 EGNHFVGEIPQSLSKCSSL------KGLYLNNNNLSGKIPRWLGNLKG--------LQHI 461
           +      +    LS  + L        L LNN   +      +  L          + ++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 462 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLHGQ 518
            +               L +L I  +  +         +   S   IK   +S       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RM 314

Query: 519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLN 576
           +        S  + LD S N L  ++ +    L++L  L L  N L+   ++     ++ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 577 QLQLLDLSDNNL-HGLIPSCFDN-TTLHESY-NNNSSPDKPFKTSFSISGPQGSVEKKIL 633
            LQ LD+S N++ +           +L     ++N   D  F                  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------------------ 416

Query: 634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693
                            +   +  LDL  NK+   IP Q+  L  +Q LN++ N L    
Sbjct: 417 ---------------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 694 PLTFSNLRHIESLDLSYN 711
              F  L  ++ + L  N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (267), Expect = 3e-24
 Identities = 76/400 (19%), Positives = 145/400 (36%), Gaps = 30/400 (7%)

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
            +D S N L   +P  L+        L++S N +     S I SL  LR L++  N    
Sbjct: 4   LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 481
                      L+ L L++N L  KI         L+H+ +  N  +  PI  EF  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           L+ L +S  ++  S       L+I +V L     +G+ ++          T  L   +  
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPT 174

Query: 542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL----------------LDLSD 585
                +I  +S  +  NL  +N++  +    C      L                ++ + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N+   ++   +  T  + S +N     +     F  SG   S++   +            
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVFGFPQ 292

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 705
           +Y   + S +   + + +            ++    L+ S+N LT T+     +L  +E+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 706 LDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
           L L  N+L    KI      + +L    ++ N++S    +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 2e-23
 Identities = 76/438 (17%), Positives = 153/438 (34%), Gaps = 50/438 (11%)

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 365
           I S  +LR L +S+N  Q ++ + +      L Y ++S N L   I       + L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 366 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR-WLLLEGNHF 420
           LS N        +   ++      L+FL LS   L+      I  L   +  L+L   + 
Sbjct: 97  LSFNAFDALPICKEFGNM----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 421 VGEIPQSLSKC--SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH----------- 467
             E P+ L      SL  ++  N      +   +  +  L+   +               
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK----EGT 523
           L            +L  ++ + N+    +    +  ++    +S   L GQL     + +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
             +  +L    +  +          +  S ++  N   +       +   +++    LD 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 584 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 639
           S+N L   +     +     TL    N      K  + +  +           L+  + +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---------LQQLDIS 382

Query: 640 TKNIAYAYQGRV---LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT 696
             +++Y  +         L  L++S N L   I   +    RI+ L+L  N +  +IP  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 697 FSNLRHIESLDLSYNKLS 714
              L  ++ L+++ N+L 
Sbjct: 440 VVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 1e-22
 Identities = 80/437 (18%), Positives = 156/437 (35%), Gaps = 40/437 (9%)

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 373
            +D S N    H+P    D+       NIS N +     S   ++  L+ L +S+N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF-VGEIPQSLSKCS 432
            +   +      LE+L LS+N L            NL+ L L  N F    I +     S
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF---CRLDSLQILDISD 489
            LK L L+  +L       + +L   + +++           E       +SL I+  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV----TLDLSYNYLNGSIP 545
                 L      ++  ++   K +L            + L       +L+ N +  +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 605
            +I  L  + H  + + ++     ++L      +  D S  +L  L      +       
Sbjct: 236 SFIRILQLVWHTTVWYFSISN---VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 606 NNNSSPDKPFKT-SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664
           +            +F++SG       +++ +   +            +S    LD S N 
Sbjct: 293 SYIYEIFSNMNIKNFTVSG------TRMVHMLCPSK-----------ISPFLHLDFSNNL 335

Query: 665 LVGHIPPQIGNLTRIQTLNLSHNNLT--GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 722
           L   +    G+LT ++TL L  N L     I    + ++ ++ LD+S N +S    +   
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 723 D-LNTLAIFIVAYNNLS 738
               +L    ++ N L+
Sbjct: 396 SWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (252), Expect = 2e-22
 Identities = 84/475 (17%), Positives = 149/475 (31%), Gaps = 50/475 (10%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           S   L  L +  N       +         LEYL L  + L             +LK+L 
Sbjct: 43  SLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHNKLVKISCHP----TVNLKHLD 96

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           +S    + +   + F +   L+ L +        T   +     +  L    +      T
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLS------TTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 123 NSSRILDQGLCPLA--HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ---LTGSIS 177
              +   +GL       L  ++  N +    L   +    +L + ++             
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 178 SSPLVHLTSIEELRLSNNHFRIP----VSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 233
           S      T+ +   L+ N+        + +  L  H+ +  F   N ++ G+++      
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 234 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 293
               LK+LS+     D   FP                        +++ E  + +     
Sbjct: 271 SGTSLKALSIHQVVSDVFGFP-----------------------QSYIYEIFSNMNIKNF 307

Query: 294 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD--GSI 351
                     L          LD SNN        E    L  L    + MN L     I
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 352 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 411
                 +  LQ LD+S N ++ +          +L  L++S+N L   IF  +     ++
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 412 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 466
            L L  N     IP+ + K  +L+ L + +N L          L  LQ I +  N
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
            F ++N  +   +     +         +   +L   ++ L    +         L+ L 
Sbjct: 298 IFSNMNIKNFTVSG--TRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLI 354

Query: 63  MSGCEVNGVLSGQG-FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
           +   ++  +          KSL+ LD+      ++    +       SL  L++S + L 
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
               R L         ++ L + +N ++ S+P  +    +L+ L+V+ NQL  S+     
Sbjct: 413 DTIFRCLPP------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464

Query: 182 VHLTSIEELRLSNNHF 197
             LTS++++ L  N +
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (314), Expect = 2e-30
 Identities = 87/434 (20%), Positives = 142/434 (32%), Gaps = 71/434 (16%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLR 408
            +P+       + ++DLS N +  E+ +       +L+FL +   +    I +  F  L 
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPR-WLGNLKGLQHIVMPKN 466
           +L  L L+ N F+     + +  ++L+ L L   NL    +   +   L  L+ +V+  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 467 HLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLH------ 516
           +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 517 -GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575
            G  K G  F  +S+ TLDLS N    S+          + +     +            
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 634
                 D  +    GL  S     T   S +   +     F                   
Sbjct: 257 GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLKSVFSH----------------- 297

Query: 635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTI 693
                             + L  L L+ N++   I       LT +  LNLS N L    
Sbjct: 298 -----------------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 694 PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFN 752
              F NL  +E LDLSYN +   +  Q    L  L    +  N L   +P+    F    
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLT 395

Query: 753 KSSY---DGNPFLC 763
                    NP+ C
Sbjct: 396 SLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (268), Expect = 1e-24
 Identities = 81/434 (18%), Positives = 147/434 (33%), Gaps = 61/434 (14%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
           AH+  + +  N +        +    L+ L V        I ++    L+S+  L+L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 196 HFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
            F     LE   FN  + L++       ++G +   +   P   L+ L L  N       
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------- 139

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 313
                           +IK I   P     N  +   L L  +         + S     
Sbjct: 140 ----------------NIKKIQ--PASFFLNMRRFHVLDLTFN--------KVKSICEED 173

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 373
            L+    +F           L S+   +++   L      +      +  LDLS N    
Sbjct: 174 LLNFQGKHFTLL-------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
            +           +  SL  +    + ++   S  +  +   +   F G       + S 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILS----NSYNMGSSFGHTNFKDPDNFTFKG------LEASG 276

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
           +K   L+ + +   +     +   L+ + + +N +       F  L  L  L++S N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 494 GSLPSC-FYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DG 550
            S+ S  F  L  ++ + LS N +   L + +F    +L  L L  N L  S+PD I D 
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 551 LSQLSHLNLAHNNL 564
           L+ L  + L  N  
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 81/471 (17%), Positives = 147/471 (31%), Gaps = 104/471 (22%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 64
             +N + L  N+    L  T       +L++L ++  +  + +     + F  L +    
Sbjct: 30  AHVNYVDLSLNSIA-ELNET-SFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSS---- 80

Query: 65  GCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNS 124
                                                        L  L L  +      
Sbjct: 81  ---------------------------------------------LIILKLDYNQFLQLE 95

Query: 125 SRILDQGLCPLAHLQELYIDNNDLRGSL--PWCLANTTSLRILDVSFNQLTGSISSSPLV 182
           +   +     LA+L+ L +   +L G++         TSL +L +  N +     +S  +
Sbjct: 96  TGAFNG----LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 183 HLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
           ++     L L+ N  + I       F      +    +  +                   
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------------------Q 193

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVNDSLA 299
            ++  +               +   +LS    K       +     TK++ L L N    
Sbjct: 194 DMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---- 248

Query: 300 GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNV 358
                   S     F D  N  F+G            +   ++S + +  ++    F + 
Sbjct: 249 --SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFSHF 298

Query: 359 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 417
             L+ L L+ N++  +I D+      +L  L+LS N L   I SR+F +L  L  L L  
Sbjct: 299 TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSY 356

Query: 418 NHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKN 466
           NH    +  QS     +LK L L+ N L   +P      L  LQ I +  N
Sbjct: 357 NHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 31/210 (14%)

Query: 6   SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 65
           S+ TL L  N F       +        +  +L  S+ +        + F    N +  G
Sbjct: 213 SITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 66  CEVNGV------------LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPS 109
            E +GV            L    F HF  LE L        L  + +  I +     +  
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNEINKIDDNAFWGLTH 324

Query: 110 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL-ANTTSLRILDVS 168
           L  L+LS + LG+  SR+ +     L  L+ L +  N +R +L         +L+ L + 
Sbjct: 325 LLKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 169 FNQLTGSISSSPLVHLTSIEELRLSNNHFR 198
            NQL  S+       LTS++++ L  N + 
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 55/310 (17%), Positives = 104/310 (33%), Gaps = 36/310 (11%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH------ISLLQSIGSIFPSL 58
            SL  L L  NN    +       N      L L  + +       +   Q        L
Sbjct: 129 TSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 59  KNLSMSGCEVNGVLSGQG--FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 116
            ++++       +   +        S+  LD+       + +       +   ++ L LS
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 117 -----GSTLGTNSSRILDQGLC---PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 168
                GS+ G  + +  D         + ++   +  + +   L    ++ T L  L ++
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 169 FNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEI 226
            N++   I  +    LT + +L LS N      S++  +F +  KL++ D   N I   +
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLG---SIDSRMFENLDKLEVLDLSYNHI-RAL 362

Query: 227 NES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH------IKMIGEFP 278
            +     L     LK L+L +N   SV           L++  L           I    
Sbjct: 363 GDQSFLGLP---NLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418

Query: 279 NWLLENNTKL 288
            WL +N+ K 
Sbjct: 419 RWLNKNSQKE 428

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  121 bits (306), Expect = 2e-30
 Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 84/368 (22%)

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 418
            L+ +  S+  L  ++P  L     +   L L NN +   I    F  L+NL  L+L  N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
                 P + +    L+ LYL+ N L  ++P  +                          
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------- 119

Query: 479 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLS 536
             +LQ L + +N I+    S F  L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
              +  +IP        L+ L+L  N +       L  LN L  L LS N++  +     
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 597 DN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 652
            N      LH + N                                              
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGL----------------------------------ADH 262

Query: 653 SLLAGLDLSCNKL------VGHIPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 704
             +  + L  N +          P           ++L  N +      P TF  +    
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 705 SLDLSYNK 712
           ++ L   K
Sbjct: 323 AVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (297), Expect = 4e-29
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 22/286 (7%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L NNK+
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 431
           + +I        V LE L LS N LK  +  ++   + L+ L +  N          +  
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144

Query: 432 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
           + +  + L  N L            +K L +I +   ++   IP       SL  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 490 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
           N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N L   +P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 549 DGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNL 588
                +  + L +NN+          P    +      + L  N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
            L+++  SD  +   +P    P     + L  N +  ++K+G F N  +L TL L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 598
           +   P     L +L  L L+ N L+ E+P ++     LQ L + +N +  +  S F+   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 599 --TTLHESYNNNSS---PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653
               +    N   S    +  F+                L        NI       +  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKK------------LSYIRIADTNITTI-PQGLPP 192

Query: 654 LLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 712
            L  L L  NK+   +       L  +  L LS N+++     + +N  H+  L L+ NK
Sbjct: 193 SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 713 LSGKIPRQLVDLNTLAIFIVAYNNLS 738
           L  K+P  L D   + +  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 64/317 (20%), Positives = 111/317 (35%), Gaps = 49/317 (15%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
                L + NN +         N  +L  L +  N+++  IS      L  +E L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 196 HFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
             + +P   E +     L+      NEI  ++ +S       Q+  + L +N        
Sbjct: 111 QLKELP---EKMP--KTLQELRVHENEIT-KVRKS-VFNGLNQMIVVELGTN-------- 155

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 314
                   LK + +          N   +   KL ++ + + ++     +P      L  
Sbjct: 156 -------PLKSSGI---------ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTE 196

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           L +  N     +       L +L    +S N++      S  N   L+ L L+NNKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-------SLRNLRWLLLEGNHF-VGEIPQ 426
           +P  LA     ++ + L NN++   I S  F          +   + L  N     EI  
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 427 SLSKC-SSLKGLYLNNN 442
           S  +C      + L N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 8e-16
 Identities = 60/328 (18%), Positives = 110/328 (33%), Gaps = 58/328 (17%)

Query: 54  IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 113
           + P    L +   ++   +    F + K+L  L +   +I   +         +  L+ L
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERL 105

Query: 114 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 173
            LS      N  + L + +     LQEL +  N++             + ++++  N L 
Sbjct: 106 YLSK-----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 174 -GSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 231
              I +     +  +  +R+++ +   IP  L        L       N+I  ++ ++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKIT-KV-DAAS 211

Query: 232 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 291
           L     L  L LS N                           I    N  L N   L  L
Sbjct: 212 LKGLNNLAKLGLSFN--------------------------SISAVDNGSLANTPHLREL 245

Query: 292 YLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQ-----GHIPVEIGDILPSLVYFNISM 344
           +L N+ L    ++P  +  HK ++ + + NNN          P        S    ++  
Sbjct: 246 HLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 345 NALDGSI--PSSFGNVIFLQFLDLSNNK 370
           N +      PS+F  V     + L N K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 32/253 (12%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
             +L+TL L +N  +    +         LE L L  +   +  L     +  +L+ L +
Sbjct: 75  LKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKN--QLKELPE--KMPKTLQELRV 128

Query: 64  SGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL----NTSFLQIIGESMPSLKYLSLSGST 119
              E+  V     F     +  +++    +      N +F     + M  L Y+ ++   
Sbjct: 129 HENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAF-----QGMKKLSYIRIAD-- 180

Query: 120 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 179
               +   + QGL     L EL++D N +       L    +L  L +SFN ++ ++ + 
Sbjct: 181 ---TNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNG 234

Query: 180 PLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI----NGEINESHSLTP 234
            L +   + EL L+NN   ++P     L +H  +++    NN I    + +       T 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG---LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 235 KFQLKSLSLSSNY 247
           K     +SL SN 
Sbjct: 292 KASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 34/253 (13%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHN--FTNLEYLTLDD---SSLHISLLQSIGSIFPSLK 59
             L  L+L  N          EL       L+ L + +   + +  S+   +      + 
Sbjct: 100 VKLERLYLSKNQLK-------ELPEKMPKTLQELRVHENEITKVRKSVFNGL----NQMI 148

Query: 60  NLSMSG-CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 118
            + +      +  +    F   K L ++ +    I        I     PSL  L L G+
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLTELHLDGN 202

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 178
            +    +++    L  L +L +L +  N +       LANT  LR L ++ N+L   +  
Sbjct: 203 KI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 179 SPLVHLTSIEELRLSNNHFR-IPVS----LEPLFNHSKLKIFDAKNNEINGEINESHSLT 233
             L     I+ + L NN+   I  +           +        +N +     +  +  
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 234 PKFQLKSLSLSSN 246
             +   ++ L + 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 63/222 (28%)

Query: 525 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
           F C   L  +  S   L   +P  +      + L+L +N +          L  L  L L
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 643
            +N +  + P  F                                               
Sbjct: 84  INNKISKISPGAFAP--------------------------------------------- 98

Query: 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
                   L  L  L LS N+L   +P        +Q L +  N +T      F+ L  +
Sbjct: 99  --------LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 704 ESLDLSYNKL-SGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 743
             ++L  N L S  I       +  L+   +A  N++  IP+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (297), Expect = 2e-29
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 11/242 (4%)

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH- 419
             +  ++  LT  +P  +     +   L L +N L+  +   +F  L  L  L L  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 420 -FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 477
            F G   QS    +SLK L L+ N +   +      L+ L+H+    ++L+       F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 478 RLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
            L +L  LDIS  +   +    F  L S++ + ++ N          F    +L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
              L    P   + LS L  LN++HNN           LN LQ+LD S N++        
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 597 DN 598
            +
Sbjct: 244 QH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (280), Expect = 4e-27
 Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 35/282 (12%)

Query: 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
             +  ++      +P     I  S     +  N L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 373 -GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-SK 430
                        +L++L LS N +   + S    L  L  L  + ++       S+   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 431 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFCRLDSLQILDISD 489
             +L  L +++ +           L  L+ + M  N   E  +P  F  L +L  LD+S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 549
             +                         QL    F + SSL  L++S+N           
Sbjct: 185 CQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 550 GLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLH 589
            L+ L  L+ + N++      Q  +   + L  L+L+ N+  
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 59/291 (20%), Positives = 98/291 (33%), Gaps = 65/291 (22%)

Query: 481 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQ-LKEGTFFNCSSLVTLDLSYN 538
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFD 597
            +  ++     GL QL HL+  H+NL+      +   L  L  LD+S  +        F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
                                                                 LS L  
Sbjct: 148 G-----------------------------------------------------LSSLEV 154

Query: 658 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716
           L ++ N    +  P I   L  +  L+LS   L    P  F++L  ++ L++S+N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 717 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS----SYDGNPFLC 763
                  LN+L +   + N++     +       F  S    +   N F C
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQE--LQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 14/236 (5%)

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVN 295
              L L SN   S+          +L +  LS   +       +      T L++L L  
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSF 87

Query: 296 ---DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 352
               +++  F       ++L  LD  ++N +      +   L +L+Y +IS      +  
Sbjct: 88  NGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 353 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLR 411
             F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 412 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKN 466
            L +  N+F           +SL+ L  + N++     + L +    L  + + +N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 21/271 (7%)

Query: 30  FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDM 88
            ++   L L+ + L  SL   +      L  LS+S   ++      Q      SL++LD+
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 89  RFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNN 146
            F  +  ++++F       +  L++L    S L     ++ +  +   L +L  L I + 
Sbjct: 86  SFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHT 136

Query: 147 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL 206
             R +        +SL +L ++ N    +        L ++  L LS       +S    
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF 195

Query: 207 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 266
            + S L++ +  +N       ++        L+ L  S N+  +    +  +    L   
Sbjct: 196 NSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 267 ELSH-----IKMIGEFPNWLLENNTKLEFLY 292
            L+            F  W+ +    L  + 
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 58/215 (26%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSD 585
           SS   L+L  N L        D L+QL+ L+L+ N L   G           L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N +  +  S F                                                 
Sbjct: 88  NGVITM-SSNFLG----------------------------------------------- 99

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
                 L  L  LD   + L       +  +L  +  L++SH +        F+ L  +E
Sbjct: 100 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 705 SLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 738
            L ++ N            +L  L    ++   L 
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 610
           + +      L   VP  +   +    L+L  N L  L    FD     T L  S N  S 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 611 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 670
                                       +             + L  LDLS N ++  + 
Sbjct: 67  ----------------------KGCCSQSDFG---------TTSLKYLDLSFNGVI-TMS 94

Query: 671 PQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 729
                L +++ L+  H+NL        F +LR++  LD+S+             L++L +
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 730 FIVAYNNLSGKIPE 743
             +A N+       
Sbjct: 155 LKMAGNSFQENFLP 168

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 1e-27
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 27/301 (8%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L NNK+
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 431
           + +I +        L+ L +S N L   I   +    +L  L +  N          S  
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 432 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
            ++  + +  N L      P     LK L ++ + +  L G IP +    ++L  L +  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDH 202

Query: 490 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
           N I             + ++ L  N +   ++ G+     +L  L L  N L+  +P  +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 549 DGLSQLSHLNLAHNNLEGEVP-------IQLCRLNQLQLLDLSDNNL--HGLIPSCFDNT 599
             L  L  + L  NN+  +V            +      + L +N +    + P+ F   
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 600 T 600
           T
Sbjct: 320 T 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (269), Expect = 2e-25
 Identities = 69/368 (18%), Positives = 112/368 (30%), Gaps = 85/368 (23%)

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 418
            L+ +  S+  L   +P  ++    +   L L NN +   +    F  L++L  L+L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
                  ++ S    L+ LY++ N+L  +IP  L                          
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-------------------------- 121

Query: 479 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
             SL  L I DN I       F  L ++  + +  N L     E   F+   L  L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597
             L   IP   D    L+ L+L HN ++      L R ++L  L L  N +  +      
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 598 N----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653
                  LH   N  S                                          L 
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPD----------------------------------LK 264

Query: 654 LLAGLDLSCNKLVGHIPPQI-------GNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 704
           LL  + L  N +   +                   ++L +N +      P TF  +    
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 705 SLDLSYNK 712
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 55/291 (18%), Positives = 103/291 (35%), Gaps = 47/291 (16%)

Query: 429 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
             C   L+ +  ++  L   +P+ +        + +  N +      +F  L  L  L +
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 488 SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 546
            +N IS      F PL  ++++++SKN L  ++        SSLV L +  N +      
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKG 141

Query: 547 WIDGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHES 604
              GL  ++ + +  N L             +L  L +S+  L G+     +    LH  
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201

Query: 605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664
           +N                        KI  I                 S L  L L  N+
Sbjct: 202 HN------------------------KIQAIELEDLLR---------YSKLYRLGLGHNQ 228

Query: 665 LVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           +   I       L  ++ L+L +N L+  +P    +L+ ++ + L  N ++
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
           I E      +    L  L LVN+ ++          ++L+ L +S N+    IP    ++
Sbjct: 66  ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNL 121

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
             SLV   I  N +       F  +  +  +++  N L     +  A   + L +L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWL 452
             L   I   +     L  L L+ N     I    L + S L  L L +N +       L
Sbjct: 182 AKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 453 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512
             L  L+ + +  N L   +P     L  LQ++ +  NNI+    + F P+         
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--------- 287

Query: 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHN 562
                    G     +    + L  N +      P     ++    +   + 
Sbjct: 288 ---------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 67/395 (16%), Positives = 114/395 (28%), Gaps = 87/395 (22%)

Query: 114 SLSGSTLGTNSSRILDQGL---CPLA---HLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
           S + +T G      L       CP     HL+ +   +  L+ ++P  +  +    +LD+
Sbjct: 5   SGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDL 61

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP--LFNHSKLKIFDAKNNEINGE 225
             N ++  +       L  +  L L NN       +         KL+      N     
Sbjct: 62  QNNDIS-ELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKN----H 113

Query: 226 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 285
           + E     P   L  L +  N                        I+ +   P  +    
Sbjct: 114 LVEIPPNLPS-SLVELRIHDN-----------------------RIRKV---PKGVFSGL 146

Query: 286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 345
             +  + +                  L         F G            L Y  IS  
Sbjct: 147 RNMNCIEM--------------GGNPLENSGFEPGAFDG----------LKLNYLRISEA 182

Query: 346 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 405
            L G           L  L L +NK+   I     +    L  L L +N ++  I +   
Sbjct: 183 KLTGIPKDLPET---LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSL 237

Query: 406 S-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-------RWLGNLKG 457
           S L  LR L L+ N     +P  L     L+ +YL+ NN++ K+         +      
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 458 LQHIVMPKNHLEGPI--PVEFCRLDSLQILDISDN 490
              I +  N +      P  F  +     +   + 
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 53/263 (20%), Positives = 96/263 (36%), Gaps = 24/263 (9%)

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
            L+++  SD  +  ++P          + L  N +  +L++  F     L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 598
           +         L +L  L ++ N+L  E+P  L   + L  L + DN +  +    F    
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 599 --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656
               +    N           +       G+ +   L     +   +       +   L 
Sbjct: 148 NMNCIEMGGNPL--------ENSGF--EPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN 196

Query: 657 GLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
            L L  NK+   I  +     +++  L L HN +      + S L  +  L L  NKLS 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 716 KIPRQLVDLNTLAIFIVAYNNLS 738
           ++P  L DL  L +  +  NN++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 25/248 (10%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 64
             L  L L +N  +      +       L+ L +  +  H+  +    ++  SL  L + 
Sbjct: 78  QHLYALVLVNNKISK--IHEKAFSPLRKLQKLYISKN--HLVEIPP--NLPSSLVELRIH 131

Query: 65  GCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNS 124
              +  V  G  F   +++  ++M    +    S  +        L YL +S        
Sbjct: 132 DNRIRKVPKGV-FSGLRNMNCIEMGGNPL--ENSGFEPGAFDGLKLNYLRISE-----AK 183

Query: 125 SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL 184
              + + L     L EL++D+N ++      L   + L  L +  NQ+   I +  L  L
Sbjct: 184 LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240

Query: 185 TSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI----NGEINESHSLTPKFQLK 239
            ++ EL L NN   R+P     L +   L++     N I      +         +    
Sbjct: 241 PTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 240 SLSLSSNY 247
            +SL +N 
Sbjct: 298 GISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 55/277 (19%), Positives = 96/277 (34%), Gaps = 35/277 (12%)

Query: 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRIL 165
           +  L  L L  + +    S+I ++   PL  LQ+LYI  N L   +P    N  +SL  L
Sbjct: 77  LQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVEL 128

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 225
            +  N++   +       L ++  + +  N           F+  KL        ++   
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--- 184

Query: 226 INESHSLTPKF--QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 283
                 +       L  L L  N   ++   + L    +L    L H + I    N  L 
Sbjct: 185 ----TGIPKDLPETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGSLS 238

Query: 284 NNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGHIP------VEIGDILP 335
               L  L+L N+ L+   R+P  +   K L+ + +  NN    +       V  G    
Sbjct: 239 FLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRA 294

Query: 336 SLVYFNISMNALDGSI--PSSFGNVIFLQFLDLSNNK 370
                ++  N +      P++F  V     +   N K
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 23/201 (11%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               SL  L +  N                N+  + +  + L  S  +        L  L
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGSTL 120
            +S  ++ G+         ++L  L +   +I A+    L         L  L L  + +
Sbjct: 178 RISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLL----RYSKLYRLGLGHNQI 229

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS- 179
                 I +  L  L  L+EL++DNN L   +P  L +   L+++ +  N +T  +  + 
Sbjct: 230 ----RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

Query: 180 -----PLVHLTSIEELRLSNN 195
                  V       + L NN
Sbjct: 284 FCPVGFGVKRAYYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 37/249 (14%), Positives = 86/249 (34%), Gaps = 27/249 (10%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHN--FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
             L  L++  N+         E+     ++L  L + D+ +   + + + S   ++  + 
Sbjct: 102 RKLQKLYISKNHLV-------EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIE 153

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           M G  +       G      L +L +  A++        I  +   +L  L L  + +  
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLT------GIPKDLPETLNELHLDHNKI-- 205

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
               I  + L   + L  L + +N +R      L+   +LR L +  N+L+  + +  L 
Sbjct: 206 --QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LP 261

Query: 183 HLTSIEELRLSNNHFR-IPV----SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
            L  ++ + L  N+   + V     +      +        NN +     +  +      
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 238 LKSLSLSSN 246
             ++   + 
Sbjct: 322 RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 37/216 (17%), Positives = 63/216 (29%), Gaps = 61/216 (28%)

Query: 525 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
           F C   L  +  S   L  ++P  I      + L+L +N++          L  L  L L
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 643
            +N +  +    F                                               
Sbjct: 86  VNNKISKIHEKAFSP--------------------------------------------- 100

Query: 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
                   L  L  L +S N LV  IPP +   + +  L +  N +       FS LR++
Sbjct: 101 --------LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 704 ESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLS 738
             +++  N L +        D   L    ++   L+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 16/151 (10%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSL 58
               +LN LHL+ N   A     ++L  ++ L  L L       +    L  +    P+L
Sbjct: 190 DLPETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL----PTL 243

Query: 59  KNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSL 115
           + L +   +++ V +  G P  K L+ + +      ++ +N       G        +SL
Sbjct: 244 RELHLDNNKLSRVPA--GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 116 SGSTLGTNSSRILDQGLCPLAHLQELYIDNN 146
             + +      +       +     +   N 
Sbjct: 302 FNNPV--PYWEVQPATFRCVTDRLAIQFGNY 330

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 2e-27
 Identities = 75/379 (19%), Positives = 114/379 (30%), Gaps = 103/379 (27%)

Query: 336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 395
                N+  + L  ++P        +  L + +N LT  +P         L  L +S N 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 396 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455
           L   +      L  L        H            S L  L++  N L+  +P     L
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 515
           + L    +  N L   +P        L  L   +N ++ SLP                  
Sbjct: 144 QELS---VSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLP--------------- 180

Query: 516 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575
                       S L  L +S N L  S+P      S+L  L   +N L   +P      
Sbjct: 181 ------------SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPS-- 221

Query: 576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 634
             L+ L +S N L  L     +   L  S N  +S P                       
Sbjct: 222 -GLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---------------------- 258

Query: 635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 694
                           + S L  L +  N+L   +P  + +L+   T+NL  N L+    
Sbjct: 259 ----------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---E 298

Query: 695 LTFSNLRHIESLDLSYNKL 713
            T   LR I S       +
Sbjct: 299 RTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (287), Expect = 2e-26
 Identities = 74/352 (21%), Positives = 119/352 (33%), Gaps = 47/352 (13%)

Query: 263 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 322
                +     +   P+ L  +   +  L + +++L     LP      LR L+VS N  
Sbjct: 42  NAVLNVGE-SGLTTLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 382
              +PV     L  L  F+  +  L             L  L +  N+LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 442
              L+ LS+S+N L     S       L  L    N     +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 443 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 502
            L+  +P     L  L       N L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL--P 240

Query: 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 562
             +K++ +S N L   L        S L++L +  N L   +P+ +  LS  + +NL  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 614
            L       L  +                  S    T        +      
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (285), Expect = 3e-26
 Identities = 72/354 (20%), Positives = 112/354 (31%), Gaps = 98/354 (27%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
              L++  + LT  +PD L     ++  L + +N+L     S       LR L + GN  
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
              +P        L        +L    P     L  L    +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVL---PP 141

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
            LQ L +SDN ++ SLP+                             S L  L    N L
Sbjct: 142 GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
             S+P      S L  L+++ N L   +P     L +L   +    +L  L         
Sbjct: 174 T-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL---KE 225

Query: 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 660
           L  S N                        ++  +                 S L  L +
Sbjct: 226 LIVSGN------------------------RLTSLPVL-------------PSELKELMV 248

Query: 661 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           S N+L   +P     L     L++  N LT  +P +  +L    +++L  N LS
Sbjct: 249 SGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 5e-24
 Identities = 76/430 (17%), Positives = 129/430 (30%), Gaps = 105/430 (24%)

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
           ++    +     L+V  +     +P  +      +    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
            L++S N+LT  +P       + L   S     L             L  L + GN    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
            +P        L+ L +++N L+  +P     L  L       N L   +P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPML---PSGL 183

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           Q L +SDN ++ SLP+                             S L  L    N L  
Sbjct: 184 QELSVSDNQLA-SLPTLP---------------------------SELYKLWAYNNRLT- 214

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602
           S+P      S L  L ++ N L   +P      ++L+ L +S N L  L        +L 
Sbjct: 215 SLPALP---SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLS 267

Query: 603 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
              N  +  P+                      +                LS    ++L 
Sbjct: 268 VYRNQLTRLPE---------------------SLIH--------------LSSETTVNLE 292

Query: 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS-YNKLSGKIPRQ 720
            N L       +  +T           +        S  R   +L L+  + L      +
Sbjct: 293 GNPLSERTLQALREITS---APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 721 LVDLNTLAIF 730
               +   +F
Sbjct: 350 PAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 69/413 (16%), Positives = 115/413 (27%), Gaps = 89/413 (21%)

Query: 81  KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 140
                L++  + +   T+    +      +  L +       N+   L         L+ 
Sbjct: 40  NGNAVLNVGESGL---TTLPDCLP---AHITTLVIPD-----NNLTSLPALPP---ELRT 85

Query: 141 LYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-I 199
           L +  N L  SLP        L I       L            + + +L +  N    +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 200 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSLSLSSNYGDSVTFPKFLY 258
           PV          L+     +N++        SL     +L  L   +N            
Sbjct: 137 PVLP------PGLQELSVSDNQLA-------SLPALPSELCKLWAYNN------------ 171

Query: 259 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 318
                          +   P       + L+ L + ++ LA    LP      L  L   
Sbjct: 172 --------------QLTSLPMLP----SGLQELSVSDNQLA---SLP-TLPSELYKLWAY 209

Query: 319 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 378
           NN     +P         L    +S N L  S+P        L+ L +S N+LT  +P  
Sbjct: 210 NNRLT-SLPALPS----GLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPML 259

Query: 379 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 438
            +     L  LS+  N L   +   +  L +   + LEGN    E      +  +    Y
Sbjct: 260 PS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGY 313

Query: 439 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 491
                                H+    + L      E    D   +    DN 
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAA-DWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 66/263 (25%)

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           C  +   +L++ ++ ++ +LP C  P  I  + +  N L   L          L TL++S
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNLT-SLPA----LPPELRTLEVS 89

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
            N L  S+P    GL +LS  +    +L           + L  L +  N L  L     
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPP 141

Query: 597 DNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655
               L  S N  +S P  P +                                      L
Sbjct: 142 GLQELSVSDNQLASLPALPSE--------------------------------------L 163

Query: 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
             L    N+L   +P     L   Q L++S N L  ++P   S L     L    N+L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT- 214

Query: 716 KIPRQLVDLNTLAIFIVAYNNLS 738
            +P     L  L   IV+ N L+
Sbjct: 215 SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 73/451 (16%), Positives = 133/451 (29%), Gaps = 94/451 (20%)

Query: 6   SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 65
               L++  +  T   T    L    ++  L + D++L      S+ ++ P L+ L +SG
Sbjct: 41  GNAVLNVGESGLT---TLPDCL--PAHITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 66  CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 125
            ++  +      P    L         +                L  L + G+ L +   
Sbjct: 91  NQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLPV 138

Query: 126 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185
                       LQEL + +N L  SLP   +    L  L    NQLT S+        +
Sbjct: 139 LP--------PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML----PS 181

Query: 186 SIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 244
            ++EL +S+N    +P     L    KL  ++ +   +    +          LK L +S
Sbjct: 182 GLQELSVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPS---------GLKELIVS 229

Query: 245 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 304
            N                           +   P       ++L+ L +  + L     L
Sbjct: 230 GN--------------------------RLTSLPVLP----SELKELMVSGNRLT---SL 256

Query: 305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 364
           P+     L  L V  N     +P  +   L S    N+  N L      +      +   
Sbjct: 257 PMLPSG-LLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALRE---ITSA 310

Query: 365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 424
              +  +        +           + + L              RW +          
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD--RWHMFGQEDNADAF 368

Query: 425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455
              L + S  +  ++ +     +I  WL  L
Sbjct: 369 SLFLDRLSETEN-FIKDAGFKAQISSWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 9e-14
 Identities = 74/412 (17%), Positives = 121/412 (29%), Gaps = 93/412 (22%)

Query: 4   FPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
              + TL +  NN T        L      L  L +  + L      S+  + P L  LS
Sbjct: 60  PAHITTLVIPDNNLT-------SLPALPPELRTLEVSGNQLT-----SLPVLPPGLLELS 107

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           +    +  +      P    L  L        +  + L  +    P L+ LS+S      
Sbjct: 108 IFSNPLTHL---PALP--SGLCKLW-------IFGNQLTSLPVLPPGLQELSVSD----- 150

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
           N    L         L +L+  NN L  SLP      + L+ L VS NQL  S+ + P  
Sbjct: 151 NQLASLPALPS---ELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLP-- 200

Query: 183 HLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             + + +L   NN    +P         S LK      N +   +    S     +LK L
Sbjct: 201 --SELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLT-SLPVLPS-----ELKEL 246

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
            +S N                           +   P       + L  L +  + L   
Sbjct: 247 MVSGNR--------------------------LTSLPMLP----SGLLSLSVYRNQLT-- 274

Query: 302 FRLP--IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI 359
            RLP  +        +++  N       ++    + S   ++  +   D +  S+     
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 411
            L     + + L        A       F    N         R+    N  
Sbjct: 333 ALH--LAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFI 382

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 46/247 (18%), Positives = 82/247 (33%), Gaps = 53/247 (21%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
                 L+       +  A           + L  L +  + L      S+  + P L+ 
Sbjct: 100 PPGLLELSIFSNPLTHLPALP---------SGLCKLWIFGNQLT-----SLPVLPPGLQE 145

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           LS+S  ++  + +         L   + +          L  +      L+ LS+S    
Sbjct: 146 LSVSDNQLASLPA--LPSELCKLWAYNNQ----------LTSLPMLPSGLQELSVSD--- 190

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
             N    L         L +L+  NN L  SLP      + L+ L VS N+LT S+    
Sbjct: 191 --NQLASLPTLPS---ELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPVL- 239

Query: 181 LVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239
               + ++EL +S N    +P+        S L       N++         L+      
Sbjct: 240 ---PSELKELMVSGNRLTSLPMLP------SGLLSLSVYRNQLTRLPESLIHLS---SET 287

Query: 240 SLSLSSN 246
           +++L  N
Sbjct: 288 TVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
            +  A L++  + L   +P  +     I TL +  NNLT ++P     LR   +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 745
           +L+  +P     L  L+IF     +L        
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 570 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNN-NSSPDKPFKTSFSISGPQGS 627
           ++ C  N   +L++ ++ L  L      + TTL    NN  S P                
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------------- 78

Query: 628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687
                                  +   L  L++S N+L   +P     L  +   +    
Sbjct: 79  -----------------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747
           +L        +    +  L +  N+L+  +P     L  L    V+ N L+  +P   ++
Sbjct: 115 HLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 1e-26
 Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 37/473 (7%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
              + L +  N +       ++  + LR+L +S N++  S+     +    +E L +S+N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
             +   ++      + L+  D   N+ +      E  +LT   +L  L LS+     +  
Sbjct: 111 RLQ---NI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDL 163

Query: 254 PKFLYHQHELKEAELSHIKM-IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 312
               +        +L    +  GE  +  + N T L  ++  N   +    + +++   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 313 RFLDVS-NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-----LQFLDL 366
           +  ++  N+     +   + ++       N+++  ++ +   S     F     +++L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 367 SNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
            N  +T     E   +      +L    + N        +       +   +L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
                    SS   L    N  +  + +    LK LQ +++ +N L+           ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 483 QILDISDNNISGSLPS------CFYPLSIKQVHLSKNMLHGQLKEGTFFNC--SSLVTLD 534
             L+  D +++ SL S      C +  SI  ++LS NML      G+ F C    +  LD
Sbjct: 403 SSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-----GSVFRCLPPKVKVLD 456

Query: 535 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           L  N +  SIP  +  L  L  LN+A N L+        RL  LQ + L DN 
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (257), Expect = 5e-23
 Identities = 83/458 (18%), Positives = 167/458 (36%), Gaps = 31/458 (6%)

Query: 159 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNH-SKLKIFD 216
               + L +S N ++  +    +  L+ +  LRLS+N  R +      +F     L+  D
Sbjct: 51  PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFH---VFLFNQDLEYLD 106

Query: 217 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 276
             +N +     ++ S  P   L+ L LS N  D +   K   +  +L    LS  K    
Sbjct: 107 VSHNRL-----QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 277 FPNWLLENNTKLEFLYLVNDSL-AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 335
               +   +     L LV+  +  G        +  +  L    N+          + L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 336 SLVYFNISMNALDGSIPSSFGNVIF----LQFLDLSNNKLTGE--IPDHLAMCCVNLEFL 389
            L   NI +N  +     +F + +     L  + L + + T +  +          +E+L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 390 SLSNNSLKGHIFSRIF-----SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444
           ++ N ++   I    F     +L++L    ++   F+       S  + +    L+ ++ 
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 445 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL- 503
                    +      +   +N     +      L  LQ L +  N +  +         
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 504 ---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
              S++ + +S N L+    + T     S++ L+LS N L GS+   +    ++  L+L 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
           +N +   +P  +  L  LQ L+++ N L  +    FD 
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 2e-22
 Identities = 71/428 (16%), Positives = 153/428 (35%), Gaps = 34/428 (7%)

Query: 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 365
           I     LR L +S+N  +  +   +      L Y ++S N L  +I      +  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 366 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHF 420
           LS N        +   +L      L FL LS    +      +  L  +   L L   H 
Sbjct: 128 LSFNDFDVLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 421 VGEIPQSLS--KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP----IPV 474
            G   +SL     + L  ++  N+  S ++   +  L  LQ   +  N            
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 475 EFCRLDSLQILDISDNNISG----SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS-- 528
           E  R  +L  + +     +      L   F+P  ++ +++    +  ++    F      
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 529 --SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586
             SL+   +       S        ++++   L+ ++      +     +    L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTKNIAY 645
                +          ++           K  F ++    ++   + L++   +  + AY
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQR---NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 705
                    +  L+LS N L G +   +    +++ L+L +N +  +IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 706 LDLSYNKL 713
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 90/485 (18%), Positives = 164/485 (33%), Gaps = 72/485 (14%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
               L  L L  N   +            +LEYL +  +                L+N+S
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHV--FLFNQDLEYLDVSHN---------------RLQNIS 116

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSGST 119
                              SL HLD+    F  + +   F      ++  L +L LS + 
Sbjct: 117 --------------CCPMASLRHLDLSFNDFDVLPVCKEF-----GNLTKLTFLGLSAAK 157

Query: 120 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP------WCLANTTSLRIL----DVSF 169
                       L P+AHL    I  + +   +         + NTT L ++     +  
Sbjct: 158 FRQLD-------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 170 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE-INE 228
            Q+  S+++   + L++I+      N  R+   L  L     L     ++ E   +   +
Sbjct: 211 VQVNMSVNALGHLQLSNIKLND--ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 229 SHSLTPKFQLKSLSLSSN-YGDSVTFPKFLYHQHELKEAELSHIKM--IGEFPNWLLENN 285
                    ++ L++ +    + +   +F Y +  LK   + H+K          L    
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 345
            ++    L          +   S     FL+ + N F      +    L  L    +  N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRN 387

Query: 346 ALDGSIPSSFG---NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS 402
            L  +         N+  L+ LD+S N L     D       ++  L+LS+N L G +F 
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHI 461
            +     ++ L L  N     IP+ ++   +L+ L + +N L   +P      L  LQ+I
Sbjct: 447 CL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502

Query: 462 VMPKN 466
            +  N
Sbjct: 503 WLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 63/379 (16%), Positives = 113/379 (29%), Gaps = 26/379 (6%)

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFV 421
            +D SN  LT  +P  L       + LSLS NS+   +       L  LR L L  N   
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 422 GEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRL 479
             +   +      L+ L +++N L   I      +  L+H+ +  N  +  P+  EF  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 480 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
             L  L +S              L +  + L     H +  E       +   L L ++ 
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 599
            +         ++ L HL L++  L  E   +L           +  N+           
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 659
           ++                  +I          I E  +       + Y    L  L    
Sbjct: 266 SV----KLFQFFWPRPVEYLNIYN------LTITERIDREE----FTYSETALKSLMIEH 311

Query: 660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 719
           +     +            +    LS ++      +   +      L+ + N  +  + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 720 QLVDLNTLAIFIVAYNNLS 738
               L  L   I+  N L 
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 67/421 (15%), Positives = 144/421 (34%), Gaps = 67/421 (15%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
           D+ P     ++S N++          +  L+ L LS+N++   +  H+ +   +LE+L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 451
           S+N L+        ++                   S    +SL+ L L+ N+        
Sbjct: 108 SHNRLQ--------NI-------------------SCCPMASLRHLDLSFNDFD------ 134

Query: 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 511
                              P+  EF  L  L  L +S              L +  + L 
Sbjct: 135 -----------------VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 512 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 571
               H +  E       +   L L ++  +         ++ L HL L++  L  E   +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 572 LCRLNQ------------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 619
           L                 LQ ++ +      L    +     + +  N +  ++  +  F
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 620 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 679
           + S  + +++  ++E  +      +      V + +    LS +           + +  
Sbjct: 298 TYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNL 737
             LN + N  T ++    S L+ +++L L  N L    K+     ++++L    V+ N+L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 738 S 738
           +
Sbjct: 416 N 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 60/382 (15%), Positives = 119/382 (31%), Gaps = 75/382 (19%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF----- 55
             S    NT  L       +L + Q   +   L +L L +  L+    Q + +       
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 56  -PSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIA--LNTSFLQIIGESMPSL 110
            P+L N+++   E      +    F   + +E+L++    I   ++         ++ SL
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 170
               +       +   +        A +    +  +D       C  + +S   L+ + N
Sbjct: 308 MIEHVKNQVFLFSKEALYSV----FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 171 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 230
             T          L  ++ L L  N  +   +   +   +K                   
Sbjct: 364 VFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTK------------------- 400

Query: 231 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 290
                  + SL       +S+    +                      +        +  
Sbjct: 401 ------NMSSLETLDVSLNSLNSHAY----------------------DRTCAWAESILV 432

Query: 291 LYLVNDSL-AGPF-RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 348
           L L ++ L    F  LP      ++ LD+ NN     IP ++   L +L   N++ N L 
Sbjct: 433 LNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQL- 485

Query: 349 GSIP-SSFGNVIFLQFLDLSNN 369
            S+P   F  +  LQ++ L +N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (280), Expect = 3e-26
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 13/242 (5%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
              +      L  E+PD ++    N   L+L  N ++  I    F  LR+L  L L  NH
Sbjct: 45  FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 478
                  + +  ++L  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNR 158

Query: 479 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           + SL+ LD+ +      +    F  L +++ ++L+   L    +         L  LDLS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLS 215

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
            N+L+   P    GL  L  L +  + ++         L  L  ++L+ NNL  L    F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 597 DN 598
             
Sbjct: 276 TP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 3e-25
 Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
            I  +    N+  N +     +SF ++  L+ L LS N +   I         NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 392 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450
            +N L   I +  F  L  L+ L L  N        + ++  SL+ L L        I  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 451 -WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 509
                L  L+++ +   +L   IP     L  L  LD+S N++S                
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS---------------- 220

Query: 510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569
                    ++ G+F     L  L +  + +     +  D L  L  +NLAHNNL     
Sbjct: 221 --------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 570 IQLCRLNQLQLLDLSDNNLH 589
                L+ L+ + L  N  +
Sbjct: 273 DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 6e-22
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 47/287 (16%)

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 491
           +    +     NL  ++P  +      + + + +N ++      F  L  L+IL +S N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 492 ISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550
           I       F  L ++  + L  N L   +  G F   S L  L L  N +        + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 551 LSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYN 606
           +  L  L+L        +       L+ L+ L+L+  NL   IP+      L E   S N
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN 217

Query: 607 NNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
           + S+     F+                                   L  L  L +  +++
Sbjct: 218 HLSAIRPGSFQG----------------------------------LMHLQKLWMIQSQI 243

Query: 666 VGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
              I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 66/289 (22%)

Query: 481 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
           + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNN-LHGLIPSCFD 597
           L          LS+L  L L +N +E  +P     R+  L+ LDL +   L  +    F+
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657
                                                                 LS L  
Sbjct: 183 G-----------------------------------------------------LSNLRY 189

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           L+L+   L   IP  +  L ++  L+LS N+L+   P +F  L H++ L +  +++    
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 763
                +L +L    +A+NNL+  +P     F   +         NP+ C
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 19/194 (9%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNL 61
            +LNTL L  N  T            + L+ L L   +  I  + S    F   PSL+ L
Sbjct: 112 ANLNTLELFDNRLTTIPNGA--FVYLSKLKELWL--RNNPIESIPS--YAFNRIPSLRRL 165

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +   +    +S   F    +L +L++    +    +        +  L  L LSG+ L 
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIKLDELDLSGNHL- 219

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
              S I       L HLQ+L++  + ++        N  SL  ++++ N LT  +     
Sbjct: 220 ---SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 182 VHLTSIEELRLSNN 195
             L  +E + L +N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 28/249 (11%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 60
             +   L+L  N     +       +  +LE L L  +  HI  ++     F    +L  
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNS-FKHLRHLEILQLSRN--HIRTIEI--GAFNGLANLNT 116

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 118
           L +    +   +    F +   L+ L +R   I    + +F       +PSL+ L L   
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGEL 170

Query: 119 TLGTNS-SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 177
                  S I +     L++L+ L +   +LR  +P  L     L  LD+S N L+ +I 
Sbjct: 171 ----KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIR 223

Query: 178 SSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 237
                 L  +++L +  +  ++ +      N   L   +  +N +   +      TP   
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNL--TLLPHDLFTPLHH 280

Query: 238 LKSLSLSSN 246
           L+ + L  N
Sbjct: 281 LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 45/274 (16%)

Query: 53  SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 110
            I  + + L++   ++  +     F H + LE L +    I      +F       + +L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 169
             L L  + L    + I +     L+ L+EL++ NN +     +      SLR LD+   
Sbjct: 115 NTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 170 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 229
            +L+  IS      L+++  L L+  + R    +  L    KL   D   N +       
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRP 224

Query: 230 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 289
            S      L+ L +  +                        I++I        +N   L 
Sbjct: 225 GSFQGLMHLQKLWMIQS-----------------------QIQVI---ERNAFDNLQSLV 258

Query: 290 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 323
            + L +++L             L  + + +N + 
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 40/213 (18%), Positives = 63/213 (29%), Gaps = 58/213 (27%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           ++   L+L  N +     +    L  L  L L+ N++          L  L  L+L DN 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
           L  +    F                                                   
Sbjct: 124 LTTIPNGAFVY------------------------------------------------- 134

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIES 705
               LS L  L L  N +   IP      +  ++ L+L        I    F  L ++  
Sbjct: 135 ----LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 706 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
           L+L+   L  +IP  L  L  L    ++ N+LS
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
            +P  I   T  + LNL  N +      +F +LRH+E L LS N +          L  L
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 728 AIFIVAYNNLS 738
               +  N L+
Sbjct: 115 NTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 7e-26
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370
           +   +  +       +P     I  +  Y N+  N +      +F ++  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 429
           +  +I         +L  L L +N L   I S  F  L  LR L L  N        + +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 430 KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 488
           +  SL  L L        I       L  L+++ +   +++  +P     L  L+ L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMS 226

Query: 489 DNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
            N+     P  F+ L S+K++ +  + +   ++   F   +SLV L+L++N L+    D 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 548 IDGLSQLSHLNLAHNNL 564
              L  L  L+L HN  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 9e-26
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
              +  +   L+ E+P  +     N  +L+L  N+++  I +  F  L +L  L L  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 478
                  + +  +SL  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNR 169

Query: 479 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           + SL  LD+ +      +    F  L ++K ++L    +              L  L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMS 226

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
            N+     P    GLS L  L + ++ +          L  L  L+L+ NNL  L    F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 597 DN 598
             
Sbjct: 287 TP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 9e-20
 Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 64/288 (22%)

Query: 481 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
           + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N+
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDN 598
           L        + LS+L  L L +N +E        R+  L  LDL +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                                L  L  L
Sbjct: 195 -----------------------------------------------------LFNLKYL 201

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
           +L    +     P +  L  ++ L +S N+     P +F  L  ++ L +  +++S    
Sbjct: 202 NLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 719 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 763
                L +L    +A+NNLS  +P     F             NP+ C
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDL--FTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 59/224 (26%), Positives = 85/224 (37%), Gaps = 17/224 (7%)

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 329
           I         +   LE L L  +S+     G F         L  L++ +N     IP  
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLT-VIPSG 141

Query: 330 IGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNLE 387
             + L  L    +  N +  SIPS +F  V  L  LDL    KL   I +       NL+
Sbjct: 142 AFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLK 199

Query: 388 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 446
           +L+L   ++K     +    L  L  L + GNHF    P S    SSLK L++ N+ +S 
Sbjct: 200 YLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 447 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 490
                   L  L  + +  N+L       F  L  L  L +  N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 13/191 (6%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 64
            SLNTL L  N  T   +        + L  L L ++ +  S+     +  PSL  L + 
Sbjct: 123 ASLNTLELFDNWLTVIPSGA--FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 65  GCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNS 124
             +    +S   F    +L++L++    I    +        +  L+ L +SG+      
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVGLEELEMSGNHF---- 230

Query: 125 SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL 184
             I       L+ L++L++ N+ +            SL  L+++ N L+ S+       L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPL 289

Query: 185 TSIEELRLSNN 195
             + EL L +N
Sbjct: 290 RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 45/217 (20%), Positives = 68/217 (31%), Gaps = 42/217 (19%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           S+   L+L  N +     D    L  L  L L  N++          L  L  L+L DN 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 588 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 642
           L  +    F+       L    N   S P   F                           
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR------------------------- 169

Query: 643 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 701
                    +  L  LDL   K + +I       L  ++ LNL   N+   +P   + L 
Sbjct: 170 ---------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 702 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
            +E L++S N      P     L++L    V  + +S
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 45/274 (16%)

Query: 53  SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 110
            I  + + L++    +  + +   F H   LE L +    I      +F       + SL
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 169
             L L  + L    + I       L+ L+EL++ NN +     +      SL  LD+   
Sbjct: 126 NTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 170 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 229
            +L   IS      L +++ L L   + +    +  L     L+  +   N    EI   
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EI-RP 235

Query: 230 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 289
            S      LK L + ++                           +        +    L 
Sbjct: 236 GSFHGLSSLKKLWVMNS--------------------------QVSLIERNAFDGLASLV 269

Query: 290 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 323
            L L +++L+          + L  L + +N + 
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 59/213 (27%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           +    +  +   L+  +P  I   S   +LNL  NN++         L+ L++L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
           +  +    F+                                                  
Sbjct: 111 IRQIEVGAFNG------------------------------------------------- 121

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 706
               L+ L  L+L  N L   IP      L++++ L L +N +       F+ +  +  L
Sbjct: 122 ----LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 707 DLS-YNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
           DL    KL          L  L    +   N+ 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 2e-24
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 23/281 (8%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNK 370
           ++ LD+SNN    +I         +L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSL 428
           L+  +         +L FL+L  N  K    + +FS L  L+ L +       +I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 429 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 488
           +  + L+ L ++ ++L    P+ L +++ + H+++        + +      S++ L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
           D ++     S                        +     +   + ++   L   +   +
Sbjct: 231 DTDLDTFHFSELSTGET----------------NSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 549 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           + +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (259), Expect = 5e-24
 Identities = 63/298 (21%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 482
           IP  L+   ++K L L+NN ++      L     LQ +V+  N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 483 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 542 GSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
             I      GL+ L  L +  ++L+   P  L  +  +  L L       L+    D T+
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL-----L 655
                                     SVE   L   +  T + +    G   SL      
Sbjct: 223 --------------------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713
             + ++   L   +   +  ++ +  L  S N L       F  L  ++ + L  N  
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 75/316 (23%)

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219
            +++ LD+S N++T  IS+S L    +++ L L++N      ++E          F    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 279
                      SL     L+ L LS N                       ++  +    +
Sbjct: 98  -----------SLG---SLEHLDLSYN-----------------------YLSNL---SS 117

Query: 280 WLLENNTKLEFLYLVNDSL-----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 334
              +  + L FL L+ +          F        +L+ L V N +    I  +    L
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 335 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394
             L    I  + L    P S  ++  +  L L   +    + +       ++E L L + 
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 395 SLKGHIFSRIFS--------LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 446
            L    FS + +            R + +       ++ + L++ S L  L  + N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 447 KIPRW-LGNLKGLQHI 461
            +P      L  LQ I
Sbjct: 292 -VPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 49/255 (19%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDN 586
            ++ +LDLS N +       +     L  L L  N +   +       L  L+ LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 587 NLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 642
            L  L  S F      T L+   N   +                                
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKT-------------------------------- 138

Query: 643 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 701
           +        L+ L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 702 HIESLDLSYNKLSGKIPR---------QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 752
           ++  L L   +    +           + ++L    +    ++ LS        +  TF 
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 753 KSSYDGNPFLCGLPL 767
                       + L
Sbjct: 258 NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 19/202 (9%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS-IF---PSLKN 60
            SL  L+L  N +  TL  T    + T L+ L +     ++     I    F     L+ 
Sbjct: 124 SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV----GNMDTFTKIQRKDFAGLTFLEE 178

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L +   ++            +++ HL +   +       L+I  +   S++ L L  + L
Sbjct: 179 LEIDASDLQSYEPK-SLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDL 234

Query: 121 GTNSSRILDQG----LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
            T     L  G    L      + + I +  L   +   L   + L  L+ S NQL  S+
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SV 292

Query: 177 SSSPLVHLTSIEELRLSNNHFR 198
                  LTS++++ L  N + 
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 30/257 (11%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSL 58
           G   ++ +L L +N  T    +   L    NL+ L L     +++      S+     SL
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNGINTIEEDSFSSL----GSL 102

Query: 59  KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 118
           ++L +S   +   LS   F    SL  L+       L  +  + +GE+        L   
Sbjct: 103 EHLDLSYNYL-SNLSSSWFKPLSSLTFLN-------LLGNPYKTLGETSLFSHLTKLQIL 154

Query: 119 TLGTNS--SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
            +G     ++I  +    L  L+EL ID +DL+   P  L +  ++  L +   Q    +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 177 SSSPLVHLTSIEELRLSNNHFRI-------PVSLEPLFNHSKLKIFDAKNNEINGEINES 229
               +   +S+E L L +                  L      +     +  +   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 230 HSLTPKFQLKSLSLSSN 246
           + ++    L  L  S N
Sbjct: 274 NQIS---GLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 10/174 (5%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQE--LHNFTNLEYLTLDD---SSLHISLLQSIGSIFP 56
             F  L  L +       T T  Q       T LE L +D     S     L+SI     
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI----Q 198

Query: 57  SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 116
           ++ +L +   +   +L         S+E L++R   +          GE+   +K  +  
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 117 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 170
              +   S   + + L  ++ L EL    N L+          TSL+ + +  N
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 42/216 (19%), Positives = 66/216 (30%), Gaps = 62/216 (28%)

Query: 527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586
           C        S   LN SIP  +     +  L+L++N +       L R   LQ L L+ N
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646
            ++ +    F +                                                
Sbjct: 87  GINTIEEDSFSS------------------------------------------------ 98

Query: 647 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIP--LTFSNLRHI 703
                L  L  LDLS N L  ++       L+ +  LNL  N    T+     FS+L  +
Sbjct: 99  -----LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151

Query: 704 ESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 738
           + L +       KI R+    L  L    +  ++L 
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 4e-24
 Identities = 68/475 (14%), Positives = 148/475 (31%), Gaps = 97/475 (20%)

Query: 134 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
           P  +         +++ +         +L  LD   + +T     + +  LT + +L  +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICT 72

Query: 194 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
           +N+         L  ++ L      +N++      +  +TP  +L  L+  +N       
Sbjct: 73  SNNITTL----DLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTN------- 116

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 313
                   +L + ++S               N  L +L    ++L     + +  + +L 
Sbjct: 117 --------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLT 151

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 373
            LD   N     + V        L   + S N +             L  L+   N +T 
Sbjct: 152 ELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT- 204

Query: 374 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 433
           ++  +     + L FL  S+N L     +    L  L +     N    E+   +S  S 
Sbjct: 205 KLDLNQ---NIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSK 255

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
           L  L+    +L  +I   L +   L +           +  +      L +LD     I+
Sbjct: 256 LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

Query: 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553
             L                                 LV L L+   L   +   +   ++
Sbjct: 311 -ELD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTK 340

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 608
           L  L+  + +++ +    + ++  L     ++     +      N +L  + + +
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 3e-23
 Identities = 76/410 (18%), Positives = 143/410 (34%), Gaps = 47/410 (11%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG--EIPDHLAMCCVNLEFL 389
           D   S V     M A D     S   +  L  LD  N+ +T    I          L  L
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTGIEK-----LTGLTKL 69

Query: 390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 449
             ++N++     S      NL +L  + N     +   ++  + L  L  + N L+ K+ 
Sbjct: 70  ICTSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD 122

Query: 450 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 509
             +     L ++   +N L     ++      L  LD   N     L        +  + 
Sbjct: 123 --VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLD 176

Query: 510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569
            S N    ++ E        L  L+   N +   +   ++   QL+ L+ + N L     
Sbjct: 177 CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE--- 226

Query: 570 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 628
           I +  L QL   D S N L  L  S     TTLH    +    D    T       +G  
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSL-------LAGLDLSCNKLVGHIPPQIGNLTRIQT 681
           + K L++   T   +       +  L       L  L L+  +L   +   + + T++++
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 682 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 731
           L+  + ++      +   +  + +   +  +    +P++ +  N+L I +
Sbjct: 344 LSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 79/468 (16%), Positives = 136/468 (29%), Gaps = 51/468 (10%)

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
                     +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 407
             ++         L +L   +NKLT      L      L +L+   N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKLDVS---QN 126

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467
             L +L    N    EI   +S  + L  L  + N    K+   +     L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 527
           +     ++  +   L  L+   NNI+  L        +  +  S N    +L E      
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDVTPL 232

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           + L   D S N L   +      LS+L+ L+    +L     I L    QL         
Sbjct: 233 TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
               +     NT L+      +       T   +S     +    L   E T  ++++  
Sbjct: 287 KIKELDVT-HNTQLYLLDCQAAGI-----TELDLSQNP-KLVYLYLNNTELTELDVSH-- 337

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
                + L  L      +       +G +  +     +          T +N     ++ 
Sbjct: 338 ----NTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 708 LSYNKLSG---KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 752
                  G    I      +   A   + + NLS   P  T  F + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 71/444 (15%), Positives = 130/444 (29%), Gaps = 60/444 (13%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
           FP  N     +  F    T T        L  L     +  I+ +  I      L  L  
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDC--HNSSITDMTGIEK-LTGLTKLIC 71

Query: 64  SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 123
           +       ++        +L +L     ++        +    +  L YL+   + L   
Sbjct: 72  TSNN----ITTLDLSQNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDTNKLTKL 121

Query: 124 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 183
                   +     L  L    N L   +   +++ T L  LD   N+    I+   +  
Sbjct: 122 D-------VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTP 168

Query: 184 LTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 242
            T +  L  S N    + VS      +  L   +   N I         L    QL  L 
Sbjct: 169 QTQLTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLD 218

Query: 243 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 302
            SSN    +          +L   + S    + E         +KL  L+ +   L    
Sbjct: 219 CSSNKLTEIDVTPLT----QLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDLL--- 267

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
            + +  + +L +           + V        L   +     +   +         L 
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
           +L L+N +LT E+          L+ LS  N  ++   FS +  +  L          + 
Sbjct: 322 YLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSG 446
              ++L+  S    +  +  +  G
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 63/390 (16%), Positives = 120/390 (30%), Gaps = 69/390 (17%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 409
           S    F +  F   +  +      +           L  L   N+S+     + I  L  
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQ--LATLTSLDCHNSSITD--MTGIEKLTG 65

Query: 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469
           L  L+   N+    +   LS+ ++L  L  ++N L+  +   +  L  L ++    N L 
Sbjct: 66  LTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 470 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 529
               ++  +   L  L+ + N ++  +        + ++    N     + +      + 
Sbjct: 120 ---KLDVSQNPLLTYLNCARNTLT-EIDVSHNT-QLTELDCHLNKK---ITKLDVTPQTQ 171

Query: 530 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           L TLD S+N +   +   +     L+ LN   NN+     + L +  QL  LD S N L 
Sbjct: 172 LTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT 225

Query: 590 GLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 648
            +  +     T    S N  +  D                                    
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDV----------------------------------- 250

Query: 649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 708
              LS L  L      L+  I   + + T++               L  ++   +  LD 
Sbjct: 251 -STLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKI--KELDVTHNTQLYLLDC 304

Query: 709 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
               ++     Q   L  L    +    L+
Sbjct: 305 QAAGITELDLSQNPKLVYL---YLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 71/406 (17%), Positives = 116/406 (28%), Gaps = 90/406 (22%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
               +L  L  +SN       T  ++   T L YL  D + L    +    S  P L  L
Sbjct: 82  SQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTNKLTKLDV----SQNPLLTYL 132

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
           + +       L+     H   L  LD        N    ++       L  L  S     
Sbjct: 133 NCARNT----LTEIDVSHNTQLTELDCHL-----NKKITKLDVTPQTQLTTLDCSF---- 179

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
            N    LD  +     L  L  D N++   L   L     L  LD S N+LT       +
Sbjct: 180 -NKITELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT----EIDV 229

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LT +     S N      +   +   SKL                         L  +
Sbjct: 230 TPLTQLTYFDCSVNPL----TELDVSTLSKLTTLHCIQT----------------DLLEI 269

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
            L+ N               +L   +    + I E     + +NT+L  L      +   
Sbjct: 270 DLTHNT--------------QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT-- 310

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
             L +  + +L +L ++N      + V        L   +     +      S G +  L
Sbjct: 311 -ELDLSQNPKLVYLYLNNTELT-ELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPAL 363

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 407
                +  +               +   +L+NNSL   +   +   
Sbjct: 364 NNNFEAEGQTI------------TMPKETLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 40/252 (15%), Positives = 67/252 (26%), Gaps = 37/252 (14%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKN 60
                LN L+ ++NN      T  +L+    L +L    + L  I +          L  
Sbjct: 188 SQNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLDCSSNKLTEIDVTP-----LTQLTY 237

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
              S       L+         L  L          T  L+I       L Y    G   
Sbjct: 238 FDCSVNP----LTELDVSTLSKLTTLHCI------QTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
                      +     L  L      +   L   L+    L  L ++  +LT       
Sbjct: 288 IKELD------VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT----ELD 334

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
           + H T ++ L   N H +       +     L        +      E+ +        S
Sbjct: 335 VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 241 LSLSSNYGDSVT 252
             L   +G+ + 
Sbjct: 392 PDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 35/231 (15%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKN 60
                L       N       T  ++   + L  L    + L  I L     +    L  
Sbjct: 230 TPLTQLTYFDCSVNPL-----TELDVSTLSKLTTLHCIQTDLLEIDL-----THNTQLIY 279

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
               G      +      H   L  LD + A I       ++     P L YL L+    
Sbjct: 280 FQAEG---CRKIKELDVTHNTQLYLLDCQAAGIT------ELDLSQNPKLVYLYLNN--- 327

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT----GSI 176
                  LD  +     L+ L   N  ++      +    +L     +  Q       ++
Sbjct: 328 --TELTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETL 381

Query: 177 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
           +++ L    S + L    N   I      +++ +   I     +  N  + 
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
            Q + L  N+++  +P      C NL  L L +N L   I +  F+ L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 420 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 477
            +  +  +       L  L+L+   L    P     L  LQ++ +  N L+  +P + F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 478 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
            L +L  L +  N IS                         + E  F    SL  L L  
Sbjct: 151 DLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLLHQ 186

Query: 538 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           N +   +       L +L  L L  NNL       L  L  LQ L L+DN   
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 9e-23
 Identities = 53/260 (20%), Positives = 84/260 (32%), Gaps = 34/260 (13%)

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
            ++            Q  +P     I  +     +  N +     +SF     L  L L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 368 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQ 426
           +N L   I          LE L LS+N+    +    F  L  L  L L+      E+  
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 427 -SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485
                 ++L+ LYL +N L         +L  L H+ +  N +       F  L SL  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545
            +  N ++                         +    F +   L+TL L  N L+ ++P
Sbjct: 183 LLHQNRVA------------------------HVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 546 DWI-DGLSQLSHLNLAHNNL 564
                 L  L +L L  N  
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 5/194 (2%)

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467
              + + L GN        S   C +L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 468 LEGPIPVE-FCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTF 524
               +    F  L  L  L +    +   L    F  L +++ ++L  N L   L + TF
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
            +  +L  L L  N ++        GL  L  L L  N +    P     L +L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 585 DNNLHGLIPSCFDN 598
            NNL  L       
Sbjct: 210 ANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 483 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           + LD+SDN    S+    F+ L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 541 NGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN- 598
             ++PD     L  L+HL L  N +          L+ L  L L  N +  + P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 599 ---TTLHESYNN 607
               TL+   NN
Sbjct: 201 GRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 57/292 (19%), Positives = 89/292 (30%), Gaps = 65/292 (22%)

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSC 595
            N L         GL+ L  L+L+ N     V       L +L  L L    L  L P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655
           F                                                       L+ L
Sbjct: 125 FRG-----------------------------------------------------LAAL 131

Query: 656 AGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
             L L  N L   +P     +L  +  L L  N ++      F  L  ++ L L  N+++
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 715 GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 763
              P    DL  L    +  NNLS  +P      A      Y   + NP++C
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPT--EALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 19/200 (9%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLK 59
           +  +L  L L SN                 LE L L D++  +  +    + F     L 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAA--FTGLALLEQLDLSDNA-QLRSVDP--ATFHGLGRLH 108

Query: 60  NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGS 118
            L +  C +   L    F    +L++L ++   + AL     +     + +L +L L G+
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHGN 163

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 178
            +    S + ++    L  L  L +  N +    P    +   L  L +  N L+ ++ +
Sbjct: 164 RI----SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

Query: 179 SPLVHLTSIEELRLSNNHFR 198
             L  L +++ LRL++N + 
Sbjct: 219 EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 37/220 (16%), Positives = 67/220 (30%), Gaps = 23/220 (10%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSLKN 60
             +   + L  N  +             NL  L L     + +  +    +      L+ 
Sbjct: 31  PAASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGL----ALLEQ 84

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 118
           L +S       +    F     L  L +    +       F       + +L+YL L  +
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDN 139

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 178
            L      + D     L +L  L++  N +            SL  L +  N++   +  
Sbjct: 140 AL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 179 SPLVHLTSIEELRLSNNHFR-IPVS-LEPLFNHSKLKIFD 216
                L  +  L L  N+   +P   L PL     L++ D
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 81/284 (28%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
           A  Q +++  N +            +L IL +  N L   I ++    L  +E+L LS+N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
             ++  S++P         F              H L    +L +L L            
Sbjct: 91  A-QL-RSVDP-------ATF--------------HGLG---RLHTLHLDRC--------- 115

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 315
                       L  +         L      L++LYL                      
Sbjct: 116 -----------GLQEL------GPGLFRGLAALQYLYL---------------------- 136

Query: 316 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 375
              +N  Q  +P +    L +L +  +  N +      +F  +  L  L L  N++   +
Sbjct: 137 --QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 376 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGN 418
             H       L  L L  N+L   + +     LR L++L L  N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 48/289 (16%), Positives = 83/289 (28%), Gaps = 83/289 (28%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
            + + + L G+ +    S +         +L  L++ +N L             L  LD+
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
           S N    S+  +    L  +  L L     +    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 287
               L     L+ L L  N                     L  +      P+    +   
Sbjct: 127 ---GLA---ALQYLYLQDN--------------------ALQAL------PDDTFRDLGN 154

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
           L  L+L                 R+  +      F+G         L SL    +  N +
Sbjct: 155 LTHLFL--------------HGNRISSV--PERAFRG---------LHSLDRLLLHQNRV 189

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 396
               P +F ++  L  L L  N L+  +P         L++L L++N  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 2e-22
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 73/332 (21%)

Query: 281 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 340
             +   K        +       L      +   L ++  N    +P  +    P +   
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 341 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
            I+ NAL  S+P    +   L++LD  +N+L+  +P+  A    +L+ L + NN L   +
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--M 134

Query: 401 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
                    L ++  + N     +P+  +   SL+ L + NN L+  +P    +L     
Sbjct: 135 LPE--LPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPESL----- 182

Query: 461 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 520
                                 + LD+S N +  SLP+                     +
Sbjct: 183 ----------------------EALDVSTNLLE-SLPAVPVRNH-------------HSE 206

Query: 521 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 580
           E       + +      N +   IP+ I  L     + L  N L   +   L +      
Sbjct: 207 E-------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 581 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 612
                                         P+
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 3e-20
 Identities = 58/367 (15%), Positives = 98/367 (26%), Gaps = 103/367 (28%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI--FSL 407
           SI     N   L   +   N ++              E  +L   + +    S +    +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLI 58

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467
                L L   +    +P +L     +  L +  N L   +P    +L+ L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNR 111

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 527
           L   +P       SL+ LD+ +N ++  LP                              
Sbjct: 112 LST-LPELPA---SLKHLDVDNNQLT-MLPELP--------------------------- 139

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
           + L  ++   N L   +P+     + L  L++ +N L   +P        L+ LD+S N 
Sbjct: 140 ALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNL 191

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
           L  L      N                                                 
Sbjct: 192 LESLPAVPVRNHHS---------------------------------------------- 205

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
                          N++  HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 206 ----EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 708 LSYNKLS 714
                 S
Sbjct: 261 GPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 61/295 (20%)

Query: 439 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 497
              N +SG    +       +   +P  N  E    ++ C ++    L ++  N+S SLP
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP 75

Query: 498 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 557
               P  I  + +++N L   L E      +SL  LD   N L+ ++P+     + L HL
Sbjct: 76  DNLPP-QITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELP---ASLKHL 125

Query: 558 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN-NSSPDKPFK 616
           ++ +N L   +P        L+ ++  +N L  L         L    N     P+    
Sbjct: 126 DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE---- 177

Query: 617 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 676
                                             +   L  LD+S N L   +P      
Sbjct: 178 ----------------------------------LPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 677 TRIQT----LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
              +          N +T  IP    +L    ++ L  N LS +I   L      
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 2e-17
 Identities = 66/441 (14%), Positives = 123/441 (27%), Gaps = 99/441 (22%)

Query: 156 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKI 214
            +         +       ++S      +    EL+L+  +   +P +L P         
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP--------- 80

Query: 215 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 274
                                 Q+  L ++ N                           +
Sbjct: 81  ----------------------QITVLEITQN--------------------------AL 92

Query: 275 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 334
              P         LE+L   ++ L+    LP      L+ LDV NN     +P       
Sbjct: 93  ISLPELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQLT-MLPELPA--- 140

Query: 335 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394
             L Y N   N L   +P    +   L+ L + NN+LT  +P+       +LE L +S N
Sbjct: 141 -LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE----SLEALDVSTN 190

Query: 395 SLKGHIFSRIFSLRNLR----WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450
            L+  + +      +      +     N     IP+++        + L +N LS +I  
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 510
            L           P+ +    +           + D        +  S         V  
Sbjct: 249 SLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS--------DVSQ 298

Query: 511 SKNMLHGQLKEGTFFNCSSLVTLDLSYN---YLNGSIPDWIDGLSQLSHLNLAHNNLEGE 567
             +    +    TF      ++  +S          +  W++ LS  + L      +  +
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 568 VPIQLCRLNQLQLLDLSDNNL 588
                     L   +L    L
Sbjct: 359 ATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 64/282 (22%)

Query: 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 531
               + + +   +   + N     L  C       ++ L++  L   L +        + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRLNLS-SLPDNLP---PQIT 83

Query: 532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
            L+++ N L  S+P+     + L +L+   N L   +P        L+ LD+ +N L  L
Sbjct: 84  VLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTML 135

Query: 592 IPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649
            P        ++   N  +  P+                                     
Sbjct: 136 -PELPALLEYINADNNQLTMLPEL------------------------------------ 158

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES---- 705
              + L  L +  N+L   +P    +L     L++S N L  ++P       H E     
Sbjct: 159 --PTSLEVLSVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 706 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747
                N+++  IP  ++ L+     I+  N LS +I E  +Q
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 55/346 (15%), Positives = 100/346 (28%), Gaps = 69/346 (19%)

Query: 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 168
             +  +L G       S + +   C +    EL ++  +L  SLP  L     + +L+++
Sbjct: 35  KWEKQALPGENRNEAVSLLKE---CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEIT 88

Query: 169 FNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
            N L  S+   P     S+E L   +N    +P     L     L + + +   +     
Sbjct: 89  QNALI-SLPELP----ASLEYLDACDNRLSTLPELPASL---KHLDVDNNQLTMLPELPA 140

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 287
                     L+ ++  +N                           +   P       T 
Sbjct: 141 ---------LLEYINADNN--------------------------QLTMLPELP----TS 161

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI---LPSLVYFNISM 344
           LE L + N+ L     LP    + L  LDVS N  +  +P           + ++F    
Sbjct: 162 LEVLSVRNNQLTFLPELP----ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRE 216

Query: 345 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 404
           N +   IP +  ++     + L +N L+                              + 
Sbjct: 217 NRI-THIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 405 FSLRNL-----RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 445
              R L      W        V +I  +              + LS
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 6e-12
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 54/217 (24%)

Query: 531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLH 589
           ++ +  YN ++G+  D+     +     L   N    V  ++ C +NQ   L L+  NL 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 590 GLIPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
            L  +     T L  + N   S P+ P                                 
Sbjct: 73  SLPDNLPPQITVLEITQNALISLPELPAS------------------------------- 101

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
                  L  LD   N+L   +P    +L     L++ +N LT  +P   + L +   ++
Sbjct: 102 -------LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---IN 146

Query: 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 744
              N+L+  +P     L  L    V  N L+  +PE 
Sbjct: 147 ADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 34/225 (15%), Positives = 72/225 (32%), Gaps = 42/225 (18%)

Query: 4   FPSLNTLHLESNNFT------ATLTTTQELHN--------FTNLEYLTLDDSSLHISLLQ 49
            P +  L +  N         A+L       N          +L++L +D++      L 
Sbjct: 79  PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQ-----LT 133

Query: 50  SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 109
            +  +   L+ ++    ++  +          SLE L +R  +       L  + E   S
Sbjct: 134 MLPELPALLEYINADNNQLTMLPEL-----PTSLEVLSVRNNQ-------LTFLPELPES 181

Query: 110 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQE----LYIDNNDLRGSLPWCLANTTSLRIL 165
           L+ L +S + L +     L        H +E         N +   +P  + +      +
Sbjct: 182 LEALDVSTNLLES-----LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 210
            +  N L+ S     L   T+  +      +F +    +   +  
Sbjct: 236 ILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 25/191 (13%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
              SL  L +++N     LT   EL     LEY+  D++ L   L +   S    L+ LS
Sbjct: 118 LPASLKHLDVDNNQ----LTMLPEL--PALLEYINADNNQLT-MLPELPTS----LEVLS 166

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           +   ++  +         +SLE LD+           L+ +        +   +      
Sbjct: 167 VRNNQLTFL-----PELPESLEALDVSTNL-------LESLPAVPVRNHHSEETEIFFRC 214

Query: 123 NSSRI--LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
             +RI  + + +  L     + +++N L   +   L+  T+           + S     
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 181 LVHLTSIEELR 191
            +H    + + 
Sbjct: 275 TLHRPLADAVT 285

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.1 bits (239), Expect = 8e-22
 Identities = 66/301 (21%), Positives = 105/301 (34%), Gaps = 43/301 (14%)

Query: 281 LLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEIGDILPSLVY 339
           L      LE+L    D+ A   +         L+ L V        I      +L     
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL----- 92

Query: 340 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKG 398
                             +  LQ L L N ++TG  P   L     +L  L+L N S   
Sbjct: 93  -----------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 399 HIFS----RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--- 451
                   + +    L+ L +   H +    + +    +L  L L++N   G+       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 452 -LGNLKGLQHIVMPKNHLE---GPIPVEFCRLDSLQILDISDNNISGSLP--SCFYPLSI 505
                  LQ + +    +E   G           LQ LD+S N++  +    SC +P  +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 506 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 565
             ++LS   L  Q+ +G     + L  LDLSYN L+   P   D L Q+ +L+L  N   
Sbjct: 256 NSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFL 309

Query: 566 G 566
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 52/299 (17%), Positives = 84/299 (28%), Gaps = 35/299 (11%)

Query: 156 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLK 213
                SL  L    +        + ++   S++ L +       RI      +   S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 214 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 273
               +N E+ G             L  L+L +      T   +L                
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL---------------- 140

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE---I 330
             E   WL      L      + + +      +     L  LD+S+N   G   +     
Sbjct: 141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALC 196

Query: 331 GDILPSLVYFNISMN---ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 387
               P+L    +         G   +     + LQ LDLS+N L              L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 446
            L+LS   LK  +   + +   L  L L  N      P    +   +  L L  N    
Sbjct: 257 SLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 62/309 (20%)

Query: 406 SLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRW---LGNLKGLQHI 461
             R+L +LL   +          + K  SLK L +    +  +I      +  + GLQ +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 462 VMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLP-----SCFYPLSIKQVHLSKNM 514
            +    + G  P          L IL++ + + +           +    +K + +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 515 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGLSQLSHLNLAHNNLE---GE 567
                         +L TLDLS N   G               L  L L +  +E   G 
Sbjct: 161 S-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 568 VPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDNTTLHE---SYNNNSSPDKPFKTSFSIS 622
                    QLQ LDLS N+L       SC   + L+    S+                 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------- 263

Query: 623 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 682
                    + ++ +                 L+ LDLS N+L     P    L ++  L
Sbjct: 264 --------GLKQVPKGLPAK------------LSVLDLSYNRLDR--NPSPDELPQVGNL 301

Query: 683 NLSHNNLTG 691
           +L  N    
Sbjct: 302 SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 48/248 (19%), Positives = 74/248 (29%), Gaps = 38/248 (15%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
               L  L LE+   T T           +L  L L + S       +  +    L+   
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----WATRDAWLAELQQWL 147

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
                               L+ L +  A      +F        P+L  L LS +    
Sbjct: 148 KP-----------------GLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLR---GSLPWCLANTTSLRILDVSFNQLTGSISSS 179
               I          LQ L + N  +    G      A    L+ LD+S N L  +  + 
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 180 PLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 238
                + +  L LS    + +P  L       KL + D   N ++        L    Q+
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP---QV 298

Query: 239 KSLSLSSN 246
            +LSL  N
Sbjct: 299 GNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 57  SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 116
           +++   +    + G L   G    + L   ++        T+   ++  + P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLR 129

Query: 117 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
             +  T  + + +        L+ L I            +    +L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 177 S---SSPLVHLTSIEELRLSNNHFRIPVSLEP--LFNHSKLKIFDAKNNEINGEINESHS 231
               +   +   +++ L L N     P  +         +L+  D  +N +         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 232 LTPKFQLKSLSLSSNYGDSVT 252
             P  QL SL+LS      V 
Sbjct: 250 DWPS-QLNSLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 34/247 (13%)

Query: 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNL 559
            S++ +    +      +        SL  L +    +   I      + G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 560 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 619
            +  + G  P  L       L  L+  N+           T            KP     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQQWLKPGLKVL 154

Query: 620 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP----PQIGN 675
           SI+             F           Q RV   L+ LDLS N  +G            
Sbjct: 155 SIAQAH-------SLNFSCE--------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 676 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQL-VDLNTLAIFI 731
              +Q L L +  +    G      +    ++ LDLS+N L            + L    
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 732 VAYNNLS 738
           +++  L 
Sbjct: 260 LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 1   MGSFPSLNTLHLESNNFT--ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF--- 55
           +  FP+L+TL L  N       L +      F  L+ L L ++ +  +      ++    
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAAR 227

Query: 56  PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 115
             L+ L +S   +              L  L++ F  +       Q+       L  L L
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------QVPKGLPAKLSVLDL 281

Query: 116 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 151
           S + L  N S         L  +  L +  N    S
Sbjct: 282 SYNRLDRNPSPDE------LPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.4 bits (225), Expect = 3e-19
 Identities = 75/417 (17%), Positives = 144/417 (34%), Gaps = 60/417 (14%)

Query: 81  KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 140
             ++ LD++   +  + +    +   +   + + L    L     + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 141 LYIDNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELR 191
           L + +N+L      C+       +  ++ L +    LT    G +SS+ L  L +++EL 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 192 LSNNHFRIPVSLEPLF-----NHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLS 244
           LS+N       L+ L         +L+    +   ++    E  +  L  K   K L++S
Sbjct: 120 LSDNLLG-DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 245 SNY-GDSV--TFPKFLYHQHE-LKEAELSH-------IKMIGEFPNWLLENNTKLEFLYL 293
           +N   ++      + L      L+  +L          + +      ++ +   L  L L
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG----IVASKASLRELAL 234

Query: 294 VNDSL--AGPFRL---PIHSHKRLRFLDVSNNNFQGHIPVEIGDIL---PSLVYFNISMN 345
            ++ L   G   L    +H   RLR L +           ++  +L    SL   +++ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 346 ALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLK 397
            L           +      L+ L + +   T     H +        L  L +SNN L+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 398 GHIFSRI-----FSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLS 445
                 +          LR L L            +  +L    SL+ L L+NN L 
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 74/464 (15%), Positives = 158/464 (34%), Gaps = 75/464 (16%)

Query: 31  TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLD 87
            +++ L +    L  +    +  +    + + +  C +                +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 88  MRFARIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 143
           +R   +      +  + + +      ++ LSL    L      +L   L  L  LQEL++
Sbjct: 63  LRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 144 DNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELRLSN 194
            +N L  +    L          L  L + +  L+      ++S  L      +EL +SN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSN 179

Query: 195 NHFRIPVSLEPL-----FNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSNY 247
           N       +  L      +  +L+    ++  +  +        +  K  L+ L+L SN 
Sbjct: 180 NDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 248 -GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF 302
            GD                     +  +      LL  +++L  L++    +     G  
Sbjct: 239 LGD-------------------VGMAELCPG---LLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL----PSLVYFNISMNALDGSIPSSFGNV 358
              + + + L+ L ++ N         + + L      L    +   +   +  S F +V
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 359 I----FLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFS 406
           +    FL  L +SNN+L       +   L      L  L L++  +       + + + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 407 LRNLRWLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLS 445
             +LR L L  N      + ++ +S+ +    L+ L L +   S
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 87/532 (16%), Positives = 151/532 (28%), Gaps = 148/532 (27%)

Query: 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSLRI 164
            ++ L +    L       L   L      Q + +D+  L       +   L    +L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 165 LDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 220
           L++  N+L       +          I++L L N           L              
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVL-------------- 105

Query: 221 EINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 279
                   S +L     L+ L LS N  GD+                    ++++ E   
Sbjct: 106 --------SSTLRTLPTLQELHLSDNLLGDAG-------------------LQLLCEG-- 136

Query: 280 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 335
            LL+   +LE L L   SL      P    + +    + L VSNN+        +   L 
Sbjct: 137 -LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 336 ----SLVYFNISMNALDGSIPSSFGNVI----FLQFLDLSNNKLTGE----IPDHLAMCC 383
                L    +    +          ++     L+ L L +NKL       +   L    
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 384 VNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK-----CSSL 434
             L  L +    +     G +   + +  +L+ L L GN    E  + L +        L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 435 KGLYLNNNNLSGKIPRWLGNLKGLQHI--VMPKNHLEGPIPVEFCRLDSLQILDISDNNI 492
           + L++ + + +              H   V+ +N               L  L IS+N +
Sbjct: 316 ESLWVKSCSFTAA---------CCSHFSSVLAQNR-------------FLLELQISNNRL 353

Query: 493 SGS----------LPSCFYPLSIKQVHLSKNMLHGQLKEGTFF------NCSSLVTLDLS 536
             +           P       ++ + L+   +                   SL  LDLS
Sbjct: 354 EDAGVRELCQGLGQPGS----VLRVLWLADCDVSD---SSCSSLAATLLANHSLRELDLS 406

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
            N L  +      G+ QL    +                  L+ L L D   
Sbjct: 407 NNCLGDA------GILQLVES-VRQPG------------CLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 76/460 (16%), Positives = 137/460 (29%), Gaps = 110/460 (23%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD----GSIPSSFGNVIFLQFLDLS 367
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 368 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNH 419
           +N+L       +   L      ++ LSL N  L     G + S + +L  L+ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 420 FVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGN-LKGLQHIVMPKNHLEGPIP 473
                 Q L +        L+ L L   +LS      L + L+                 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------------- 171

Query: 474 VEFCRLDSLQILDISDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKE 521
                    + L +S+N+I+ +        L     P  ++ + L    +       L  
Sbjct: 172 --------FKELTVSNNDINEAGVRVLCQGLKDS--PCQLEALKLESCGVTSDNCRDLCG 221

Query: 522 GTFFNCSSLVTLDLSYNYLNGS-----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL- 575
               + +SL  L L  N L         P  +   S+L  L +    +  +    LCR+ 
Sbjct: 222 I-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 576 ---NQLQLLDLSDNNLH---------GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 623
                L+ L L+ N L           L+       +L     +                
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---------------- 324

Query: 624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG-----NLTR 678
                             + +          L  L +S N+L      ++        + 
Sbjct: 325 -----------FTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 679 IQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLS 714
           ++ L L+  +++     ++  T      +  LDLS N L 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 59/374 (15%), Positives = 123/374 (32%), Gaps = 67/374 (17%)

Query: 385 NLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYL 439
           +++ L +    L    ++ +   L+  + + L+          +I  +L    +L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GS 495
            +N L            G+  ++     L+ P          +Q L + +  ++    G 
Sbjct: 64  RSNELGDV---------GVHCVL---QGLQTPSC-------KIQKLSLQNCCLTGAGCGV 104

Query: 496 LPSCFYPL-SIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLN----GSIPD 546
           L S    L +++++HLS N+L       L EG       L  L L Y  L+      +  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 547 WIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNLHG--------LIP 593
            +        L +++N++       LC+       QL+ L L    +          ++ 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 594 SCFDNTTLHESYNNNSSPDKPFKT-SFSISGPQGSVEKKILEIFEFTT---KNIAYAYQG 649
           S      L    N     D         +  P   +    +     T     ++    + 
Sbjct: 225 SKASLRELALGSNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281

Query: 650 RVLSLLAGLDLSCNKL----VGHIPPQIGN-LTRIQTLNLSHNNLT--GTIPLT--FSNL 700
                L  L L+ N+L       +   +     ++++L +   + T       +   +  
Sbjct: 282 -AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 701 RHIESLDLSYNKLS 714
           R +  L +S N+L 
Sbjct: 341 RFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 80/421 (19%), Positives = 140/421 (33%), Gaps = 103/421 (24%)

Query: 5   PSLNTLHLESNNFT---ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSL 58
           P+L  LHL  N        L     L     LE L L+  SL  +  + + S+    P  
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 59  KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 118
           K L++S  +    ++  G                        Q + +S   L+ L L   
Sbjct: 173 KELTVSNND----INEAGV-------------------RVLCQGLKDSPCQLEALKLESC 209

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS-----LPWCLANTTSLRILDVSFNQLT 173
            + +++ R L   +   A L+EL + +N L         P  L  ++ LR L +    +T
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 174 ----GSISSSPLVHLTSIEELRLSNNHF------RIPVSLEPLFNHSKLKIFDAKNNEIN 223
               G +    L    S++EL L+ N         +  +L  L    +L+    K+    
Sbjct: 270 AKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETL--LEPGCQLESLWVKSCSFT 326

Query: 224 GE--INESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 280
                + S  L     L  L +S+N   D                   + ++ + +    
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLED-------------------AGVRELCQG--- 364

Query: 281 LLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 336
           L +  + L  L+L +  +           + ++  LR LD+SNN         +GD    
Sbjct: 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LGD---- 412

Query: 337 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 396
                  +  L  S+         L+ L L +   + E           L+ L     SL
Sbjct: 413 -----AGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEKDKPSL 457

Query: 397 K 397
           +
Sbjct: 458 R 458

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 9e-18
 Identities = 54/321 (16%), Positives = 106/321 (33%), Gaps = 28/321 (8%)

Query: 329 EIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 383
            I  I         +  N+   ++  ++      +  +  +  +N+ +   +   +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL- 64

Query: 384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 443
            N+  L L+ N L       + +L+NL WL L+ N  + ++  SL     LK L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 444 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 503
           +S  I   L +L  L+ + +  N +         RL  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 563
            ++ ++LSKN +   L+        +L  L+L          +    L   + +     +
Sbjct: 176 KLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 564 LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 623
           L     I      +        N    L     + + +             F    +   
Sbjct: 233 LVTPEIISDDGDYE------KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 624 PQGSVEKKILEIFEFTTKNIA 644
            +       ++     TK  A
Sbjct: 287 KEVYTVSYDVDGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.5 bits (211), Expect = 2e-17
 Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 36/269 (13%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           +F      +L+  +    +T     +   +++ +  ++S   I  +Q I    P++  L 
Sbjct: 19  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS--DIKSVQGIQY-LPNVTKLF 71

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           ++G   N +   +   + K+L  L +   +I  + S L    + +  LK LSL  +    
Sbjct: 72  LNG---NKLTDIKPLTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEHN---- 119

Query: 123 NSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
               I D  GL  L  L+ LY+ NN +       L+  T L  L +  NQ++      PL
Sbjct: 120 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 171

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LT ++ L LS NH      L  L     L + +  + E   +       +      ++
Sbjct: 172 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPIN--HQSNLVVPNTV 226

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSH 270
             +     S+  P+ +    + ++  +  
Sbjct: 227 KNTDG---SLVTPEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 6e-15
 Identities = 46/308 (14%), Positives = 96/308 (31%), Gaps = 76/308 (24%)

Query: 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
           + E    +  ++   P            ++    +T    +     L SI+++  +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 198 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 257
           +   S++ +     +       N++  +I    +L     L  L L  N           
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKLT-DIKPLTNLK---NLGWLFLDEN----------- 97

Query: 258 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL-PIHSHKRLRFLD 316
                        IK +       L++  KL+ L L ++ ++    +  +    +L  L 
Sbjct: 98  ------------KIKDLSS-----LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLY 137

Query: 317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 376
           + NN         I DI                   +    +  L  L L +N+++ +I 
Sbjct: 138 LGNNK--------ITDI-------------------TVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 377 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436
                    L+ L LS N +       +  L+NL  L L     + +     S       
Sbjct: 170 PL--AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 437 LYLNNNNL 444
           +   + +L
Sbjct: 226 VKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 4e-14
 Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 51  IGSIFP--SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMP 108
           I  IFP  +         +   V          S++ +    + I  +   +Q     +P
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YLP 65

Query: 109 SLKYLSLSGSTLGTNSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
           ++  L L+G       +++ D + L  L +L  L++D N ++  L   L +   L+ L +
Sbjct: 66  NVTKLFLNG-------NKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
             N ++     + LVHL  +E L L NN  +I   +  L   +KL     ++N+I+ +I 
Sbjct: 117 EHNGIS---DINGLVHLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 287
               LT   +L++L LS N+   ++  + L     L   EL   +     P     N   
Sbjct: 170 PLAGLT---KLQNLYLSKNH---ISDLRALAGLKNLDVLELFSQE-CLNKPINHQSNLVV 222

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 328
              +   + SL  P    I         +V  +  +    V
Sbjct: 223 PNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 65/334 (19%)

Query: 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
           +      +  +    P             + K  +   +      L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 552
            S+    Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 553 QLSHLNLAHNN---LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 605
           +L  L+L HN    + G     L  L QL+ L L +N +  +  +         TL    
Sbjct: 110 KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
           N                        +I +I                L+ L  L LS N +
Sbjct: 163 N------------------------QISDIVPLAG-----------LTKLQNLYLSKNHI 187

Query: 666 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725
              +   +  L  +  L L             SNL    ++  +   L    P  + D  
Sbjct: 188 S-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 243

Query: 726 TLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 759
                 V ++            +           
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 60/293 (20%), Positives = 92/293 (31%), Gaps = 83/293 (28%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           +IP +L    S K L L+ N L   +                           F     L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLG-----------------------SYSFFSFPEL 54

Query: 483 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           Q+LD+S   I  ++    +  L  +  + L+ N +   L  G F   SSL  L      L
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 541 NGSIPDWI-DGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
             S+ ++    L  L  LN+AHN +   ++P     L  L+ LDLS N +  +  +    
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
                                                              ++  L   L
Sbjct: 172 LH-------------------------------------------------QMPLLNLSL 182

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           DLS N +   I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 183 DLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 9/193 (4%)

Query: 352 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNL 410
             SF +   LQ LDLS  ++   I D       +L  L L+ N ++  +    FS L +L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLE 469
           + L+    +        +    +LK L + +N + S K+P +  NL  L+H+ +  N ++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 470 GPIPVEFCRLDSLQI----LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF 525
                +   L  + +    LD+S N ++   P  F  + +K++ L  N L   + +G F 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFD 221

Query: 526 NCSSLVTLDLSYN 538
             +SL  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 55/267 (20%), Positives = 88/267 (32%), Gaps = 69/267 (25%)

Query: 351 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 409
           +P S       + LDLS N L   +  +       L+ L LS   ++  I    +  L +
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 410 LRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 468
           L  L+L GN  +  +     S  SSL+ L     NL+  +                    
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE------------------- 116

Query: 469 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 528
                     L +L+ L+++ N I  S                            F N +
Sbjct: 117 ----NFPIGHLKTLKELNVAHNLIQ-SFKL----------------------PEYFSNLT 149

Query: 529 SLVTLDLSYNYLNGSIPDWI-DGLSQL----SHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
           +L  LDLS N +  SI       L Q+      L+L+ N +   +     +  +L+ L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 584 SDNNLHGLIPSCFDN----TTLHESYN 606
             N L  +    FD       +    N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 54/243 (22%), Positives = 77/243 (31%), Gaps = 62/243 (25%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS L L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 620
            N ++         L+ LQ L   + NL  L      +                      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---------------------- 122

Query: 621 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRI 679
                                          L  L  L+++ N +     P+   NLT +
Sbjct: 123 -------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 680 QTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735
           + L+LS N +          L  +     SLDLS N ++  I         L    +  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 736 NLS 738
            L 
Sbjct: 211 QLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 26/202 (12%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQE--LHNFTNLEYLTLDDSSLHISLLQSIGS-IF---P 56
           SFP L  L L        + T ++    + ++L  L L       + +QS+    F    
Sbjct: 50  SFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLS 100

Query: 57  SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ESMPSLKYLS 114
           SL+ L      +  + +     H K+L+ L++    I       ++     ++ +L++L 
Sbjct: 101 SLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLI----QSFKLPEYFSNLTNLEHLD 155

Query: 115 LSGSTLGTNSSRILDQGLCPLAHLQ-ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 173
           LS + + +     L   L  +  L   L +  N +   +         L+ L +  NQL 
Sbjct: 156 LSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

Query: 174 GSISSSPLVHLTSIEELRLSNN 195
            S+       LTS++++ L  N
Sbjct: 214 -SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 73/252 (28%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 164
           S P L+ L LS   + T            L+HL  L +  N ++ SL     +  +SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 165 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 224
           L      L  S+ + P+ HL +++EL +++N  +   S +        + F         
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ---SFK------LPEYFS-------- 146

Query: 225 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 284
                 +LT    L+ L LSSN                        I+ I       L  
Sbjct: 147 ------NLT---NLEHLDLSSN-----------------------KIQSI---YCTDLRV 171

Query: 285 NTKLEF----LYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 336
             ++      L L  + +     G F+       RL+ L +  N  +  +P  I D L S
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 337 LVYFNISMNALD 348
           L    +  N  D
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 77  FPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGL 132
           F  F  L+ LD       L+   +Q I +    S+  L  L L+G+ + + +        
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-- 98

Query: 133 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 192
             L+ LQ+L     +L     + + +  +L+ L+V+ N +          +LT++E L L
Sbjct: 99  --LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 193 SNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINESHSLTP----KFQLKSLSLSSN 246
           S+N  +   S+         L      N  ++  +N  + + P    + +LK L+L +N
Sbjct: 157 SSNKIQ---SIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 12/234 (5%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
              L     KL   I         +LE + +S N +   I + +FS L  L  + +E  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 420 FVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFC 477
            +  I  ++     +L+ L ++N  +         +      + +  N ++       F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 478 RL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
            L     IL ++ N I     S F    + +++LS N    +L    F   S  V LD+S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 537 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
              ++ S+P +  + L +L   +    NL+ ++P  L +L  L    L+    H
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 23/249 (9%)

Query: 473 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 532
               C   S ++    ++ ++  +PS   P +  ++      L   +++G F     L  
Sbjct: 3   HHRICHC-SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEK 58

Query: 533 LDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHG 590
           +++S N +   I   +   L +L  + +   N    +  +  + L  LQ L +S+  +  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 591 LIPSCFDN----TTLHESYNNN--SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
           L      +      L    N N  +     F       G         L        +  
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSF------VGLSFESVILWLNKNGIQEIH-N 171

Query: 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
            A+ G    L        N L   +P  +    +    L++S   +         NL+ +
Sbjct: 172 SAFNG--TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 704 ESLDLSYNK 712
            +      K
Sbjct: 229 RARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 36/253 (14%), Positives = 75/253 (29%), Gaps = 33/253 (13%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS-IF---PSLK 59
             +   L          +        F +LE + +  +     +L+ I + +F   P L 
Sbjct: 29  PRNAIELRFVLTKLR-VIQKGA-FSGFGDLEKIEISQN----DVLEVIEADVFSNLPKLH 82

Query: 60  NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG-- 117
            + +        ++ + F +  +L++L +    I        +          L +    
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNI 139

Query: 118 --STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 175
              T+  NS      GL        L+++ N ++         T    +     N L   
Sbjct: 140 NIHTIERNSF----VGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-E 192

Query: 176 ISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 234
           + +      +    L +S      +P     L N  KL+     N +      +  +L  
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLK------KLPTLEK 244

Query: 235 KFQLKSLSLSSNY 247
              L   SL+   
Sbjct: 245 LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 37/288 (12%), Positives = 70/288 (24%), Gaps = 66/288 (22%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
            +  EL      LR       +    L  +++S N +   I +    +L  + E+R+   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
                         + L                  +      L+ L +S+          
Sbjct: 90  --------------NNLLYI------------NPEAFQNLPNLQYLLISNTG-------- 115

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV-NDSL----AGPFRLPIHSHK 310
                             I   P+    ++ +   L +  N ++       F        
Sbjct: 116 ------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSF 154

Query: 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370
               L ++ N  Q  I     +            N L+      F        LD+S  +
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418
           +   +P +       L   S  N          +  L  L    L   
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 30/252 (11%)

Query: 54  IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES----MPS 109
           +  +   L     ++  V+    F  F  LE +++    +      L++I       +P 
Sbjct: 28  LPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV------LEVIEADVFSNLPK 80

Query: 110 LKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 168
           L  + +  +    N+   ++      L +LQ L I N  ++        ++    +LD+ 
Sbjct: 81  LHEIRIEKA----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 169 FNQLTGSISSSPLVHLTS-IEELRLSNNHFR-IPVSLEPLFNHSKL-KIFDAKNNEINGE 225
            N    +I  +  V L+     L L+ N  + I  S    FN ++L ++  + NN +  E
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLE-E 192

Query: 226 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 285
           +              L +S            L +  +L+     ++K +        E  
Sbjct: 193 LPN-DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKL 245

Query: 286 TKLEFLYLVNDS 297
             L    L   S
Sbjct: 246 VALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
                +K+   IP  +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 718 PRQ----LVDLNTLAIFIVAYNNLS 738
                  L  L+ +   I   NNL 
Sbjct: 71  EADVFSNLPKLHEI--RIEKANNLL 93

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 44/290 (15%)

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           L + +      + +      +  ++  +  L      +T  I         NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
           N +     + + +L  +  L L GN    +   +++   S+K L L +  ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
            L  LQ + +  N +    P     L +LQ L I +  +S  L                 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--------------- 168

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573
                       N S L TL    N ++  I   +  L  L  ++L +N +    P+   
Sbjct: 169 ----------LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 574 RLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSIS 622
             + L ++ L++  +        +N    +     + +P  P   S + +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 42/245 (17%), Positives = 99/245 (40%), Gaps = 35/245 (14%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNL 61
           +  +   +    +N    +T T    +   +  L+   + +  I  +Q       +L  L
Sbjct: 17  ALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTGVTTIEGVQY----LNNLIGL 68

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +   ++  +       +   +  L++    +   ++        + S+K L L+ + + 
Sbjct: 69  ELKDNQITDL---APLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDLTSTQIT 120

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
             +       L  L++LQ LY+D N +    P  LA  T+L+ L +   Q++     +PL
Sbjct: 121 DVT------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTPL 169

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
            +L+ +  L+  +N       + PL +   L     KNN+I+ +++   + +    L  +
Sbjct: 170 ANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS-DVSPLANTS---NLFIV 222

Query: 242 SLSSN 246
           +L++ 
Sbjct: 223 TLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 31/222 (13%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
                + TL          +TT + +    NL  L L D+   I+ L  + +    +  L
Sbjct: 38  ADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLELKDN--QITDLAPLKN-LTKITEL 90

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
            +SG  +  V         +S++ LD+   +I   T         + +L+ L L      
Sbjct: 91  ELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTPL-----AGLSNLQVLYLD----- 137

Query: 122 TNSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
              ++I +   L  L +LQ L I N  +    P  LAN + L  L    N+++     SP
Sbjct: 138 --LNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISP 190

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 222
           L  L ++ E+ L NN       + PL N S L I    N  I
Sbjct: 191 LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 91  ARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 149
             I   T+   I    ++ +   ++   S +    +         L  +  L      + 
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVT 54

Query: 150 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 209
            ++   +    +L  L++  NQ+T     +PL +LT I EL LS N  +   ++  +   
Sbjct: 55  -TIE-GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGL 106

Query: 210 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 269
             +K  D  + +I  ++     L+    L+ L L  N    +T    L     L+   + 
Sbjct: 107 QSIKTLDLTSTQIT-DVTPLAGLS---NLQVLYLDLN---QITNISPLAGLTNLQYLSIG 159

Query: 270 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 329
           + + + +     L N +KL  L   ++ ++     P+ S   L  + + NN      P+ 
Sbjct: 160 NAQ-VSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 330 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
                 +L    ++   +         N++    +   +    
Sbjct: 215 ---NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 48/265 (18%), Positives = 99/265 (37%), Gaps = 30/265 (11%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPS 336
             +   +  L      +       +     L  L++ +N         I D+     L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--------ITDLAPLKNLTK 86

Query: 337 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 396
           +    +S N L     S+   +  ++ LDL++ ++T   P        NL+ L L  N +
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI 141

Query: 397 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 456
                S +  L NL++L +         P  L+  S L  L  ++N +S   P  L +L 
Sbjct: 142 TN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLP 195

Query: 457 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 516
            L  + +  N +    P+      +L I+ +++  I  +    FY  ++   ++ K    
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSG 251

Query: 517 GQLKEGTFFNCSSLVTLDLSYNYLN 541
             +   T  +  +  + +L++N  +
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 53/279 (18%)

Query: 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 511
              L     I   K+++   +      LD +  L      ++ ++    Y  ++  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 512 KNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 570
            N    Q+ +     N + +  L+LS N L  ++   I GL  +  L+L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 571 QLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 628
            L  L+ LQ+L L  N +  + P +   N   L                           
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA---------------------- 161

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 688
             ++ ++                LS L  L    NK+   I P + +L  +  ++L +N 
Sbjct: 162 --QVSDLTPLAN-----------LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQ 206

Query: 689 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
           ++   PL  +N  ++  + L+   ++ +      +L   
Sbjct: 207 ISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 31/246 (12%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
           +    +L  L L+ N     +T    L N T +  L L  +   +  + +I     S+K 
Sbjct: 59  VQYLNNLIGLELKDNQ----ITDLAPLKNLTKITELELSGN--PLKNVSAIAG-LQSIKT 111

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L ++  ++  V          +L+ L +   +I  N S L      + +L+YLS+     
Sbjct: 112 LDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIGN--- 160

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
                  L   L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++     SP
Sbjct: 161 --AQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSP 212

Query: 181 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240
           L + +++  + L+N      ++ +P+F ++ L + +      +G      +++      S
Sbjct: 213 LANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKG-PSGAPIAPATISDNGTYAS 267

Query: 241 LSLSSN 246
            +L+ N
Sbjct: 268 PNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 56/278 (20%), Positives = 95/278 (34%), Gaps = 57/278 (20%)

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
               ++   +    +N++  +     +L G+  +      +     V++  L++L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLEL 70

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPD 546
            DN I+  L        I ++ LS N     LK         S+ TLDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 547 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLH 602
            + GLS L  L L  N +    P  L  L  LQ L + +  +  L P    N    TTL 
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662
              N  S           IS                             L  L  + L  
Sbjct: 180 ADDNKIS----------DISPLAS-------------------------LPNLIEVHLKN 204

Query: 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 700
           N++    P  + N + +  + L++  +T       +NL
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 48/309 (15%), Positives = 105/309 (33%), Gaps = 40/309 (12%)

Query: 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465
           +L N   +    ++    +    +    +  L      ++      +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF 525
           N +    P++   L  +  L++S N +  ++ +     SIK + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             S+L  L L  N +    P  + GL+ L +L++ +  +    P+    L++L  L   D
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 586 NNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 643
           N +  + P  S  +   +H   N  S           +S    +    I+ +   T  N 
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQISD----------VSPLANTSNLFIVTLTNQTITNQ 232

Query: 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
              Y   ++                      +   I    +S N    +  LT++    I
Sbjct: 233 PVFYNNNLVVPNVVKGP--------------SGAPIAPATISDNGTYASPNLTWNLTSFI 278

Query: 704 ESLDLSYNK 712
            ++  ++N+
Sbjct: 279 NNVSYTFNQ 287

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 41/262 (15%), Positives = 97/262 (37%), Gaps = 51/262 (19%)

Query: 479 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
           L +   +    +N++ ++        I  +      +   ++       ++L+ L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDN 73

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFD 597
            +   +   +  L++++ L L+ N L+      +  L  ++ LDL+   +  + P +   
Sbjct: 74  QIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 598 N-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656
           N   L+   N                        +I  I                L+ L 
Sbjct: 130 NLQVLYLDLN------------------------QITNISPLAG-----------LTNLQ 154

Query: 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716
            L +   ++   + P + NL+++ TL    N ++   PL  ++L ++  + L  N++S  
Sbjct: 155 YLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDV 210

Query: 717 IPRQLVDLNTLAIFIVAYNNLS 738
            P  L + + L I  +    ++
Sbjct: 211 SP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 586 NNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 643
           N +  L P       T L  S N   +          +S   G    K L++      ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKN----------VSAIAGLQSIKTLDLTSTQITDV 122

Query: 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 703
                   LS L  L L  N++  +I P +  LT +Q L++ +  ++   PL  +NL  +
Sbjct: 123 TPLAG---LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLSKL 175

Query: 704 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738
            +L    NK+S  I   L  L  L    +  N +S
Sbjct: 176 TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 53/243 (21%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
            Q L L    L   IP H      N+  + +S +     + S  F  L  +  + +    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 420 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
            +  I    L +   LK L + N               GL+           P   +   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTKVYS 128

Query: 479 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN-CSSLVTLDLSY 537
            D   IL+I+DN    S+P                          F   C+  +TL L  
Sbjct: 129 TDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKLYN 165

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLHGLIPSC 595
           N    S+  +    ++L  + L  N     +         +   LLD+S  ++  L    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 596 FDN 598
            ++
Sbjct: 225 LEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 34/247 (13%), Positives = 75/247 (30%), Gaps = 45/247 (18%)

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           C     +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 537 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGL--- 591
            +     +       LS+++H+ + +      +     + L  L+ L + +  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 592 --IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649
             + S      L  + N                         +  I     + +      
Sbjct: 124 TKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLC----- 155

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH-IESLD 707
              +    L L  N     +     N T++  + L+ N     I    F  +      LD
Sbjct: 156 ---NETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 708 LSYNKLS 714
           +S   ++
Sbjct: 212 VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 38/241 (15%), Positives = 84/241 (34%), Gaps = 49/241 (20%)

Query: 481 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
           S Q L + + ++       F  L  I ++++S ++   QL+  +F+N S +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 540 LNGSIP-DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNN-LHGLIPSC 595
               I  D +  L  L  L + +  L+   P   ++   +   +L+++DN  +  +  + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 596 FDN-----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649
           F        TL    N  +S     F                                  
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFN--------------------------------- 177

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
              + L  + L+ NK +  I      G  +    L++S  ++T        +L+ + + +
Sbjct: 178 --GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 708 L 708
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 274 IGEFPNWLLENNTKLEFLYL-VNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 328
           +   P+    N   +  +Y+ ++ +L    +  F    ++  ++  +++ N     +I  
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDP 98

Query: 329 EIGDILPSLVYFNISMNALDGSIP--SSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCVN 385
           +    LP L +  I    L    P  +   +      L++++N     IP +     C  
Sbjct: 99  DALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 443
              L L NN     +    F+   L  + L  N ++  I +       S    L ++  +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 444 LSGKIPRWLGNLKGLQ 459
           ++    + L +LK L 
Sbjct: 217 VTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLS 709
           L  ++ + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 710 YNKLSGKIP--RQLVDLNTLAIFIVAYNNLSGKIPE 743
              L    P   ++   +   I  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 31/205 (15%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD----SSLHISLLQSIGSIFPSL 58
           + P+++ +++  +     L +    +N + + ++ + +    + +    L+ +    P L
Sbjct: 53  NLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKEL----PLL 107

Query: 59  KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM-----PSLKYL 113
           K L +    +                 L++       +  ++  I  +           L
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEI------TDNPYMTSIPVNAFQGLCNETLTL 161

Query: 114 SLSGSTLGTNSSRILDQGLCPLAHLQELYI-DNNDLRGSLPWCLAN-TTSLRILDVSFNQ 171
            L       N    +         L  +Y+  N  L            +   +LDVS   
Sbjct: 162 KLYN-----NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 172 LTGSISSSPLVHLTSIEELRLSNNH 196
           +T ++ S  L HL     L   N  
Sbjct: 217 VT-ALPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILD 166
           PS + L L  + L      I       L ++  +Y+  +     L      N + +  ++
Sbjct: 31  PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 167 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 226
           +   +    I    L  L  ++ L + N   ++   L  +++     I +  +N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 227 NES--HSLTPKFQLKSLSLSSN 246
             +    L    +  +L L +N
Sbjct: 147 PVNAFQGLCN--ETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 16/199 (8%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNL 61
           PS  TL L   +     +      N  N+  + +    + +  L+S    F     + ++
Sbjct: 31  PSTQTLKLIETHLRTIPSHA--FSNLPNISRIYVSI-DVTLQQLES--HSFYNLSKVTHI 85

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTL 120
            +        +          L+ L +    +     F  +    S      L ++ +  
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGL---KMFPDLTKVYSTDIFFILEITDNPY 142

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
            T+      QGLC       L + NN    S+     N T L  + ++ N+    I    
Sbjct: 143 MTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 181 LVHLTS-IEELRLSNNHFR 198
              + S    L +S     
Sbjct: 200 FGGVYSGPSLLDVSQTSVT 218

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 80/470 (17%), Positives = 164/470 (34%), Gaps = 56/470 (11%)

Query: 5   PSLNTLHLESNNFTATLTTTQE--LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           P     +L  + +   +    E    ++T LE + L    +    L+ I   F + K L 
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 63  MSGCEVNGVLSGQGFPHF----KSLEHLDMRFARIALNT-SFLQIIGESMPSLKYLSLSG 117
           +S CE     S  G        ++L+ LD+R + +   +  +L    ++  SL  L++S 
Sbjct: 137 LSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

Query: 118 STLGTNSSRILDQGLCPLAH----LQELYIDNNDLRGSLPWCLANTTSLRILDVS--FNQ 171
                 +S +    L  L      L+ L ++       L   L     L  L       +
Sbjct: 194 L-----ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248

Query: 172 LTGSISSSPLVHLTSIEELR-LSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEINES 229
           +   + S   V L+  +ELR LS     +P  L  +++  S+L   +     +     + 
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY--DL 306

Query: 230 HSLTPKF-QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 288
             L  +  +L+ L +     D+           +L+E  +   +     PN  L     L
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG-L 364

Query: 289 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS----- 343
             +                   +L  +            + I    P++  F +      
Sbjct: 365 VSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410

Query: 344 ------MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 397
                 +  LD    +   +   L+ L LS   LT ++ +++      +E LS++     
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDS 469

Query: 398 GHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLS 445
                 +     +LR L +    F  + +  + SK  +++ L++++ ++S
Sbjct: 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 71/448 (15%), Positives = 135/448 (30%), Gaps = 68/448 (15%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNL 61
           S+  L  + L+    T          +F N + L L          L +I +   +LK L
Sbjct: 103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 62  SMSGCEVNGVLSGQGFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 117
            +   +V+ V SG    HF     SL  L++      ++ S L+ +    P+LK L L+ 
Sbjct: 162 DLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 118 STLGTNSSRILDQGLCPLAHLQELY------IDNNDLRGSLPWCLANTTSLRILDVSFNQ 171
           +      + +L +   P   L+EL           D+   L   L+    LR L   F  
Sbjct: 221 AVPLEKLATLLQR--AP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWD 275

Query: 172 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 231
              +   +     + +  L LS         L  L                         
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCP-------------------- 314

Query: 232 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW---------LL 282
                +L+ L +     D+           +L+E  +   +     PN          + 
Sbjct: 315 -----KLQRLWVLDYIEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

Query: 283 ENNTKLEFL--YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDI----- 333
               KLE +  +    + A        +   +    +     +   ++ +E  DI     
Sbjct: 369 MGCPKLESVLYFCRQMTNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 334 ---LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 390
                 L   ++S    D            ++ L ++    +     H+   C +L  L 
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487

Query: 391 LSN-NSLKGHIFSRIFSLRNLRWLLLEG 417
           + +       + +    L  +R L +  
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.6 bits (165), Expect = 9e-12
 Identities = 78/510 (15%), Positives = 163/510 (31%), Gaps = 72/510 (14%)

Query: 28  HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE----VNGVLSGQG------- 76
           +         +   + +     ++   FP ++++ + G       N V  G G       
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 77  ---FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 133
                 +  LE + ++   +      L++I +S  + K L LS              GL 
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV--TDDCLELIAKSFKNFKVLVLSS------CEGFSTDGLA 149

Query: 134 PLA----HLQELYIDNNDLRGSLPWCLA----NTTSLRILDVSFNQLTGSISSSPLVHL- 184
            +A    +L+EL +  +D+       L+      TSL  L++S   L   +S S L  L 
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALERLV 207

Query: 185 ---TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF----Q 237
               +++ L+L+     +      L    +L+             +    L+       +
Sbjct: 208 TRCPNLKSLKLNRA-VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 238 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND- 296
           L+ LS   +   +   P        L    LS+  +       LL    KL+ L++++  
Sbjct: 267 LRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 297 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 356
             AG   L       LR L V  +           +         ++    +  + S   
Sbjct: 326 EDAGLEVLASTCKD-LRELRVFPS-----------EPFVMEPNVALT----EQGLVSVSM 369

Query: 357 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-----------IFSRIF 405
               L+ +     ++T      +A    N+    L     K               + + 
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQHIVMP 464
             ++LR L L G           +    ++ L +     S   +   L     L+ + + 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 465 K-NHLEGPIPVEFCRLDSLQILDISDNNIS 493
                +  +     +L++++ L +S  ++S
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 59/451 (13%), Positives = 126/451 (27%), Gaps = 76/451 (16%)

Query: 330 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389
             D       +   +     ++ SS+     L+ + L    +T +  + +A    N + L
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVL 135

Query: 390 SLSN-NSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS------------------ 429
            LS+         + I +  RNL+ L L  +         LS                  
Sbjct: 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 430 -------------KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM------PKNHLEG 470
                        +C +LK L LN      K+   L     L+ +         +  +  
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 471 PIPVEFCRLDSLQIL----DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 526
            + V       L+ L    D     +      C     +  ++LS   +           
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP---------IQLCR-LN 576
           C  L  L +     +  +         L  L +  +      P         + +     
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 577 QLQLL-----DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK--TSFSISG-PQGSV 628
           +L+ +      +++  L  +  +  + T          +PD               +   
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNL 684
           + + L +    T +  + Y G     +  L ++        + H+   +     ++ L +
Sbjct: 433 DLRRLSLSGLLT-DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEI 488

Query: 685 SH-NNLTGTIPLTFSNLRHIESLDLSYNKLS 714
                    +    S L  + SL +S   +S
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 39/279 (13%), Positives = 79/279 (28%), Gaps = 29/279 (10%)

Query: 354 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 413
           S+  +       +         P  +      +  + L             F+  NL   
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG--------KPHFADFNL-VP 86

Query: 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVMPKNHL--EG 470
              G +    I    S  + L+ + L    ++      +  + K  + +V+         
Sbjct: 87  DGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146

Query: 471 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK---NMLHGQLKEGTFF-- 525
            +        +L+ LD+ ++++                 L     + L  ++        
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206

Query: 526 --NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE------VPIQLCRLNQ 577
              C +L +L L+       +   +    QL  L       E        + + L    +
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 578 LQLL----DLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 612
           L+ L    D     L  +   C   TTL+ SY    S D
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 345
                L+L  + L       +  + RL  L++        + V     LP L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 346 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIF 401
            L  S+P     +  L  LD+S N+LT  +P      L      L+ L L  N LK  + 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL----GELQELYLKGNELK-TLP 140

Query: 402 SRIF-SLRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 459
             +      L  L L  N+   E+P  L +   +L  L L  N+L   IP+       L 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 460 HIVMPKN 466
              +  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 49/213 (23%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 354 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRW 412
               V     ++     LT  +P  L     +   L LS N L              L  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY-TFSLATLMPYTRLTQ 59

Query: 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 472
           L L+    + ++         L  L L++N L   +P     L  L  + +  N L   +
Sbjct: 60  LNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115

Query: 473 PVE-FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSS 529
           P+     L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 530 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 562
           L TL L  N L  +IP    G   L    L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 32/222 (14%)

Query: 5   PSLNTLHLESNNFTA----TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
            S   ++ +  N TA        T  LH   N            +       +       
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPKDTTILHLSEN-----------LLYTFSL--ATLMPYTR 56

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L+    +   +   Q       L  LD+   ++      L ++G+++P+L  L +S + L
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVSFNRL 112

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSS 179
            +     L      L  LQELY+  N+L+ +LP   L  T  L  L ++ N LT  + + 
Sbjct: 113 TSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166

Query: 180 PLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNN 220
            L  L +++ L L  N    IP   +  F    L       N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVNLEFL 389
           D+       ++S N L     ++      L  L+L   +LT ++     L      L  L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL----PVLGTL 82

Query: 390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNL 444
            LS+N L+  +     +L  L  L +  N        SL          L+ LYL  N L
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNEL 136

Query: 445 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL 503
               P  L     L+ + +  N+L   +P      L++L  L + +N++       F   
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 504 SIKQVHLSKN 513
            +    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 48/216 (22%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
                L LS N L       +   ++L+ LNL    L  ++ +    L  L  LDLS N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 588 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 642
           L  L P         T L  S+N  +S P                               
Sbjct: 89  LQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--------------------------- 120

Query: 643 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNL 700
                  R L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P    + L
Sbjct: 121 -------RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 701 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
            ++++L L  N L   IP+     + L  F   + N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 481 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYN 538
              IL +S+N +     +   P + + Q++L +     +L +         L TLDLS+N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
            L  S+P     L  L+ L+++ N L       L  L +LQ L L  N L  L P     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 599 TT 600
           T 
Sbjct: 147 TP 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 525 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
            +   S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 584 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 639
               L  L            TL  S+N   S                             
Sbjct: 63  DRAELTKL--QVDGTLPVLGTLDLSHNQLQS----------------------------- 91

Query: 640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFS 698
              +    Q   L  L  LD+S N+L   +P      L  +Q L L  N L    P   +
Sbjct: 92  ---LPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 699 NLRHIESLDLSYNKLSGKIP----RQLVDLNTL 727
               +E L L+ N L+ ++P      L +L+TL
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 49/239 (20%), Positives = 74/239 (30%), Gaps = 69/239 (28%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 195
                L++  N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 196 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 255
             +   SL  L                        +L     L  L +S N         
Sbjct: 88  QLQ---SLPLLG----------------------QTLP---ALTVLDVSFN--------- 110

Query: 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF-RLPIHSHK 310
                       L+ +      P   L    +L+ LYL  + L     G     P     
Sbjct: 111 -----------RLTSL------PLGALRGLGELQELYLKGNELKTLPPGLLTPTP----- 148

Query: 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
           +L  L ++NNN    +P  + + L +L    +  N+L  +IP  F     L F  L  N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
               +  N+   ++      +   +  +  +  +N+ +   +   +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNG 77

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
           N L       + +L+NL WL L+ N  V ++  SL     LK L L +N +S  I   L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
           +L  L+ + +  N +     +   RL  L  L + DN IS  +                 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP--------------- 173

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573
                         + L  L LS N+++  +   + GL  L  L L       +      
Sbjct: 174 ----------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 574 RLNQLQLLDLSDNNL 588
            L     +  +D +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 36/268 (13%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
           +F      +L+  +    +T     +   +++ +  ++S   I  +Q I    P++  L 
Sbjct: 22  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS--DIKSVQGIQY-LPNVTKLF 74

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
           ++G   N +   +   + K+L  L +   ++  + S L    + +  LK LSL  +    
Sbjct: 75  LNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN---- 122

Query: 123 NSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
               I D  GL  L  L+ LY+ NN +       L+  T L  L +  NQ++      PL
Sbjct: 123 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LT ++ L LS NH      L  L     L + +  + E   +     S      L   
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSN-----LVVP 226

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELS 269
           +   N   S+  P+ +    + ++  + 
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 33/222 (14%)

Query: 27  LHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 85
              F       L   S+              S+  +  +  ++  V   QG  +  ++  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNE----LNSIDQIIANNSDIKSV---QGIQYLPNVTK 72

Query: 86  LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD-QGLCPLAHLQELYID 144
           L +   ++  +   L     ++ +L +L L         +++ D   L  L  L+ L ++
Sbjct: 73  LFLNGNKLT-DIKPL----ANLKNLGWLFLD-------ENKVKDLSSLKDLKKLKSLSLE 120

Query: 145 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLE 204
           +N +   +   L +   L  L +  N++T     + L  LT ++ L L +N       + 
Sbjct: 121 HNGIS-DIN-GLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS---DIV 172

Query: 205 PLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 246
           PL   +KL+      N I+ ++     L     L  L L S 
Sbjct: 173 PLAGLTKLQNLYLSKNHIS-DLRALAGLK---NLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 44/305 (14%), Positives = 92/305 (30%), Gaps = 74/305 (24%)

Query: 140 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 199
           E       ++                ++    +T    +     L SI+++  +N+  + 
Sbjct: 6   ETITVPTPIKQIFS--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK- 59

Query: 200 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 259
             S++ +     +       N++  +I    +L     L  L L  N             
Sbjct: 60  --SVQGIQYLPNVTKLFLNGNKLT-DIKPLANLK---NLGWLFLDEN------------- 100

Query: 260 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 319
                      +K +       L++  KL+ L L ++ ++      +    +L  L + N
Sbjct: 101 ----------KVKDLSS-----LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGN 143

Query: 320 NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHL 379
           N         I DI                   +    +  L  L L +N+++ +I    
Sbjct: 144 NK--------ITDI-------------------TVLSRLTKLDTLSLEDNQIS-DIVPL- 174

Query: 380 AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 439
                 L+ L LS N +       +  L+NL  L L     + +     S       +  
Sbjct: 175 -AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 440 NNNNL 444
            + +L
Sbjct: 232 TDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 48/307 (15%), Positives = 92/307 (29%), Gaps = 55/307 (17%)

Query: 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 496
                  +                  + K  +   +      L+S+  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 497 PSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 555
               Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 556 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDK 613
            L+L HN +     +    L QL+ L L +N +  +   S      TL    N       
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN------- 166

Query: 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673
                            +I +I                L+ L  L LS N +   +   +
Sbjct: 167 -----------------QISDIVPLAG-----------LTKLQNLYLSKNHIS-DLRA-L 196

Query: 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733
             L  +  L L             SNL    ++  +   L    P  + D        V 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 734 YNNLSGK 740
           ++     
Sbjct: 255 WHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 47/265 (17%), Positives = 94/265 (35%), Gaps = 38/265 (14%)

Query: 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLV 294
           +    +L      SVT        + + +   ++  IK +       ++    +  L+L 
Sbjct: 25  ETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLN 76

Query: 295 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 349
            + L      P+ + K L +L +  N         + D+     L  L   ++  N +  
Sbjct: 77  GNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKKLKSLSLEHNGI-- 124

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 408
           S  +   ++  L+ L L NNK+T   +   L      L+ LSL +N +       +  L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD--IVPLAGLT 178

Query: 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 468
            L+ L L  NH + ++ ++L+   +L  L L +     K      NL     +      L
Sbjct: 179 KLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 469 EGPIPVEFCRLDSLQILDISDNNIS 493
             P  +        +  ++  +   
Sbjct: 237 VTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 49/290 (16%)

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
               +      L   +++  +      L  +  I+   + ++    +++  L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFL 75

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
           + N ++  +       ++  + L +N +       +  +   L +L L +N ++  I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY-N 606
           +  L QL  L L +N +       L RL +L  L L DN +   I      T L   Y +
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLS 186

Query: 607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 666
            N                       I ++                L  L  L+L   + +
Sbjct: 187 KN----------------------HISDLRALAG-----------LKNLDVLELFSQECL 213

Query: 667 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716
                   NL    T+  +  +L    P   S+    E  ++ ++     
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVE-FCRLD 480
            +PQSL   S    L L++NNLS     W    L  L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 481 SLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
           +L+ LD+S N++  +L    F  L +++ + L  N +   +    F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 539 YLNGSIP----DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL--LDLSDNNLH 589
            ++   P       + L +L  L+L+ N L+      L +L       L L +N L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 481 SLQILDISDNNISGSLPS--CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
              +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS 
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 538 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
           N+L+ ++ +++   L  L  L L +N++          + QLQ L LS N +        
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 597 DN-------TTLHESYNNNSS 610
            +         L  S N    
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 419
              LDLS+N L+    +       NL  L LS+N L   I S  F  + NLR+L L  NH
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE---- 475
                    S   +L+ L L NN++         ++  LQ + + +N +    PVE    
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD 158

Query: 476 FCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLH 516
             +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRIL 165
           + +L  L LS + L   SS         + +L+ L + +N L  +L     ++  +L +L
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVP----VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPV-SLEPLFNHSKLKIFDAKNNEIN 223
            +  N +   +  +    +  +++L LS N   R PV  ++      KL + D  +N++ 
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 224 GEINESHSLTPKFQLKSLSLSSN 246
                     P +    L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 61/215 (28%)

Query: 528 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 585
           S    LDLS+N L+    +W    L+ L  L L+HN+L   +  +    +  L+ LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N+LH L    F +                                               
Sbjct: 98  NHLHTLDEFLFSD----------------------------------------------- 110

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSN---LR 701
                 L  L  L L  N +V  +      ++ ++Q L LS N ++        +   L 
Sbjct: 111 ------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 702 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
            +  LDLS NKL       L  L       +  +N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 48/241 (19%), Positives = 79/241 (32%), Gaps = 68/241 (28%)

Query: 532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHG 590
            L  S   L  ++P  +   S  + L+L+HNNL          RL  L  L LS N+L+ 
Sbjct: 22  ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 591 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 650
           +    F                                                      
Sbjct: 79  ISSEAFVP---------------------------------------------------- 86

Query: 651 VLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 709
            +  L  LDLS N L   +   +  +L  ++ L L +N++       F ++  ++ L LS
Sbjct: 87  -VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 710 YNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFL 762
            N++S + P +       L  L +  ++ N L  K+P    Q       +      NP  
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

Query: 763 C 763
           C
Sbjct: 203 C 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 278 PNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGD 332
             W     T L  L L ++ L    +  F  +P      LR+LD+S+N+    +   +  
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLDLSSNHLH-TLDEFLFS 109

Query: 333 ILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
            L +L    +  N +   +   +F ++  LQ L LS N+++   P               
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV-------------- 153

Query: 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK--GLYLNNNNL 444
                   +      L  L  L L  N         L K  +    GLYL+NN L
Sbjct: 154 -------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
                L LS + L    +   +     L +L  L + +N L            +LR LD+
Sbjct: 39  SYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEI--- 222
           S N L  ++       L ++E L L NNH      ++   F   ++L+      N+I   
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 223 -NGEINESHSLTPKFQLKSLSLSSN 246
               I + + L    +L  L LSSN
Sbjct: 152 PVELIKDGNKLP---KLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 60
                 L L  NN +  L         TNL  L L  +  H++ + S    F   P+L+ 
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN--HLNFISS--EAFVPVPNLRY 92

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 118
           L +S   ++  L    F   ++LE L +    I +    +F     E M  L+ L LS +
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQN 146

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 170
            +      ++      L  L  L + +N L+      L    +     +  +
Sbjct: 147 QISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDA 217
           +   +LD+S N L+   +      LT++  L LS+NH      +    F     L+  D 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 218 KNNEINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 275
            +N ++  ++E     L     L+ L L +N                       HI ++ 
Sbjct: 96  SSNHLH-TLDEFLFSDLQ---ALEVLLLYNN-----------------------HIVVV- 127

Query: 276 EFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 331
                  E+  +L+ LYL  + +        +   +   +L  LD+S+N  +  +P+   
Sbjct: 128 --DRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 332 DILPSLVYFNISMN 345
             LP+ V   + ++
Sbjct: 184 QKLPAWVKNGLYLH 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 55  FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 114
             SL  ++++   V  +    G  +  +++ L +       N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 115 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
           + G  + ++        L  L  L  L I ++    S+   +     +  +D+S+N    
Sbjct: 95  IMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 175 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 225
            I   PL  L  ++ L +  +          + +  KL    A +  I G+
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 361 LQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419
           ++ L ++N   T   P   L     NLE L +    +       +  L +L  L +  + 
Sbjct: 68  IKDLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 479
               I   ++    +  + L+ N     I   L  L  L+ + +  + +     +E    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DF 180

Query: 480 DSLQILDISDNNISG 494
             L  L      I G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 31/182 (17%)

Query: 407 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 466
           + +L ++ L   + V ++   +    ++K L +NN + +   P  +  L  L+ + +   
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 467 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 526
            +          L SL +LDIS +    S+ +                            
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------T 134

Query: 527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586
              + ++DLSYN     I   +  L +L  LN+  + +     I+     +L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

Query: 587 NL 588
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 87/262 (33%)

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
             K   + ++ ++       +   +++SL  + +++ N++           +    +   
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT----------DLT--GIE-- 63

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573
                          ++  L ++  +     P  I GLS L  L +   ++  +    L 
Sbjct: 64  ------------YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 633
            L  L LLD+S +     I +  +                                    
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINT----------------------------------- 134

Query: 634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693
                             L  +  +DLS N  +  I P +  L  +++LN+  + +    
Sbjct: 135 ------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 694 PLTFSNLRHIESLDLSYNKLSG 715
            +   +   +  L      + G
Sbjct: 176 GI--EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 29/190 (15%)

Query: 404 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 463
                  +  L            + ++ +SL  + L N N++      +     ++ + +
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 523
              H     P+    L +L+ L I   +++         LS                   
Sbjct: 74  NNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIP---NLS------------------- 109

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
               +SL  LD+S++  + SI   I+ L +++ ++L++N    ++   L  L +L+ L++
Sbjct: 110 --GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166

Query: 584 SDNNLHGLIP 593
             + +H    
Sbjct: 167 QFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 49/196 (25%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
             SL  + L + N    +T    +    N++ LT+  +++H +    I     +L+ L +
Sbjct: 43  MNSLTYITLANIN----VTDLTGIEYAHNIKDLTI--NNIHATNYNPISG-LSNLERLRI 95

Query: 64  SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 123
            G +V             +L  L                      SL  L +S       
Sbjct: 96  MGKDVTSD-------KIPNLSGL---------------------TSLTLLDIS------- 120

Query: 124 SSRILDQGLCPLAH---LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
            S   D  L  +     +  + +  N     +   L     L+ L++ F+ +        
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRG 176

Query: 181 LVHLTSIEELRLSNNH 196
           +     + +L   +  
Sbjct: 177 IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           LS L  L +    +     P +  LT +  L++SH+    +I    + L  + S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 712 KLSGKIPRQLVDLNTLAIFIVAYNNLS 738
                I   L  L  L    + ++ + 
Sbjct: 147 GAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 47/205 (22%)

Query: 175 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 234
           S ++     + S+  + L+N +      L  +     +K     N       N    L+ 
Sbjct: 34  STANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS- 88

Query: 235 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 294
              L+ L +                  ++   ++ +           L   T L  L + 
Sbjct: 89  --NLERLRIMGK---------------DVTSDKIPN-----------LSGLTSLTLLDIS 120

Query: 295 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 349
           + +        I++  ++  +D+S N         I DI     LP L   NI  + +  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGE 374
                  +   L  L   +  + G+
Sbjct: 174 Y--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           ++ L  + L+    V  +   I     I+ L +++ + T   P+  S L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743
            ++      L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 40/171 (23%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
             ++  L + + +     T    +   +NLE L +    +    + ++  +  SL  L +
Sbjct: 65  AHNIKDLTINNIH----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDI 119

Query: 64  SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 123
           S    +  +          +  L                     P +  + LS +   T+
Sbjct: 120 SHSAHDDSI-------LTKINTL---------------------PKVNSIDLSYNGAITD 151

Query: 124 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
                   L  L  L+ L I  + +       + +   L  L      + G
Sbjct: 152 IM-----PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDN 490
           +  K L L +N LS    +    L  L+ + +  N L+  +P   F  L +L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 491 NISGSLPSCF--YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548
            +  +LP       +++ ++ L +N L   L    F + + L  L L YN L  S+P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 549 -DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
            D L+ L  L L +N L+        +L +L+ L L +N L  +    FD+  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 351 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 409
           IP+        + LDL +NKL+  +P         L  L L++N L+  + + IF  L+N
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 410 LRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
           L  L +  N       Q+L      +  +L  L L+ N L   +P  +            
Sbjct: 87  LETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRV------------ 128

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEG 522
                      F  L  L  L +  N +  SLP   F  L S+K++ L  N L  ++ EG
Sbjct: 129 -----------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

Query: 523 TFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 562
            F   + L TL L  N L   +P+   D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 333 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFL 389
           I       ++  N L      +F  +  L+ L L++NKL      I   L     NLE L
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETL 90

Query: 390 SLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNN 443
            +++N L+  +   +F  L NL  L L+ N       +SL        + L  L L  N 
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNE 144

Query: 444 LSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 502
           L   +P+ +   L  L+ + +  N L+      F +L  L+ L + +N +       F  
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 503 L-SIKQVHLSKN 513
           L  +K + L +N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 53/238 (22%), Positives = 79/238 (33%), Gaps = 61/238 (25%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P   K++ L  N L   L    F   + L  L L+ N L  ++P  I   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 561 HNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 619
            N L+  +PI +  +L  L  L L  N L  L P  FD+                     
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 620 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTR 678
                                           L+ L  L L  N+L   +P  +   LT 
Sbjct: 132 --------------------------------LTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 679 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736
           ++ L L +N L       F  L  +++L L  N+L  ++P    D       +    N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 67/243 (27%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDN 586
           +    LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646
            L  L    FD                                                 
Sbjct: 96  KLQALPIGVFDQ------------------------------------------------ 107

Query: 647 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIE 704
                L  LA L L  N+L   +PP++  +LT++  L+L +N L  ++P   F  L  ++
Sbjct: 108 -----LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 705 SLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNP 760
            L L  N+L  ++P    D L  L    +  N L  ++PE    F +  K        NP
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGA--FDSLEKLKMLQLQENP 216

Query: 761 FLC 763
           + C
Sbjct: 217 WDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 66/240 (27%)

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219
              + LD+  N+L+ S+ S     LT +  L L++N  +   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFK--- 82

Query: 220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 279
                       L     L++L ++ N                        ++ +   P 
Sbjct: 83  -----------ELK---NLETLWVTDN-----------------------KLQAL---PI 102

Query: 280 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 335
            + +    L  L L  + L       F     S  +L +L +  N  Q  +P  + D L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 336 SLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394
           SL    +  N L   +P   F  +  L+ L L NN+L   +P+        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 81/236 (34%)

Query: 135 LAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
           L  L+ LY+++N L+ +LP        +L  L V+ N+L  ++       L ++ ELRL 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 194 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
            N  +   SL P       ++FD              SLT   +L  LSL  N       
Sbjct: 118 RNQLK---SLPP-------RVFD--------------SLT---KLTYLSLGYN------- 143

Query: 254 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 313
                            ++ +   P  + +  T L+ L L                    
Sbjct: 144 ----------------ELQSL---PKGVFDKLTSLKELRL-------------------- 164

Query: 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
                NN  +  +P    D L  L    +  N L      +F ++  L+ L L  N
Sbjct: 165 ----YNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 50/335 (14%), Positives = 96/335 (28%), Gaps = 17/335 (5%)

Query: 406 SLRN-LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
           S     RWLL             +S+  +   +  +     G     L  +     + + 
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524
               +G        L  L    ++D           +  S  Q          +      
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQ-HTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
                L   +LS       +   ++   +L  L   +      + + +  L+ L     +
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
                 L           +   +    +               +  K L +      ++ 
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC----HLE 460

Query: 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
                  L L+  LDLS N+L   +PP +  L  ++ L  S N L   +    +NL  ++
Sbjct: 461 Q------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 705 SLDLSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLS 738
            L L  N+L      + LV    L +  +  N+L 
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 63
             +   L     +   +     EL +   L+ L  ++    ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 64  SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 123
              E   +       +F +L+ +D    R A               LK        L   
Sbjct: 398 LLYEKETLQ------YFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 124 SSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
              +     L  L  +  L + +N LR +LP  LA    L +L  S N L    +   + 
Sbjct: 450 HKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVA 505

Query: 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSL 241
           +L  ++EL L NN  +   +++PL +  +L + + + N +  E      L      + S+
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 34/310 (10%)

Query: 134 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193
            +     +  +   L       L   + +  L +  ++   S+             + L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 194 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF----QLKSLSLSSNYGD 249
           +          P      +        E     +             QL    LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-- 360

Query: 250 SVTFPKFLYHQHELKEAE-------------LSHIKMIGEFPNWL--LENNTKLEFLYLV 294
           S      L    EL+E E             +  +  +      L        ++ +   
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 295 NDSLA-----GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 349
                         +    +  +R L +++ +      +   + L  + + ++S N L  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR- 476

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLR 408
           ++P +   +  L+ L  S+N L   +   +A     L+ L L NN L+       + S  
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 409 NLRWLLLEGN 418
            L  L L+GN
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 49/289 (16%), Positives = 87/289 (30%), Gaps = 48/289 (16%)

Query: 112 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 171
              L  ++L     +   + +   +  Q+  +   D         A    L   ++S  +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 172 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 231
            T  +  S L     ++EL   N        L  +    +         E     +   +
Sbjct: 361 ST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 232 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE---LKEAELSHIKMIGEFPNWLLENNTKL 288
           + P        L S +    +  K  Y       L   +L+ +  + +            
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--------- 464

Query: 289 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 348
                                  +  LD+S+N  +  +P  +   L  L     S NAL+
Sbjct: 465 -----------------------VTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499

Query: 349 GSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSL 396
            ++     N+  LQ L L NN+L        L   C  L  L+L  NSL
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 4e-05
 Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 28/338 (8%)

Query: 16  NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 75
            +   L    E H+     +++ +++ L +   + +         L M       V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 76  GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 135
                +            +LN    Q     + +    S     L  +      +     
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSD-SQKECVLLKDRPECWCRDSATD 348

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR---L 192
             L    +                T L+    S  +L      +    LT I  +R    
Sbjct: 349 EQLFRCELSVEKS-----------TVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 193 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 252
                        L     ++     +      +  S        ++ L L+      +T
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLT 454

Query: 253 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN---DSLAGPFRLPIHSH 309
               L     +   +LSH + +   P  L      LE L   +   +++ G     + + 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVDG-----VANL 507

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
            RL+ L + NN  Q    ++     P LV  N+  N+L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.9 bits (163), Expect = 2e-11
 Identities = 72/486 (14%), Positives = 156/486 (32%), Gaps = 66/486 (13%)

Query: 31  TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC----EVNGVLSGQGF--------- 77
            +     +  +  + +    +   FP+L++L + G       N +    G          
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107

Query: 78  -PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 136
             + + L+ +  R   +  +    ++       L+ L L         S     GL  + 
Sbjct: 108 SNNLRQLKSVHFRRMIV-SDLDLDRLAKARADDLETLKLDK------CSGFTTDGLLSIV 160

Query: 137 ----HLQELYIDNNDLR-GSLPWCLA---NTTSLRILDVSFNQLTGSISSSPLVHL---- 184
                ++ L ++ +        W      + TSL +L+    +    IS   L  +    
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNC 219

Query: 185 TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 244
            S+  +++ +      + L   F  +   + +     +N +I            + L   
Sbjct: 220 RSLVSVKVGDFEI---LELVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 245 SNYGDS-VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND-SLAGPF 302
                     P       ++++ +L +  +  E    L++    LE L   N     G  
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----------LPSLVYFNISMNALD--- 348
            L     K+L+ L +     +  +  E G +              L Y  + ++ +    
Sbjct: 336 VL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 349 -GSIPSSFGNVIFLQFLDLSN-NKLTGEIPDH----LAMCCVNLEFLSLSNNS--LKGHI 400
             SI +   N+   + + L    ++T    D+    L + C  L   +       L    
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454

Query: 401 FSRIFSL-RNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGNLKG 457
            S I     N+RW+LL       E + +    C +L+ L +     S + I   +  L  
Sbjct: 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514

Query: 458 LQHIVM 463
           L+++ +
Sbjct: 515 LRYLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 55/435 (12%), Positives = 124/435 (28%), Gaps = 42/435 (9%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNL 61
           +   L ++H      +             +LE L LD  S      L SI +    +K L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 62  SMSGCEVNGVLSGQGF----PHFKSLEHLDMRFARIA-LNTSFLQIIGESMPSLKYLSLS 116
            M          G+       H  SLE L+      A ++   L+ I  +  SL  + + 
Sbjct: 170 LMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 117 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
              +         +    L       ++ +         +      ++  +  + +  + 
Sbjct: 229 DFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEK--YMNLVFPRKLCRLGLSYMGPNE 284

Query: 177 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN-EINGEINESHSLTPK 235
                     I +L L             +     L++ + +N     G    +      
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK-- 342

Query: 236 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-- 293
            QLK L +                +  + +  L  +           +   +LE++ +  
Sbjct: 343 -QLKRLRIER----GADEQGMEDEEGLVSQRGLIAL----------AQGCQELEYMAVYV 387

Query: 294 --VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE-----IGDILPSLVYFNISMNA 346
             + +         + +    R + +        +P++     +      L  F   +  
Sbjct: 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447

Query: 347 L---DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR 403
               D  +         ++++ L     + E     +  C NL+ L +          + 
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 404 IF-SLRNLRWLLLEG 417
               L +LR+L ++G
Sbjct: 508 AVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.0 bits (140), Expect = 9e-09
 Identities = 50/428 (11%), Positives = 123/428 (28%), Gaps = 49/428 (11%)

Query: 329 EIGDILPSLVYFNIS-MNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVN 385
           EI + L  L   +   M   D  +   +      L+ L L   +  T +    +   C  
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 386 LEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHFVGEIPQSL----SKCSSLKGL 437
           ++ L +  +S        +  L     +L  L      F    P+ L      C SL  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC------RLDSLQILDISDNN 491
            + +  +  ++  +      L+       + +  +P ++       +L  L +  +  N 
Sbjct: 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 492 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 551
           +    P       I+++ L   +L  +        C +L  L+      +  +       
Sbjct: 285 MPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 552 SQLSHLNLAHNNLEGEVPIQLCRLN------------QLQLLDLSDNN-----LHGLIPS 594
            QL  L +     E  +  +   ++            +L+ + +  ++     L  +   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTK--NIAYAYQGRV 651
             +         +             +       +K +    +       ++  +Y G+ 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 652 LSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESL 706
              +  + L         +            +Q L +     +   I    + L  +  L
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 707 DLSYNKLS 714
            +   + S
Sbjct: 519 WVQGYRAS 526

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 49/276 (17%)

Query: 361 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL-----RNLR 411
           +  LDLS N L       +    A    ++  L+LS NSL       +  +      N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 412 WLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHI 461
            L L GN        E+ ++L+    ++  L L  N+ S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 462 VMPKNHLEGPIPVEFCRL-----DSLQILDISDNNI--------SGSLPSCFYPLSIKQV 508
            +  N L      E  ++      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 509 HLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLA 560
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 561 HNNLEGEVPIQ-------LCRLNQLQLLDLSDNNLH 589
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 52/381 (13%), Positives = 108/381 (28%), Gaps = 86/381 (22%)

Query: 105 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLA-----N 158
                +  L LS + L + S+  L Q      A +  L +  N L       L       
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 159 TTSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF-----NH 209
             ++  L++S N L+      +  +      +I  L L  N F    S            
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLP 137

Query: 210 SKLKIFDAKNNEINGE----INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 265
           + +   + + N++  +    + +  +  P   + SL+L  N                L  
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPA-NVNSLNLRGN---------------NLAS 181

Query: 266 AELSHIKMIGEFPNWLLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRFLDV 317
              + +         L      +  L L            LA  F         +  L++
Sbjct: 182 KNCAELAKF------LASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNL 232

Query: 318 SNNNFQGHIPVEIGDIL---PSLVYFNISMNALDG-------SIPSSFGNVIFLQFLDLS 367
             N   G     +  +      L    +  + +         ++ ++F N+  +  +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 368 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
             ++       I + +       +  SL N  L       IF+ ++              
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCL-------IFAQKH------------QT 333

Query: 424 IPQSLSKCSSLKGLYLNNNNL 444
             + L+    L+        L
Sbjct: 334 NIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 54/329 (16%), Positives = 110/329 (33%), Gaps = 91/329 (27%)

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
            S    +  L L+ NNL       L   +   +                    S+  L++
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPA-----------------SVTSLNL 58

Query: 488 SDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDL 535
           S N++           L +   P ++  ++LS N L  +    L +       ++  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 536 SYNYL-NGSIPDWIDGL----SQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSD 585
            +N   + S  ++        + ++ LNL  N+L  +   +L ++       +  L+L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 586 NNL---------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 636
           NNL           L       T+L  S N              + G +     ++  IF
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANL-------------L-GLKSY--AELAYIF 220

Query: 637 EFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGT 692
                +            +  L+L  N L    + ++     +L  +QT+ L ++ +   
Sbjct: 221 SSIPNH------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 693 -------IPLTFSNLRHIESLDLSYNKLS 714
                  +   F N++ I  +D +  ++ 
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 57/360 (15%), Positives = 108/360 (30%), Gaps = 74/360 (20%)

Query: 281 LLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 332
                  +  L L            L   F    ++   +  L++S N+       E+  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 333 ILPS----LVYFNISMNALDGSIPSSFGNVIF-----LQFLDLSNNKLTGE----IPDHL 379
           IL +    +   N+S N L           +      +  LDL  N  + +         
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 380 AMCCVNLEFLSLSNNSLK---GHIFSRIFSLRN--LRWLLLEGNHF----VGEIPQSL-S 429
           +    ++  L+L  N L         +I +     +  L L GN+       E+ + L S
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
             +S+  L L+ N L  K    L        I                  + +  L++  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELA--YIFSSI-----------------PNHVVSLNLCL 234

Query: 490 NNISGS----LPSCFYPL-SIKQVHLSKNMLHGQLKEG------TFFNCSSLVTLDLSYN 538
           N + G     L      L  ++ V+L  +++    KE        F N   ++ +D +  
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ----------LQLLDLSDNNL 588
            ++ S    I  L +         +L  +  I   +             L+    +   L
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 44/326 (13%), Positives = 87/326 (26%), Gaps = 82/326 (25%)

Query: 156 LANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF---- 207
            +    +  LD+S N L       +  +      S+  L LS N      + + L     
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILA 76

Query: 208 -NHSKLKIFDAKNNEINGEINE---SHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHE 262
              + +   +   N ++ + ++          F +  L L  N                 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS------------- 123

Query: 263 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRF 314
                        +           +  L L          D L             +  
Sbjct: 124 ------KSSSEFKQA---FSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNS 171

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           L++  NN       E+   L               SIP+S      +  LDLS N L  +
Sbjct: 172 LNLRGNNLASKNCAELAKFLA--------------SIPAS------VTSLDLSANLLGLK 211

Query: 375 ----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHF------ 420
               +    +    ++  L+L  N L G     +  L    ++L+ + L+ +        
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 421 -VGEIPQSLSKCSSLKGLYLNNNNLS 445
               +  +      +  +  N   + 
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 28/216 (12%)

Query: 6   SLNTLHLESNNFTATLTTTQEL-----HNFTNLEYLTLDDSSLH----ISLLQSIGSIFP 56
           ++  L L  N+F++   ++ E      +   ++  L L  + L       L+Q + +I  
Sbjct: 110 TITVLDLGWNDFSSK--SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 57  SLKNLSMSGCEV--NGVLS-GQGFPHF-KSLEHLDMRFARIALN--TSFLQIIGESMPSL 110
           ++ +L++ G  +         +       S+  LD+    + L        I       +
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC-------LANTTSLR 163
             L+L  + L   S   L      L HLQ +Y+D + ++               N   + 
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 164 ILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNN 195
           ++D +  ++  S    IS+         +   L N 
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 8/191 (4%)

Query: 30  FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 89
              ++++ L +S + +S L  I S    L+NLS+ G  ++            +L  L++ 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLS 150

Query: 90  FARIALNTSFLQIIGESMPSLKYLSLSG-STLGTNSSRILDQGLCPLAHLQELYIDNNDL 148
                 +   LQ +  S   L  L+LS          ++    +     + +L +     
Sbjct: 151 GCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRK 207

Query: 149 R---GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 205
                 L   +    +L  LD+S + +  +        L  ++ L LS  +  IP +L  
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 206 LFNHSKLKIFD 216
           L     LK   
Sbjct: 268 LGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 58/304 (19%), Positives = 101/304 (33%), Gaps = 57/304 (18%)

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
           +          + LD++  N    +   +  +   ++ F    + +D  +   F     +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPF-RV 95

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 421
           Q +DLSN+ +       +   C  L+ LSL    L   I + +    NL  L L G    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 422 GE--IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478
            E  +   LS CS L  L L+   + +          K +Q  V                
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE---------KHVQVAV-----------AHVSE 195

Query: 479 LDSLQILDISDNNISGSLPSCFYPLSIKQV-HLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
             ++  L++S              L    +  L +              C +LV LDLS 
Sbjct: 196 --TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDLSD 231

Query: 538 -NYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDL----SDNNLHGL 591
              L          L+ L HL+L+   ++  E  ++L  +  L+ L +     D  L  L
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

Query: 592 IPSC 595
             + 
Sbjct: 292 KEAL 295

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 280 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN-NNFQGHIPVEIGDILPSLV 338
            +L   +KL+ L L    L+ P    +  +  L  L++S  + F       +      L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 339 YFNIS------MNALDGSIPSSFGNVIFLQFLDLS--NNKLTGEIPDHLAMCCVNLEFLS 390
             N+S         +  ++         +  L+LS     L       L   C NL  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSET---ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 391 LSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNN 441
           LS+   LK   F   F L  L+ L L   + +       L +  +LK L +  
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 57/269 (21%)

Query: 361 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----------GHIFSRIFS 406
           ++ + LS N +  E    + +++A    +LE    S+                +   +  
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 407 LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
              L  + L  N F       +   LSK + L+ LYL+NN L  +    +   + LQ + 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELA 150

Query: 463 MPKNHLEGPIPVEFCRLDSLQILDISDNNI--------SGSLPSCFYPLSIKQVHLSKNM 514
           + K     P          L+ +    N +        + +  S      +  V + +N 
Sbjct: 151 VNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNG 198

Query: 515 LHGQ-----LKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLE 565
           +  +     L EG    C  L  LDL  N        ++   +     L  L L    L 
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 566 GE------VPIQLCRLNQLQLLDLSDNNL 588
                             LQ L L  N +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 93/359 (25%)

Query: 282 LENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 337
           L  +  ++ + L  +++    A      I S K L   + S+  F G +  EI + L  L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNN 394
           +               +      L  + LS+N       + L         LE L L NN
Sbjct: 87  L--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 395 SL-------------KGHIFSRIFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGL 437
            L             +  +  +  +   LR ++   N      + E  ++      L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 438 YLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI---- 492
            +  N +  + I   L   +GL +                     L++LD+ DN      
Sbjct: 193 KMVQNGIRPEGIEHLLL--EGLAY------------------CQELKVLDLQDNTFTHLG 232

Query: 493 ----SGSLPSCFYPLSIKQVHLSKNMLHGQ--------LKEGTFFNCSSLVTLDLSYNYL 540
               + +L S     +++++ L+  +L  +          +        L TL L YN +
Sbjct: 233 SSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTLRLQYNEI 286

Query: 541 NG----SIPDWI-DGLSQLSHLNLAHNNL--EGEVPIQLCRL----NQLQLLDLSDNNL 588
                 ++   I + +  L  L L  N    E +V  ++  +     + +L +L D   
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 31/223 (13%)

Query: 5   PSLNTLHLESNNFTAT--LTTTQELHNFTNLEYLTLDD------------SSLHISLLQS 50
           P L+T+ L  N F  T        L   T LE+L L +             +L    +  
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 51  IGSIFPSLKNLSMSGC--EVNGVLS-GQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-- 105
                P L+++       E   +    + F   + L  + M    I        ++ E  
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-PEGIEHLLLEGL 212

Query: 106 -SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT----- 159
                LK L L  +T     S  L   L    +L+EL +++  L       + +      
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 160 -TSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHF 197
              L+ L + +N++      ++ +     +  +  L L+ N F
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 61/392 (15%), Positives = 114/392 (29%), Gaps = 119/392 (30%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLK-------GHIFSRIFSLRNL 410
           ++   L  + +T E    +        +++ + LS N++            +    L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 411 RWLLLEGNHFVGEIP-------QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 463
            +  +       EIP       Q+L KC  L  + L++N                + ++ 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---------PTAQEPLI- 115

Query: 464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 523
             + L             L+ L + +N +    P     ++          L        
Sbjct: 116 --DFLSKHT--------PLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 524 FFNCSSLVTLDLSYNYL-NGSIPDWIDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL--- 575
             N   L ++    N L NGS+ +W         L  + +  N +  E +   L      
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 576 -NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 634
             +L++LDL DN                                       GS       
Sbjct: 215 CQELKVLDLQDNTF----------------------------------THLGS------- 233

Query: 635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-------VGHIPPQIGNLTRIQTLNLSHN 687
                   +A A   +    L  L L+   L       V     ++ N+  +QTL L +N
Sbjct: 234 ------SALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284

Query: 688 NLT--GTIPLTFS---NLRHIESLDLSYNKLS 714
            +       L       +  +  L+L+ N+ S
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 106/380 (27%)

Query: 156 LANTTSLRILDVSFNQLTG---SISSSPLVHLTSIEELRLSNNHFRIPVSL---EPLFNH 209
           +A   S+    +  + +T        + L+   S++E+ LS N      +    E + + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 210 SKLKIFDAKNNEINGEINE--------SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 261
             L+I +  +       +E          +L    +L ++ LS N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--------- 110

Query: 262 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL-------------AGPFRLPIHS 308
                     + + +F    L  +T LE LYL N+ L                      +
Sbjct: 111 ---------QEPLIDF----LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 309 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 368
              LR +    N  +                 N SM         +F +   L  + +  
Sbjct: 158 APPLRSIICGRNRLE-----------------NGSMKEWA----KTFQSHRLLHTVKMVQ 196

Query: 369 NKLTGE-----IPDHLAMCCVNLEFLSLSNNSL--KG--HIFSRIFSLRNLRWLLLEGNH 419
           N +  E     + + LA C   L+ L L +N+    G   +   + S  NLR L L    
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 420 F----VGEIPQSLSKCS--SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 473
                   +  + SK     L+ L L  N +             ++ +      ++  +P
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLK---TVIDEKMP 303

Query: 474 VEFCRLDSLQILDISDNNIS 493
                   L  L+++ N  S
Sbjct: 304 -------DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 52/276 (18%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIF--- 55
           M  F S+    L+ +  T     +    L    +++ + L  +++     + +       
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 56  PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM---PSLKY 112
             L+    S      V                            L+++ +++   P L  
Sbjct: 60  KDLEIAEFSDIFTGRVKD---------------------EIPEALRLLLQALLKCPKLHT 98

Query: 113 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-------------RGSLPWCLANT 159
           + LS +  G  +   L   L     L+ LY+ NN L               ++     N 
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 160 TSLRILDVSFNQLT--GSIS-SSPLVHLTSIEELRLSNNHFR----IPVSLEPLFNHSKL 212
             LR +    N+L        +        +  +++  N  R      + LE L    +L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 213 KIFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSN 246
           K+ D ++N     G    + +L     L+ L L+  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 28/197 (14%)

Query: 27  LHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 85
                N     L   S+  +   +        ++N +      + + S  G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 86  LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 145
           L +   +I+ + S L    + +  L+ LS++ +       R+ +    P A L  L++DN
Sbjct: 68  LHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 146 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 205
           N+LR +    L +  +L IL +  N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 206 LFNHSKLKIFDAKNNEI 222
           L    K+   D    + 
Sbjct: 168 LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 131 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 190
               LA+  +  +    +   +       + ++  +   + +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 250
            LS+N       L PL + +KL+      N +   +N   S      L  L L +N    
Sbjct: 69  HLSHNQIS---DLSPLKDLTKLEELSVNRNRLK-NLNGIPSAC----LSRLFLDNN---E 117

Query: 251 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 310
           +     L H   L+   + + K +       L   +KLE L L  + +       +   K
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRLK 172

Query: 311 RLRFLDVSNNN 321
           ++ ++D++   
Sbjct: 173 KVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 40/228 (17%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
               +L    +T  +          ++  +  N++++    + +    NL+ L L  N  
Sbjct: 21  AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ- 74

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
           + ++   L   + L+ L +N N L   +   + +   L  + +  N L          L 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLK 128

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           +L+IL I +N +           SI  +                   S L  LDL  N +
Sbjct: 129 NLEILSIRNNKLK----------SIVMLG----------------FLSKLEVLDLHGNEI 162

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
             +    +  L +++ ++L       E       L     +   D   
Sbjct: 163 T-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 364
           P          ++   +    +  +    L  +  FN   + +     +       L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--NLRWLLLEGNHFVG 422
            LS+N+++ ++   L      LE LS++ N L       +  +    L  L L+ N    
Sbjct: 69  HLSHNQIS-DLSP-LKDL-TKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL-- 118

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
               SL    +L+ L + NN L   I   LG L  L+ + +  N +     +   RL  +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKV 174

Query: 483 QILDISDNNIS 493
             +D++     
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 54/245 (22%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
               +   + +++N    + +   +  FTNL+ L L  + +              L  L 
Sbjct: 39  ELSGVQNFNGDNSN----IQSLAGMQFFTNLKELHLSHNQIS------------DLSPLK 82

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
                               LE L +   R+        + G     L  L L  + L  
Sbjct: 83  ----------------DLTKLEELSVNRNRLK------NLNGIPSACLSRLFLDNNELRD 120

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182
                    L  L +L+ L I NN L+ S+   L   + L +LD+  N++T   ++  L 
Sbjct: 121 TD------SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT---NTGGLT 169

Query: 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 242
            L  +  + L+          EP+    +L I +   +  +G     + ++         
Sbjct: 170 RLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGC 224

Query: 243 LSSNY 247
           +    
Sbjct: 225 VLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             S +   +   + +  S+   +   + L  L+L+HN +    P  L  L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 586 NNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
           N L  L        + L    N     D       S+                       
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRDTD-------SLIH--------------------- 126

Query: 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
                  L  L  L +  NKL   I   +G L++++ L+L  N +T T  L  + L+ + 
Sbjct: 127 -------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGL--TRLKKVN 175

Query: 705 SLDLSYNKLS 714
            +DL+  K  
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 48/274 (17%), Positives = 79/274 (28%), Gaps = 58/274 (21%)

Query: 179 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 238
            P   L +  +  L          L      S ++ F+  N+ I   +      T    L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT---NL 65

Query: 239 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298
           K L LS N                    ++S +          L++ TKLE L +  + L
Sbjct: 66  KELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNRL 97

Query: 299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDGSIPS 353
                L       L  L + NN         + D      L +L   +I  N L  SI  
Sbjct: 98  K---NLNGIPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKLK-SI-V 144

Query: 354 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 413
             G +  L+ LDL  N++T             + ++ L+              L     +
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 447
                 ++   P  +S   S     +        
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESY 605
             GL+     NL   ++   V  +   L+ +Q  +  ++N+  L     F N   LH S+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
           N  S           +S  +   + + L +     KN+     G   + L+ L L  N+L
Sbjct: 73  NQIS----------DLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNEL 118

Query: 666 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725
                  + +L  ++ L++ +N L   + L    L  +E LDL  N+++      L  L 
Sbjct: 119 R-DTDS-LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 726 TLAIFIVAYNNLS 738
            +    +      
Sbjct: 173 KVNWIDLTGQKCV 185

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 481
           +    L    +L  LY+ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 516
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 708
                L  L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 709 SYNKLSGKIPRQLVDLNTLAIFIVAYNNL 737
           S+N L   +  + V   +L   +++ N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 130 QGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 188
             L    +L ELYI+N      L    L     LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 189 ELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEIN 223
            L LS N      SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 669 IPPQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
               +     +  L + +      + L     L  + +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 728 AIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 763
           +   +++N L   +   T Q  +  +    GNP  C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 528 SSLVTLDLSYNYLNGSIPDW-IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586
            +L  L +        +    + GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 587 NLHGLIPSCFDNTTLHESY-NNNS 609
            L  L        +L E   + N 
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LR 408
                      L  L + N +    +          L  L++  + L+  +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444
            L  L L  N     +     +  SL+ L L+ N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 165
              +L  L +       +   +  + L  L  L+ L I  + LR   P     T  L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 166 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-------IPVSLEPLFNHSKLKIFDAK 218
           ++SFN L  S+S   +  L S++EL LS N          +    E        +     
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 219 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 253
                  +  +    P  +++  + S + GD V  
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLL 178

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536
           C       L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
            + L    PD      +LS LNL+ N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
           + L  L + N     H+ +     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 370 KLTGEIPDHLAMCCVNLEFLSLSNNSL 396
            L       +    ++L+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 585
                 L  + +         + G   L+ L + +      + ++ L  L +L+ L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 586 NNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFK 616
           + L  + P  F      + L+ S+N   S   K  +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P +I ++ L +N +   +  G F     L  +DLS N ++  +      GL  L+ L L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 610
            N +          L  LQLL L+ N ++ L    F +      L    N   +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNM 514
           KGL  I  P N     +P       ++  + +  N I    P  F P   ++++ LS N 
Sbjct: 21  KGLTEI--PTN-----LPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67

Query: 515 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL- 572
           +  +L    F    SL +L L  N +   +P  + +GL  L  L L  N +   + +   
Sbjct: 68  IS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 573 CRLNQLQLLDLSDNNLHGLIPSCFDN 598
             L+ L LL L DN L  +    F  
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 420
             + L  N +   IP         L  + LSNN +   +    F  LR+L  L+L GN  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRL 479
                       SL+ L LN N ++  +      +L  L  + +  N L+      F  L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 480 DSLQILDISDN 490
            ++Q + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDS 481
           EIP +L    ++  + L  N +    P      K L+ I +  N +   +  + F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 482 LQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 540 LNGSIPDWIDGLSQLSHLNLAHN 562
           L          L  +  ++LA N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 59/187 (31%)

Query: 528 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSD 585
            ++  + L  N +   IP        +L  ++L++N +  E+       L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N +  L  S F+                                                
Sbjct: 90  NKITELPKSLFEG----------------------------------------------- 102

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
                 L  L  L L+ NK+   +      +L  +  L+L  N L      TFS LR I+
Sbjct: 103 ------LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 705 SLDLSYN 711
           ++ L+ N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 164
               L+ + LS + +   +          L  L  L +  N +   LP        SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 165 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 198
           L ++ N++   +       L ++  L L +N  +
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 307 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLD 365
             +K+LR +D+SNN     +  +    L SL    +  N +   +P S F  +  LQ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 366 LSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 420
           L+ NK+   +       L     NL  LSL +N L+  I    F  LR ++ + L  N F
Sbjct: 111 LNANKIN-CLRVDAFQDLH----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTG 373
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  NK+T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 374 EIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSL 428
           E+P    + L     +L+ L L+ N +   +    F  L NL  L L  N        + 
Sbjct: 94  ELPKSLFEGL----FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 429 SKCSSLKGLYLNNN 442
           S   +++ ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 710
           L  L  L L  NK+   +P  +   L  +Q L L+ N +       F +L ++  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 711 NKLS 714
           NKL 
Sbjct: 138 NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 72  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRI 127
           +    F  +K L  +D       L+ + +  +       + SL  L L G+ +      +
Sbjct: 47  IPPGAFSPYKKLRRID-------LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 128 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 187
            +     L  LQ L ++ N +         +  +L +L +  N+L  +I+      L +I
Sbjct: 100 FEG----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 188 EELRLSNNHF 197
           + + L+ N F
Sbjct: 155 QTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 658 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLS 714
           + L  N +   IPP       +++ ++LS+N ++  +    F  LR + SL L  NK++
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 345 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           N +    P  F ++I L+ L L +N+L      + D L      L  L L  N L   + 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTV-LP 104

Query: 402 SRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
           S +F  L +L+ L +  N    E+P+ + + + L  L L+ N L          L  L H
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 461 I 461
            
Sbjct: 164 A 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 483 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 542 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
             +P  + D L  L  L +  N L  E+P  + RL  L  L L  N L  +    FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 523
           N +    P  F  L +L+ L +  N +  +LP   F  L  +  + L  N L   L    
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583
           F     L  L +  N L   +P  I+ L+ L+HL L  N L+        RL+ L    L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 584 SDN 586
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 53/180 (29%), Gaps = 56/180 (31%)

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL 591
           L L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 592 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 651
             + F               D+                                      
Sbjct: 104 PSAVF---------------DR-------------------------------------- 110

Query: 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           L  L  L + CNKL   +P  I  LT +  L L  N L       F  L  +    L  N
Sbjct: 111 LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKN 513
           + L  I  P++     IP           L +++N  +    +  F  L  +++++ S N
Sbjct: 21  QKLNKI--PEH-----IPQ------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN 67

Query: 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL 572
            +   ++EG F   S +  + L+ N L  ++   +  GL  L  L L  N +        
Sbjct: 68  KIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 573 CRLNQLQLLDLSDNNLHGLIPSCFDN 598
             L+ ++LL L DN +  + P  FD 
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P    ++ L+ N        G F     L  ++ S N +   I +   +G S ++ + L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 610
            N LE         L  L+ L L  N +  +    F        L    N  ++
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 420
             L L+NN+ T      +      L  ++ SNN +   I    F     +  +LL  N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
                +      SLK L L +N ++         L  ++ + +  N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 481 SLQILDISDN 490
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           L ++NN F       I   LP L   N S N +      +F     +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 375 IP----DHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427
           +       L     +L+ L L +N    +    F     L ++R L L  N      P +
Sbjct: 96  VQHKMFKGL----ESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGA 148

Query: 428 LSKCSSLKGLYLNNN 442
                SL  L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 437 LYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 495
           L LNNN  +          L  L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 496 LPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLS 552
           +    F  L S+K + L  N +   +   +F   SS+  L L  N +  ++     D L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 553 QLSHLNLAHN 562
            LS LNL  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 423
           D SN KL  +IP+H+         L L+NN       + IF  L  LR +    N     
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 482
              +    S +  + L +N L     +    L+ L+ +++  N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 483 QILDISDNNISGSLPSCFYPL-SIKQVHLSKN 513
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 652 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 710
            S +  + L+ N+L   +  ++   L  ++TL L  N +T     +F  L  +  L L  
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 711 NKLSGKIPR----QLVDLNTLAIF 730
           N+++  +       L  L+TL + 
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 658 LDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
           L L+ N+    +        L +++ +N S+N +T      F     +  + L+ N+L  
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 716 KIP----RQLVDLNTL 727
            +     + L  L TL
Sbjct: 96  -VQHKMFKGLESLKTL 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           L L N K      + L    VNLEFLSL N  L     S +  L  L+ L L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGG 86

Query: 424 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRL 479
           +     K  +L  L L+ N L        L  L+ L+ + +      +L       F  L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 480 DSLQILDISDNNIS 493
             L  LD  D    
Sbjct: 147 PQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 29  NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 88
               +  L LD+   +   ++ + + F +L+ LS+    +  V      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 89  RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 146
              RI      L ++ E +P+L +L+LSG+ L       L+  L  L  L+ L + N   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 147 -DLRGSLPWCLANTTSLRILD 166
            +L             L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 501 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560
            P +++++ L     +    EG      +L  L L    L  S+ + +  L +L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
            N + G + +   +L  L  L+LS N L  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 103 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 162
           +     +L++LSL    L      +    L  L  L++L +  N + G L        +L
Sbjct: 44  LTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP------LFNHSKLKIFD 216
             L++S N+L    +  PL  L  ++ L L N      V+              +L   D
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDYRESVFKLLPQLTYLD 153

Query: 217 AKNNEIN 223
             + E  
Sbjct: 154 GYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
           L FL + N        V     LP L    +S N + G +      +  L  L+LS NKL
Sbjct: 51  LEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 372 T--GEIPDHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWL 413
                + + L      L+ L L N    +L  +  S    L  L +L
Sbjct: 108 KDISTL-EPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           L L    L+  +   +  L +++ L LS N + G + +    L ++  L+LS NKL 
Sbjct: 54  LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 57/187 (30%)

Query: 406 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
           +   +R L+L+      G+I    ++  +L+ L L N  L                    
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------------- 62

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524
              +         +L  L+ L++S+N I G                          +   
Sbjct: 63  --SVSN-----LPKLPKLKKLELSENRIFG------------------------GLDMLA 91

Query: 525 FNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHN---NLEGEVPIQLCRLNQLQ 579
               +L  L+LS N L   I     +  L  L  L+L +    NL          L QL 
Sbjct: 92  EKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

Query: 580 LLDLSDN 586
            LD  D 
Sbjct: 151 YLDGYDR 157

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 353 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
           + + N +  + LDL   K+   I ++L       + +  S+N ++         LR L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 68

Query: 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 466
           LL+  N               L  L L NN+L        L +LK L ++ + +N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 21  LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 80
           +    +  N      L L      I +++++G+       +  S    N +    GFP  
Sbjct: 9   IEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLL 63

Query: 81  KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 140
           + L+ L +   RI       + + +++P L  L L+ ++L       LD  L  L  L  
Sbjct: 64  RRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP-LASLKSLTY 117

Query: 141 LYIDNN---DLRGSLPWCLANTTSLRILD 166
           L I  N   + +    + +     +R+LD
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 105 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 164
            +    + L L G         +++     L     +   +N++R  L         L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 165 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 222
           L V+ N++   I       L  + EL L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 484 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543
           ++ ++   I          +  +++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 544 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
           +  +   L +L  L + +N +          L  L  L L++N+L  L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465
           +    R L L G   +  I    +       +  ++N +  K+      L+ L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNIS 493
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
             N  +   L L    +     L   +  +   +D S+N  +    ++   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 342 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVNLEFLSLSNN---SL 396
           ++ N +          +  L  L L+NN L   G++ D LA    +L +L +  N   + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 397 KGHIFSRIFSLRNLRWL 413
           K +    I+ +  +R L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 708
           G  L     +D S N++          L R++TL +++N +          L  +  L L
Sbjct: 38  GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 709 SYNKLS 714
           + N L 
Sbjct: 96  TNNSLV 101

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 345 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
           N+L       F  +  L  L L  NKL      + + L     +L +L+LS N L+  + 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----TSLTYLNLSTNQLQS-LP 92

Query: 402 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGN 454
           + +F  L  L+ L L  N       QSL      K + LK L L  N L   +P      
Sbjct: 93  NGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 455 LKGLQHIVMPKN 466
           L  LQ+I +  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P     + L  N L   L  G F   +SL  L L  N L  S+P+ + + L+ L++LNL+
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
            N L+        +L QL+ L L+ N L  L    FD  T
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 5e-08
 Identities = 73/478 (15%), Positives = 144/478 (30%), Gaps = 119/478 (24%)

Query: 213 KIFDAKNNEIN----GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 268
           K+    + +I        N   ++    Q     +  N+         +  +    +AEL
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 269 SHIKMIGEFPNWL--LENNTKLEFLYLVNDS-LAGPFRLPIHSHKRLRFLDVSNNNFQGH 325
             +     + N L  L N         V ++     F L        + L  +       
Sbjct: 235 RRLLKSKPYENCLLVLLN---------VQNAKAWNAFNL------SCKILLTTRF----- 274

Query: 326 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 385
              ++ D L +    +IS++    ++       + L++LD     L  E      +   N
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTN 326

Query: 386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS--LKGLYLN--- 440
              LS+   S++  +           W  +  +     I  SL+       + ++     
Sbjct: 327 PRRLSIIAESIRDGL------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 441 -NNNLSGKIPR------WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
              +    IP       W   +K    +V+           +  +  SL  ++      +
Sbjct: 381 FPPSA--HIPTILLSLIWFDVIKSDVMVVV----------NKLHKY-SL--VEKQPKEST 425

Query: 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-----NGSIPDWI 548
            S+PS +  L +K  +     LH  + +               YN       +  IP ++
Sbjct: 426 ISIPSIYLELKVKLENEYA--LHRSIVD--------------HYNIPKTFDSDDLIPPYL 469

Query: 549 DG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF-DNTTLHESY 605
           D    S + H    H  L+     +   L ++  LD             F +    H+S 
Sbjct: 470 DQYFYSHIGH----H--LKNIEHPERMTLFRMVFLDFR-----------FLEQKIRHDST 512

Query: 606 NNNSSPD--------KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655
             N+S          K +K     + P+   E+ +  I +F  K        +   LL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 97/330 (29%)

Query: 533 LDLSYNYLNGSI------PDWIDGLSQLSHLNLAHNNLEGEVPIQLCR---LNQLQ--LL 581
           L ++Y +L   I      P  +     +   +  +N+ +      + R     +L+  LL
Sbjct: 87  LRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 582 DLSDNN---LHGL---------IPSCFDNTTLHE--------SYNNNSSP---------- 611
           +L       + G+         +  C       +        +  N +SP          
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 612 ----DKPFKT----SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL------SLLAG 657
               D  + +    S +I     S++ ++  + +             VL           
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNA 261

Query: 658 LDLSCNKLVGHIPPQIGNLTR-IQTLNLSHNNLTGTIPLTFSN--LRHIESLDLSYNKLS 714
            +LSC  L+          TR  Q  +      T  I L   +  L   E   L    L 
Sbjct: 262 FNLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 715 ---GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICR 771
                +PR+++  N   + I+A       I +  A +  +   + D              
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCD-------------- 353

Query: 772 SLATMSEASTSNEGDDNLIDMDSFFITFTI 801
            L T+ E+S +        +    F   ++
Sbjct: 354 KLTTIIESSLNVLEPA---EYRKMFDRLSV 380

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 420
             L L++N+L     D L     +L  L L  N L G I    F    +++ L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 421 VGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKN 466
                + +S         LK L L +N +S  +    G   +L  L  + +  N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           PL   ++ L+ N L     +G F     LV L+L  N L   I     +G S +  L L 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 561 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 598
            N ++ E+  ++   L+QL+ L+L DN +  ++P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 476 FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 533
           F RL  L  L++  N ++  +    F   S I+++ L +N +  ++    F     L TL
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 534 DLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 562
           +L  N ++  +     + L+ L+ LNLA N
Sbjct: 108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 355 FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 409
           FG +  L  L+L  N+LT  I     +       +++ L L  N +K  I +++F  L  
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGA----SHIQELQLGENKIK-EISNKMFLGLHQ 103

Query: 410 LRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 442
           L+ L L  N  +  +   S    +SL  L L +N
Sbjct: 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 523
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 524 FFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLL 581
           F + + L  L L  N L  S+P  + D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 582 DLSDNNLHGLIPSCFDN 598
            LS N L  +    FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 345 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 401
             L     ++F  +  L +L+L  N+L      + D L      L  L L+NN L   + 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGLANNQLAS-LP 99

Query: 402 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG-- 453
             +F  L  L  L L GN       +SL      + + LK L LN N L   IP   G  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAF 151

Query: 454 -NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 490
             L  LQ + +  N L+      F RL  LQ + +  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 483 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           + LD+    ++    + F  L+ +  ++L  N L   L  G F + + L TL L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 542 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN- 598
            S+P  + D L+QL  L L  N L+  +P  +  RL +L+ L L+ N L  +    FD  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 599 ---TTLHESYNNNSS-PDKPF 615
               TL  S N   S P   F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 51/188 (27%), Positives = 72/188 (38%), Gaps = 41/188 (21%)

Query: 384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLY 438
            + E L L +  L     +    L  L WL L+ N       Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 439 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498
           L NN L+  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQLA-SLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 499 -CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLS 555
             F  L  +K++ L+ N L   +  G F   ++L TL LS N L  S+P    D L +L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182

Query: 556 HLNLAHNN 563
            + L   N
Sbjct: 183 TITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592
           LDL    L         GL++L+ LNL +N L+         L +L  L L++N L  L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 593 PSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 648
              FD+ T    L+   N   S             P G  ++                  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDR------------------ 129

Query: 649 GRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
              L+ L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 130 ---LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 708 LSYN 711
           L  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 31  TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LSGQGFPHFKSLEHLDM 88
            + E L L  + L         + F  L  L+    + N +  LS   F     L  L +
Sbjct: 35  ADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90

Query: 89  RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 148
              ++    S    + + +  L  L L G+ L +  S + D+    L  L+EL ++ N L
Sbjct: 91  ANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQL 143

Query: 149 RGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 197
           + S+P       T+L+ L +S NQL  S+       L  ++ + L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P   +++ L    L   L + TF   + L  L+L YN L  ++   + D L++L  L LA
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYN 606
           +N L          L QL  L L  N L  L    FD       L  + N
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRI 164
            +  L +L+L  + L T S+ + D     L  L  L + NN L  SLP     + T L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111

Query: 165 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 198
           L +  NQL  S+ S     LT ++ELRL+ N  +
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           L L N++      + L      LEFLS  N  L     + +  L  L+ L L  N   G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGG 79

Query: 424 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 466
           +     KC +L  L L+ N +        L  L+ L+ + +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 29  NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 88
             ++++ L LD+S  +   L+ +   F  L+ LS       G+ S    P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 89  RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 146
              R+   +  L+++ E  P+L +L+LSG+ +       ++  L  L +L+ L + N   
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLKSLDLFNCEV 125

Query: 147 -DLRGSLPWCLANTTSLRILD 166
            +L             L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 100 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 159
           L++   +   +K L L  S   +N  ++          L+ L   N  L  S+   L   
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK  D  N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 220 NEI 222
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 406 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464
           +  +++ L+L+ +    G++     +   L+ L   N  L+  I   L  L  L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 465 KNHLEGPIPVEFCRLDSLQILDISDNNIS 493
            N + G + V   +  +L  L++S N I 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 79  HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 138
               ++ L +  +R   N   L+ + +    L++LS     L    + I    L  L  L
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKL 66

Query: 139 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 198
           ++L + +N + G L        +L  L++S N++    +  PL  L +++ L L N    
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--- 123

Query: 199 IPVSLEP 205
             V+   
Sbjct: 124 -EVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 561
           P  +K++ L  +  +    EG       L  L      L  SI + +  L++L  L L+ 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 562 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591
           N + G + +   +   L  L+LS N +  L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
             + L FL   N        +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 368 NNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWL 413
            NK+      + L     NL+ L L N  +      R      L  L +L
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 478 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
             + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDN 586
           N ++G +    +    L+HLNL+ N ++       L +L  L+ LDL + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 658 LDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714
           L      L  + ++P     L +++ L LS N ++G + +      ++  L+LS NK+ 
Sbjct: 47  LSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 526 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584
             S +  L L  +  N G +    D   +L  L+  +  L   +   L +LN+L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 585 DNNLHGLIPSCFDN----TTLHESYNN 607
           DN + G +    +     T L+ S N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK 99

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 3   SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 62
             P+L +L + S     ++       +  NLE L L            +    P      
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-- 248

Query: 63  MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 122
                            F +L+ L +  A        + +  + +P L+ + +S   L  
Sbjct: 249 ---------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 123 NSSRILDQGLCPLAHLQELYIDNNDL 148
             +R+L   +  + HL+ + +  N L
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
            + +N       EG F+        ++S+      +   +D +  L++L +   N     
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 569 PIQLCRLNQLQLL--DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 626
                 L  L+++   L D+ +  ++ S   N      Y                     
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------------- 232

Query: 627 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN---LTRIQTLN 683
                    F+         +       L  L +   +    +         L +++T++
Sbjct: 233 -------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 684 LSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 723
           +S   LT      +      ++H++ +++ YN LS ++ ++L  
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 7e-06
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 25/195 (12%)

Query: 27  LHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEV-NGVLSGQGFPHFKSLE 84
           L     L  L +  ++ L I          P+LK+L +    + + V+         +LE
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-----PNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 85  HLDMRF--------ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 136
            L +            + +         +  P+LK+L +  +        +  +    L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LP 279

Query: 137 HLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGSIS---SSPLVHLTSIEE 189
            L+ + I    L       L   +     L+ +++ +N L+  +       L     + +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSD 339

Query: 190 LRLSNNHFRIPVSLE 204
            +  ++ +  P+  E
Sbjct: 340 SQEYDDDYSYPMITE 354

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 9e-06
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 37/215 (17%)

Query: 243 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 302
           +  N      F    +   + +E E+S I+ +   P  +L+    L  L +         
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKI---KGTNNL 185

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGD-ILPSL----VYFNISMNALDGSIPS---- 353
            +       L+ L++ +      +  +I    LP+L    +Y  +     DG +      
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 354 -SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNL 410
            S      L++L + + +    + +      +   LE + +S   L              
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-------------- 291

Query: 411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 445
                  +     +   + K   LK + +  N LS
Sbjct: 292 ------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 39/299 (13%), Positives = 88/299 (29%), Gaps = 43/299 (14%)

Query: 211 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 270
             K       E   +           ++K  +                    LK+ +L  
Sbjct: 49  AEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPS 108

Query: 271 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 330
           +K I          +       +V +            H    F    +   Q    +E 
Sbjct: 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFA-------HFEGLFWGDIDFEEQEISWIEQ 161

Query: 331 GDILPSLVYF-NISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMC-CVNL 386
            D+ P L     ++   + G+   S G      L+ L++ +  L   + + +      NL
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 387 EFLSLSNNSLKGHIFSRIFSLR---------NLRWLLLEGNHFVGEIPQSLSKC---SSL 434
           E L L            +   R         NL+WL +        + +   +      L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493
           + + ++   L+ +         G + ++   +H++        ++  L+ +++  N +S
Sbjct: 282 ETMDISAGVLTDE---------GARLLL---DHVD--------KIKHLKFINMKYNYLS 320

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 105 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 164
            ++ + K+L+LS + +     +I    L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 165 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 224
           L +S+NQ+    S S +  L ++  L +SNN       ++ L    KL+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 225 EINESHSLT 233
           +  E+++ +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 54/165 (32%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           ++  +LS   + K L L+ NN+          +  L                    +++L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE--------KISSLSG------------------MENL 72

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           +IL +  N I            I               E       +L  L +SYN +  
Sbjct: 73  RILSLGRNLIK----------KI---------------ENLDAVADTLEELWISYNQIA- 106

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDN 586
           S+   I+ L  L  L +++N +     I  L  L++L+ L L+ N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 385 NLEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 443
             E + L         + + + +L+  + L L  N+   +I  SLS   +L+ L L  N 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 444 LSGKIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRLDSLQILDISDNNIS 493
           +  KI         L+ + +  N    L G       +L +L++L +S+N I+
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 351 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 410
           + ++   +   + L LS N +  +I   L+    NL  LSL  N +K  I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLE 469
             L +  N         + K  +L+ LY++NN ++       L  L  L+ +++  N L 
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 470 GPIPVEFC----------RLDSLQILD 486
                             RL +L+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 79  HFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 137
             K+ +HL +    I       +I     M +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 138 LQELYIDNN---DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
           L+EL+I  N    L G     +    +LR+L +S N++T       L  L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 195 N 195
           N
Sbjct: 150 N 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF 405
            +P    N   L  +DLSNN+++  +      ++      L  L LS N L+  I  R F
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNM----TQLLTLILSYNRLRC-IPPRTF 98

Query: 406 -SLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 442
             L++LR L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 99  DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 483 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
             L +  N  +  +P        +  + LS N +   L   +F N + L+TL LSYN L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 542 GSIPDWI-DGLSQLSHLNLAHNNL 564
             IP    DGL  L  L+L  N++
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 718 PRQLVD-LNTLAIFIVAYNNLSGKIPE 743
           P +  D L +L +  +  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 72/245 (29%)

Query: 328 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVN 385
               + L S+     + + +  S+      +  +++L L  NKL  +I     L     N
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISALKEL----TN 86

Query: 386 LEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYL 439
           L +L L+ N L+  + + +F  L NL+ L+L  N       QSL      K ++L  L L
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-----QSLPDGVFDKLTNLTYLNL 140

Query: 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 499
            +N L   +P+ +                       F +L +L  LD+S N +  SLP  
Sbjct: 141 AHNQLQ-SLPKGV-----------------------FDKLTNLTELDLSYNQLQ-SLP-- 173

Query: 500 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 558
                                EG F   + L  L L  N L  S+PD + D L+ L ++ 
Sbjct: 174 ---------------------EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 559 LAHNN 563
           L H+N
Sbjct: 212 L-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 9/174 (5%)

Query: 429 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
                      L   +++  + +    L  +  I+   + ++         L +++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
             N +   + +     ++  + L+ N L   L  G F   ++L  L L  N L  S+PD 
Sbjct: 71  GGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 548 I-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
           + D L+ L++LNLAHN L+        +L  L  LDLS N L  L    FD  T
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 432 SSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
           +S+  +  NN+++     I      L  ++++ +  N L   I      L +L  L ++ 
Sbjct: 41  NSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTG 94

Query: 490 NNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
           N +  SLP+  F  L+ +K++ L +N L   L +G F   ++L  L+L++N L  S+P  
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151

Query: 548 I-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 598
           + D L+ L+ L+L++N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 286 TKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 341
           T L +L L  + L     G F         L+ L +  N  Q  +P  + D L +L Y N
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKL----TNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139

Query: 342 ISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSL 396
           ++ N L  S+P   F  +  L  LDLS N+L   +P    D L      L+ L L  N L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL----TQLKDLRLYQNQL 193

Query: 397 KGHIFSRIF-SLRNLRWLLLEGN 418
           K  +   +F  L +L+++ L  N
Sbjct: 194 KS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 55  FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ESMPSLKY 112
              L ++       + + S QG  +  ++ +L        L  + L  I   + + +L Y
Sbjct: 37  QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------LGGNKLHDISALKELTNLTY 89

Query: 113 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQ 171
           L L+G+ L +  + + D+    L +L+EL +  N L+ SLP       T+L  L+++ NQ
Sbjct: 90  LILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 172 LTGSISSSPLVHLTSIEELRLSNN 195
           L  S+       LT++ EL LS N
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 52/232 (22%)

Query: 495 SLPS-CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553
             P          + +L K  +       T    +S+  +  + + +  S+   I  L  
Sbjct: 12  IFPDDA--FAETIKANLKKKSV---TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNS 609
           + +L L  N L  ++   L  L  L  L L+ N L  L    FD       L    N   
Sbjct: 65  VRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 610 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 669
           S             P G        +F+  T              L  L+L+ N+L   +
Sbjct: 123 SL------------PDG--------VFDKLTN-------------LTYLNLAHNQLQS-L 148

Query: 670 PPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPR 719
           P  +   LT +  L+LS+N L  ++P   F  L  ++ L L  N+L   +P 
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 362 QFLDLSNNKLTGEIP---DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 417
             L+L +NKL        D L      L  LSLS N ++  +   +F  L  L  L L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKL----TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHE 85

Query: 418 NHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKN 466
           N       QSL      K + LK L L+ N L   +P      L  LQ I +  N
Sbjct: 86  NKL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 560
           P S  ++ L  N L   L  G F   + L  L LS N +  S+PD + D L++L+ L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 561 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 598
            N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 85  ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 50/356 (14%), Positives = 91/356 (25%), Gaps = 89/356 (25%)

Query: 105 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANT-TSL 162
           E + SL+ L+L+G  +      ++   L      L E+ + +  L  +    L       
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 163 RILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 218
           R L +  N L       +    L     I  LRLSNN       +  L            
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT-AAGVAVL------------ 175

Query: 219 NNEINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEF 277
                        L     +  LSL     GD                     ++++   
Sbjct: 176 ----------MEGLAGNTSVTHLSLLHTGLGD-------------------EGLELLAA- 205

Query: 278 PNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
               L+ N +L+ L +  +      A         H  L  L +  N         + D+
Sbjct: 206 ---QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
             +                        +         ++           V L  +  + 
Sbjct: 263 GGAAE------------------GGARVVVSLTEGTAVS-------EYWSVILSEVQRNL 297

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC----SSLKGLYLNNNNLS 445
           NS      +R+     L    LE +      P   ++       ++ L     +  
Sbjct: 298 NSWDR---ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 36/253 (14%), Positives = 79/253 (31%), Gaps = 35/253 (13%)

Query: 27  LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHFKS- 82
                 L+ + L    L  + L+++  +F   + L +    +             H +  
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 83  LEHLDMRFARIALNTSFLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 139
           +  L +    +    + + ++ E      S+ +LSL  + LG     +L   L     LQ
Sbjct: 157 ITTLRLSNNPL--TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 140 ELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTG------SISSSPLVHLTSIEE 189
           EL +  N    +    L        SL +L + FN+L+                   +  
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274

Query: 190 LRLSNNHF------------RIPVSLEP--LFNHSKLKIFDAKNNEIN--GEINESHSLT 233
                               R   S +   +  H +L + D +++         ++  L 
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 234 PKFQLKSLSLSSN 246
            + ++++L     
Sbjct: 335 VEGEVRALLEQLG 347

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 27/138 (19%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLA-------HLQELYIDNNDLRGSLPWCLANT- 159
           P L+ ++L+      N   I    L   A       ++++  I        + + LA   
Sbjct: 36  PDLEEVNLN------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 160 ---TSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVS-----LEPLF 207
               +L+ L+V  N ++G    ++  + L   TS+ ELR+ N    +  +        L 
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 208 NHSKLKIFDAKNNEINGE 225
            ++ L  F     +    
Sbjct: 149 KNTTLLKFGYHFTQQGPR 166

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN------NSLKGHIF 401
              +P+   +   +Q +D +++ +     DH+      +E + L          L+  + 
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE-RLS 107

Query: 402 SRIFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNN 441
                 +++  + +     V +    +L    +LK L+L++
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	850
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.1

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.9e-74  Score=683.74  Aligned_cols=670  Identities=30%  Similarity=0.437  Sum_probs=471.4

Q ss_pred             CCCCEEEcCCCCCccc---chhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhh--Hhhh
Q 003084           31 TNLEYLTLDDSSLHIS---LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ--IIGE  105 (850)
Q Consensus        31 ~~L~~L~Ls~n~i~~~---~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~l~~  105 (850)
                      .+++.|+|+++.+.+.   .++++.+ ++.|+.++++.+.+.. .+. .++++++|++|+|  ++|.+.+.++.  .++.
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~~-l~~-~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~~  124 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHING-SVS-GFKCSASLTSLDL--SRNSLSGPVTTLTSLGS  124 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTT-CTTCCEEECTTSCEEE-CCC-CCCCCTTCCEEEC--CSSEEEEEGGGGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccChhHhc-cCcccccCCcCCCcCC-Cch-hhccCCCCCEEEC--CCCcCCCcCCChHHHhC
Confidence            5788888888888776   5667888 8888888888887642 333 6888899999999  88888887777  7777


Q ss_pred             cCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEECCCCcCcCCCCccccc
Q 003084          106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC---LANTTSLRILDVSFNQLTGSISSSPLV  182 (850)
Q Consensus       106 ~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~i~~~i~~~~~~  182 (850)
                       +++|++|++++|.+.+   .++...+.++++|++|++++|++++..+..   +.++++|++|++++|.+++.++   +.
T Consensus       125 -l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~  197 (768)
T 3rgz_A          125 -CSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS  197 (768)
T ss_dssp             -CTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CT
T ss_pred             -CCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cc
Confidence             8899999999988876   455444478889999999999888877776   7888899999999998875433   47


Q ss_pred             CCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCC
Q 003084          183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE  262 (850)
Q Consensus       183 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~  262 (850)
                      .+++|++|++++|.+.+..+.  +.++++|+.|++++|.+.+.....+  ....+|++|++ .++.+.+.+|..  .+++
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L-s~n~l~~~~~~~--~l~~  270 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNI-SSNQFVGPIPPL--PLKS  270 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEEC-CSSCCEESCCCC--CCTT
T ss_pred             cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEEC-CCCcccCccCcc--ccCC
Confidence            888899999999988865553  7788888888888887764433222  23335666666 333444444443  5666


Q ss_pred             ccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEc
Q 003084          263 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI  342 (850)
Q Consensus       263 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  342 (850)
                      |++|++++|.+.+.+|..+...+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++
T Consensus       271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L  350 (768)
T 3rgz_A          271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL  350 (768)
T ss_dssp             CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred             CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence            77777777766666666655445667777777776666666666666777777777776666666665555666777777


Q ss_pred             cCCcCcccCcccccCCC-CCCEEEccCCcCCCCcchHHhh-cCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcC
Q 003084          343 SMNALDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAM-CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF  420 (850)
Q Consensus       343 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  420 (850)
                      ++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. .+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            77766666666666665 6677777776666555554432 145666666666666666666666666666666666666


Q ss_pred             cccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCc
Q 003084          421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF  500 (850)
Q Consensus       421 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  500 (850)
                      .+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|..+
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666665555543


Q ss_pred             C-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-----------------
Q 003084          501 Y-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-----------------  562 (850)
Q Consensus       501 ~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----------------  562 (850)
                      . +++|+.|++++|.+.+.+|. .+..+++|+.|++++|++++.+|..+.....+..+++..+                 
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             hcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            3 44555555555555544444 4455555555555555555555544444333333222211                 


Q ss_pred             -----cCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhh
Q 003084          563 -----NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  637 (850)
Q Consensus       563 -----~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                           .+.+..+..+..++.++.++++.|.+.|..|..+..                                       
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~---------------------------------------  630 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN---------------------------------------  630 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS---------------------------------------
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhc---------------------------------------
Confidence                 011122222223333333344444444444433332                                       


Q ss_pred             hccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC
Q 003084          638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI  717 (850)
Q Consensus       638 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  717 (850)
                                    +++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|..|+.+++|+.|||++|+++|.+
T Consensus       631 --------------l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          631 --------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             --------------SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             --------------cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence                          458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCC
Q 003084          718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA  774 (850)
Q Consensus       718 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~  774 (850)
                      |..+..+++|++||+++|+++|.+|.. +++.++...++.|||.+||.|+..|....
T Consensus       697 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          697 PQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             CGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             ChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            999999999999999999999999995 89999999999999999999988887543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.4e-69  Score=635.42  Aligned_cols=660  Identities=28%  Similarity=0.379  Sum_probs=400.1

Q ss_pred             CCCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchh--hhhccCCCCcEEeCCCCcCCCcccCCcCCC
Q 003084            2 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ--SIGSIFPSLKNLSMSGCEVNGVLSGQGFPH   79 (850)
Q Consensus         2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~   79 (850)
                      +++++|+.++++.+.+...   +..++++++|++|+|++|.+.+..+.  .+++ +++|++|++++|.+.+..+...+.+
T Consensus        74 ~~L~~L~~l~~~~~~~~~l---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~  149 (768)
T 3rgz_A           74 LSLTGLESLFLSNSHINGS---VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLK  149 (768)
T ss_dssp             TTCTTCCEEECTTSCEEEC---CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCC
T ss_pred             hccCcccccCCcCCCcCCC---chhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhcc
Confidence            3445555555555443321   35566666666666666666554444  5566 6666666666666655555433356


Q ss_pred             CCcccEEecccCCcccccchhhH---hhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccc
Q 003084           80 FKSLEHLDMRFARIALNTSFLQI---IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL  156 (850)
Q Consensus        80 l~~L~~L~L~~~~~~~~~~~~~~---l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  156 (850)
                      +++|++|++  ++|.+.+..+..   +.. +++|++|++++|.+.+   .+   .+..+++|++|++++|++.+..|. +
T Consensus       150 l~~L~~L~L--s~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~---~~---~~~~l~~L~~L~Ls~n~l~~~~~~-l  219 (768)
T 3rgz_A          150 LNSLEVLDL--SANSISGANVVGWVLSDG-CGELKHLAISGNKISG---DV---DVSRCVNLEFLDVSSNNFSTGIPF-L  219 (768)
T ss_dssp             CTTCSEEEC--CSSCCEEETHHHHHHTTC-CTTCCEEECCSSEEES---CC---BCTTCTTCCEEECCSSCCCSCCCB-C
T ss_pred             CCCCCEEEC--CCCccCCcCChhhhhhcc-CCCCCEEECCCCcccc---cC---CcccCCcCCEEECcCCcCCCCCcc-c
Confidence            666666666  556665555544   334 6666666666666554   11   225566666666666666655554 6


Q ss_pred             cCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCcc
Q 003084          157 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF  236 (850)
Q Consensus       157 ~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  236 (850)
                      +++++|++|++++|.+++.+|. .+..+++|++|++++|.+.+..+..   .+++|+.|++++|.+.+....... ..+.
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~-~~~~  294 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLS-GACD  294 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSC-TTCT
T ss_pred             ccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHH-hhcC
Confidence            6666666666666666655554 5666666666666666665443322   456666666666665532222111 0113


Q ss_pred             ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCC-CccEE
Q 003084          237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFL  315 (850)
Q Consensus       237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L  315 (850)
                      +|++|++ .++.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|
T Consensus       295 ~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          295 TLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             TCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             cCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence            5556666 333444455555555556666666665555555555445555566666665555555555555554 55566


Q ss_pred             EccCCcCCcCCChhhhhc-CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCC
Q 003084          316 DVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN  394 (850)
Q Consensus       316 ~Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  394 (850)
                      ++++|.+++.+|..+... +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. .+++|++|++++|
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n  452 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN  452 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSS
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCC
Confidence            666555555444443321 34555566665555555555555555566666655555544444433 3555556666555


Q ss_pred             ccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcch
Q 003084          395 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV  474 (850)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  474 (850)
                      .+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++.+.+|.
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            55555555555555555666655555555555555555555666655555555555555555555556555555555555


Q ss_pred             hccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCC
Q 003084          475 EFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ  553 (850)
Q Consensus       475 ~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  553 (850)
                      .+..+++|+.|++++|++.+.+|..+. ...+..+.+....-...+...............+   .+.+..+..+..++.
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~  609 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLST  609 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGG
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc---ccccccchhhhcccc
Confidence            555555555555555555555554332 1111111111100000000000000000000000   233455666777888


Q ss_pred             CCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhh
Q 003084          554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  633 (850)
Q Consensus       554 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (850)
                      ++.+++..|.+.+..|..+..+++|+.|++++|+++|.+|..+..+.                                 
T Consensus       610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~---------------------------------  656 (768)
T 3rgz_A          610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP---------------------------------  656 (768)
T ss_dssp             TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT---------------------------------
T ss_pred             ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc---------------------------------
Confidence            88899999999999999999999999999999999999998887755                                 


Q ss_pred             hhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084          634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  713 (850)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  713 (850)
                                          .|+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..++.+++|+.||+++|++
T Consensus       657 --------------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          657 --------------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             --------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             --------------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence                                899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCc-CcC
Q 003084          714 SGKIPRQLVDLNTLAIFIVAYNN-LSG  739 (850)
Q Consensus       714 ~~~~p~~l~~l~~L~~L~l~~N~-l~~  739 (850)
                      +|.+|.. ..+..+....+.+|+ ++|
T Consensus       717 ~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          717 SGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             EEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             cccCCCc-hhhccCCHHHhcCCchhcC
Confidence            9999975 344555566677886 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-58  Score=542.49  Aligned_cols=599  Identities=23%  Similarity=0.251  Sum_probs=413.2

Q ss_pred             CEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEE
Q 003084           34 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL  113 (850)
Q Consensus        34 ~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L  113 (850)
                      +.++.++++++.. +..+   .+++++|++++|.+.+..+. .|.++++|++|++  ++|.+.+..+..+.. +++|++|
T Consensus         7 ~~~~cs~~~L~~i-p~~~---~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L--s~n~l~~~~~~~~~~-l~~L~~L   78 (680)
T 1ziw_A            7 EVADCSHLKLTQV-PDDL---PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDV--GFNTISKLEPELCQK-LPMLKVL   78 (680)
T ss_dssp             SEEECCSSCCSSC-CSCS---CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEEC--CSSCCCCCCTTHHHH-CTTCCEE
T ss_pred             CeeECCCCCcccc-cccc---CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEEC--CCCccCccCHHHHhc-ccCcCEE
Confidence            5688888887654 4333   47899999999998865543 7899999999999  888888888888888 9999999


Q ss_pred             EccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECc
Q 003084          114 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS  193 (850)
Q Consensus       114 ~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~  193 (850)
                      ++++|.+.+    +++..|.++++|++|++++|++.+..|.+|+++++|++|++++|.+++..+. .+.++++|++|+++
T Consensus        79 ~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           79 NLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLS  153 (680)
T ss_dssp             ECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECC
T ss_pred             ECCCCccCc----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEcc
Confidence            999999875    6766788999999999999999888778899999999999999998854444 78889999999999


Q ss_pred             CCcCcCCCCcccc--cCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCC
Q 003084          194 NNHFRIPVSLEPL--FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI  271 (850)
Q Consensus       194 ~n~~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~  271 (850)
                      +|.+++..+ ..+  ..+++|+.|++++|.+.+                           ..|..+..+++|+.+++.++
T Consensus       154 ~n~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          154 NNKIQALKS-EELDIFANSSLKKLELSSNQIKE---------------------------FSPGCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             SSCCCCBCH-HHHGGGTTCEESEEECTTCCCCC---------------------------BCTTGGGGSSEECEEECTTC
T ss_pred             CCcccccCH-HHhhccccccccEEECCCCcccc---------------------------cChhhhhhhhhhhhhhcccc
Confidence            998875332 222  244666666666665543                           23445556667777777776


Q ss_pred             cccccCchhhh--hcCCCCcEEEccCCcCcCcCccCcCCCCC--ccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084          272 KMIGEFPNWLL--ENNTKLEFLYLVNDSLAGPFRLPIHSHKR--LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL  347 (850)
Q Consensus       272 ~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  347 (850)
                      .+.+.....+.  -..++|+.|++++|.+.+..+..+..++.  |+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus       206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSCCB
T ss_pred             ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCCcc
Confidence            65543322221  13477888888888888777777776654  8888888888874433 3344577888888888888


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCCCc--------chHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084          348 DGSIPSSFGNVIFLQFLDLSNNKLTGEI--------PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH  419 (850)
Q Consensus       348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  419 (850)
                      ++..|..+.++++|++|++++|...+.+        +...+..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            8777778888888888888876544322        11223334445555555554444444444444444444444443


Q ss_pred             Ccc--cCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084          420 FVG--EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP  497 (850)
Q Consensus       420 l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  497 (850)
                      +..  .....+..+                      ..++|+.|++++|++++..+..|..+++|+.|++++|.+.+.++
T Consensus       365 ~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          365 TSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             SCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             hhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            221  111111111                      11345555555555554444555555555555555555543333


Q ss_pred             C-Cc-CCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC--CCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084          498 S-CF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  573 (850)
Q Consensus       498 ~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  573 (850)
                      . .+ .+++|+.|++++|.+.+..+ ..|..+++|+.|++++|.+.  +..|..|.++++|+.|++++|++++..+..+.
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  501 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE  501 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence            1 11 13445555555554433333 37778888999999988876  45778888899999999999999887777888


Q ss_pred             CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084          574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS  653 (850)
Q Consensus       574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  653 (850)
                      ++++|++|++++|++++..+..+.....                                             .....++
T Consensus       502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------------------------------------~~~~~l~  536 (680)
T 1ziw_A          502 GLEKLEILDLQHNNLARLWKHANPGGPI---------------------------------------------YFLKGLS  536 (680)
T ss_dssp             TCTTCCEEECCSSCCGGGGSTTSTTSCC---------------------------------------------CTTTTCT
T ss_pred             cccccCEEeCCCCCccccchhhccCCcc---------------------------------------------hhhcCCC
Confidence            8999999999999887664433221100                                             0001245


Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhh-cCCCCCEEEc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l  732 (850)
                      +|++|+|++|+++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            788999999988865556788889999999999999877777788889999999999999887777777 7888889999


Q ss_pred             cCCcCcCCCC
Q 003084          733 AYNNLSGKIP  742 (850)
Q Consensus       733 ~~N~l~~~~p  742 (850)
                      ++|++.|.++
T Consensus       617 ~~N~~~c~c~  626 (680)
T 1ziw_A          617 RFNPFDCTCE  626 (680)
T ss_dssp             TTCCCCBCCC
T ss_pred             cCCCcccCCc
Confidence            8888888776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.8e-58  Score=541.55  Aligned_cols=598  Identities=20%  Similarity=0.229  Sum_probs=492.6

Q ss_pred             cEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCC
Q 003084           84 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR  163 (850)
Q Consensus        84 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  163 (850)
                      +.+++  +++.++. +|..+   .+++++|++++|.+++    +++..|.++++|++|++++|++.+..|.+|+++++|+
T Consensus         7 ~~~~c--s~~~L~~-ip~~~---~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   76 (680)
T 1ziw_A            7 EVADC--SHLKLTQ-VPDDL---PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK   76 (680)
T ss_dssp             SEEEC--CSSCCSS-CCSCS---CTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC
T ss_pred             CeeEC--CCCCccc-ccccc---CCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC
Confidence            45566  5544432 33332   2578888888888876    5666788888888888888888888888888888888


Q ss_pred             EEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEc
Q 003084          164 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL  243 (850)
Q Consensus       164 ~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  243 (850)
                      +|++++|.++ .+|...|.++++|++|++++|.+.+ .+...+.++++|+.|++++|.+...                  
T Consensus        77 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~------------------  136 (680)
T 1ziw_A           77 VLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST------------------  136 (680)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC------------------
T ss_pred             EEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCccccc------------------
Confidence            8888888887 6777678888888888888888864 3334577788888888877765432                  


Q ss_pred             cCCCCCCcccCccccCCCCccEEEccCCcccccCchhhh-hcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcC
Q 003084          244 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL-ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF  322 (850)
Q Consensus       244 s~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  322 (850)
                               .+..+..+++|++|++++|.+.+..+..+. ..+++|+.|++++|.+.+..+..+..+++|+.++++++.+
T Consensus       137 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          137 ---------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             ---------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred             ---------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence                     344456778888899988888776665542 2568999999999999998888899999999999999887


Q ss_pred             CcCCChhhh--hcCCCCcEEEccCCcCcccCcccccCCCC--CCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc
Q 003084          323 QGHIPVEIG--DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG  398 (850)
Q Consensus       323 ~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  398 (850)
                      .........  ...++|++|++++|.+++..|..+..++.  |++|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus       208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence            532222111  12478999999999999888999988865  999999999998 5555556679999999999999999


Q ss_pred             cccccccCCCCCCeeeccCCcCcc-----cCC----cCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc
Q 003084          399 HIFSRIFSLRNLRWLLLEGNHFVG-----EIP----QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  469 (850)
Q Consensus       399 ~~~~~~~~l~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  469 (850)
                      ..+..+.++++|++|++++|...+     .+|    ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence            999999999999999999875542     222    26888999999999999999988889999999999999999754


Q ss_pred             cC--cchhccC--CCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084          470 GP--IPVEFCR--LDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI  544 (850)
Q Consensus       470 ~~--~~~~~~~--l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  544 (850)
                      ..  ....|..  .++|+.|++++|++.+..+..+. +++|+.|++++|.+.+.++...|.++++|++|++++|++.+..
T Consensus       367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence            22  2333433  36899999999999988887765 7899999999999988888778999999999999999999888


Q ss_pred             CccccCCCCCCEEECcCCcCc--cCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCccccccc
Q 003084          545 PDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSIS  622 (850)
Q Consensus       545 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (850)
                      +..|..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++++.++..|..+.                      
T Consensus       447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~----------------------  504 (680)
T 1ziw_A          447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE----------------------  504 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred             hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc----------------------
Confidence            899999999999999999986  56788999999999999999999988888777654                      


Q ss_pred             CCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC--------ccccCCCCCCEEECcCCcCCccCc
Q 003084          623 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP--------PQIGNLTRIQTLNLSHNNLTGTIP  694 (850)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~  694 (850)
                                                     +|++|++++|++++..+        ..|.++++|+.|+|++|+++.+.+
T Consensus       505 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          505 -------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             -------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence                                           89999999999986522        237899999999999999997666


Q ss_pred             ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcc-ccCCCCccccCCCCCCCCCCC-CCCCC
Q 003084          695 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA-QFATFNKSSYDGNPFLCGLPL-PICRS  772 (850)
Q Consensus       695 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~~n~~~c~~~l-~~c~~  772 (850)
                      ..|+++++|+.|++++|++++..+..|..+++|+.|++++|++++..|..+. .++++..+.+++|||.|+|++ .|...
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~  633 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN  633 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence            7899999999999999999988788889999999999999999998887666 788899999999999999996 55554


Q ss_pred             CC
Q 003084          773 LA  774 (850)
Q Consensus       773 ~~  774 (850)
                      |.
T Consensus       634 ~~  635 (680)
T 1ziw_A          634 WI  635 (680)
T ss_dssp             CS
T ss_pred             HH
Confidence            43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-53  Score=508.77  Aligned_cols=555  Identities=21%  Similarity=0.163  Sum_probs=390.6

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcccccc-CccccCCCCCCEEECCCCcCcCCCCcccccCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCLANTTSLRILDVSFNQLTGSISSSPLVHLT  185 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~  185 (850)
                      .+++++|++++|.+++    +.+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..|. .|.+++
T Consensus        23 p~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~   97 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLF   97 (844)
T ss_dssp             CTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCS
T ss_pred             CCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCc
Confidence            5688888888888865    55567888888888888888554444 77888888888888888888744454 788888


Q ss_pred             CCCeEECcCCcCcCCCC-cccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCcc
Q 003084          186 SIEELRLSNNHFRIPVS-LEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK  264 (850)
Q Consensus       186 ~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~  264 (850)
                      +|++|++++|.+.+..+ ...+.++++|+.|++++|.+.+.                          ..+..+.++++|+
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------------------~~~~~~~~L~~L~  151 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------------------YLHPSFGKLNSLK  151 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------------------CCCGGGGTCSSCC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------------------ccchhHhhCCCCC
Confidence            88888888888875332 23466777777777777765422                          1234567778888


Q ss_pred             EEEccCCcccccCchhhhhcC--CCCcEEEccCCcCcCcCccCcCCCCC------ccEEEccCCcCCcCCChhhhhcC--
Q 003084          265 EAELSHIKMIGEFPNWLLENN--TKLEFLYLVNDSLAGPFRLPIHSHKR------LRFLDVSNNNFQGHIPVEIGDIL--  334 (850)
Q Consensus       265 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~~~~~~~~l--  334 (850)
                      +|++++|.+.+..+..+ ..+  ++|+.|+++.|.+.+..+..+..+++      |+.|++++|.+.+.++..+....  
T Consensus       152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            88888888877766654 344  78888888888888877766666555      88888888887776766655432  


Q ss_pred             CCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhc--CCCCCEEEccCCccCccccccccCCCCCCe
Q 003084          335 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLKGHIFSRIFSLRNLRW  412 (850)
Q Consensus       335 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  412 (850)
                      .+++.+.++.+.....               +..+.+. ......+.+  .++|+.|++++|.+.+..+..|..+++|+.
T Consensus       231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            4566777664432210               1122232 222222222  367888888888888777778888888888


Q ss_pred             eeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcC
Q 003084          413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  492 (850)
Q Consensus       413 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  492 (850)
                      |++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            88888888877777888888888888888888877778888888888888888888877777788888888888888887


Q ss_pred             CCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCch-
Q 003084          493 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPI-  570 (850)
Q Consensus       493 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-  570 (850)
                      ++...    .++|+.+++++|.+. .++.    ...+++.|++++|++++... ..+.++++|+.|++++|++++..+. 
T Consensus       375 ~~i~~----~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          375 TTIHF----IPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CCCSS----CCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             CcccC----CCCcchhccCCCCcc-cccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            64321    567777888887775 3333    24578888888888876432 2355788888888888888755433 


Q ss_pred             hccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhh
Q 003084          571 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR  650 (850)
Q Consensus       571 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (850)
                      .+..+++|+.|++++|.+++..+.......                                                ..
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~------------------------------------------------~~  477 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWDV------------------------------------------------FE  477 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSSC------------------------------------------------SS
T ss_pred             ccccCCccccccCCCCccccccccccchhh------------------------------------------------hc
Confidence            355578888888888888644332111000                                                01


Q ss_pred             hhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084          651 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF  730 (850)
Q Consensus       651 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  730 (850)
                      .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|+.||+++|++++..|..+   .+|+.+
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l  552 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL  552 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence            134788888888888888888888888888888888888877776665  788888888888888877665   467888


Q ss_pred             EccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC-CCCCCCCC
Q 003084          731 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATM  776 (850)
Q Consensus       731 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~-~c~~~~~~  776 (850)
                      ++++|++.|.++.  ..|..+   ....+...|+.+.. .|..+...
T Consensus       553 ~l~~Np~~C~c~~--~~f~~~---~~~~~~~~~~~~~~~~C~~p~~~  594 (844)
T 3j0a_A          553 DITHNKFICECEL--STFINW---LNHTNVTIAGPPADIYCVYPDSF  594 (844)
T ss_dssp             EEEEECCCCSSSC--CSHHHH---HHHTTTTTCCCGGGCCCSSCSSS
T ss_pred             EecCCCccccccc--HHHHHH---HHhcCcccccccccCccCCchhh
Confidence            8888888877653  222221   12234444444433 56655543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-52  Score=480.96  Aligned_cols=517  Identities=21%  Similarity=0.212  Sum_probs=263.7

Q ss_pred             CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCC
Q 003084          109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE  188 (850)
Q Consensus       109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~  188 (850)
                      ++++|++++|.+++    +++..|.++++|++|++++|++.+..|.+|.++++|++|++++|.+++..|. .|.++++|+
T Consensus        34 ~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~  108 (606)
T 3t6q_A           34 STECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALK  108 (606)
T ss_dssp             TCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCC
T ss_pred             cCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhccccccc
Confidence            45555555555543    3334555555555555555555555555555555555555555555422232 455555555


Q ss_pred             eEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEc
Q 003084          189 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL  268 (850)
Q Consensus       189 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l  268 (850)
                      +|++++|.+.+. +...+.++                                                   ++|++|++
T Consensus       109 ~L~L~~n~i~~l-~~~~~~~l---------------------------------------------------~~L~~L~L  136 (606)
T 3t6q_A          109 HLFFIQTGISSI-DFIPLHNQ---------------------------------------------------KTLESLYL  136 (606)
T ss_dssp             EEECTTSCCSCG-GGSCCTTC---------------------------------------------------TTCCEEEC
T ss_pred             EeeccccCcccC-CcchhccC---------------------------------------------------CcccEEEC
Confidence            555555554421 11112233                                                   33333444


Q ss_pred             cCCccccc-CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCcc--EEEccCCcCCcCCChhhhhcCCCCcEEEccCC
Q 003084          269 SHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR--FLDVSNNNFQGHIPVEIGDILPSLVYFNISMN  345 (850)
Q Consensus       269 ~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  345 (850)
                      ++|.+.+. .|..  ..+++|++|++++|.+.+..+..+..+++|+  .|++++|.+.+..| ..+. ..+|++|++++|
T Consensus       137 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~~  212 (606)
T 3t6q_A          137 GSNHISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFD-SAVFQSLNFGGT  212 (606)
T ss_dssp             CSSCCCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT-TTTT-TCEEEEEECTTC
T ss_pred             CCCcccccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh-hHhh-hccccccccCCc
Confidence            44333331 1221  1356666666666666655555555666666  66666666653333 2232 235666666655


Q ss_pred             cCcccCcccccCCCCCCEEEccCCcCC----CCcchHHhhcCC--CCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084          346 ALDGSIPSSFGNVIFLQFLDLSNNKLT----GEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH  419 (850)
Q Consensus       346 ~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  419 (850)
                      .   ..+..+..+..++...+.-..+.    ..++...+.++.  +|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus       213 ~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  289 (606)
T 3t6q_A          213 Q---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH  289 (606)
T ss_dssp             S---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred             h---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence            4   12233333333332222221111    022222222222  45555555555554444445555555555555555


Q ss_pred             CcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCCcCCCCCCC
Q 003084          420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISGSLPS  498 (850)
Q Consensus       420 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~  498 (850)
                      +. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+... 
T Consensus       290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  367 (606)
T 3t6q_A          290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC-  367 (606)
T ss_dssp             CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE-
T ss_pred             cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC-
Confidence            54 344445555555555555555554444445555555555555554443222 224455555555555554443220 


Q ss_pred             CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCch-hccCCCC
Q 003084          499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQ  577 (850)
Q Consensus       499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~  577 (850)
                                          .+. .+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+..+. .+..+++
T Consensus       368 --------------------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          368 --------------------CNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             --------------------STT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             --------------------cch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence                                022 455556666666666666555555566666666666666665544332 2555666


Q ss_pred             CCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCe
Q 003084          578 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG  657 (850)
Q Consensus       578 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  657 (850)
                      |++|++++|.+.+..+..+..++                                                     +|++
T Consensus       427 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~  453 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQLFDGLP-----------------------------------------------------ALQH  453 (606)
T ss_dssp             CCEEECTTCCCBTTCTTTTTTCT-----------------------------------------------------TCCE
T ss_pred             CCEEECCCCccCCcCHHHHhCCC-----------------------------------------------------CCCE
Confidence            66666666666555554444322                                                     5666


Q ss_pred             EEccCCccccC---CCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccC
Q 003084          658 LDLSCNKLVGH---IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY  734 (850)
Q Consensus       658 L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  734 (850)
                      |++++|++++.   .+..+..+++|+.|++++|++++..|..|+.+++|+.|++++|++++..|..+.+++.| .|++++
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            66666665541   22345566666666666666665556666666666666666666666666666666666 666666


Q ss_pred             CcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          735 NNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       735 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      |++++.+|..+..+..+..+.++|||+.|+|+
T Consensus       533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            66665555555555556666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-51  Score=478.31  Aligned_cols=523  Identities=21%  Similarity=0.201  Sum_probs=300.0

Q ss_pred             CCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCC
Q 003084           57 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA  136 (850)
Q Consensus        57 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~  136 (850)
                      .+++|++++|.+++..+. .|.++++|++|++  ++|.+.+..+..+.. +++|++|++++|.+.+    +++..|.+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L--s~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~  105 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDL--TRCQIYWIHEDTFQS-QHRLDTLVLTANPLIF----MAETALSGPK  105 (606)
T ss_dssp             TCCEEECTTCCCSEECTT-TSTTCTTCSEEEC--TTCCCCEECTTTTTT-CTTCCEEECTTCCCSE----ECTTTTSSCT
T ss_pred             cCcEEEccCCccCcCChh-HhccCccceEEEC--CCCccceeChhhccC-ccccCeeeCCCCcccc----cChhhhcccc
Confidence            455555555555533332 4555555555555  555555544555554 5555555555555543    3334555556


Q ss_pred             CCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCcc--E
Q 003084          137 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK--I  214 (850)
Q Consensus       137 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~--~  214 (850)
                      +|++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+.+ .....++.+++|+  .
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLS  183 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEE
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeE
Confidence            6666666666555544555556666666666666555 3221123445666666666665552 2223344555555  5


Q ss_pred             EEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEcc
Q 003084          215 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV  294 (850)
Q Consensus       215 L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~  294 (850)
                      +++++|.+.......+.   ..+|+.|++                         +++..   .+.. +..+..++...+.
T Consensus       184 L~l~~n~l~~~~~~~~~---~~~L~~L~l-------------------------~~~~~---~~~~-~~~l~~~~l~~l~  231 (606)
T 3t6q_A          184 LNLNGNDIAGIEPGAFD---SAVFQSLNF-------------------------GGTQN---LLVI-FKGLKNSTIQSLW  231 (606)
T ss_dssp             EECTTCCCCEECTTTTT---TCEEEEEEC-------------------------TTCSC---HHHH-HHHTTTCEEEEEE
T ss_pred             EecCCCccCccChhHhh---hcccccccc-------------------------CCchh---HHHH-hhhccccchhhee
Confidence            55555555443322211   113444444                         33321   1111 1233333222221


Q ss_pred             CCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCC--CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCC
Q 003084          295 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP--SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT  372 (850)
Q Consensus       295 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  372 (850)
                      ...+.           .+...         .++...+..+.  +|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus       232 ~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          232 LGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence            11111           11111         11222222121  5666667766666655556666667777777777666


Q ss_pred             CCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCc-CCCCCCCCcEEECcCCCCCCCCccc
Q 003084          373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRW  451 (850)
Q Consensus       373 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~  451 (850)
                       .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..   
T Consensus       292 -~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---  366 (606)
T 3t6q_A          292 -ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD---  366 (606)
T ss_dssp             -CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE---
T ss_pred             -CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc---
Confidence             555543 2355666666666666555555555566666666666655533332 2455555555555555544322   


Q ss_pred             ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCc
Q 003084          452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV  531 (850)
Q Consensus       452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  531 (850)
                                         ..+..+..+++|+.|++++|.+.+..+                        ..+..+++|+
T Consensus       367 -------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~  403 (606)
T 3t6q_A          367 -------------------CCNLQLRNLSHLQSLNLSYNEPLSLKT------------------------EAFKECPQLE  403 (606)
T ss_dssp             -------------------ESTTTTTTCTTCCEEECCSCSCEEECT------------------------TTTTTCTTCS
T ss_pred             -------------------CcchhcccCCCCCEEECCCCcCCcCCH------------------------HHhcCCccCC
Confidence                               003444555555555555555432211                        1444555555


Q ss_pred             EEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC---CCCcccCccccccCC
Q 003084          532 TLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI---PSCFDNTTLHESYNN  607 (850)
Q Consensus       532 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~~~~~  607 (850)
                      .|++++|++++..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..   +..+..         
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------  474 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT---------  474 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------
Confidence            55555555554433 23556666666666666666666666666677777777777665421   122222         


Q ss_pred             CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084          608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  687 (850)
                                                                  +++|++|++++|++++..|..|.++++|+.|+|++|
T Consensus       475 --------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          475 --------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             --------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence                                                        347888999999998888899999999999999999


Q ss_pred             cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999 999999999999999999999999999999999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-52  Score=495.63  Aligned_cols=531  Identities=20%  Similarity=0.208  Sum_probs=405.5

Q ss_pred             cEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeE
Q 003084          111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL  190 (850)
Q Consensus       111 ~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L  190 (850)
                      +..+.++++++.    +|.    -.++|++|+|++|.+++..+..|.++++|++|++++|...+.++...|.++++|++|
T Consensus         7 ~~~dcs~~~L~~----vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNLTQ----VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCSSC----CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             eEEEccCCCCCC----CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            467888888876    553    347899999999999998899999999999999999976668866689999999999


Q ss_pred             ECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccC
Q 003084          191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH  270 (850)
Q Consensus       191 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~  270 (850)
                      ++++|.+.+.. ...+.++++|+.|++++|.+.+....                         ..++..+++|++|++++
T Consensus        79 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------~~~~~~L~~L~~L~Ls~  132 (844)
T 3j0a_A           79 DLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLK-------------------------DGYFRNLKALTRLDLSK  132 (844)
T ss_dssp             ECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCST-------------------------TCCCSSCSSCCEEEEES
T ss_pred             ECCCCcCcccC-HhHccCCcccCEeeCcCCCCCccccc-------------------------CccccccCCCCEEECCC
Confidence            99999887433 34567777777777777655421100                         11233444555555555


Q ss_pred             CcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcC--CCCcEEEccCCcCc
Q 003084          271 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALD  348 (850)
Q Consensus       271 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~  348 (850)
                      |.+.+..+..                        .+..+++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+.
T Consensus       133 N~l~~~~~~~------------------------~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          133 NQIRSLYLHP------------------------SFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCCCCCCCCG------------------------GGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSC
T ss_pred             Ccccccccch------------------------hHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccc
Confidence            5544433322                        3445555555555555555433333322 2  45666666666665


Q ss_pred             ccCcccccCCCC------CCEEEccCCcCCCCcchHHhhcC--CCCCEEEccC---------CccCccccccccCC--CC
Q 003084          349 GSIPSSFGNVIF------LQFLDLSNNKLTGEIPDHLAMCC--VNLEFLSLSN---------NSLKGHIFSRIFSL--RN  409 (850)
Q Consensus       349 ~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~---------n~l~~~~~~~~~~l--~~  409 (850)
                      +..|..+..+.+      |++|++++|.+++.++..+....  .+++.+.++.         +.+.......|.++  ++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence            555555444443      66777777766655555444322  4566666552         33444445556554  78


Q ss_pred             CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084          410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD  489 (850)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  489 (850)
                      |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            99999999999988888999999999999999999988888999999999999999999988899999999999999999


Q ss_pred             CcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC
Q 003084          490 NNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV  568 (850)
Q Consensus       490 n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  568 (850)
                      |.+.+..+..+. +++|+.|++++|.+++      +..+++|+.|++++|+++. +|..   ..+++.|++++|++.+..
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLD  417 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSST
T ss_pred             CCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCc
Confidence            999887776665 7899999999999863      3348899999999999984 4433   568999999999998653


Q ss_pred             c-hhccCCCCCCEEeCCCCcCCccCCCC-cccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084          569 P-IQLCRLNQLQLLDLSDNNLHGLIPSC-FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  646 (850)
Q Consensus       569 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (850)
                      . ..+..+++|+.|++++|++++..+.. +..                                                
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------  449 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE------------------------------------------------  449 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCS------------------------------------------------
T ss_pred             hhhhhhcCCccceeeCCCCccccccccccccc------------------------------------------------
Confidence            3 34568999999999999998765432 111                                                


Q ss_pred             chhhhhccCCeEEccCCccc-----cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084          647 YQGRVLSLLAGLDLSCNKLV-----GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL  721 (850)
Q Consensus       647 ~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  721 (850)
                           +++|+.|++++|.++     +..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+
T Consensus       450 -----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  524 (844)
T 3j0a_A          450 -----NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL  524 (844)
T ss_dssp             -----CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred             -----CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence                 248999999999997     4455678999999999999999999999999999999999999999998777766


Q ss_pred             hcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          722 VDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       722 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      .  ++|+.|++++|++++.+|..+   ..+..+.++|||+.|+|++.
T Consensus       525 ~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          525 P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred             h--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence            5  899999999999999998754   56778899999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.5e-51  Score=473.72  Aligned_cols=365  Identities=22%  Similarity=0.196  Sum_probs=240.4

Q ss_pred             EEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc------cCcccccCCC--CC
Q 003084          290 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG------SIPSSFGNVI--FL  361 (850)
Q Consensus       290 ~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L  361 (850)
                      .+++++|.+.+..+..+... +|+.|++++|.+.+......+..++.++.+.+..+.+..      ..+..+..+.  .+
T Consensus       185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  263 (606)
T 3vq2_A          185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI  263 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred             eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence            45555555544433333333 566666666665533333334445666666554433221      1111122221  24


Q ss_pred             CEEEc-cCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECc
Q 003084          362 QFLDL-SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN  440 (850)
Q Consensus       362 ~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  440 (850)
                      +.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus       264 ~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          264 DEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT  336 (606)
T ss_dssp             EEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred             hheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence            45555 44555544544  4446666667766666653 33 566666677777777766 3555 34 66677777777


Q ss_pred             CCCCCCCCcccccCCCCCcEEECCCCccccCc--chhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccc
Q 003084          441 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI--PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ  518 (850)
Q Consensus       441 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  518 (850)
                      +|...+.  ..+..+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+                        
T Consensus       337 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------  390 (606)
T 3vq2_A          337 MNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------  390 (606)
T ss_dssp             SCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------
T ss_pred             CCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc------------------------
Confidence            6644322  24556666777777776666542  5566666666666666665542                        


Q ss_pred             cCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCc-cCCCCc
Q 003084          519 LKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCF  596 (850)
Q Consensus       519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~  596 (850)
                      ++ ..+..+++|+.|++++|++.+..+ ..+.++++|++|++++|.+.+..|..+.++++|++|++++|++++ ..|..+
T Consensus       391 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  469 (606)
T 3vq2_A          391 MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF  469 (606)
T ss_dssp             EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence            22 266777888888888888877666 577788888888888888887778888888888888888888876 356656


Q ss_pred             ccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCC
Q 003084          597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL  676 (850)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  676 (850)
                      ..++                                                     +|++|++++|++++..|..|.++
T Consensus       470 ~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l  496 (606)
T 3vq2_A          470 ANTT-----------------------------------------------------NLTFLDLSKCQLEQISWGVFDTL  496 (606)
T ss_dssp             TTCT-----------------------------------------------------TCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccCC-----------------------------------------------------CCCEEECCCCcCCccChhhhccc
Confidence            5533                                                     78888888888888888888888


Q ss_pred             CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEccCCcCcCCCCC
Q 003084          677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~  743 (850)
                      ++|++|+|++|++++..|..|+.+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus       497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            88888888888888888888888888888888888888 5666688886 588888888888877764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.9e-51  Score=473.43  Aligned_cols=533  Identities=19%  Similarity=0.165  Sum_probs=417.5

Q ss_pred             CcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCe
Q 003084          110 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE  189 (850)
Q Consensus       110 L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~  189 (850)
                      -+.++.+++.++.    +|. .+.  +++++|++++|++.+..+..|.++++|++|++++|.++ .+++..|.++++|++
T Consensus        13 ~~~~~c~~~~l~~----ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKLSK----VPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TTEEECTTSCCSS----CCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred             CCceEccCCCccc----CCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCE
Confidence            3567777777765    443 222  56777777777777776767777777777777777776 444436777777777


Q ss_pred             EECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEcc
Q 003084          190 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS  269 (850)
Q Consensus       190 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~  269 (850)
                      |++++|.+.+..+ ..+.++++|++|++++|.+.                                              
T Consensus        85 L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~----------------------------------------------  117 (606)
T 3vq2_A           85 LILTGNPIQSFSP-GSFSGLTSLENLVAVETKLA----------------------------------------------  117 (606)
T ss_dssp             EECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCC----------------------------------------------
T ss_pred             eECCCCcccccCh-hhcCCcccCCEEEccCCccc----------------------------------------------
Confidence            7777777664222 33455555555555444432                                              


Q ss_pred             CCcccccCchhhhhcCCCCcEEEccCCcCcC-cCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCC----CcEEEccC
Q 003084          270 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS----LVYFNISM  344 (850)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~----L~~L~L~~  344 (850)
                           +..+.. ++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+.. +++    +.++++++
T Consensus       118 -----~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          118 -----SLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSL  190 (606)
T ss_dssp             -----CSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTT
T ss_pred             -----cccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccC
Confidence                 111111 3577889999999999886 45888999999999999999998654543332 333    55899999


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc------cccccccCCC--CCCeeec-
Q 003084          345 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSLR--NLRWLLL-  415 (850)
Q Consensus       345 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~--~L~~L~l-  415 (850)
                      |.+++..+..+... +|++|++++|.+.+......+..+++++.+++..+.+..      ..+..+.++.  .++.+++ 
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence            99997666666555 899999999998755555566779999998886554432      1122222222  4566667 


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  495 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  495 (850)
                      ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus       270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             ccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence            66777777776 8899999999999999974 45 788999999999999999 4666 45 899999999999966544


Q ss_pred             CCCCcCCCcccEEEccCccccccc--CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhc
Q 003084          496 LPSCFYPLSIKQVHLSKNMLHGQL--KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQL  572 (850)
Q Consensus       496 ~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l  572 (850)
                      . ....+++|+.|++++|.+++..  +. .+..+++|+.|++++|.+++ .|..+.++++|+.|++++|++.+..+ ..+
T Consensus       344 ~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          344 F-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             C-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred             h-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence            4 3345889999999999987552  44 78899999999999999985 56889999999999999999998877 688


Q ss_pred             cCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhh
Q 003084          573 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL  652 (850)
Q Consensus       573 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  652 (850)
                      ..+++|++|++++|.+.+..|..+..++                                                    
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------------  448 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLT----------------------------------------------------  448 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCT----------------------------------------------------
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCC----------------------------------------------------
Confidence            9999999999999999988888776644                                                    


Q ss_pred             ccCCeEEccCCcccc-CCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEE
Q 003084          653 SLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI  731 (850)
Q Consensus       653 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  731 (850)
                       +|++|++++|++++ .+|..|+.+++|+.|+|++|++++..|..|+.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus       449 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          449 -SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             -CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence             89999999999997 4788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCcCCCCCCccccC-CCCccccCCCCCCCCCCCC
Q 003084          732 VAYNNLSGKIPEWTAQFA-TFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       732 l~~N~l~~~~p~~~~~~~-~~~~~~~~~n~~~c~~~l~  768 (850)
                      +++|+++ .+|..+..+. ++..+.+++||+.|+|++.
T Consensus       528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999999 5666577776 5899999999999999975

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-46  Score=428.61  Aligned_cols=272  Identities=22%  Similarity=0.294  Sum_probs=181.0

Q ss_pred             CeeeccCC-cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084          411 RWLLLEGN-HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD  489 (850)
Q Consensus       411 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  489 (850)
                      +.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+.. .|.  ..+++|+.|++++
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~  334 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEES
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcC
Confidence            44444444 444445555555666666666666655 345555555 66666666666552 222  3455666666666


Q ss_pred             CcCCCCCCCCcCCCcccEEEccCccccccc--CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccC
Q 003084          490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQL--KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE  567 (850)
Q Consensus       490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  567 (850)
                      |.+.+..+. ..+++|+.|++++|.+.+..  +. .+..+++|+.|++++|.+.+..+. +.++++|+.|++++|.+.+.
T Consensus       335 n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          335 NKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             Ccccccccc-ccCCCCCEEeCcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            665544433 33555666666666554332  22 566777788888888877754433 77778888888888877765


Q ss_pred             Cc-hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084          568 VP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  646 (850)
Q Consensus       568 ~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (850)
                      .+ ..+..+++|++|++++|.+.+..+..+..++                                              
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------  445 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS----------------------------------------------  445 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT----------------------------------------------
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCC----------------------------------------------
Confidence            54 4567777888888888877776666665433                                              


Q ss_pred             chhhhhccCCeEEccCCccc-cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084          647 YQGRVLSLLAGLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN  725 (850)
Q Consensus       647 ~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  725 (850)
                             +|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..|+.+++|+.|++++|++++..|..+..++
T Consensus       446 -------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          446 -------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             -------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             -------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence                   6788888888776 45677777788888888888888777777777788888888888888777777777788


Q ss_pred             CCCEEEccCCcCcCCCCC
Q 003084          726 TLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       726 ~L~~L~l~~N~l~~~~p~  743 (850)
                      +|+.|++++|+++|.+|.
T Consensus       519 ~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCBCCCTTT
T ss_pred             CCcEEEecCCcccCCCcc
Confidence            888888888888777775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=417.26  Aligned_cols=468  Identities=21%  Similarity=0.189  Sum_probs=385.0

Q ss_pred             ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEE
Q 003084          237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD  316 (850)
Q Consensus       237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  316 (850)
                      +++.|++ .++.+.+..+..+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            7899999 444555555667888999999999999877654444 47889999999999999888888899999999999


Q ss_pred             ccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCC----CEEEc
Q 003084          317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL----EFLSL  391 (850)
Q Consensus       317 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l  391 (850)
                      +++|.++ .++...+..+++|++|++++|.+++ .+|..++++++|++|++++|.++ .++...+..+++|    +.|++
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence            9999987 5555445568899999999999886 46888999999999999999988 5554444457777    88999


Q ss_pred             cCCccCccccccccCCCCCCeeeccCCcCcc-------------------------------cCCcCCCCCC--CCcEEE
Q 003084          392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG-------------------------------EIPQSLSKCS--SLKGLY  438 (850)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~~~l~--~L~~L~  438 (850)
                      ++|.+.+..+..+... +|+.|++++|....                               .....+..++  .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999988877777665 78999888874221                               0111122222  245566


Q ss_pred             CcCC-CCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084          439 LNNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       439 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      +.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ...++|+.|++++|.+.+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence            6666 566677788889999999999999988 467777788 9999999999998 4444 467899999999999876


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCc--CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCC-C
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-S  594 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~  594 (850)
                      ..+.   ..+++|+.|++++|.+++..  +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ .
T Consensus       340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            6543   67899999999999998654  67788999999999999999865554 8999999999999999887655 3


Q ss_pred             CcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc
Q 003084          595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG  674 (850)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  674 (850)
                      .+..                                                     +++|++|++++|.+.+..|..|.
T Consensus       416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred             hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence            4443                                                     34899999999999999999999


Q ss_pred             CCCCCCEEECcCCcCC-ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCc
Q 003084          675 NLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNK  753 (850)
Q Consensus       675 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~  753 (850)
                      ++++|+.|++++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|..+..++.+..
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999998 578999999999999999999999999999999999999999999999998888889999999


Q ss_pred             cccCCCCCCCCCCCCCC
Q 003084          754 SSYDGNPFLCGLPLPIC  770 (850)
Q Consensus       754 ~~~~~n~~~c~~~l~~c  770 (850)
                      +.+++||+.|+||..++
T Consensus       523 L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          523 IWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             EECCSSCBCCCTTTTHH
T ss_pred             EEecCCcccCCCcchHH
Confidence            99999999999986533

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-44  Score=412.48  Aligned_cols=491  Identities=20%  Similarity=0.203  Sum_probs=316.7

Q ss_pred             EEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEE
Q 003084          112 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR  191 (850)
Q Consensus       112 ~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  191 (850)
                      ..+.+++.++.    +|. .+.  ++|++|++++|++++..|.+|.++++|++|++++|.++ .++...|.++++|++|+
T Consensus         9 ~c~~~~~~l~~----ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            9 VCDGRSRSFTS----IPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EEECTTSCCSS----CCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred             eEECCCCcccc----ccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence            34555555543    333 221  45666666666666555566666666666666666665 33333566666666666


Q ss_pred             CcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCC
Q 003084          192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI  271 (850)
Q Consensus       192 L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~  271 (850)
                      +++|.+.+ .+...++++++|++|++++|.+...                          ..|..+..+++|++|++++|
T Consensus        81 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------------~~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A           81 LSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL--------------------------GVTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             CTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS--------------------------CSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCccCc-cCHHHhccCCCCcEEECCCCccccc--------------------------chhhhhhccCCccEEECCCC
Confidence            66666553 2223355556666666555544321                          11233445566666666666


Q ss_pred             cccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccC
Q 003084          272 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI  351 (850)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  351 (850)
                      ...+.+|...+..+++|++|++++|.+.+..+..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+++..
T Consensus       134 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred             ccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccc
Confidence            6555555544567888888888888888878888888889999999988876 667666666888899999888887532


Q ss_pred             --c-ccccCCCCCCEEEccCCcCCCCcchHHh---hcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCC
Q 003084          352 --P-SSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP  425 (850)
Q Consensus       352 --~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  425 (850)
                        | .....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+...     ++             ....
T Consensus       213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~-------------~~~~  274 (549)
T 2z81_A          213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FN-------------PSES  274 (549)
T ss_dssp             CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CC-------------CCTT
T ss_pred             ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----cc-------------ccch
Confidence              1 1223456777777777766543333322   224455555555555432110     00             0011


Q ss_pred             cCCCCCCCCcEEECcCCCCCCC-----CcccccCCCCCcEEECCCCccccCcchhc-cCCCCCCEEeccCCcCCCCCCCC
Q 003084          426 QSLSKCSSLKGLYLNNNNLSGK-----IPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSC  499 (850)
Q Consensus       426 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~  499 (850)
                      ..+..+++++.|++.++.+...     .+..+...++|+.|++++|.+.. +|..+ ..+++|+.|++++|.+.      
T Consensus       275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~------  347 (549)
T 2z81_A          275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMV------  347 (549)
T ss_dssp             TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCC------
T ss_pred             hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccc------
Confidence            2234556666777666655421     11112223455566666555542 33322 34555666666555554      


Q ss_pred             cCCCcccEEEccCcccccccC--ccccCCCCCCcEEECcCCcCCCCcC--ccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084          500 FYPLSIKQVHLSKNMLHGQLK--EGTFFNCSSLVTLDLSYNYLNGSIP--DWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  575 (850)
Q Consensus       500 ~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  575 (850)
                                       +.++  ...+..+++|+.|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+
T Consensus       348 -----------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          348 -----------------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             -----------------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             -----------------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence                             3222  1135677888888888888876532  45788889999999999888 567778888


Q ss_pred             CCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccC
Q 003084          576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  655 (850)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  655 (850)
                      ++|++|++++|.+++.....                                                        +++|
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~--------------------------------------------------------~~~L  433 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCI--------------------------------------------------------PQTL  433 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTS--------------------------------------------------------CTTC
T ss_pred             ccccEEECCCCCcccccchh--------------------------------------------------------cCCc
Confidence            89999999999886433211                                                        1268


Q ss_pred             CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      ++||+++|++++..    ..+++|++|+|++|+++ .+|. ...+++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            99999999998643    57889999999999998 5565 467899999999999999888888999999999999999


Q ss_pred             cCcCCCCC
Q 003084          736 NLSGKIPE  743 (850)
Q Consensus       736 ~l~~~~p~  743 (850)
                      ++.|.+|.
T Consensus       508 ~~~~~~~~  515 (549)
T 2z81_A          508 PWDCSCPR  515 (549)
T ss_dssp             CBCCCHHH
T ss_pred             CccCCCcc
Confidence            99988873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.1e-44  Score=409.47  Aligned_cols=487  Identities=19%  Similarity=0.202  Sum_probs=347.5

Q ss_pred             EEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccC
Q 003084          140 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN  219 (850)
Q Consensus       140 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~  219 (850)
                      ..+.+++.++ .+|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+.+. +                 
T Consensus         9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~-~-----------------   66 (549)
T 2z81_A            9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI-E-----------------   66 (549)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEE-C-----------------
T ss_pred             eEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCcc-C-----------------
Confidence            3455555555 3343332  56666666666665 33322566666666666666655421 1                 


Q ss_pred             CccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCc
Q 003084          220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA  299 (850)
Q Consensus       220 n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  299 (850)
                                                        |..+..+++|++|++++|.+.+..|.. ++.+++|++|++++|.+.
T Consensus        67 ----------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           67 ----------------------------------GDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             ----------------------------------TTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCS
T ss_pred             ----------------------------------hhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCccc
Confidence                                              222334445555555555555444433 367788888888888887


Q ss_pred             Cc-CccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchH
Q 003084          300 GP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH  378 (850)
Q Consensus       300 ~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  378 (850)
                      +. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~  190 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEI  190 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHH
T ss_pred             ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchh
Confidence            63 45678889999999999998555777666666899999999999999889999999999999999999987 78888


Q ss_pred             HhhcCCCCCEEEccCCccCccc---cccccCCCCCCeeeccCCcCcccCC----cCCCCCCCCcEEECcCCCCCCCCccc
Q 003084          379 LAMCCVNLEFLSLSNNSLKGHI---FSRIFSLRNLRWLLLEGNHFVGEIP----QSLSKCSSLKGLYLNNNNLSGKIPRW  451 (850)
Q Consensus       379 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~  451 (850)
                      ++..+++|++|++++|.+.+..   ......+++|+.|++++|.+.+..+    ..+..+++|+.+++++|.+.+.....
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~  270 (549)
T 2z81_A          191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN  270 (549)
T ss_dssp             HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred             hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence            7777899999999999988642   1223456778888888877664322    23345667777777777654321100


Q ss_pred             ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCC-----CCCc-CCCcccEEEccCcccccccCccccC
Q 003084          452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL-----PSCF-YPLSIKQVHLSKNMLHGQLKEGTFF  525 (850)
Q Consensus       452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-----~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~  525 (850)
                           .             .....+..+++|+.|+++++.+....     +..+ ...+|+.+++++|.+. .+|...+.
T Consensus       271 -----~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~  331 (549)
T 2z81_A          271 -----P-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ  331 (549)
T ss_dssp             -----C-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred             -----c-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh
Confidence                 0             00112233445555555555443211     0000 1346677777777664 56654556


Q ss_pred             CCCCCcEEECcCCcCCCCcC---ccccCCCCCCEEECcCCcCccCCc--hhccCCCCCCEEeCCCCcCCccCCCCcccCc
Q 003084          526 NCSSLVTLDLSYNYLNGSIP---DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT  600 (850)
Q Consensus       526 ~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  600 (850)
                      .+++|+.|++++|++++..|   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|..+..  
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~--  408 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW--  408 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC--
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc--
Confidence            89999999999999987654   347889999999999999986543  568899999999999999985 4444433  


Q ss_pred             cccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCC
Q 003084          601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ  680 (850)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  680 (850)
                                                                         +++|++|++++|++++ +|..+  .++|+
T Consensus       409 ---------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~  434 (549)
T 2z81_A          409 ---------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTLE  434 (549)
T ss_dssp             ---------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTCS
T ss_pred             ---------------------------------------------------cccccEEECCCCCccc-ccchh--cCCce
Confidence                                                               2389999999999984 44444  26899


Q ss_pred             EEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCC
Q 003084          681 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP  760 (850)
Q Consensus       681 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~  760 (850)
                      .|+|++|++++..    ..+++|+.|++++|+++ .+|. ...+++|++|++++|++++.+|.++..+..+..+.+++||
T Consensus       435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            9999999999653    57899999999999999 6676 4689999999999999999999888999999999999999


Q ss_pred             CCCCCC
Q 003084          761 FLCGLP  766 (850)
Q Consensus       761 ~~c~~~  766 (850)
                      +.|+||
T Consensus       509 ~~~~~~  514 (549)
T 2z81_A          509 WDCSCP  514 (549)
T ss_dssp             BCCCHH
T ss_pred             ccCCCc
Confidence            999997

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-45  Score=424.92  Aligned_cols=384  Identities=19%  Similarity=0.248  Sum_probs=221.7

Q ss_pred             CcCcCcCccCcCCCCCccEEEccCCcCCcC-----------------CChhhh-hcCCCCcEEEccCCcCcccCcccccC
Q 003084          296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGH-----------------IPVEIG-DILPSLVYFNISMNALDGSIPSSFGN  357 (850)
Q Consensus       296 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~  357 (850)
                      |.+++ +|..+.++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+++
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            44454 455555666666666666666543                 554443 12555555565555555555555555


Q ss_pred             CCCCCEEEccCCc-CCC-CcchHHhh-----cCCCCCEEEccCCccCccccc--cccCCCCCCeeeccCCcCcccCCcCC
Q 003084          358 VIFLQFLDLSNNK-LTG-EIPDHLAM-----CCVNLEFLSLSNNSLKGHIFS--RIFSLRNLRWLLLEGNHFVGEIPQSL  428 (850)
Q Consensus       358 l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~  428 (850)
                      +++|++|++++|+ +++ .+|..+..     .+++|++|++++|.+. .+|.  .+..+++|++|++++|.+.+.+| .+
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence            5556666666555 554 45554432     1245555555555554 3444  44555555555555555544444 44


Q ss_pred             CCCCCCcEEECcCCCCCCCCcccccCCCC-CcEEECCCCccccCcchhccCCC--CCCEEeccCCcCCCCCCCCcCCCcc
Q 003084          429 SKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLPSCFYPLSI  505 (850)
Q Consensus       429 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~L  505 (850)
                      ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+.            
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------  415 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG------------  415 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT------------
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC------------
Confidence            44445555555555444 33444444444 444444444444 3333333322  4444444444444            


Q ss_pred             cEEEccCcccccccCccccC-------CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC--
Q 003084          506 KQVHLSKNMLHGQLKEGTFF-------NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN--  576 (850)
Q Consensus       506 ~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--  576 (850)
                                 +..|. .+.       .+++|+.|++++|+++...+..+..+++|++|++++|+++...+..+....  
T Consensus       416 -----------~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          416 -----------SVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             -----------TTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             -----------Ccchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence                       33333 333       556778888888887755555566677888888888887743333333332  


Q ss_pred             -----CCCEEeCCCCcCCccCCCCcc--cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchh
Q 003084          577 -----QLQLLDLSDNNLHGLIPSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG  649 (850)
Q Consensus       577 -----~L~~L~Ls~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  649 (850)
                           +|+.|++++|+++. +|..+.  .                                                   
T Consensus       484 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~---------------------------------------------------  511 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLTK-LSDDFRATT---------------------------------------------------  511 (636)
T ss_dssp             CTTGGGCCEEECCSSCCCB-CCGGGSTTT---------------------------------------------------
T ss_pred             ccccCCccEEECcCCcCCc-cChhhhhcc---------------------------------------------------
Confidence                 78888888888773 333332  2                                                   


Q ss_pred             hhhccCCeEEccCCccccCCCccccCCCCCCEEEC------cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhc
Q 003084          650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL------SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD  723 (850)
Q Consensus       650 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  723 (850)
                        +++|++|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. 
T Consensus       512 --l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-  586 (636)
T 4eco_A          512 --LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-  586 (636)
T ss_dssp             --CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred             --CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence              3378888888888886 7777788888888888      45777778888888888888888888888 46776654 


Q ss_pred             CCCCCEEEccCCcCcCCCCCCccc--cCCCCccccCCCCCCCCCC
Q 003084          724 LNTLAIFIVAYNNLSGKIPEWTAQ--FATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       724 l~~L~~L~l~~N~l~~~~p~~~~~--~~~~~~~~~~~n~~~c~~~  766 (850)
                       ++|+.|++++|++.+..+..+..  ......+.+......|+||
T Consensus       587 -~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          587 -PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             -TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             -CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence             78888888888776544332211  1112233344455555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.8e-42  Score=404.90  Aligned_cols=520  Identities=20%  Similarity=0.193  Sum_probs=299.3

Q ss_pred             CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCC
Q 003084          109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE  188 (850)
Q Consensus       109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~  188 (850)
                      ++++|||++|.|++    +++.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|.++ .+|...|.++++|+
T Consensus        53 ~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence            67777777777764    66566777777777777777777666667777777777777777776 56655677777777


Q ss_pred             eEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEc
Q 003084          189 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL  268 (850)
Q Consensus       189 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l  268 (850)
                      +|++++|.+++ .+...++++++|+.|++++|                                                
T Consensus       128 ~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N------------------------------------------------  158 (635)
T 4g8a_A          128 KLVAVETNLAS-LENFPIGHLKTLKELNVAHN------------------------------------------------  158 (635)
T ss_dssp             EEECTTSCCCC-STTCCCTTCTTCCEEECCSS------------------------------------------------
T ss_pred             EEECCCCcCCC-CChhhhhcCcccCeeccccC------------------------------------------------
Confidence            77777776653 22223444444444444444                                                


Q ss_pred             cCCccccc-CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc----cEEEccCCcCCcCCChhhhhcCCCCcEEEcc
Q 003084          269 SHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL----RFLDVSNNNFQGHIPVEIGDILPSLVYFNIS  343 (850)
Q Consensus       269 ~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  343 (850)
                         .+.+. .|.. +..+++|++|++++|.+.+..+..+..+.++    ..++++.|.+. .++...+. ...+..+++.
T Consensus       159 ---~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~  232 (635)
T 4g8a_A          159 ---LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLR  232 (635)
T ss_dssp             ---CCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE
T ss_pred             ---ccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhh
Confidence               33221 2222 3566777777777777766555544333222    24555555554 33333332 1234445554


Q ss_pred             CCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCc-
Q 003084          344 MNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV-  421 (850)
Q Consensus       344 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  421 (850)
                      +|.... ..+..+..+..++...+..+....                   ...+.......+..+..+....+..+... 
T Consensus       233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-------------------~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~  293 (635)
T 4g8a_A          233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-------------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDY  293 (635)
T ss_dssp             SCCSSHHHHHHHHHTTTTCEEEEEEEECCTT-------------------SCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred             cccccccccchhhcCCccccccccccccccc-------------------ccccccccccccccccchhhhhhhhhhhcc
Confidence            443321 122233344444443332221110                   00011111122222233333333222111 


Q ss_pred             --ccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCC
Q 003084          422 --GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC  499 (850)
Q Consensus       422 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  499 (850)
                        ...+..+..+.+++.+++.++.+...  ..+.....++.|++.+|.+....+   ..+..|+.++++.|..... +..
T Consensus       294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-~~~  367 (635)
T 4g8a_A          294 YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-FSE  367 (635)
T ss_dssp             CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-CCC
T ss_pred             cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-ccc
Confidence              11222333444555555555554322  123344555555555555543322   2234555555555554422 222


Q ss_pred             cCCCcccEEEccCccccc--ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC-chhccCCC
Q 003084          500 FYPLSIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLN  576 (850)
Q Consensus       500 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~  576 (850)
                      ...++|+.+++++|.+..  ..+. .+..+.+|+.+++..+.... .+..+..+++|+.++++++...... +..+..++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccc
Confidence            334556666666665532  1222 44566777777777777653 3445667777888887777655443 34566777


Q ss_pred             CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084          577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  656 (850)
Q Consensus       577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  656 (850)
                      +++.+++++|.+.+..+..+....                                                     .++
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~-----------------------------------------------------~L~  472 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLS-----------------------------------------------------SLE  472 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------TCC
T ss_pred             ccccccccccccccccccccccch-----------------------------------------------------hhh
Confidence            788888888877776666655433                                                     677


Q ss_pred             eEEccCCcc-ccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          657 GLDLSCNKL-VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       657 ~L~Ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      .|++++|++ .+..|..|..+++|++|+|++|++++..|..|+++++|+.|+|++|++++..|..|..+++|++|++++|
T Consensus       473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred             hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence            788887764 3346677778888888888888888777777888888888888888888777777788888888888888


Q ss_pred             cCcCCCCCCcccc-CCCCccccCCCCCCCCCCCC
Q 003084          736 NLSGKIPEWTAQF-ATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       736 ~l~~~~p~~~~~~-~~~~~~~~~~n~~~c~~~l~  768 (850)
                      ++++.+|..+..+ .+++.+.+++|||.|+|++.
T Consensus       553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          553 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence            8887777766655 56777778888888888653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.9e-44  Score=405.64  Aligned_cols=464  Identities=19%  Similarity=0.163  Sum_probs=279.5

Q ss_pred             cEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeE
Q 003084          111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL  190 (850)
Q Consensus       111 ~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L  190 (850)
                      ++|++++|.++.    +|. .+.  ++|++|++++|++.+..|.+|.++++|++|++++|.++ .+++..|.++++|++|
T Consensus         3 ~~l~ls~n~l~~----ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIH----VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSS----CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccc----ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEE
Confidence            467888888765    543 333  67888888888887777777888888888888888887 4433377778888888


Q ss_pred             ECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccC
Q 003084          191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH  270 (850)
Q Consensus       191 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~  270 (850)
                      ++++|.++. .+..   .+++                                                   |++|++++
T Consensus        75 ~Ls~N~l~~-lp~~---~l~~---------------------------------------------------L~~L~L~~   99 (520)
T 2z7x_B           75 DLSHNKLVK-ISCH---PTVN---------------------------------------------------LKHLDLSF   99 (520)
T ss_dssp             ECCSSCCCE-EECC---CCCC---------------------------------------------------CSEEECCS
T ss_pred             ecCCCceee-cCcc---ccCC---------------------------------------------------ccEEeccC
Confidence            887776652 1111   2333                                                   33333333


Q ss_pred             Ccccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc--cEEEccCCcC--CcCCChhhhhcCCCCcEEEccCC
Q 003084          271 IKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNF--QGHIPVEIGDILPSLVYFNISMN  345 (850)
Q Consensus       271 ~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~L~~n  345 (850)
                      |.+.+ .+|..+ +.+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .+..|..+...-.....+++++|
T Consensus       100 N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n  175 (520)
T 2z7x_B          100 NAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN  175 (520)
T ss_dssp             SCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred             Cccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence            33333 233332 566667777777666654   233444444  6666666655  43444332221011223344444


Q ss_pred             cCcccCc-ccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccC
Q 003084          346 ALDGSIP-SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI  424 (850)
Q Consensus       346 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  424 (850)
                      .+.+.++ ..+..+++|+.|++++|.......                  .+.+.++ .+..+++|+.|++++|.+.+..
T Consensus       176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~  236 (520)
T 2z7x_B          176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNS  236 (520)
T ss_dssp             SCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred             cchhhhhhhhhhcccceeeccccccccccccc------------------eeecchh-hhccccchhhccccccccCHHH
Confidence            4433222 233444445555554443000000                  0222222 3444445555555444443211


Q ss_pred             CcCC---CCCCCCcEEECcCCCCCCCCcccc-----cCCCCCcEEECCCCccccCcchhccCC---CCCCEEeccCCcCC
Q 003084          425 PQSL---SKCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIPVEFCRL---DSLQILDISDNNIS  493 (850)
Q Consensus       425 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~ls~n~l~  493 (850)
                      +..+   ...++|++|++++|.+++.+|..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+.
T Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc
Confidence            1000   012345555555555544444444     4445555555555544 1111222222   45566666665543


Q ss_pred             CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc--CCchh
Q 003084          494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG--EVPIQ  571 (850)
Q Consensus       494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~  571 (850)
                      ..                       .   .+..+++|++|++++|++++..|..+.++++|++|++++|++++  ..|..
T Consensus       316 ~~-----------------------~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          316 HM-----------------------L---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             CC-----------------------C---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             cc-----------------------c---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence            21                       1   12567888888888888888778888888899999999998886  44567


Q ss_pred             ccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhh
Q 003084          572 LCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR  650 (850)
Q Consensus       572 l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (850)
                      +..+++|++|++++|++.+ .++..+...                                                   
T Consensus       370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l---------------------------------------------------  398 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVSYDEKKGDCSWT---------------------------------------------------  398 (520)
T ss_dssp             HTTCTTCCEEECCSSCCBCCGGGCSCCCC---------------------------------------------------
T ss_pred             HhhCCCCCEEECCCCcCCcccccchhccC---------------------------------------------------
Confidence            8888999999999998887 333334332                                                   


Q ss_pred             hhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084          651 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF  730 (850)
Q Consensus       651 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  730 (850)
                        ++|++|++++|++++..|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|
T Consensus       399 --~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          399 --KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             --TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             --ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence              3789999999999877776664  78999999999998 677777799999999999999985433448889999999


Q ss_pred             EccCCcCcCCCCC
Q 003084          731 IVAYNNLSGKIPE  743 (850)
Q Consensus       731 ~l~~N~l~~~~p~  743 (850)
                      ++++|+++|.++.
T Consensus       474 ~l~~N~~~c~c~~  486 (520)
T 2z7x_B          474 WLHTNPWDCSCPR  486 (520)
T ss_dssp             ECCSSCBCCCHHH
T ss_pred             ECcCCCCcccCCc
Confidence            9999999987763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-44  Score=416.75  Aligned_cols=364  Identities=19%  Similarity=0.246  Sum_probs=294.9

Q ss_pred             CCcCcccCcccccCCCCCCEEEccCCcCCCC-----------------cchHHh-hcCCCCCEEEccCCccCcccccccc
Q 003084          344 MNALDGSIPSSFGNVIFLQFLDLSNNKLTGE-----------------IPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIF  405 (850)
Q Consensus       344 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~  405 (850)
                      .|.+++ +|..++++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            466776 777888888888888888888753                 676654 2478888888888888888888888


Q ss_pred             CCCCCCeeeccCCc-Ccc-cCCcCCCCC------CCCcEEECcCCCCCCCCcc--cccCCCCCcEEECCCCccccCcchh
Q 003084          406 SLRNLRWLLLEGNH-FVG-EIPQSLSKC------SSLKGLYLNNNNLSGKIPR--WLGNLKGLQHIVMPKNHLEGPIPVE  475 (850)
Q Consensus       406 ~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  475 (850)
                      ++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|.  .++.+++|++|++++|.+.+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            88888888888887 776 667666654      78888888888887 6676  78888888888888888887777 7


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCCCc-CCCc-ccEEEccCcccccccCccccCCC--CCCcEEECcCCcCCCCcCcccc--
Q 003084          476 FCRLDSLQILDISDNNISGSLPSCF-YPLS-IKQVHLSKNMLHGQLKEGTFFNC--SSLVTLDLSYNYLNGSIPDWID--  549 (850)
Q Consensus       476 ~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~--  549 (850)
                      +..+++|+.|++++|.+. .+|..+ ..++ |+.|++++|.++ .+|. .+..+  ++|+.|++++|.+++..|..+.  
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            788888888888888887 444443 3666 888888888887 5665 55554  4899999999999999888888  


Q ss_pred             -----CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084          550 -----GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  624 (850)
Q Consensus       550 -----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (850)
                           .+++|+.|++++|++++..+..+..+++|++|++++|+++.+++..+....                        
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~------------------------  481 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN------------------------  481 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT------------------------
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc------------------------
Confidence                 788999999999999966666677899999999999999965555443321                        


Q ss_pred             CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc--CCCCCCEEECcCCcCCccCcccCCCCCC
Q 003084          625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRH  702 (850)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  702 (850)
                                            .....+++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++
T Consensus       482 ----------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          482 ----------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             ----------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             ----------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence                                  00011348999999999999 6888887  99999999999999997 8999999999


Q ss_pred             CCEEEC------cCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCC
Q 003084          703 IESLDL------SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG  764 (850)
Q Consensus       703 L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~  764 (850)
                      |+.|++      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  +.+..+.+++||+.|-
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            999999      56888999999999999999999999999 67888543  7889999999999884

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.1e-43  Score=409.15  Aligned_cols=380  Identities=21%  Similarity=0.244  Sum_probs=292.4

Q ss_pred             CcCCcCCChhhhhcCCCCcEEEccCCcCcc-----------------cCccccc--CCCCCCEEEccCCcCCCCcchHHh
Q 003084          320 NNFQGHIPVEIGDILPSLVYFNISMNALDG-----------------SIPSSFG--NVIFLQFLDLSNNKLTGEIPDHLA  380 (850)
Q Consensus       320 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~  380 (850)
                      |.+++ +|..+.. +++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            66665 7766554 7788888888888876                 3777776  888888888888888778886554


Q ss_pred             hcCCCCCEEEccCCc-cCc-cccccccCC-------CCCCeeeccCCcCcccCCc--CCCCCCCCcEEECcCCCCCCCCc
Q 003084          381 MCCVNLEFLSLSNNS-LKG-HIFSRIFSL-------RNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIP  449 (850)
Q Consensus       381 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~  449 (850)
                       .+++|+.|++++|+ +.+ .+|..+..+       ++|++|++++|.+. .+|.  .+.++++|+.|++++|.++ .+|
T Consensus       513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence             48888888888887 776 666655544       48888888888888 6777  7888888888888888887 666


Q ss_pred             ccccCCCCCcEEECCCCccccCcchhccCCCC-CCEEeccCCcCCCCCCCCcCC---CcccEEEccCcccccccCcc--c
Q 003084          450 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYP---LSIKQVHLSKNMLHGQLKEG--T  523 (850)
Q Consensus       450 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~--~  523 (850)
                       .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..   ++|+.|++++|.+.+.++.-  .
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             7888888888888888888 67777888888 888888888887 55655542   34888888888887765431  1


Q ss_pred             cC--CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchh-ccC-------CCCCCEEeCCCCcCCccCC
Q 003084          524 FF--NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCR-------LNQLQLLDLSDNNLHGLIP  593 (850)
Q Consensus       524 ~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~-------l~~L~~L~Ls~n~l~~~~~  593 (850)
                      +.  .+++|+.|++++|.++...+..+..+++|+.|+|++|++. .+|.. +..       +++|+.|+|++|+++. +|
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp  744 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS  744 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch
Confidence            12  3458999999999999554445568999999999999998 44443 332       2389999999999884 44


Q ss_pred             CCcc--cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc
Q 003084          594 SCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP  671 (850)
Q Consensus       594 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  671 (850)
                      ..+.  .                                                     +++|+.|+|++|++++ +|.
T Consensus       745 ~~l~~~~-----------------------------------------------------l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          745 DDFRATT-----------------------------------------------------LPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             GGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-CCC
T ss_pred             HHhhhcc-----------------------------------------------------CCCcCEEEeCCCCCCc-cch
Confidence            4432  2                                                     3489999999999997 788


Q ss_pred             cccCCCCCCEEECcC------CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCc
Q 003084          672 QIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT  745 (850)
Q Consensus       672 ~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~  745 (850)
                      .+..+++|+.|+|++      |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+
T Consensus       771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            899999999999976      888889999999999999999999999 58888765  699999999999987666655


Q ss_pred             cccCCCCccccCCCCCCC--CCC
Q 003084          746 AQFATFNKSSYDGNPFLC--GLP  766 (850)
Q Consensus       746 ~~~~~~~~~~~~~n~~~c--~~~  766 (850)
                      ..........+.+|+..+  +||
T Consensus       848 ~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          848 CPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHHHTTCCEEECCTTSEEESCG
T ss_pred             cccccchheeecCCCccccCCCC
Confidence            444444555666666555  665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.8e-41  Score=392.86  Aligned_cols=539  Identities=21%  Similarity=0.186  Sum_probs=380.9

Q ss_pred             cEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCC
Q 003084           59 KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL  138 (850)
Q Consensus        59 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L  138 (850)
                      ++.+-++..++ .+|. .+.  +++++|+|  ++|.+++..+..|.+ +++|++|+|++|.|++    +++++|.++++|
T Consensus        34 ~~~~c~~~~l~-~vP~-~lp--~~~~~LdL--s~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L  102 (635)
T 4g8a_A           34 ITYQCMELNFY-KIPD-NLP--FSTKNLDL--SFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT----IEDGAYQSLSHL  102 (635)
T ss_dssp             TEEECTTSCCS-SCCS-SSC--TTCCEEEC--TTSCCCEECTTTTTT-CTTCCEEECTTCCCCE----ECTTTTTTCTTC
T ss_pred             CEEECCCCCcC-ccCC-CCC--cCCCEEEe--eCCCCCCCCHHHHhC-CCCCCEEECCCCcCCC----cChhHhcCCCCC
Confidence            45566666666 4554 343  48999999  889998887788888 9999999999999976    777889999999


Q ss_pred             CEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEcc
Q 003084          139 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK  218 (850)
Q Consensus       139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~  218 (850)
                      ++|+|++|++++..+.+|.++++|++|++++|.++ .++...|+++++|++|++++|.+........+..+++|+.|+++
T Consensus       103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            99999999999888889999999999999999998 77776899999999999999998754444556778888888888


Q ss_pred             CCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcC
Q 003084          219 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL  298 (850)
Q Consensus       219 ~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  298 (850)
                      +|++.......                           +..+.+                     .......++++.|.+
T Consensus       182 ~N~l~~~~~~~---------------------------l~~L~~---------------------l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          182 SNKIQSIYCTD---------------------------LRVLHQ---------------------MPLLNLSLDLSLNPM  213 (635)
T ss_dssp             SSCCCEECGGG---------------------------GHHHHT---------------------CTTCCCEEECTTCCC
T ss_pred             Ccccccccccc---------------------------ccchhh---------------------hhhhhhhhhcccCcc
Confidence            87765432211                           110000                     001122344444444


Q ss_pred             cCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCc------CcccCcccccCCCCCCEEEccCCcCC
Q 003084          299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVIFLQFLDLSNNKLT  372 (850)
Q Consensus       299 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~  372 (850)
                      ....+..+ ....++.+++++|.....++...+..++.++...+..+.      +.......+..+..+...++..+...
T Consensus       214 ~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          214 NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             CEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             cccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence            44332222 233456677776655444444445556666665554322      22223334455555666655554332


Q ss_pred             CCcc--hHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcc
Q 003084          373 GEIP--DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR  450 (850)
Q Consensus       373 ~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  450 (850)
                      ....  ...+..+.+++.+.+.++.+....  .+....+++.|++.+|.+....+.   .++.|+.+++..|.....  .
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~  365 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--F  365 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--C
T ss_pred             ccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--c
Confidence            1111  112234567778887777765432  345566778888888777644332   345677777777776532  2


Q ss_pred             cccCCCCCcEEECCCCcccc--CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCC
Q 003084          451 WLGNLKGLQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS  528 (850)
Q Consensus       451 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  528 (850)
                      ....+++|+.+++++|.+..  ..+..+..+.+|+.++++.+.....                        +. .+..++
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------------------------~~-~~~~l~  420 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM------------------------SS-NFLGLE  420 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE------------------------CS-CCTTCT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc------------------------cc-cccccc
Confidence            33456777777777776643  2344555666777777776655422                        22 456677


Q ss_pred             CCcEEECcCCcCCCCc-CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcC-CccCCCCcccCccccccC
Q 003084          529 SLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL-HGLIPSCFDNTTLHESYN  606 (850)
Q Consensus       529 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~  606 (850)
                      +|+.++++.+...... +..|..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..++      
T Consensus       421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------  494 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------  494 (635)
T ss_dssp             TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------
Confidence            7778887776655443 34567788888888888888877777888888888888888864 344566665533      


Q ss_pred             CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084          607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  686 (850)
                                                                     +|++|||++|++++..|..|.++++|++|+|++
T Consensus       495 -----------------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          495 -----------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             -----------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             -----------------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence                                                           799999999999988899999999999999999


Q ss_pred             CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCCcCcCCCCC
Q 003084          687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       687 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~  743 (850)
                      |+|++..|..|+.+++|+.|||++|++++..|..+..+ ++|++|++++|++.|.+..
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99999999999999999999999999999999999998 6899999999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.8e-43  Score=395.61  Aligned_cols=440  Identities=20%  Similarity=0.200  Sum_probs=359.7

Q ss_pred             CCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEE
Q 003084          261 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF  340 (850)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  340 (850)
                      +++++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..   .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            67888888888877655555 478999999999999999888888999999999999999998 67766   58899999


Q ss_pred             EccCCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCC--CEEEccCCcc--CccccccccCCC-CCCeee
Q 003084          341 NISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL--EFLSLSNNSL--KGHIFSRIFSLR-NLRWLL  414 (850)
Q Consensus       341 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~  414 (850)
                      ++++|.+++ .+|..++.+++|++|++++|.+++    ..+..+++|  ++|++++|.+  .+..|..+..+. +...++
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            999999987 478899999999999999999874    234457888  9999999999  777777776655 344677


Q ss_pred             ccCCcCcccCCc-CCCCCCCCcEEECcCCC-------CCCCCcccccCCCCCcEEECCCCccccCcchhcc---CCCCCC
Q 003084          415 LEGNHFVGEIPQ-SLSKCSSLKGLYLNNNN-------LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQ  483 (850)
Q Consensus       415 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~  483 (850)
                      +++|.+.+..+. .+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            888888765544 67789999999999987       444444 678899999999999888754322221   246899


Q ss_pred             EEeccCCcCCCCCCCCc------CCCcccEEEccCcccccccCccccCCC---CCCcEEECcCCcCCCCcCccccCCCCC
Q 003084          484 ILDISDNNISGSLPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNC---SSLVTLDLSYNYLNGSIPDWIDGLSQL  554 (850)
Q Consensus       484 ~L~ls~n~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L  554 (850)
                      .|++++|.+.+.+|..+      .++.|+.+++++|.+  .+|...+..+   ++|+.|++++|.+....  .+..+++|
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L  326 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF  326 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence            99999999998777765      377899999999988  4553233333   67999999999987542  23689999


Q ss_pred             CEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc--CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhh
Q 003084          555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL--IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  632 (850)
Q Consensus       555 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (850)
                      ++|++++|++++..|..+..+++|++|++++|++++.  .|..+..                                  
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----------------------------------  372 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----------------------------------  372 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence            9999999999988899999999999999999999863  2233333                                  


Q ss_pred             hhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc-cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084          633 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  711 (850)
Q Consensus       633 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  711 (850)
                                         +++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+.  ++|+.|++++|
T Consensus       373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N  431 (520)
T 2z7x_B          373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN  431 (520)
T ss_dssp             -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred             -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence                               34899999999999985665 488999999999999999988887765  79999999999


Q ss_pred             cCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCCCC
Q 003084          712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC  770 (850)
Q Consensus       712 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c  770 (850)
                      +++ .+|..+..+++|+.|++++|+++...+..+..+..+..+.+++||+.|+|++.|.
T Consensus       432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            999 7888888999999999999999954444477888999999999999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.3e-42  Score=401.24  Aligned_cols=378  Identities=19%  Similarity=0.240  Sum_probs=241.0

Q ss_pred             CcccccCchhhhhcCCCCcEEEccCCcCcC-----------------cCccCcC--CCCCccEEEccCCcCCcCCChhhh
Q 003084          271 IKMIGEFPNWLLENNTKLEFLYLVNDSLAG-----------------PFRLPIH--SHKRLRFLDVSNNNFQGHIPVEIG  331 (850)
Q Consensus       271 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----------------~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~  331 (850)
                      |.+.+ +|..+ +.+++|+.|++++|.+.+                 .+|..+.  .+++|+.|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            34444 45442 455666666666666655                 3566655  777777777777777767775554


Q ss_pred             hcCCCCcEEEccCCc-Ccc-cCcccccCCC-------CCCEEEccCCcCCCCcch-HHhhcCCCCCEEEccCCccCcccc
Q 003084          332 DILPSLVYFNISMNA-LDG-SIPSSFGNVI-------FLQFLDLSNNKLTGEIPD-HLAMCCVNLEFLSLSNNSLKGHIF  401 (850)
Q Consensus       332 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  401 (850)
                      . +++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|. ..+..+++|+.|++++|.+. .+|
T Consensus       513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            4 6777777777776 665 5665544443       7777788777777 7776 23345777788888777777 555


Q ss_pred             ccccCCCCCCeeeccCCcCcccCCcCCCCCCC-CcEEECcCCCCCCCCcccccCCCC--CcEEECCCCccccCcchhc--
Q 003084          402 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS-LKGLYLNNNNLSGKIPRWLGNLKG--LQHIVMPKNHLEGPIPVEF--  476 (850)
Q Consensus       402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~--  476 (850)
                       .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++.+.+|...  
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             6777777888888888777 66666777777 888888888777 56666655543  7788888887776544221  


Q ss_pred             -c--CCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcccc----
Q 003084          477 -C--RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID----  549 (850)
Q Consensus       477 -~--~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----  549 (850)
                       .  .+++|+.|++++|.+.. +                       +...+..+++|+.|+|++|+++.+.+..+.    
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~-l-----------------------p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQK-F-----------------------PTELFATGSPISTIILSNNLMTSIPENSLKPKDG  722 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCS-C-----------------------CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred             hccccCCCcCEEEccCCcCCc-c-----------------------CHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence             1  23466677777766652 2                       221223344444444444444422211221    


Q ss_pred             ---CCCCCCEEECcCCcCccCCchhcc--CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084          550 ---GLSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  624 (850)
Q Consensus       550 ---~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (850)
                         ++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+                         
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L-------------------------  775 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS-------------------------  775 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC-------------------------
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC-------------------------
Confidence               1124555555555554 3344443  45555555555555544 23222221                         


Q ss_pred             CCchhhhhhhhhhhccccchhcchhhhhccCCeEEcc------CCccccCCCccccCCCCCCEEECcCCcCCccCcccCC
Q 003084          625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS------CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS  698 (850)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  698 (850)
                                                  ++|+.|+|+      +|++.+.+|..|.++++|+.|+|++|++ +.+|..+.
T Consensus       776 ----------------------------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          776 ----------------------------SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             ----------------------------TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ----------------------------CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence                                        245555554      4888889999999999999999999999 57787766


Q ss_pred             CCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084          699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  738 (850)
Q Consensus       699 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  738 (850)
                        ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus       827 --~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          827 --PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             --SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             --CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence              69999999999998877777777666777778877665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-40  Score=381.48  Aligned_cols=462  Identities=19%  Similarity=0.183  Sum_probs=281.5

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  186 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~  186 (850)
                      +...++++++++.++.    +|. .+.  ++|++|++++|++.+..+.+|.++++|++|++++|.++ .++...|.++++
T Consensus        30 ~~~~~~l~ls~~~L~~----ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLTH----VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCCCS----CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCCcc----CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCC
Confidence            4455778888887765    443 222  67888888888887777777888888888888888877 444336777788


Q ss_pred             CCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEE
Q 003084          187 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA  266 (850)
Q Consensus       187 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L  266 (850)
                      |++|++++|.++. .+..   .+++|+.|++++|                                              
T Consensus       102 L~~L~Ls~N~l~~-lp~~---~l~~L~~L~Ls~N----------------------------------------------  131 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISCC---PMASLRHLDLSFN----------------------------------------------  131 (562)
T ss_dssp             CCEEECTTSCCCE-ECSC---CCTTCSEEECCSS----------------------------------------------
T ss_pred             CCEEECCCCcCCc-cCcc---ccccCCEEECCCC----------------------------------------------
Confidence            8888887777652 2211   3344444444333                                              


Q ss_pred             EccCCcccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc--cEEEccCCcC--CcCCChhhhhcCC-CCcEE
Q 003084          267 ELSHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNF--QGHIPVEIGDILP-SLVYF  340 (850)
Q Consensus       267 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L  340 (850)
                           .+.+ ..|.. ++.+++|++|++++|.+.+.   .+..+++|  +.|++++|.+  ++..|..+.. +. ..-.+
T Consensus       132 -----~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l  201 (562)
T 3a79_B          132 -----DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL  201 (562)
T ss_dssp             -----CCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred             -----CccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence                 3322 12222 35677777777777776652   23333333  7777777766  5444433322 11 11134


Q ss_pred             EccCCcCcccCcc-cccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084          341 NISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH  419 (850)
Q Consensus       341 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  419 (850)
                      ++++|.+.+.++. .+..+++|+.+++++|...-.                    .+. .....+..+++|+.+++.++.
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~-~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLM-TFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------------------HHH-HHHHHHHSCSSCEEEEEEEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccc--------------------hHH-HHHHHHhccCcceEEEecCCc
Confidence            4555554433322 334455555555555531100                    000 011123334444444444333


Q ss_pred             Cccc----CCcCCCCCCCCcEEECcCCCCCCCCcccc-----cCCCCCcEEECCCCccccCcc-hhcc---CCCCCCEEe
Q 003084          420 FVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFC---RLDSLQILD  486 (850)
Q Consensus       420 l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~  486 (850)
                      +.+.    .+..+ ..++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  ..| ..+.   ...+|+.|+
T Consensus       261 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          261 TTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             ECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred             CcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence            3211    00111 12255555555555554444433     3333333333333333  111 1111   124566666


Q ss_pred             ccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084          487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG  566 (850)
Q Consensus       487 ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  566 (850)
                      +++|.+..                       ..   ....+++|+.|++++|++++..|..+.++++|+.|++++|++++
T Consensus       338 l~~n~~~~-----------------------~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          338 ISDTPFIH-----------------------MV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN  391 (562)
T ss_dssp             EESSCCCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred             ccCCCccc-----------------------cc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence            66665431                       11   12567889999999999988888888899999999999999886


Q ss_pred             CC--chhccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccc
Q 003084          567 EV--PIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI  643 (850)
Q Consensus       567 ~~--~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (850)
                      ..  |..+..+++|++|++++|++++ .++..+...                                            
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l--------------------------------------------  427 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--------------------------------------------  427 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--------------------------------------------
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--------------------------------------------
Confidence            43  4568889999999999999887 433345443                                            


Q ss_pred             hhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChh-hh
Q 003084          644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LV  722 (850)
Q Consensus       644 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~  722 (850)
                               ++|++|++++|++++..|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++ +|.. +.
T Consensus       428 ---------~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  494 (562)
T 3a79_B          428 ---------ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFD  494 (562)
T ss_dssp             ---------TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTT
T ss_pred             ---------ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHh
Confidence                     3799999999999877666554  78999999999998 567766799999999999999994 5554 89


Q ss_pred             cCCCCCEEEccCCcCcCCCCC
Q 003084          723 DLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       723 ~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      .+++|+.|++++|++.|.+|.
T Consensus       495 ~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TCTTCCCEECCSCCBCCCHHH
T ss_pred             cCCCCCEEEecCCCcCCCcch
Confidence            999999999999999988775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-39  Score=362.38  Aligned_cols=372  Identities=21%  Similarity=0.230  Sum_probs=289.2

Q ss_pred             cEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEcc
Q 003084          313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  392 (850)
Q Consensus       313 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  392 (850)
                      +.++.+++.++ .+|. .   .+++++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35677777776 6665 2   36888888888888877788888889999999999888767777777778899999999


Q ss_pred             CCccCccccccccCCCCCCeeeccCCcCcccCCc--CCCCCCCCcEEECcCCCCCCCCccc-ccCCCCCcEEECCCCccc
Q 003084          393 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLE  469 (850)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  469 (850)
                      +|.+.+..|..|.++++|++|++++|.+.+..+.  .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            9988888888888899999999999988864443  3888889999999999988776765 788899999999999888


Q ss_pred             cCcchhccCC--CCCCEEeccCCcCCCCCCCCc---------CCCcccEEEccCcccccccCccccC---CCCCCcEEEC
Q 003084          470 GPIPVEFCRL--DSLQILDISDNNISGSLPSCF---------YPLSIKQVHLSKNMLHGQLKEGTFF---NCSSLVTLDL  535 (850)
Q Consensus       470 ~~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~L  535 (850)
                      +..+..+..+  .+|+.|++++|.+.+..+..+         ..++|+.|++++|.+.+..+. .+.   ..++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence            8777777665  678889999988876544332         346788888888887765554 222   2377888888


Q ss_pred             cCCcCCCC----------cCccccC--CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccc
Q 003084          536 SYNYLNGS----------IPDWIDG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  603 (850)
Q Consensus       536 ~~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  603 (850)
                      ++|...+.          .+..+.+  .++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+.   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  323 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---  323 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence            88755432          1122222  35788888888888877788888888888888888888877776665543   


Q ss_pred             ccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEE
Q 003084          604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  683 (850)
                                                                        +|++|++++|.+++..|..|.++++|++|+
T Consensus       324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                              788888888888877777888888888888


Q ss_pred             CcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       684 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      |++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            888888877788888888888888888888876666778888888888888888888874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-38  Score=364.08  Aligned_cols=463  Identities=19%  Similarity=0.195  Sum_probs=286.8

Q ss_pred             CCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCC
Q 003084           55 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP  134 (850)
Q Consensus        55 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~  134 (850)
                      +...+++++++|.+++ +|. .+.  ++|++|++  ++|.+.+..+..+.. +++|++|++++|.+++    ++++.|.+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~L--s~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~   98 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSL--SQNSISELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF   98 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCT-TSC--TTCCEEEC--CSSCCCCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred             cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEEC--CCCCccccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence            4556899999998884 564 333  78888888  888888777777777 8888888888888875    65567888


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCc-ccccCCCCCCeEECcCCcCcCCCCcccccCCCCcc
Q 003084          135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS-SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK  213 (850)
Q Consensus       135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~  213 (850)
                      +++|++|++++|+++ .+|..  .+++|++|++++|.++ .++. ..|+++++|++|++++|.+.. .....+.++ +|+
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~  172 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS  172 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee
Confidence            888888888888888 44544  7888888888888887 4431 278888888888888888774 222233333 338


Q ss_pred             EEEccCCcc--ccccccccCCCCccceeEEEccCCCCCCcccCccccCCC-CccEEEccCCcccccCchhhhhcCCCCcE
Q 003084          214 IFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH-ELKEAELSHIKMIGEFPNWLLENNTKLEF  290 (850)
Q Consensus       214 ~L~l~~n~~--~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  290 (850)
                      .|++++|.+  .....                           ..+..+. ..-.++++.+.+.+.++...+..+++|+.
T Consensus       173 ~L~L~~n~l~~~~~~~---------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  225 (562)
T 3a79_B          173 CILLDLVSYHIKGGET---------------------------ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL  225 (562)
T ss_dssp             EEEEEESSCCCCSSSC---------------------------CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred             EEEeecccccccccCc---------------------------ccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence            888877776  33222                           1111111 01123444444444444444445555566


Q ss_pred             EEccCCcCcC----cCccCcCCCCCccEEEccCCcCCcCCChhhh--hcCCCCcEEEccCCcCcccCcccc-----cCCC
Q 003084          291 LYLVNDSLAG----PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG--DILPSLVYFNISMNALDGSIPSSF-----GNVI  359 (850)
Q Consensus       291 L~L~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~  359 (850)
                      +++++|....    .....+..+++++.++++++.+.+.......  ...++|++|++++|.+++.+|..+     ..++
T Consensus       226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~  305 (562)
T 3a79_B          226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK  305 (562)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred             ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence            6655553110    0111234556666666666655421111110  113478888888888777777766     5666


Q ss_pred             CCCEEEccCCcCCCCcchHHhhc---CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcE
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG  436 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  436 (850)
                      .|+.++++.+.+  .+|......   ..+|++|++++|.+....  ....+++|++|++++|.+.+..|..+..+++|++
T Consensus       306 ~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  381 (562)
T 3a79_B          306 SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT  381 (562)
T ss_dssp             EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred             heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence            666666666666  455322211   256777777777664322  1145666666666666666656666666666666


Q ss_pred             EECcCCCCCCCC--cccccCCCCCcEEECCCCcccc-CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCc
Q 003084          437 LYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN  513 (850)
Q Consensus       437 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  513 (850)
                      |++++|.+++..  |..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|+++                    
T Consensus       382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------------  441 (562)
T 3a79_B          382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT--------------------  441 (562)
T ss_dssp             EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC--------------------
T ss_pred             EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC--------------------
Confidence            666666665422  2345566666666666666655 22233555556666666655554                    


Q ss_pred             ccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084          514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI  592 (850)
Q Consensus       514 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  592 (850)
                         +..+. .+.  ++|+.|++++|+++ .+|..+.++++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus       442 ---~~~~~-~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          442 ---GSVFR-CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             ---GGGGS-SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             ---cchhh-hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence               33222 121  57888888888887 45555558888888888888888444434778888888888888876543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-38  Score=351.36  Aligned_cols=373  Identities=23%  Similarity=0.272  Sum_probs=318.9

Q ss_pred             CcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCcc-ccccccCCCCCCeeec
Q 003084          337 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLRNLRWLLL  415 (850)
Q Consensus       337 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l  415 (850)
                      -+.++.+++.++ .+|. +  .++|++|++++|.++ .++...+..+++|++|++++|.+.+. .+..|.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            345777777777 5565 3  378999999999999 55555556799999999999998744 4677999999999999


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCccc--ccCCCCCcEEECCCCccccCcchh-ccCCCCCCEEeccCCcC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNI  492 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ls~n~l  492 (850)
                      ++|.+.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999999888999999999999999999998755544  889999999999999999887766 88999999999999999


Q ss_pred             CCCCCCCcC---CCcccEEEccCcccccccCc-------cccCCCCCCcEEECcCCcCCCCcCccccCC---CCCCEEEC
Q 003084          493 SGSLPSCFY---PLSIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYLNGSIPDWIDGL---SQLSHLNL  559 (850)
Q Consensus       493 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L  559 (850)
                      .+..+..+.   ..+++.+++++|.+.+..+.       ..+..+++|+.|++++|++++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            988777664   37899999999998754332       113466899999999999988777766544   89999999


Q ss_pred             cCCcCccCC----------chhccC--CCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084          560 AHNNLEGEV----------PIQLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  627 (850)
Q Consensus       560 ~~n~l~~~~----------~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      ++|...+..          +..+..  .++|+.|++++|.+.+..+..+..++                           
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------  299 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT---------------------------  299 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC---------------------------
Confidence            998655321          122222  36899999999999998888776644                           


Q ss_pred             hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084          628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD  707 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  707 (850)
                                                +|++|++++|++++..|..|.++++|++|+|++|.+++..|..|+.+++|+.|+
T Consensus       300 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          300 --------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                      899999999999999899999999999999999999999899999999999999


Q ss_pred             CcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084          708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL  767 (850)
Q Consensus       708 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  767 (850)
                      +++|++++..|..+..+++|++|++++|++++..+..+..++.++.+.+++||+.|+||.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999999999987777778899999999999999999983

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5e-37  Score=338.61  Aligned_cols=161  Identities=32%  Similarity=0.447  Sum_probs=96.0

Q ss_pred             CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEE
Q 003084          310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL  389 (850)
Q Consensus       310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  389 (850)
                      ++|++|++++|.++ .++..    .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|..    ..+|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            45666666666655 23321    2467777777777764 55 4677777777777777776 45542    3467777


Q ss_pred             EccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc
Q 003084          390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  469 (850)
Q Consensus       390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  469 (850)
                      ++++|.+.+ +| .+.++++|++|++++|.+.+ +|..   .++|++|++++|.+. .+| .++.+++|++|++++|+++
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            777776665 33 46666777777777776664 3322   136666777666666 344 2566666666666666665


Q ss_pred             cCcchhccCCCCCCEEeccCCcCCC
Q 003084          470 GPIPVEFCRLDSLQILDISDNNISG  494 (850)
Q Consensus       470 ~~~~~~~~~l~~L~~L~ls~n~l~~  494 (850)
                      +. |.   ..++|+.|++++|.+.+
T Consensus       251 ~l-~~---~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          251 TL-PD---LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             SC-CS---CCTTCCEEECCSSCCSC
T ss_pred             cc-cc---cccccCEEECCCCcccc
Confidence            42 22   13556666666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=338.57  Aligned_cols=347  Identities=19%  Similarity=0.178  Sum_probs=224.8

Q ss_pred             EEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084          339 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN  418 (850)
Q Consensus       339 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  418 (850)
                      .++.+++.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444554444 3343332  34555555555555 333333344555555555555555444555555555555555555


Q ss_pred             cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCC
Q 003084          419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS  498 (850)
Q Consensus       419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  498 (850)
                      .+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.     
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----  165 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-----  165 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence            554433334445555555555555555444444555555555555555554444444455555555555554443     


Q ss_pred             CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCC
Q 003084          499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL  578 (850)
Q Consensus       499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  578 (850)
                                        + ++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|
T Consensus       166 ------------------~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          166 ------------------S-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             ------------------S-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             ------------------c-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence                              2 333367788888888888888887777778888888888888887776666666666788


Q ss_pred             CEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeE
Q 003084          579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL  658 (850)
Q Consensus       579 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  658 (850)
                      +.|++++|.+++.++..|..+                                                     ++|++|
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L  253 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRFL  253 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCEE
T ss_pred             cEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCee
Confidence            888888888876544444433                                                     378888


Q ss_pred             EccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084          659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  738 (850)
Q Consensus       659 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  738 (850)
                      +|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            88888888877788888889999999999998888888888999999999999998777778888889999999999988


Q ss_pred             CCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084          739 GKIPEWTAQFATFNKSSYDGNPFLCGLPL  767 (850)
Q Consensus       739 ~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  767 (850)
                      |.++.. ..+.......+.++...|..|.
T Consensus       334 c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          334 CDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             CccchH-hHHhhhhccccCccCceeCCch
Confidence            776541 1122233455677788887663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-35  Score=327.60  Aligned_cols=402  Identities=24%  Similarity=0.274  Sum_probs=158.1

Q ss_pred             ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEE
Q 003084          237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD  316 (850)
Q Consensus       237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  316 (850)
                      +|++|+++.+ .+ +.+|..++++++|++|++++|.+.+.+|..+ +.+++|+.+++..|..           .++++|+
T Consensus        12 ~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           12 FLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cchhhhcccC-ch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEE
Confidence            5666666333 33 5666666666666666666666666666543 3333331111111100           1124455


Q ss_pred             ccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCcc
Q 003084          317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL  396 (850)
Q Consensus       317 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  396 (850)
                      +++|.++ .+|.    ..++|++|++++|.+++ +|..   +++|++|++++|.++ .+|..    .++|++|++++|.+
T Consensus        78 l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           78 LNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQL  143 (454)
T ss_dssp             CTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCC
T ss_pred             ecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCC
Confidence            5555444 2332    12345555555555443 3322   244555555555544 23221    13455555555555


Q ss_pred             CccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhc
Q 003084          397 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF  476 (850)
Q Consensus       397 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  476 (850)
                      .+ +| .+.++++|++|++++|++.+ +|..+   ++|++|++++|.+++ +| .++.+++|++|++++|.+++. |.. 
T Consensus       144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~-  213 (454)
T 1jl5_A          144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL-  213 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC-
T ss_pred             CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC-
Confidence            43 33 34455555555555555443 22221   245555555555543 22 344555555555555554431 111 


Q ss_pred             cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCE
Q 003084          477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH  556 (850)
Q Consensus       477 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  556 (850)
                        .++|+.|++++|.+. .+|....+++|+.|++++|.+++ ++.    .+++|+.|++++|++++ +|..   +++|+.
T Consensus       214 --~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~  281 (454)
T 1jl5_A          214 --PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTF  281 (454)
T ss_dssp             --CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred             --cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCE
Confidence              134555555555544 33333334455555555555432 221    12455555555555553 2221   245555


Q ss_pred             EECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhh
Q 003084          557 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF  636 (850)
Q Consensus       557 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (850)
                      |++++|++++.. .   ..++|+.|++++|++++...     .                                     
T Consensus       282 L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~~-----~-------------------------------------  315 (454)
T 1jl5_A          282 LDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLCD-----L-------------------------------------  315 (454)
T ss_dssp             EECCSSCCSEES-C---CCTTCCEEECCSSCCSEECC-----C-------------------------------------
T ss_pred             EECcCCccCccc-C---cCCcCCEEECcCCcCCcccC-----C-------------------------------------
Confidence            555555555321 0   01455555555555543210     0                                     


Q ss_pred             hhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc-
Q 003084          637 EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG-  715 (850)
Q Consensus       637 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-  715 (850)
                                     .++|++|++++|++++ +|..   +++|+.|++++|++++ +|.   .+++|+.|++++|++++ 
T Consensus       316 ---------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          316 ---------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             ---------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC
T ss_pred             ---------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcC
Confidence                           0145556666665553 3332   3555566666665552 333   24555666666666555 


Q ss_pred             -cCChhhhcC-------------CCCCEEEccCCcCcC--CCCCCccccCCCCccccCCCCCCC
Q 003084          716 -KIPRQLVDL-------------NTLAIFIVAYNNLSG--KIPEWTAQFATFNKSSYDGNPFLC  763 (850)
Q Consensus       716 -~~p~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~~n~~~c  763 (850)
                       .+|.++..+             ++|+.|++++|++++  .+|.++      ..+.+.+|...|
T Consensus       373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~  430 (454)
T 1jl5_A          373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV------EDLRMNSERVVD  430 (454)
T ss_dssp             CCCCTTCCEEECCC--------------------------------------------------
T ss_pred             CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH------hheeCcCcccCC
Confidence             455555544             789999999999987  666543      333445555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-34  Score=321.97  Aligned_cols=346  Identities=25%  Similarity=0.354  Sum_probs=230.8

Q ss_pred             CCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEE
Q 003084          285 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL  364 (850)
Q Consensus       285 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  364 (850)
                      +++++.|++.++.+....  .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++..+  +..+++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            456666666666665421  2455666666666666665 3333  3345666666666666654333  5666666666


Q ss_pred             EccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCC
Q 003084          365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL  444 (850)
Q Consensus       365 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  444 (850)
                      ++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+++ +.+.+..  .+.++++|+.|++++|.+
T Consensus       118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            66666666 3333  34466666666666665542  135556666666664 2333221  255555666666666655


Q ss_pred             CCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCcccc
Q 003084          445 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF  524 (850)
Q Consensus       445 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  524 (850)
                      .+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.                       +.   ..+
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~---~~l  239 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------DI---GTL  239 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CC---GGG
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------cc---hhh
Confidence            432  234555555555555555554433  344555555555555443                       21   156


Q ss_pred             CCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084          525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES  604 (850)
Q Consensus       525 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  604 (850)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+..+  +..      
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------  307 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------  307 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence            778889999999998886654  7888999999999999886544  7888999999999998876543  222      


Q ss_pred             cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEEC
Q 003084          605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  684 (850)
                                                                     +++|++|++++|++++..|  +..+++|+.|++
T Consensus       308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                                           3489999999999987655  788999999999


Q ss_pred             cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084          685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK  740 (850)
Q Consensus       685 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  740 (850)
                      ++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999865  468889999999999999998777  78899999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-34  Score=316.35  Aligned_cols=335  Identities=23%  Similarity=0.220  Sum_probs=226.4

Q ss_pred             CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084          358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  437 (850)
Q Consensus       358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (850)
                      +++++.|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            456666777766666 6666666667777777777777766666667777777777777777776666667777777777


Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084          438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      ++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..  ....++|+.+++++|.+. 
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~-  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-
Confidence            77777776554445667777777777777777666666777777777777777766431  223456666666666554 


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                           .+...++|+.|++++|.+... |.  ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..|.
T Consensus       200 -----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 -----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             -----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence                 223345677777777777643 22  2246777777777777643  4567777777777777777776666555


Q ss_pred             cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084          598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT  677 (850)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  677 (850)
                      ..+                                                     +|++|++++|++++ +|..+..++
T Consensus       270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred             ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence            433                                                     67777777777774 455566777


Q ss_pred             CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084          678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD  757 (850)
Q Consensus       678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  757 (850)
                      +|+.|+|++|+++ .+|..+..+++|+.|++++|+++.. |  +..+++|+.|++++|++.|....  ..+..+....+.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  369 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  369 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence            8888888888877 4566667778888888888887744 3  56677888888888888765433  345556666677


Q ss_pred             CCCCCCCCC
Q 003084          758 GNPFLCGLP  766 (850)
Q Consensus       758 ~n~~~c~~~  766 (850)
                      +++..|.++
T Consensus       370 ~~~~~c~~~  378 (390)
T 3o6n_A          370 DADQHCKID  378 (390)
T ss_dssp             CCCSCCCTT
T ss_pred             ccCceeccc
Confidence            777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.3e-34  Score=317.43  Aligned_cols=346  Identities=25%  Similarity=0.341  Sum_probs=285.7

Q ss_pred             CCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCc
Q 003084          259 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV  338 (850)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  338 (850)
                      .+++++.|++.++.+.. +|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence            45689999999988754 554  4689999999999999998655  8899999999999999984 444  55689999


Q ss_pred             EEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084          339 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN  418 (850)
Q Consensus       339 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  418 (850)
                      +|++++|.+++. +. +..+++|++|++++|.+. .++.  +..+++|++|+++ +.+.+..  .+.++++|++|++++|
T Consensus       116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            999999999854 33 899999999999999998 5664  4569999999997 4554433  3889999999999999


Q ss_pred             cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCC
Q 003084          419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS  498 (850)
Q Consensus       419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  498 (850)
                      .+.+.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..  
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--  259 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--  259 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--
Confidence            98854  348889999999999999987655  77899999999999999864  46788999999999999876321  


Q ss_pred             CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCC
Q 003084          499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL  578 (850)
Q Consensus       499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  578 (850)
                                              .+..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|
T Consensus       260 ------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          260 ------------------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             ------------------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             ------------------------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence                                    25677888888888888886544  7788889999999988886544  7788899


Q ss_pred             CEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeE
Q 003084          579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL  658 (850)
Q Consensus       579 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  658 (850)
                      +.|++++|++++..+  +..                                                     +++|++|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L  336 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL  336 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred             CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence            999999998876654  222                                                     3479999


Q ss_pred             EccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084          659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG  715 (850)
Q Consensus       659 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  715 (850)
                      ++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999998865  468889999999999999998776  8889999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=325.01  Aligned_cols=320  Identities=22%  Similarity=0.209  Sum_probs=198.2

Q ss_pred             EEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084          314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  393 (850)
Q Consensus       314 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  393 (850)
                      .++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence            4555555554 455433   235666666666666555556666666666666666665 33333344466666666666


Q ss_pred             CccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc
Q 003084          394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP  473 (850)
Q Consensus       394 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  473 (850)
                      |.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            66665555556666666666666666666666666666666666666666666556666666677777777776666555


Q ss_pred             hhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCC
Q 003084          474 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ  553 (850)
Q Consensus       474 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  553 (850)
                      ..+..+++|+.|++++|.+.+..+                        ..|..+++|+.|++++|...+..+.......+
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRD------------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECT------------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeCh------------------------hhcccCcccceeeCCCCccccccCcccccCcc
Confidence            666677777777777766653222                        14455555666666655554444444444446


Q ss_pred             CCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhh
Q 003084          554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  633 (850)
Q Consensus       554 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (850)
                      |+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+.                                 
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------------  272 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL---------------------------------  272 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---------------------------------
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---------------------------------
Confidence            66666666666644445566666666666666666665555554433                                 


Q ss_pred             hhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084          634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  713 (850)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  713 (850)
                                          +|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus       273 --------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          273 --------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             --------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             --------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence                                667777777777766666777777777777777777766666677777777777777776


Q ss_pred             cc
Q 003084          714 SG  715 (850)
Q Consensus       714 ~~  715 (850)
                      ..
T Consensus       333 ~c  334 (477)
T 2id5_A          333 AC  334 (477)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.5e-34  Score=326.52  Aligned_cols=335  Identities=23%  Similarity=0.217  Sum_probs=242.5

Q ss_pred             CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084          358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  437 (850)
Q Consensus       358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (850)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            345666666666666 5666666666677777777777666666666677777777777777766666666677777777


Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084          438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      ++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..  ...+++|+.|++++|.+. 
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~-  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-
Confidence            77777776555555666777777777777776666666777777777777777766532  223556777777777664 


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                           .+...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+.+|..|.
T Consensus       206 -----~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 -----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             -----EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -----cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                 2344567888888888887443322   3678888888888875  35677888888888888888888777776


Q ss_pred             cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084          598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT  677 (850)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  677 (850)
                      .++                                                     +|++|+|++|.+++ +|..+..++
T Consensus       276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred             Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence            544                                                     78888888888885 466677788


Q ss_pred             CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084          678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD  757 (850)
Q Consensus       678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  757 (850)
                      +|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. |  +..+++|+.|++++|++.|..+.  ..+..+....+.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  375 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  375 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence            9999999999998 5677788889999999999998854 3  56788999999999999876544  456667777788


Q ss_pred             CCCCCCCCC
Q 003084          758 GNPFLCGLP  766 (850)
Q Consensus       758 ~n~~~c~~~  766 (850)
                      +++..|+.+
T Consensus       376 ~~~~~C~~~  384 (597)
T 3oja_B          376 DADQHCKID  384 (597)
T ss_dssp             CCCCCCCTT
T ss_pred             cccccCCcc
Confidence            888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-33  Score=311.75  Aligned_cols=358  Identities=18%  Similarity=0.155  Sum_probs=185.4

Q ss_pred             cccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCC
Q 003084          256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP  335 (850)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  335 (850)
                      .+..+++|++|+++++.+.+. | . +..+++|++|++++|.+.+.   ++..+++|++|++++|.+++ ++   +..++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~---~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD---VTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee---cCCCC
Confidence            344455555555555554432 3 1 24455555555555555442   14445555555555555442 22   22244


Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084          336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  415 (850)
Q Consensus       336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  415 (850)
                      +|++|++++|.+++ ++  ++.+++|++|++++|++++ ++   +..+++|++|++++|...+.+  .+..+++|++|++
T Consensus       107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            55555555554443 22  4444455555555554442 22   223444444444444322222  2334444444444


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  495 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  495 (850)
                      ++|++++. |  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++.
T Consensus       178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            44444431 2  33444444444444444432   13344444444444444443 12  33444444444444444332


Q ss_pred             CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084          496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  575 (850)
Q Consensus       496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  575 (850)
                      .                           +..+++|+.|+++.|              +|+.|++++|.+.+.+|  +..+
T Consensus       249 ~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l  285 (457)
T 3bz5_A          249 D---------------------------VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC  285 (457)
T ss_dssp             C---------------------------CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred             C---------------------------HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence            1                           233444555554443              23344455555444443  3445


Q ss_pred             CCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccC
Q 003084          576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  655 (850)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  655 (850)
                      ++|+.|++++|+..+.+|........                                  +++           ...++|
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~----------------------------------L~l-----------~~~~~L  320 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDCQAAGITE----------------------------------LDL-----------SQNPKL  320 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEECTTCCCSC----------------------------------CCC-----------TTCTTC
T ss_pred             ccCCEEECCCCcccceeccCCCcceE----------------------------------ech-----------hhcccC
Confidence            55666666666544443322111110                                  000           012379


Q ss_pred             CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      ++|++++|++++. +  ++++++|+.|++++|++++        ++.|+.|++++|.+.|.     ..+..|..+++++|
T Consensus       321 ~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          321 VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN  384 (457)
T ss_dssp             CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred             CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence            9999999999974 3  8899999999999999985        25677788999999876     35567788899999


Q ss_pred             cCcCCCCCCc
Q 003084          736 NLSGKIPEWT  745 (850)
Q Consensus       736 ~l~~~~p~~~  745 (850)
                      +++|.+|..+
T Consensus       385 ~l~g~ip~~~  394 (457)
T 3bz5_A          385 SLTIAVSPDL  394 (457)
T ss_dssp             BEEEECCTTC
T ss_pred             cEEEEcChhH
Confidence            9999999743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.4e-32  Score=300.24  Aligned_cols=347  Identities=18%  Similarity=0.177  Sum_probs=196.8

Q ss_pred             CcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCC
Q 003084          305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV  384 (850)
Q Consensus       305 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  384 (850)
                      .+..+++|++|++++|.+++ +| . +..+++|++|++++|.+++. |  ++.+++|++|++++|.++ .++   +..++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCT
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCC
Confidence            34445556666666665552 33 2 23355666666666665542 2  555666666666666665 233   33456


Q ss_pred             CCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECC
Q 003084          385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  464 (850)
Q Consensus       385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  464 (850)
                      +|++|++++|.+.+. +  +..+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|++|+++
T Consensus       107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS  178 (457)
T ss_dssp             TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence            666666666665542 2  55566666666666666543   2555666666666666433333  35555666666666


Q ss_pred             CCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084          465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI  544 (850)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  544 (850)
                      +|++++. |  +..+++|+.|++++|.+++.  ....+++|+.|++++|.+++ ++   +..+++|+.|++++|++++..
T Consensus       179 ~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          179 FNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             SSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence            6666542 2  45556666666666665532  11123333333333333333 21   344455555555555555432


Q ss_pred             CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084          545 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  624 (850)
Q Consensus       545 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (850)
                         ++.+++|+.|++++|              +|+.|++++|++.+..|.  .                           
T Consensus       250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~---------------------------  283 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E---------------------------  283 (457)
T ss_dssp             ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T---------------------------
T ss_pred             ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c---------------------------
Confidence               234445555554443              234455555554433321  1                           


Q ss_pred             CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc--------cccCCCCCCEEECcCCcCCccCccc
Q 003084          625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLT  696 (850)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~  696 (850)
                                                .+++|+.|++++|...+.+|.        .+.++++|+.|++++|++++. +  
T Consensus       284 --------------------------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--  334 (457)
T 3bz5_A          284 --------------------------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--  334 (457)
T ss_dssp             --------------------------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--
T ss_pred             --------------------------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--
Confidence                                      134788888888876655543        256667888899999988874 3  


Q ss_pred             CCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          697 FSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       697 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      ++.+++|+.|++++|++++        ++.|..|++++|.++|.     ..+..+....++.|.....-|
T Consensus       335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence            7888889999999998875        24566677888888875     234445556666666554444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-33  Score=292.99  Aligned_cols=260  Identities=34%  Similarity=0.547  Sum_probs=224.6

Q ss_pred             CCCcEEECcCCCCCC--CCcccccCCCCCcEEECCC-CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEE
Q 003084          432 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV  508 (850)
Q Consensus       432 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  508 (850)
                      .+++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+..|..|.++++|++|++++|.+.+              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            467777888877776  6777777778888888874 77777777777778888888877777653              


Q ss_pred             EccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC-CCCEEeCCCCc
Q 003084          509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDNN  587 (850)
Q Consensus       509 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~  587 (850)
                               .++. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus       116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     3333 677888999999999999888888899999999999999999988899999988 99999999999


Q ss_pred             CCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc
Q 003084          588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG  667 (850)
Q Consensus       588 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  667 (850)
                      +++..|..+...                                                      .|++|++++|++++
T Consensus       186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred             eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence            988877766542                                                      38999999999999


Q ss_pred             CCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccc
Q 003084          668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ  747 (850)
Q Consensus       668 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  747 (850)
                      ..|..|..+++|+.|+|++|.+++.+|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.. ..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            9999999999999999999999977665 888999999999999999999999999999999999999999999996 88


Q ss_pred             cCCCCccccCCCCCCCCCCCCCCC
Q 003084          748 FATFNKSSYDGNPFLCGLPLPICR  771 (850)
Q Consensus       748 ~~~~~~~~~~~n~~~c~~~l~~c~  771 (850)
                      ++++..+.+.+||++|+.|+.+|.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccChHHhcCCCCccCCCCCCCC
Confidence            999999999999999998887773

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-32  Score=293.99  Aligned_cols=312  Identities=22%  Similarity=0.259  Sum_probs=230.4

Q ss_pred             CCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCC
Q 003084          308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  387 (850)
Q Consensus       308 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  387 (850)
                      .+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3567788888888876 677777777788888888888887766777888888888888888877 45555555577777


Q ss_pred             EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCc
Q 003084          388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  467 (850)
Q Consensus       388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  467 (850)
                      +|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            777777777755555566777777777777777666666666777777777777776643   23445666666666665


Q ss_pred             cccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084          468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  547 (850)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  547 (850)
                      +.+.     ...++|+.|++++|.+.                       .. +.   ...++|+.|++++|.+++.  .+
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~-----------------------~~-~~---~~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSIN-----------------------VV-RG---PVNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCC-----------------------EE-EC---CCCSSCCEEECCSSCCCCC--GG
T ss_pred             cccc-----CCCCcceEEECCCCeee-----------------------ec-cc---cccccccEEECCCCCCccc--HH
Confidence            5432     22345555555555543                       22 21   2246889999999998864  57


Q ss_pred             ccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084          548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  627 (850)
Q Consensus       548 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      +..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.... +..                             
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-----------------------------  293 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQP-----------------------------  293 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSC-----------------------------
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCC-----------------------------
Confidence            88899999999999999988888999999999999999998765322 221                             


Q ss_pred             hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084          628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD  707 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  707 (850)
                                              +++|++|++++|+++ .+|..+..+++|+.|++++|+++.. +  +..+++|+.|+
T Consensus       294 ------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~  345 (390)
T 3o6n_A          294 ------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  345 (390)
T ss_dssp             ------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             ------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence                                    348999999999998 5677788999999999999999855 3  77889999999


Q ss_pred             CcCCcCccc
Q 003084          708 LSYNKLSGK  716 (850)
Q Consensus       708 Ls~N~l~~~  716 (850)
                      +++|++...
T Consensus       346 l~~N~~~~~  354 (390)
T 3o6n_A          346 LSHNDWDCN  354 (390)
T ss_dssp             CCSSCEEHH
T ss_pred             cCCCCccch
Confidence            999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1e-31  Score=287.94  Aligned_cols=304  Identities=22%  Similarity=0.347  Sum_probs=214.3

Q ss_pred             CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCee
Q 003084          334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  413 (850)
Q Consensus       334 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  413 (850)
                      +++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+...  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5678888888877763 33 3677777888888887777 4554  45577777777777777643  346777777777


Q ss_pred             eccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084          414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      ++++|.+.+..+  +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            777777764322  666777777777777554333 336667777777777776664433  566666666666666654


Q ss_pred             CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084          494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  573 (850)
Q Consensus       494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  573 (850)
                      +.                        +  .+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +.
T Consensus       191 ~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 DI------------------------S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             cc------------------------c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            21                        1  25667788888888888875543  7778888888888888875443  77


Q ss_pred             CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084          574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS  653 (850)
Q Consensus       574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  653 (850)
                      .+++|++|++++|.+++.  ..+..                                                     ++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred             cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence            788888888888877653  12222                                                     34


Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|++++|++++.  ..+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            788888888888754  457888888888888888888888888888888888888888886655  7788888888888


Q ss_pred             CCcCc
Q 003084          734 YNNLS  738 (850)
Q Consensus       734 ~N~l~  738 (850)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-31  Score=284.02  Aligned_cols=307  Identities=25%  Similarity=0.357  Sum_probs=254.1

Q ss_pred             cCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCC
Q 003084          306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN  385 (850)
Q Consensus       306 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  385 (850)
                      +..+++|++|+++++.+. .++.  +..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++.  +..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence            456889999999999997 5654  44589999999999999854 43 899999999999999998 5653  567999


Q ss_pred             CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCC
Q 003084          386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK  465 (850)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  465 (850)
                      |++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            9999999999986544  8899999999999997665444 48899999999999999986544  88999999999999


Q ss_pred             CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC
Q 003084          466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP  545 (850)
Q Consensus       466 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  545 (850)
                      |.+.+..+  +..+++|+.+++++|.+.+..                          .+..+++|++|++++|++++..+
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDIT--------------------------PVANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCc--------------------------hhhcCCcCCEEEccCCccCCCcc
Confidence            99986544  788999999999999876321                          25677888888998888886544


Q ss_pred             ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCC
Q 003084          546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ  625 (850)
Q Consensus       546 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (850)
                        +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..                           
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~---------------------------  285 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN---------------------------  285 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG---------------------------
T ss_pred             --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC---------------------------
Confidence              78889999999999988854  4688889999999999988764  12222                           


Q ss_pred             CchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCE
Q 003084          626 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES  705 (850)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  705 (850)
                                                +++|++|++++|++++..|..+..+++|+.|++++|++++..|  +..+++|+.
T Consensus       286 --------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          286 --------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             --------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             --------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence                                      3489999999999998888889999999999999999997766  888999999


Q ss_pred             EECcCCcCc
Q 003084          706 LDLSYNKLS  714 (850)
Q Consensus       706 L~Ls~N~l~  714 (850)
                      |++++|+++
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.9e-31  Score=306.54  Aligned_cols=314  Identities=21%  Similarity=0.250  Sum_probs=275.6

Q ss_pred             CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEE
Q 003084          383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV  462 (850)
Q Consensus       383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  462 (850)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            67899999999999988777889999999999999999988888999999999999999999998888999999999999


Q ss_pred             CCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC
Q 003084          463 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN  541 (850)
Q Consensus       463 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~  541 (850)
                      +++|.+++..+..|..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++.    .+..+++|+.|++++|.++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----ChhhhhhhhhhhcccCccc
Confidence            999999987777789999999999999999988887665 78999999999998754    3566889999999999887


Q ss_pred             CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccc
Q 003084          542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI  621 (850)
Q Consensus       542 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (850)
                      +     +...++|+.|++++|.+....+. +  .++|+.|++++|.+++.  ..+..                       
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~-----------------------  252 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLN-----------------------  252 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence            4     34567899999999999854332 2  37899999999998763  22322                       


Q ss_pred             cCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCC
Q 003084          622 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR  701 (850)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  701 (850)
                                                    +++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..++
T Consensus       253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                                          3489999999999999999999999999999999999996 577788899


Q ss_pred             CCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          702 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       702 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      +|+.|+|++|+++ .+|..+..+++|+.|++++|++++..   +..++.+..+.+++||+.|+|...
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~  364 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA  364 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH
Confidence            9999999999999 67888899999999999999998654   356788889999999999987543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.3e-30  Score=272.91  Aligned_cols=291  Identities=24%  Similarity=0.312  Sum_probs=218.4

Q ss_pred             CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  439 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  439 (850)
                      +++.++++++.++ .+|..+   .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4667777777666 566543   356777777777777666667777888888888888887777777888888888888


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  519 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  519 (850)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..|.++++|+.|++++|.+...                     +..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~  163 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE  163 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence            888877 3444433  6788888888888877777788888888888888877521                     111


Q ss_pred             CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccC
Q 003084          520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  599 (850)
Q Consensus       520 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  599 (850)
                       ...+..+++|+.|++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+...
T Consensus       164 -~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          164 -NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             -TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             -hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence             2266777888888888888874 343332  788888888888887778888888888888888888887776666543


Q ss_pred             ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084          600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  679 (850)
                      +                                                     +|++|++++|+++ .+|..+..+++|
T Consensus       240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence            3                                                     7888999999888 677788888999


Q ss_pred             CEEECcCCcCCccCcccCCCC------CCCCEEECcCCcCcc--cCChhhhcCCCCCEEEccCCc
Q 003084          680 QTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLSG--KIPRQLVDLNTLAIFIVAYNN  736 (850)
Q Consensus       680 ~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~  736 (850)
                      ++|++++|++++..+..|...      .+|+.|++++|++..  ..|..|..+..++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            999999999987777777543      788899999998864  567788888999999998884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3e-30  Score=274.19  Aligned_cols=288  Identities=22%  Similarity=0.289  Sum_probs=196.9

Q ss_pred             CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  439 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  439 (850)
                      .++.++++++.++ .+|..+   .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4667777777776 666554   356777777777777666667777777777777777777666777777777777777


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCC--CCCCCcCCCcccEEEccCccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG--SLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+..  ..+.                   
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------  167 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-------------------  167 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence            777776 3344333  677777777777776666667777777888777777642  2111                   


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                           .+..+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.
T Consensus       168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence                 34444 66666666666664 333222  5677777777777766666677777777777777777666555554


Q ss_pred             cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084          598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT  677 (850)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  677 (850)
                      ..+                                                     +|++|++++|+++ .+|..+..++
T Consensus       239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence            432                                                     6777777777777 5666777788


Q ss_pred             CCCEEECcCCcCCccCcccCCCC------CCCCEEECcCCcCc--ccCChhhhcCCCCCEEEccCCc
Q 003084          678 RIQTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNN  736 (850)
Q Consensus       678 ~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~  736 (850)
                      +|+.|++++|++++..+..|...      .+|+.|++++|++.  ...|.+|..+++|+.+++++|+
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88888888888877666666543      56788888888877  5677778888888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-29  Score=269.52  Aligned_cols=251  Identities=29%  Similarity=0.338  Sum_probs=162.9

Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084          336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  415 (850)
Q Consensus       336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  415 (850)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555555555554 3343332  45666666666665 444444445666666666666666666666777777777777


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc--CcchhccCCCCCCEEeccCCcCC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|+.|++++|.+.
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            777776 3444333  678888888888876666677888888888888888753  556667766 8888888888877


Q ss_pred             CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084          494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  573 (850)
Q Consensus       494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  573 (850)
                      +. |..+ .++|+.|++++|.+.+..+. .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus       186 ~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 GI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             cc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            53 3222 24666666666666544333 5666777777777777777666666667777777777777776 5555666


Q ss_pred             CCCCCCEEeCCCCcCCccCCCCccc
Q 003084          574 RLNQLQLLDLSDNNLHGLIPSCFDN  598 (850)
Q Consensus       574 ~l~~L~~L~Ls~n~l~~~~~~~~~~  598 (850)
                      .+++|+.|++++|++++..+..|..
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             cCccCCEEECCCCCCCccChhHccc
Confidence            6777777777777766665555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.2e-29  Score=265.22  Aligned_cols=251  Identities=23%  Similarity=0.333  Sum_probs=155.5

Q ss_pred             CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEE
Q 003084          311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  390 (850)
Q Consensus       311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  390 (850)
                      +++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.+                         +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~-------------------------l~~L~~L~   82 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKN-------------------------LKNLHTLI   82 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTT-------------------------CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhcc-------------------------CCCCCEEE
Confidence            5566666666555 444432   234555555555554443334444                         45555555


Q ss_pred             ccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 003084          391 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG  470 (850)
Q Consensus       391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  470 (850)
                      +++|.+.+..|..|.++++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             CCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             CCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            5555555444555566666666666666665 3333332  567777777777776666667777777777777777743


Q ss_pred             --CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccc
Q 003084          471 --PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI  548 (850)
Q Consensus       471 --~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  548 (850)
                        ..+..+..+++|+.|++++|.+... |... .++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhc
Confidence              5566777788888888888877643 2222 15566666666666544333 66677777777777777776666667


Q ss_pred             cCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          549 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       549 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                      ..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            77777777777777776 5566666677777777777777666555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.8e-33  Score=311.96  Aligned_cols=185  Identities=19%  Similarity=0.167  Sum_probs=132.9

Q ss_pred             CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCC-
Q 003084          310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV-  384 (850)
Q Consensus       310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  384 (850)
                      ++|++|++++|.++......++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5678888888887744444445667889999999988874    34566777888999999999887545555665566 


Q ss_pred             ---CCCEEEccCCccCc----cccccccCCCCCCeeeccCCcCcccCCcC-----CCCCCCCcEEECcCCCCCCCC----
Q 003084          385 ---NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQS-----LSKCSSLKGLYLNNNNLSGKI----  448 (850)
Q Consensus       385 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~----  448 (850)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+....+..     ....++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998874    44777888888999999888876432222     223567888888888887543    


Q ss_pred             cccccCCCCCcEEECCCCccccCcchhcc-----CCCCCCEEeccCCcCCC
Q 003084          449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFC-----RLDSLQILDISDNNISG  494 (850)
Q Consensus       449 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~  494 (850)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+++
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            44556678888888888887654444433     35578888888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=4.7e-31  Score=277.03  Aligned_cols=251  Identities=30%  Similarity=0.503  Sum_probs=166.5

Q ss_pred             CCCeeeccCCcCcc--cCCcCCCCCCCCcEEECcC-CCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEE
Q 003084          409 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  485 (850)
Q Consensus       409 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  485 (850)
                      +++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            44455555555544  4455555555555555553 55555555555555555555555555555555556666666666


Q ss_pred             eccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCC-CCCEEECcCCcC
Q 003084          486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS-QLSHLNLAHNNL  564 (850)
Q Consensus       486 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  564 (850)
                      ++++|.+.+..|                       . .+..+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus       131 ~Ls~N~l~~~~p-----------------------~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLP-----------------------P-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCC-----------------------G-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCC-----------------------h-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            666665543222                       1 445555666666666666555566666665 666777777766


Q ss_pred             ccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccch
Q 003084          565 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  644 (850)
Q Consensus       565 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (850)
                      .+..|..+..++ |++|++++|.+++..|..|...+                                            
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------  221 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence            666666666665 77777777777666555554433                                            


Q ss_pred             hcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC
Q 003084          645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL  724 (850)
Q Consensus       645 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  724 (850)
                               +|++|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|++++|++++.+|.. ..+
T Consensus       222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                     677777777777765554 777888899999999888888888888899999999999998888876 788


Q ss_pred             CCCCEEEccCCc-CcC
Q 003084          725 NTLAIFIVAYNN-LSG  739 (850)
Q Consensus       725 ~~L~~L~l~~N~-l~~  739 (850)
                      ++|+.+++++|+ ++|
T Consensus       291 ~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGSCGGGTCSSSEEES
T ss_pred             cccChHHhcCCCCccC
Confidence            889999999998 554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.7e-33  Score=309.92  Aligned_cols=309  Identities=18%  Similarity=0.125  Sum_probs=184.6

Q ss_pred             CccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCc----CccCcCCCCCccEEEccCCcCCcCCChhhhhcCC--
Q 003084          262 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP----FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP--  335 (850)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~--  335 (850)
                      ++++|+++++.+.......++..+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..++..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4666677766665554444456777888888888877642    2444667788888888888887544555555555  


Q ss_pred             --CCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcCCCCcchHHhh----cCCCCCEEEccCCccCccc----c
Q 003084          336 --SLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----CCVNLEFLSLSNNSLKGHI----F  401 (850)
Q Consensus       336 --~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----~  401 (850)
                        +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.+.+..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              68899999988874    45777888888999999988876433333322    2456888888888777533    4


Q ss_pred             ccccCCCCCCeeeccCCcCcccCCcCCC-----CCCCCcEEECcCCCCCCC----CcccccCCCCCcEEECCCCccccCc
Q 003084          402 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLEGPI  472 (850)
Q Consensus       402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~  472 (850)
                      ..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            4455667777777777776543222222     244677777777766643    2444555666666666666655322


Q ss_pred             -----chhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084          473 -----PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  547 (850)
Q Consensus       473 -----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  547 (850)
                           +..+..+++|+.|++++|.+++...                   ..++. .+..+++|++|++++|.+++..+..
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHHH
Confidence                 1112235555555555555432100                   00122 3444566666666666654332222


Q ss_pred             cc-----CCCCCCEEECcCCcCccC----CchhccCCCCCCEEeCCCCcCCc
Q 003084          548 ID-----GLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHG  590 (850)
Q Consensus       548 ~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~  590 (850)
                      +.     ..++|+.|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            22     224666666666666543    23444455666666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.7e-28  Score=254.23  Aligned_cols=275  Identities=21%  Similarity=0.270  Sum_probs=189.5

Q ss_pred             CeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC--cchhccCCCCCCEEecc
Q 003084          411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDIS  488 (850)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls  488 (850)
                      +.++.+++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            34555555555 3343332  4667777777776654444566667777777777766532  24555566677777777


Q ss_pred             CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccC
Q 003084          489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGE  567 (850)
Q Consensus       489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  567 (850)
                      +|.+.+                        ++. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus        87 ~n~i~~------------------------l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           87 FNGVIT------------------------MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             SCSEEE------------------------EEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCcccc------------------------Chh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence            666541                        222 45667777777777777775544 4677778888888888888777


Q ss_pred             CchhccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084          568 VPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  646 (850)
Q Consensus       568 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (850)
                      .+..+..+++|++|++++|.+.+ ..|..+...                                               
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----------------------------------------------  174 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-----------------------------------------------  174 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-----------------------------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhC-----------------------------------------------
Confidence            77777778888888888887765 455555443                                               


Q ss_pred             chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-
Q 003084          647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-  725 (850)
Q Consensus       647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-  725 (850)
                            ++|++|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ 
T Consensus       175 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          175 ------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             ------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence                  3788888888888877788888888888999988888877777888888899999999998888888888884 


Q ss_pred             CCCEEEccCCcCcCCCCC-Cc-cccCCCCccccCCCCCCCCCC
Q 003084          726 TLAIFIVAYNNLSGKIPE-WT-AQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       726 ~L~~L~l~~N~l~~~~p~-~~-~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|++|++++|+++|.++. ++ .++..........+...|..|
T Consensus       249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          249 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             TCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             cCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            889999999988876542 11 222233334445556666433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.4e-27  Score=262.15  Aligned_cols=252  Identities=21%  Similarity=0.240  Sum_probs=196.6

Q ss_pred             CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084          410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD  489 (850)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  489 (850)
                      .+.++..+..+. .+|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|+.|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456677776666 4555443  5677788888887766667777777888888888777776677777777777777777


Q ss_pred             CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-cCccCC
Q 003084          490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGEV  568 (850)
Q Consensus       490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~  568 (850)
                      |++++                        ++...|..+++|++|++++|.++...+..|.++++|+.|++++| .+....
T Consensus       122 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            77652                        33336778889999999999988777778888999999999884 455445


Q ss_pred             chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084          569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ  648 (850)
Q Consensus       569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (850)
                      +..|.++++|++|++++|.++..+.  +..                                                  
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------------------------------------  205 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLREIPN--LTP--------------------------------------------------  205 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSSCCC--CTT--------------------------------------------------
T ss_pred             cchhhcccccCeecCCCCcCccccc--cCC--------------------------------------------------
Confidence            5578888999999999998875431  222                                                  


Q ss_pred             hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084          649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA  728 (850)
Q Consensus       649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  728 (850)
                         +++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+
T Consensus       206 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          206 ---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             ---CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ---CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence               34788999999999888888888999999999999999888888888899999999999999877778888889999


Q ss_pred             EEEccCCcCcCCCCC
Q 003084          729 IFIVAYNNLSGKIPE  743 (850)
Q Consensus       729 ~L~l~~N~l~~~~p~  743 (850)
                      .|++++|++.|.+..
T Consensus       283 ~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDI  297 (440)
T ss_dssp             EEECCSSCEECSSTT
T ss_pred             EEEcCCCCccCCCCc
Confidence            999999988876653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.2e-27  Score=262.14  Aligned_cols=252  Identities=21%  Similarity=0.198  Sum_probs=194.1

Q ss_pred             CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084          410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD  489 (850)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  489 (850)
                      ...++.++..++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|+.|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            455666666665 3454443  4677777777777766666777777777777777777766666777777777777777


Q ss_pred             CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-cCccCC
Q 003084          490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGEV  568 (850)
Q Consensus       490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~  568 (850)
                      |.+++                        ++...|..+++|++|++++|+++...+..|.++++|+.|++++| .+....
T Consensus       133 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            76652                        33336788889999999999998777778889999999999884 555445


Q ss_pred             chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084          569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ  648 (850)
Q Consensus       569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (850)
                      +..|.++++|++|++++|.+++..  .+..                                                  
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~--------------------------------------------------  216 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDMP--NLTP--------------------------------------------------  216 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSCC--CCTT--------------------------------------------------
T ss_pred             hhhccCCCCCCEEECCCCcccccc--cccc--------------------------------------------------
Confidence            557888999999999999887642  1222                                                  


Q ss_pred             hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084          649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA  728 (850)
Q Consensus       649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  728 (850)
                         +++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+
T Consensus       217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence               34789999999999888888899999999999999999988888899999999999999999877778888889999


Q ss_pred             EEEccCCcCcCCCCC
Q 003084          729 IFIVAYNNLSGKIPE  743 (850)
Q Consensus       729 ~L~l~~N~l~~~~p~  743 (850)
                      .|++++|++.|.+..
T Consensus       294 ~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EEECCSSCEECSTTT
T ss_pred             EEEccCCCcCCCCCc
Confidence            999999998877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.9e-28  Score=259.49  Aligned_cols=283  Identities=21%  Similarity=0.211  Sum_probs=180.1

Q ss_pred             CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084          358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  437 (850)
Q Consensus       358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (850)
                      ++.....+++++.++ .+|..+   .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444556777777777 777654   3577788888887776666677777777777777777776666677777777777


Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCCc-CCCCCCCCcCCCcccEEEccCccc
Q 003084          438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNML  515 (850)
Q Consensus       438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~L~~L~l~~n~~  515 (850)
                      ++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|+.|++++|. +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            777777775555556677777777777777764433 356666666666666663 32                      


Q ss_pred             ccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCC
Q 003084          516 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC  595 (850)
Q Consensus       516 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  595 (850)
                        .++...+.++++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence              222225666777777777777777666777777777777777777776433333445677777777777766543332


Q ss_pred             cccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccC
Q 003084          596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN  675 (850)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  675 (850)
                      +..                                                                          ...
T Consensus       242 l~~--------------------------------------------------------------------------~~~  247 (353)
T 2z80_A          242 LST--------------------------------------------------------------------------GET  247 (353)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ccc--------------------------------------------------------------------------ccc
Confidence            211                                                                          011


Q ss_pred             CCCCCEEECcCCcCCc----cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          676 LTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       676 l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      .+.++.++|+++.+++    .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|++.|.+|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            2334444444444433    245566666777777777777763333335677777777777777777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.9e-28  Score=260.32  Aligned_cols=257  Identities=20%  Similarity=0.214  Sum_probs=158.7

Q ss_pred             CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084          433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  512 (850)
Q Consensus       433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  512 (850)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++                  
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------  114 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------------------  114 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------------------
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------------------
Confidence            45555555555554444455555555555555555555445555555555555555555542                  


Q ss_pred             cccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCC-cCccCCchhccCCCCCCEEeCCCCcCCc
Q 003084          513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHG  590 (850)
Q Consensus       513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  590 (850)
                            ++...+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+.++++|++|++++|.+++
T Consensus       115 ------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          115 ------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             ------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence                  111134445555555555555553322 34555555555555555 3444444555556666666666666655


Q ss_pred             cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC
Q 003084          591 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP  670 (850)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  670 (850)
                      ..|..+...+                                                     +|++|++++|+++...+
T Consensus       189 ~~~~~l~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          189 YEPKSLKSIQ-----------------------------------------------------NVSHLILHMKQHILLLE  215 (353)
T ss_dssp             ECTTTTTTCS-----------------------------------------------------EEEEEEEECSCSTTHHH
T ss_pred             cCHHHHhccc-----------------------------------------------------cCCeecCCCCccccchh
Confidence            5555444432                                                     56666666666653322


Q ss_pred             ccccCCCCCCEEECcCCcCCccCcccC---CCCCCCCEEECcCCcCcc----cCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          671 PQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ..+..+++|+.|++++|.+++..+..+   .....++.++++++.+++    .+|..+..+++|+.|++++|+++...+.
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~  295 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG  295 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH
Confidence            334456677777777777766544433   246778999999999887    4788899999999999999999954444


Q ss_pred             CccccCCCCccccCCCCCCCCCC
Q 003084          744 WTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       744 ~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      .+..++.+..+.+++||+.|+||
T Consensus       296 ~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          296 IFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcCCCCCEEEeeCCCccCcCC
Confidence            35788999999999999999997

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.1e-27  Score=247.99  Aligned_cols=256  Identities=23%  Similarity=0.302  Sum_probs=216.7

Q ss_pred             CcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCc
Q 003084          434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN  513 (850)
Q Consensus       434 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  513 (850)
                      -+.++.+++.++ .+|..+.  +++++|++++|.++...+..|.++++|+.|++++|.+...                  
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------   67 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------   67 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------------------
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------------------
Confidence            357788888877 4454443  6788888888888866666678888888888888876521                  


Q ss_pred             ccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhccCCCCCCEEeCCCCcCCccC
Q 003084          514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLI  592 (850)
Q Consensus       514 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~  592 (850)
                         +..+. .+..+++|++|++++|.++ ..|..+.++++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..
T Consensus        68 ---~~~~~-~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           68 ---GCCSQ-SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             ---EEEEH-HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             ---cCccc-ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence               11122 4557899999999999998 456779999999999999999997665 67899999999999999998887


Q ss_pred             CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc-CCCc
Q 003084          593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPP  671 (850)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~  671 (850)
                      +..+...+                                                     +|++|++++|.+++ ..|.
T Consensus       143 ~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A          143 NGIFNGLS-----------------------------------------------------SLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             TTTTTTCT-----------------------------------------------------TCCEEECTTCEEGGGEECS
T ss_pred             hhhcccCc-----------------------------------------------------CCCEEECCCCccccccchh
Confidence            77776544                                                     89999999999986 5788


Q ss_pred             cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcccc-CC
Q 003084          672 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF-AT  750 (850)
Q Consensus       672 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~  750 (850)
                      .+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..+ ..
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence            99999999999999999999889999999999999999999998888899999999999999999999999888777 48


Q ss_pred             CCccccCCCCCCCCCCCC
Q 003084          751 FNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       751 ~~~~~~~~n~~~c~~~l~  768 (850)
                      +..+.+++||+.|+|+..
T Consensus       250 L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          250 LAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CCEEECTTCCEECSGGGH
T ss_pred             CCEEEccCCCeecccChH
Confidence            899999999999999753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=254.46  Aligned_cols=227  Identities=29%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             CCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEec
Q 003084          408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI  487 (850)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  487 (850)
                      ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|+.|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34455555555555444444555555555555555554444444555555555555555554444444445555555555


Q ss_pred             cCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCC-cCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084          488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGSIPDWIDGLSQLSHLNLAHNNLEG  566 (850)
Q Consensus       488 s~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~  566 (850)
                      ++|.+..                        ++...|..+++|+.|++++| .+....+..|.++++|++|++++|+++.
T Consensus       144 ~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          144 RNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            5544431                        11123444455555555542 2222222344455555555555555542


Q ss_pred             CCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084          567 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  646 (850)
Q Consensus       567 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (850)
                       +| .+..+++|+.|++++|++++..+..|..+.                                              
T Consensus       200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------------------  231 (440)
T 3zyj_A          200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----------------------------------------------  231 (440)
T ss_dssp             -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT----------------------------------------------
T ss_pred             -cc-ccCCCcccCEEECCCCccCccChhhhccCc----------------------------------------------
Confidence             22 244445555555555555544444443322                                              


Q ss_pred             chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084          647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  713 (850)
Q Consensus       647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  713 (850)
                             +|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       232 -------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          232 -------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             -------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             -------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence                   455555555555544444455555555555555555544444445555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.1e-26  Score=255.43  Aligned_cols=247  Identities=24%  Similarity=0.247  Sum_probs=155.6

Q ss_pred             CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCC
Q 003084          386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK  465 (850)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  465 (850)
                      ...++.++..+.. +|..+.  +++++|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3456666555552 333332  4666777777776666666666667777777777766666666666667777777777


Q ss_pred             CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcC-CcCCCCc
Q 003084          466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSI  544 (850)
Q Consensus       466 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~  544 (850)
                      |.+++..+..|..+++|++|++++|.+..                        ++...|..+++|+.|++++ +.+....
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence            76666555566666666666666666542                        2222556666677777766 3343333


Q ss_pred             CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084          545 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  624 (850)
Q Consensus       545 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (850)
                      +..|.++++|+.|++++|++++. | .+..+++|+.|++++|.+++..+..|..+.                        
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------  242 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS------------------------  242 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc------------------------
Confidence            34566666777777777766643 2 355666677777777766666655555433                        


Q ss_pred             CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCC
Q 003084          625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE  704 (850)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  704 (850)
                                                   +|++|++++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus       243 -----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          243 -----------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             -----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             -----------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence                                         666777777777666666666667777777777777666666666667777


Q ss_pred             EEECcCCcCc
Q 003084          705 SLDLSYNKLS  714 (850)
Q Consensus       705 ~L~Ls~N~l~  714 (850)
                      .|+|++|++.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            7777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.2e-26  Score=240.78  Aligned_cols=251  Identities=24%  Similarity=0.246  Sum_probs=159.9

Q ss_pred             cEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcc
Q 003084          435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM  514 (850)
Q Consensus       435 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  514 (850)
                      +.++.+++.++ .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+.+..                  
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------   72 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------   72 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC------------------
Confidence            34555555554 223222  245556666666555555555555666666666665554221                  


Q ss_pred             cccccCccccCCCCCCcEEECcCCc-CCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCC
Q 003084          515 LHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  593 (850)
Q Consensus       515 ~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  593 (850)
                           + ..|..+++|++|++++|. ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        73 -----~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           73 -----A-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             -----T-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----H-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence                 1 145566666666666665 555556666667777777777777766666666677777777777777766555


Q ss_pred             CCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccc
Q 003084          594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI  673 (850)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  673 (850)
                      ..|...+                                                     +|++|++++|++++..+..|
T Consensus       147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A          147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred             hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence            5554433                                                     67777777777776666667


Q ss_pred             cCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCc
Q 003084          674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNK  753 (850)
Q Consensus       674 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~  753 (850)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++.. ..+..+..
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~  252 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence            77888888888888888777788888888888888888888766677888888888888888887766541 11122333


Q ss_pred             cccCCCCCCCCCC
Q 003084          754 SSYDGNPFLCGLP  766 (850)
Q Consensus       754 ~~~~~n~~~c~~~  766 (850)
                      .....+...|..|
T Consensus       253 ~~~~~~~~~c~~p  265 (285)
T 1ozn_A          253 FRGSSSEVPCSLP  265 (285)
T ss_dssp             CCSEECCCBEEES
T ss_pred             cccccCccccCCc
Confidence            3344555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=6.7e-29  Score=286.94  Aligned_cols=431  Identities=17%  Similarity=0.130  Sum_probs=226.3

Q ss_pred             cccCCCCCCCEEEcCCCCCc-----------c---cchhhhh-ccCCCCcEEeCCCCcCCCcccCCcCCC-CC-cccEEe
Q 003084           25 QELHNFTNLEYLTLDDSSLH-----------I---SLLQSIG-SIFPSLKNLSMSGCEVNGVLSGQGFPH-FK-SLEHLD   87 (850)
Q Consensus        25 ~~~~~l~~L~~L~Ls~n~i~-----------~---~~~~~l~-~~~~~L~~L~Ls~~~~~~~~~~~~~~~-l~-~L~~L~   87 (850)
                      ..+.++++|++|+++++...           +   .....+. . +++|++|+|++|.+.+..+. .+.+ ++ +|++|+
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHH-CTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhh-CCCCCeEEeeccEecHHHHH-HHHHhccccCcEEE
Confidence            44566777777777664211           0   0112222 4 78888888888877654332 3443 33 488888


Q ss_pred             cccCCcc-cccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc----cccCccccCCCCC
Q 003084           88 MRFARIA-LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSL  162 (850)
Q Consensus        88 L~~~~~~-~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L  162 (850)
                      +  .+|. +.......+...+++|++|++++|.+.+.+....+.....+++|++|++++|.+.    ..++..+.++++|
T Consensus       145 L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          145 L--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             E--ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             C--cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            8  5554 3322223333338888888888887755222211123456788888888888876    3445556778888


Q ss_pred             CEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCc--CCCCcccccCCCCccEEEccCCccccccccccCCCCccceeE
Q 003084          163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS  240 (850)
Q Consensus       163 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  240 (850)
                      ++|++++|.+. .++. .+..+++|++|+++.....  .......+..+++|+.++++.+....                
T Consensus       223 ~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----------------  284 (592)
T 3ogk_B          223 VSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE----------------  284 (592)
T ss_dssp             CEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT----------------
T ss_pred             cEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH----------------
Confidence            88888888887 5665 7888888888888753222  11222345667777777776542211                


Q ss_pred             EEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccC-
Q 003084          241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN-  319 (850)
Q Consensus       241 L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~-  319 (850)
                                  +|..+..+++|++|++++|.+.+.....++..+++|++|+++++......+.....+++|++|++++ 
T Consensus       285 ------------l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g  352 (592)
T 3ogk_B          285 ------------MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG  352 (592)
T ss_dssp             ------------GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             ------------HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence                        2223333344444444444433322222234444444444442111111111123344455555552 


Q ss_pred             ----------CcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccC-CCCCCEEEcc----CCcCCCC-----cchHH
Q 003084          320 ----------NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN-VIFLQFLDLS----NNKLTGE-----IPDHL  379 (850)
Q Consensus       320 ----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~  379 (850)
                                +.+++.....+...+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.     ++. .
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~  431 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-L  431 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-H
T ss_pred             ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-H
Confidence                      23332212222333556666666555555444444433 5556666664    4445421     111 2


Q ss_pred             hhcCCCCCEEEccCCc--cCcccccccc-CCCCCCeeeccCCcCccc-CCcCCCCCCCCcEEECcCCCCCCC-CcccccC
Q 003084          380 AMCCVNLEFLSLSNNS--LKGHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGN  454 (850)
Q Consensus       380 ~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~  454 (850)
                      +.++++|++|++++|.  +.+.....+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. .+.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3346666666665432  4433333332 356666666666666542 233345566677777776665432 2223345


Q ss_pred             CCCCcEEECCCCccccCcchhc-cCCCCCCEEeccCC
Q 003084          455 LKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDN  490 (850)
Q Consensus       455 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n  490 (850)
                      +++|++|++++|+++......+ ..++.+....+..+
T Consensus       512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            6667777777776654433322 24555555544443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.2e-26  Score=238.63  Aligned_cols=254  Identities=22%  Similarity=0.224  Sum_probs=196.5

Q ss_pred             CeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCC
Q 003084          411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN  490 (850)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  490 (850)
                      +.++.+++.+. .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45666666665 344433  357888888888887666677788888888888888887777778888888888888888


Q ss_pred             c-CCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc
Q 003084          491 N-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP  569 (850)
Q Consensus       491 ~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  569 (850)
                      . +...                        +...+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+
T Consensus        91 ~~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           91 AQLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             TTCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence            6 5422                        22256777888888888888887777788888888888888888887777


Q ss_pred             hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchh
Q 003084          570 IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG  649 (850)
Q Consensus       570 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  649 (850)
                      ..+..+++|++|++++|++++..+..|....                                                 
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------  177 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------------------------------------------  177 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------------------------------
Confidence            7788888999999999988877766665533                                                 


Q ss_pred             hhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCE
Q 003084          650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI  729 (850)
Q Consensus       650 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  729 (850)
                          +|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.
T Consensus       178 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~  252 (285)
T 1ozn_A          178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (285)
T ss_dssp             ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             ----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence                7999999999999888889999999999999999999887788999999999999999988644321 11233455


Q ss_pred             EEccCCcCcCCCCCCc
Q 003084          730 FIVAYNNLSGKIPEWT  745 (850)
Q Consensus       730 L~l~~N~l~~~~p~~~  745 (850)
                      +..+.+.+.|..|..+
T Consensus       253 ~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          253 FRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             CCSEECCCBEEESGGG
T ss_pred             cccccCccccCCchHh
Confidence            5577888888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=7.5e-29  Score=286.52  Aligned_cols=426  Identities=13%  Similarity=0.117  Sum_probs=263.2

Q ss_pred             hhhccCCCCcEEeCCCCcCC---CcccCCcCC------------CCCcccEEecccCCcccccchhhHhhhcCCC-CcEE
Q 003084           50 SIGSIFPSLKNLSMSGCEVN---GVLSGQGFP------------HFKSLEHLDMRFARIALNTSFLQIIGESMPS-LKYL  113 (850)
Q Consensus        50 ~l~~~~~~L~~L~Ls~~~~~---~~~~~~~~~------------~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~-L~~L  113 (850)
                      .+.. +++|++|++++|...   +.+|. .+.            ++++|++|+|  +++.+++..+..+...+++ |++|
T Consensus        68 ~~~~-~~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~L~~L~L--~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           68 LSRR-FPNLRSLKLKGKPRAAMFNLIPE-NWGGYVTPWVTEISNNLRQLKSVHF--RRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHH-CTTCSEEEEECSCGGGGGTCSCT-TSCCBCHHHHHHHHHHCTTCCEEEE--ESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             HHHh-CCCCeEEEecCCcchhhcccccc-cccccchHHHHHHHhhCCCCCeEEe--eccEecHHHHHHHHHhccccCcEE
Confidence            4445 888888888776431   12221 111            6788888888  6777777666666653344 8888


Q ss_pred             EccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCc----CCCCcccccCC
Q 003084          114 SLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLT----GSISSSPLVHL  184 (850)
Q Consensus       114 ~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~----~~i~~~~~~~l  184 (850)
                      ++++|. +..  ..+ ......+++|++|+|++|.+.+.    ++..+.++++|++|++++|.++    +.++. .+.++
T Consensus       144 ~L~~~~~~~~--~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~  219 (592)
T 3ogk_B          144 KLDKCSGFTT--DGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNC  219 (592)
T ss_dssp             EEESCEEEEH--HHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHC
T ss_pred             ECcCCCCcCH--HHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhC
Confidence            888876 111  011 11223678888888888877654    3334567788888888888875    12222 34577


Q ss_pred             CCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCcc
Q 003084          185 TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK  264 (850)
Q Consensus       185 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~  264 (850)
                      ++|++|++++|.+.+ .+ ..+..+++|+.++++.......                        ....+..+..+++|+
T Consensus       220 ~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~------------------------~~~~~~~l~~~~~L~  273 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIG------------------------MPEKYMNLVFPRKLC  273 (592)
T ss_dssp             TTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTT------------------------CTTSSSCCCCCTTCC
T ss_pred             CCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccc------------------------hHHHHHHhhcccccc
Confidence            888888888887764 22 4466778888888765321100                        011223345566777


Q ss_pred             EEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCc-cCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEcc
Q 003084          265 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS  343 (850)
Q Consensus       265 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  343 (850)
                      .++++++. ...+|.. +..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|+++
T Consensus       274 ~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          274 RLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             EEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            77776642 2333433 4677888888888887654332 225678888888888 444333333444557788888888


Q ss_pred             C-----------CcCccc-CcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEcc----CCccCcc-----ccc
Q 003084          344 M-----------NALDGS-IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS----NNSLKGH-----IFS  402 (850)
Q Consensus       344 ~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~----~n~l~~~-----~~~  402 (850)
                      +           +.+++. .+.....+++|++|+++.|.+++..+..+...+++|+.|+++    .|.+++.     ++.
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            3           444432 222234578888888888887766666666568888888886    4556542     333


Q ss_pred             cccCCCCCCeeeccCCc--CcccCCcCC-CCCCCCcEEECcCCCCCCC-CcccccCCCCCcEEECCCCccccCc-chhcc
Q 003084          403 RIFSLRNLRWLLLEGNH--FVGEIPQSL-SKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPI-PVEFC  477 (850)
Q Consensus       403 ~~~~l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~  477 (850)
                      .+.++++|++|+++.|.  +++..+..+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. +..+.
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            35667888888887543  443322222 2467888888888887652 3445567788888888888876442 33345


Q ss_pred             CCCCCCEEeccCCcCCCCCCCCc--CCCcccEEEccC
Q 003084          478 RLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSK  512 (850)
Q Consensus       478 ~l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~  512 (850)
                      .+++|+.|++++|++++.....+  ..+.+....+..
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            67888888888888765433222  244454444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-27  Score=251.03  Aligned_cols=246  Identities=21%  Similarity=0.201  Sum_probs=169.9

Q ss_pred             CCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084          431 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL  510 (850)
Q Consensus       431 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l  510 (850)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..    ..++|+.|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence            3344444444444444444444444444444444444443322  444445555555555444221    1244555555


Q ss_pred             cCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc-CCCCCCEEeCCCCcCC
Q 003084          511 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLH  589 (850)
Q Consensus       511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~  589 (850)
                      ++|.+++..+    ..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.++
T Consensus       107 ~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            5555543322    2367899999999999987777888899999999999999877776664 6899999999999987


Q ss_pred             ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC
Q 003084          590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  669 (850)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  669 (850)
                      +..+..+                                                       +++|++|++++|++++. 
T Consensus       183 ~~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~l-  206 (317)
T 3o53_A          183 DVKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFM-  206 (317)
T ss_dssp             EEECCCC-------------------------------------------------------CTTCCEEECCSSCCCEE-
T ss_pred             ccccccc-------------------------------------------------------cccCCEEECCCCcCCcc-
Confidence            6532221                                                       23799999999999854 


Q ss_pred             CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc-ccCChhhhcCCCCCEEEccCC-cCcCCCCC
Q 003084          670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVAYN-NLSGKIPE  743 (850)
Q Consensus       670 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~p~  743 (850)
                      |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+++++| .+.|..|.
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            445889999999999999998 46778889999999999999998 778888899999999998854 56665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1e-25  Score=237.69  Aligned_cols=235  Identities=22%  Similarity=0.316  Sum_probs=152.4

Q ss_pred             CCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEe
Q 003084          407 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD  486 (850)
Q Consensus       407 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  486 (850)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467888888888887 66777777888888888888888 77777888888888888888887 5677788888888888


Q ss_pred             ccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084          487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG  566 (850)
Q Consensus       487 ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  566 (850)
                      +++|++.+.+|..+..     .         ... +.+.++++|+.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            8887776555442210     0         000 12334444555555554444 334444444444444444444442


Q ss_pred             CCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084          567 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  646 (850)
Q Consensus       567 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (850)
                       +|..+..++                                                                      
T Consensus       221 -l~~~l~~l~----------------------------------------------------------------------  229 (328)
T 4fcg_A          221 -LGPAIHHLP----------------------------------------------------------------------  229 (328)
T ss_dssp             -CCGGGGGCT----------------------------------------------------------------------
T ss_pred             -CchhhccCC----------------------------------------------------------------------
Confidence             222333333                                                                      


Q ss_pred             chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084          647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT  726 (850)
Q Consensus       647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  726 (850)
                             +|++|++++|++.+.+|..|+.+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|+.+.++++
T Consensus       230 -------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          230 -------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                   5555666666555566666666777777777777766667766777777777777777777777777777777


Q ss_pred             CCEEEccCCcCc
Q 003084          727 LAIFIVAYNNLS  738 (850)
Q Consensus       727 L~~L~l~~N~l~  738 (850)
                      |+.+++..|.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            777776655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.4e-25  Score=234.83  Aligned_cols=226  Identities=20%  Similarity=0.236  Sum_probs=182.5

Q ss_pred             CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEE
Q 003084          383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV  462 (850)
Q Consensus       383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  462 (850)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            578999999999998 67777888999999999999999 78888999999999999999999 7788999999999999


Q ss_pred             CCCCccccCcchhccC---------CCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEE
Q 003084          463 MPKNHLEGPIPVEFCR---------LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL  533 (850)
Q Consensus       463 l~~n~l~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  533 (850)
                      +++|.+.+..|..+..         +++|+.|++++|.++                        .+|. .+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~-~l~~l~~L~~L  211 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPA-SIANLQNLKSL  211 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCG-GGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchH-hhcCCCCCCEE
Confidence            9999888888776654         566666666665554                        4444 68889999999


Q ss_pred             ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084          534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK  613 (850)
Q Consensus       534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  613 (850)
                      ++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..++             
T Consensus       212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-------------  277 (328)
T 4fcg_A          212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-------------  277 (328)
T ss_dssp             EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-------------
T ss_pred             EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-------------
Confidence            999999995 566799999999999999999988888888888888888888877666665554432             


Q ss_pred             CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC
Q 003084          614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT  690 (850)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  690 (850)
                                                              +|++|+|++|++.+.+|..++++++|+.+++..+.+.
T Consensus       278 ----------------------------------------~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          278 ----------------------------------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ----------------------------------------TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ----------------------------------------CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                                                    5666666666666666666666666666666655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.8e-26  Score=256.91  Aligned_cols=235  Identities=21%  Similarity=0.185  Sum_probs=136.2

Q ss_pred             CCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEcc
Q 003084          432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS  511 (850)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  511 (850)
                      ++|+.|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+    .++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            355555555555555555555555556666665555554433  5555566666666665543211    1344444444


Q ss_pred             CcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc-CCCCCCEEeCCCCcCCc
Q 003084          512 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHG  590 (850)
Q Consensus       512 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~  590 (850)
                      +|.+.+..+    ..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       108 ~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            444433322    2346677777777777766666677777777777777777766666654 56777777777777665


Q ss_pred             cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC
Q 003084          591 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP  670 (850)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  670 (850)
                      ..+..+                                                       +++|++|+|++|.+++..|
T Consensus       184 ~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          184 VKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             EECCCC-------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred             cccccc-------------------------------------------------------CCCCCEEECCCCCCCCCCH
Confidence            422211                                                       2256666666666664333


Q ss_pred             ccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc-ccCChhhhcCCCCCEEEcc
Q 003084          671 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~  733 (850)
                       .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             36666666666666666663 4555666666666666666665 4455555555555554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=7.6e-24  Score=240.09  Aligned_cols=67  Identities=25%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN  725 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  725 (850)
                      +|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            5666777777666 3443   4566777777777776 4566677777777777777777766666655544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=6e-26  Score=252.74  Aligned_cols=234  Identities=26%  Similarity=0.239  Sum_probs=163.8

Q ss_pred             CCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECC
Q 003084          385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  464 (850)
Q Consensus       385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  464 (850)
                      +|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.++                   
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------------   93 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-------------------   93 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-------------------
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-------------------
Confidence            55555555555555555555555555555555555554333  445555555555555544                   


Q ss_pred             CCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084          465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI  544 (850)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  544 (850)
                           +..+     .++|+.|++++|.+.+..+..  +++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..
T Consensus        94 -----~l~~-----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           94 -----ELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             -----EEEE-----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred             -----CCCC-----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence                 2211     144455555555444333221  24555555555555554444 7788999999999999999888


Q ss_pred             Ccccc-CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccC
Q 003084          545 PDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  623 (850)
Q Consensus       545 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (850)
                      |..+. .+++|+.|+|++|.+++..+  ...+++|+.|+|++|.+++.++. +..                         
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~-------------------------  212 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS-------------------------  212 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG-------------------------
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC-------------------------
Confidence            88776 79999999999999996633  44689999999999999986654 433                         


Q ss_pred             CCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC-ccCcccCCCCCC
Q 003084          624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRH  702 (850)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~  702 (850)
                                                  +++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.
T Consensus       213 ----------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          213 ----------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             ----------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             ----------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence                                        3489999999999995 6778999999999999999998 677888888888


Q ss_pred             CCEEECc
Q 003084          703 IESLDLS  709 (850)
Q Consensus       703 L~~L~Ls  709 (850)
                      |+.++++
T Consensus       264 L~~l~~~  270 (487)
T 3oja_A          264 VQTVAKQ  270 (487)
T ss_dssp             HHHHHHH
T ss_pred             CcEEecc
Confidence            8887775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5.5e-27  Score=246.20  Aligned_cols=247  Identities=23%  Similarity=0.291  Sum_probs=151.4

Q ss_pred             CCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCC-CCCccccc-------CCCCCcEEECCCCccccCcchhc-
Q 003084          406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLG-------NLKGLQHIVMPKNHLEGPIPVEF-  476 (850)
Q Consensus       406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~-  476 (850)
                      ..++|+.|++++|.+  .+|..+...  |+.|++++|.+. ...+..+.       ++++|++|++++|.+++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            334455555555555  333333222  455555555442 12222222       34455555555555544444433 


Q ss_pred             -cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCC-----CCCcEEECcCCcCCCCcCccccC
Q 003084          477 -CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-----SSLVTLDLSYNYLNGSIPDWIDG  550 (850)
Q Consensus       477 -~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~  550 (850)
                       ..+++|++|++++|.+++.                        +. .+..+     ++|++|++++|++++..+..|++
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~------------------------~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR------------------------DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS------------------------SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             HhcCCCccEEEccCCCCcch------------------------hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence             4455555555555554432                        21 23332     67777888877777776677777


Q ss_pred             CCCCCEEECcCCcCccC--Cchhc--cCCCCCCEEeCCCCcCCccCC---CCcccCccccccCCCCCCCCCCcccccccC
Q 003084          551 LSQLSHLNLAHNNLEGE--VPIQL--CRLNQLQLLDLSDNNLHGLIP---SCFDNTTLHESYNNNSSPDKPFKTSFSISG  623 (850)
Q Consensus       551 l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (850)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|++++...   ..+                           
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------------------  224 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---------------------------  224 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---------------------------
Confidence            88888888888876644  23333  677888888888887763210   001                           


Q ss_pred             CCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC-ccccCCCCCCEEECcCCcCCccCcccCCCCCC
Q 003084          624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH  702 (850)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  702 (850)
                                                ..+++|++|++++|++++..| ..+..+++|+.|+|++|+++ .+|..+.  ++
T Consensus       225 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~  275 (312)
T 1wwl_A          225 --------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK  275 (312)
T ss_dssp             --------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred             --------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence                                      113478888888888887664 45666788888888888888 5666665  78


Q ss_pred             CCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084          703 IESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG  739 (850)
Q Consensus       703 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  739 (850)
                      |+.||+++|++++. |. +..+++|+.|++++|++++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888865 55 7888888888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=8.3e-24  Score=239.77  Aligned_cols=268  Identities=27%  Similarity=0.314  Sum_probs=187.1

Q ss_pred             CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  439 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  439 (850)
                      .++.|++++|.++ .+|..+.   ++|++|++++|.+.. +|.   .+++|++|++++|++++ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            4677777777777 6666543   567777777777663 332   35666666666666653 333   4556666666


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  519 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  519 (850)
                      ++|.+++. |.   .+++|+.|++++|.+++. |.   .+++|+.|++++|.+++                        +
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~------------------------l  156 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS------------------------L  156 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC------------------------C
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC------------------------c
Confidence            66666533 22   345566666666665532 22   13455555555555442                        2


Q ss_pred             CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccC
Q 003084          520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  599 (850)
Q Consensus       520 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  599 (850)
                      +.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++..+. .    
T Consensus       157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~-~----  219 (622)
T 3g06_A          157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA-L----  219 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC-C----
T ss_pred             CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC-C----
Confidence            21    34678888888888885 34   456888999999998885 333   24789999999998875432 1    


Q ss_pred             ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084          600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  679 (850)
                                                                          +++|++|++++|++++ +|   ..+++|
T Consensus       220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L  243 (622)
T 3g06_A          220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL  243 (622)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred             ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence                                                                1279999999999995 55   456899


Q ss_pred             CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccC
Q 003084          680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA  749 (850)
Q Consensus       680 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~  749 (850)
                      +.|+|++|+++. +|.   .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|..+..+.
T Consensus       244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999999994 554   6789999999999999 7799999999999999999999998877554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=7.4e-27  Score=245.82  Aligned_cols=261  Identities=17%  Similarity=0.159  Sum_probs=211.4

Q ss_pred             CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084          433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  512 (850)
Q Consensus       433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  512 (850)
                      +++..+++.+.+.......+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+ ...+++|+.|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            34555666666654444556677899999999999998888999999999999999999986654 44578999999999


Q ss_pred             cccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084          513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI  592 (850)
Q Consensus       513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  592 (850)
                      |.+++.      ...++|+.|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus        90 n~l~~l------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQEL------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEEEE------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             Cccccc------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            998643      2348999999999999865543   4688999999999999887888889999999999999998766


Q ss_pred             CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcc
Q 003084          593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ  672 (850)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  672 (850)
                      +..+..                                                    .+++|++|++++|.+++. | .
T Consensus       161 ~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~-~-~  186 (317)
T 3o53_A          161 FAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV-K-G  186 (317)
T ss_dssp             GGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-E-C
T ss_pred             HHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc-c-c
Confidence            554421                                                    134899999999999865 3 3


Q ss_pred             ccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc-CCCCCCccccCCC
Q 003084          673 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS-GKIPEWTAQFATF  751 (850)
Q Consensus       673 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~~  751 (850)
                      ...+++|++|+|++|++++.. ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..++.+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            445899999999999999654 45889999999999999999 56888999999999999999998 5666666666666


Q ss_pred             CccccCCC
Q 003084          752 NKSSYDGN  759 (850)
Q Consensus       752 ~~~~~~~n  759 (850)
                      ..+...++
T Consensus       265 ~~l~l~~~  272 (317)
T 3o53_A          265 QTVAKQTV  272 (317)
T ss_dssp             HHHHHHHH
T ss_pred             eEEECCCc
Confidence            66655533

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.3e-26  Score=238.12  Aligned_cols=133  Identities=25%  Similarity=0.309  Sum_probs=87.3

Q ss_pred             ccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccC-cccccccc-------CCCCCCeeeccCCcCcccCCc
Q 003084          355 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK-GHIFSRIF-------SLRNLRWLLLEGNHFVGEIPQ  426 (850)
Q Consensus       355 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~  426 (850)
                      ++..++|+.|++++|.+  .+|..+...   |+.|++++|.+. ...+..+.       ++++|++|++++|.+.+..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34456677777788777  567666542   677777777773 33444333       577788888888887777776


Q ss_pred             CC--CCCCCCcEEECcCCCCCCCCcccccCC-----CCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084          427 SL--SKCSSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       427 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            55  6777888888888877765 5555554     56666666666666555556666666666666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.6e-27  Score=275.64  Aligned_cols=426  Identities=17%  Similarity=0.137  Sum_probs=211.3

Q ss_pred             cccCCCCCCCEEEcCCCCCcc-cc-------------hhhhhccCCCCcEEeCCCCcCCCcccCCcCC-CCCcccEEecc
Q 003084           25 QELHNFTNLEYLTLDDSSLHI-SL-------------LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP-HFKSLEHLDMR   89 (850)
Q Consensus        25 ~~~~~l~~L~~L~Ls~n~i~~-~~-------------~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~-~l~~L~~L~L~   89 (850)
                      ..+.++++|++|+++++.... ..             ...+...+++|++|++++|.+++..+. .+. .+++|++|++ 
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L-  137 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVL-  137 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEE-
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeC-
Confidence            346678888888888864211 10             112222278888888888887655443 343 5788888888 


Q ss_pred             cCCc-ccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc--ccc-ccCccccCCCCCCEE
Q 003084           90 FARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND--LRG-SLPWCLANTTSLRIL  165 (850)
Q Consensus        90 ~~~~-~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L  165 (850)
                       .+| .+.+.....+...+++|++|++++|.+++.+....+.....+++|++|++++|.  +.. .++..+.++++|++|
T Consensus       138 -~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          138 -SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             -ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred             -CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence             666 444443344443388888888888887653322233334467788888888886  221 122223456888888


Q ss_pred             ECCCC-cCcCCCCcccccCCCCCCeEECcCCcC-------cCCCCcccccCCCCccEEE-ccCCccccccccccCCCCcc
Q 003084          166 DVSFN-QLTGSISSSPLVHLTSIEELRLSNNHF-------RIPVSLEPLFNHSKLKIFD-AKNNEINGEINESHSLTPKF  236 (850)
Q Consensus       166 ~Ls~n-~i~~~i~~~~~~~l~~L~~L~L~~n~~-------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~~  236 (850)
                      ++++| .+. .++. .+..+++|++|+++.+..       .+ . ...+.++++|+.+. +....               
T Consensus       217 ~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l-~~~l~~~~~L~~Ls~~~~~~---------------  277 (594)
T 2p1m_B          217 KLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-L-SVALSGCKELRCLSGFWDAV---------------  277 (594)
T ss_dssp             ECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-H-HHHHHTCTTCCEEECCBTCC---------------
T ss_pred             ecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHH-H-HHHHhcCCCcccccCCcccc---------------
Confidence            88887 333 4555 677788888888765532       11 0 11345566666552 21111               


Q ss_pred             ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCc-CccCcCCCCCccEE
Q 003084          237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFL  315 (850)
Q Consensus       237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L  315 (850)
                                   ...++..+..+++|++|++++|.+.+.....+...+++|+.|++++| +... .+.....+++|++|
T Consensus       278 -------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          278 -------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             -------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             -------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                         11122223334445555555544333322333334445555555444 2111 01111124445555


Q ss_pred             EccC---------CcCCcCCChhhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEcc--C----CcCCCCcch--
Q 003084          316 DVSN---------NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG-NVIFLQFLDLS--N----NKLTGEIPD--  377 (850)
Q Consensus       316 ~Ls~---------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~--  377 (850)
                      ++++         +.+++.....+...+++|++|.+..+.+++..+..+. .+++|+.|+++  +    +.++ ..|.  
T Consensus       344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~  422 (594)
T 2p1m_B          344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDI  422 (594)
T ss_dssp             EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHH
T ss_pred             EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhh
Confidence            4422         2222211122222345555555555555433333332 34555555555  2    3333 1111  


Q ss_pred             ---HHhhcCCCCCEEEccCCccCccccccccC-CCCCCeeeccCCcCcccCCcCC-CCCCCCcEEECcCCCCCCCCcc-c
Q 003084          378 ---HLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPR-W  451 (850)
Q Consensus       378 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~  451 (850)
                         .++..+++|+.|++++ .+.+..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... .
T Consensus       423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~  501 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN  501 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred             HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence               1123455566666644 444333333333 5555666665555543322222 3455566666666655332222 2


Q ss_pred             ccCCCCCcEEECCCCccccCcchhc-cCCCCCCEEecc
Q 003084          452 LGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDIS  488 (850)
Q Consensus       452 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls  488 (850)
                      ...+++|+.|++++|+++......+ ..++.|+...+.
T Consensus       502 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          502 ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            2335555566665555533222222 234444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.5e-23  Score=215.21  Aligned_cols=207  Identities=25%  Similarity=0.280  Sum_probs=160.0

Q ss_pred             CCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECc
Q 003084          481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA  560 (850)
Q Consensus       481 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  560 (850)
                      ..+.++++++.++. +|..+ +++++.|++++|.+.+. +...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57789999998874 44322 36788888888888644 33378888888888888888887666677888888888888


Q ss_pred             CCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhcc
Q 003084          561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT  640 (850)
Q Consensus       561 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (850)
                      +|++.+..+..+..+++|++|++++|.+++..+..|...+                                        
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------  133 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----------------------------------------  133 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc----------------------------------------
Confidence            8888877677778888888888888888777766665533                                        


Q ss_pred             ccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChh
Q 003084          641 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ  720 (850)
Q Consensus       641 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  720 (850)
                                   +|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..
T Consensus       134 -------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          134 -------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                         7888888888888666666788888888888888888777777888888888888888888766667


Q ss_pred             hhcCCCCCEEEccCCcCcCCCCC
Q 003084          721 LVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       721 l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      +..+++|+.|++++|++.|.++.
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hccccCCCEEEecCCCeeCCCcc
Confidence            77888888888888888776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.2e-27  Score=276.60  Aligned_cols=207  Identities=18%  Similarity=0.145  Sum_probs=121.3

Q ss_pred             hhcCCCCcEEEccCCcCcCcCccCcC-CCCCccEEEccCC-cCCcCCChhhhhcCCCCcEEEccCCcCcccCcccc----
Q 003084          282 LENNTKLEFLYLVNDSLAGPFRLPIH-SHKRLRFLDVSNN-NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF----  355 (850)
Q Consensus       282 ~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----  355 (850)
                      ...+++|++|++++|.+.+.....+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+    
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            34667777777777776654444443 4677778888777 44322222334447788888888877665444333    


Q ss_pred             cCCCCCCEEEccCCc--CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc-------CcccCCc
Q 003084          356 GNVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-------FVGEIPQ  426 (850)
Q Consensus       356 ~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~  426 (850)
                      ..+++|++|++++|.  +.......+...+++|++|++++|.-.+.++..+..+++|++|+++.+.       +.+ ++.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence            356678888888776  2211112223346788888888773222356666777788888765543       221 223


Q ss_pred             CCCCCCCCcEE-ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCC
Q 003084          427 SLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDN  490 (850)
Q Consensus       427 ~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n  490 (850)
                      .+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            45667777777 3333221 1333344456777777777777553322 22456777777777766

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.1e-24  Score=218.63  Aligned_cols=190  Identities=25%  Similarity=0.297  Sum_probs=109.9

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  602 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  602 (850)
                      .|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+.+..+..+....  
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--  124 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--  124 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT--
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC--
Confidence            455566666666666666555555566666666666666666655555566666666666666666554443333322  


Q ss_pred             cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccC-CCccccCCCCCCE
Q 003084          603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQT  681 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  681 (850)
                                                                         +|++|++++|.+++. +|..|.++++|++
T Consensus       125 ---------------------------------------------------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A          125 ---------------------------------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             ---------------------------------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             ---------------------------------------------------CCCEEECcCCccceecCchhhccCCCCCE
Confidence                                                               566666666666543 3556666666666


Q ss_pred             EECcCCcCCccCcccCCCCCCCC----EEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084          682 LNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD  757 (850)
Q Consensus       682 L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  757 (850)
                      |++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|+.|++++|.+++..+..+..+..+..+.++
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence            66666666655555555554444    5666666666444443332 356666666666665555444555566666666


Q ss_pred             CCCCCCCCC
Q 003084          758 GNPFLCGLP  766 (850)
Q Consensus       758 ~n~~~c~~~  766 (850)
                      +||+.|+|+
T Consensus       233 ~N~~~c~c~  241 (276)
T 2z62_A          233 TNPWDCSCP  241 (276)
T ss_dssp             SSCBCCCTT
T ss_pred             CCcccccCC
Confidence            666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8e-24  Score=218.24  Aligned_cols=209  Identities=25%  Similarity=0.307  Sum_probs=127.9

Q ss_pred             CCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECc
Q 003084          457 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS  536 (850)
Q Consensus       457 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  536 (850)
                      ++++|++++|.+++..+..|.++++|++|++++|.+.+.                        +...|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence            445555555555444444455555555555555544321                        11144455555555555


Q ss_pred             CCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCC
Q 003084          537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPF  615 (850)
Q Consensus       537 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  615 (850)
                      +|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+                
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----------------  148 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----------------  148 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------
Confidence            5555544445555555566666655555544444555566666666666665543 23333332                


Q ss_pred             cccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCC----EEECcCCcCCc
Q 003084          616 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ----TLNLSHNNLTG  691 (850)
Q Consensus       616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~  691 (850)
                                                           ++|++|++++|++++..+..|..+++|+    .|++++|.+++
T Consensus       149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                 2566666666666655555666555665    78888888886


Q ss_pred             cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       692 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            66555544 4788899999988877677778899999999999999988874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=7e-23  Score=210.12  Aligned_cols=206  Identities=24%  Similarity=0.249  Sum_probs=174.0

Q ss_pred             cccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeC
Q 003084          504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL  583 (850)
Q Consensus       504 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  583 (850)
                      ..+.++++++.++. +|. .+  .++++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            56789999888863 554 22  267899999999998777778889999999999999998777777788999999999


Q ss_pred             CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084          584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  663 (850)
Q Consensus       584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  663 (850)
                      ++|++++..+..|....                                                     +|++|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n  119 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRN  119 (270)
T ss_dssp             CSSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSS
T ss_pred             CCCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCC
Confidence            99998877776665543                                                     7999999999


Q ss_pred             ccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          664 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ++++..+..|..+++|++|+|++|.+++..+..|+.+++|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            99988888888999999999999999977777788999999999999999987777888899999999999999877776


Q ss_pred             CccccCCCCccccCCCCCCCCCC
Q 003084          744 WTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       744 ~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      .+..+..+..+.+.+|||.|+|+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            67778888888999999999886

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7e-23  Score=211.66  Aligned_cols=206  Identities=25%  Similarity=0.287  Sum_probs=123.1

Q ss_pred             ccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCC
Q 003084          476 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS  555 (850)
Q Consensus       476 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  555 (850)
                      +.+++++++++++++.++.. |..+ ++.++.|++++|.+++..+. .|..+++|+.|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            56778888899988888743 3222 24666666666666543333 56666666666666666654322  25566666


Q ss_pred             EEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhh
Q 003084          556 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEI  635 (850)
Q Consensus       556 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (850)
                      +|++++|++. .+|..+..+++|++|++++|++++.++..|..++                                   
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----------------------------------  124 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------------------------------  124 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence            6666666665 4455555666666666666666655555554433                                   


Q ss_pred             hhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084          636 FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG  715 (850)
Q Consensus       636 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  715 (850)
                                        +|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ 
T Consensus       125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                              5666666666666555555556666666666666666554455555666666666666665 


Q ss_pred             cCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          716 KIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       716 ~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      .+|..+..+++|+.+++++|++.|.+
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccChhhcccccCCeEEeCCCCccCcC
Confidence            45555555556666666666655443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2e-22  Score=208.21  Aligned_cols=205  Identities=27%  Similarity=0.270  Sum_probs=153.6

Q ss_pred             CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEE
Q 003084          502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL  581 (850)
Q Consensus       502 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  581 (850)
                      .++++.++++++.++ .+|. .+  .++++.|++++|.+++..+..|.++++|+.|++++|.+++..+.  ..+++|++|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            457788888888875 3444 22  26788888888888877777788888888888888888754332  677888888


Q ss_pred             eCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEcc
Q 003084          582 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS  661 (850)
Q Consensus       582 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  661 (850)
                      ++++|+++.. |..+..                                                     +++|++|+++
T Consensus        83 ~Ls~N~l~~l-~~~~~~-----------------------------------------------------l~~L~~L~l~  108 (290)
T 1p9a_G           83 DLSHNQLQSL-PLLGQT-----------------------------------------------------LPALTVLDVS  108 (290)
T ss_dssp             ECCSSCCSSC-CCCTTT-----------------------------------------------------CTTCCEEECC
T ss_pred             ECCCCcCCcC-chhhcc-----------------------------------------------------CCCCCEEECC
Confidence            8888887643 333332                                                     2378888888


Q ss_pred             CCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       662 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      +|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence            88888777777888888888888888888777777788888888888888888666666778888888888888887 45


Q ss_pred             CCCccccCCCCccccCCCCCCCCCCC
Q 003084          742 PEWTAQFATFNKSSYDGNPFLCGLPL  767 (850)
Q Consensus       742 p~~~~~~~~~~~~~~~~n~~~c~~~l  767 (850)
                      |.++.....+..+.+.+|||.|+|.+
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhhcccccCCeEEeCCCCccCcCcc
Confidence            55555666777778888888888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=8.3e-23  Score=209.68  Aligned_cols=224  Identities=21%  Similarity=0.247  Sum_probs=171.3

Q ss_pred             cEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcc
Q 003084          435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM  514 (850)
Q Consensus       435 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  514 (850)
                      ..+++..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+                    
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--------------------   77 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--------------------   77 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------------------
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------------------
Confidence            3344444444322  2344556666666666666532  235556666666666665542                    


Q ss_pred             cccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCC
Q 003084          515 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS  594 (850)
Q Consensus       515 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  594 (850)
                          ++  .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus        78 ----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           78 ----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             ----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence                11  577888999999999999888777888899999999999999877777788899999999999998877776


Q ss_pred             CcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc
Q 003084          595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG  674 (850)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  674 (850)
                      .|..++                                                     +|++|++++|++++..+..|.
T Consensus       152 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          152 VFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             TTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred             HhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHhc
Confidence            665543                                                     799999999999987777788


Q ss_pred             CCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcccc
Q 003084          675 NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF  748 (850)
Q Consensus       675 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  748 (850)
                      .+++|+.|++++|++++..|..|+.+++|+.|++++|++.+.       ++.|+.++++.|.++|.+|.+++.+
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            999999999999999988888889999999999999988743       4578888999999999998865433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.9e-21  Score=196.98  Aligned_cols=162  Identities=27%  Similarity=0.274  Sum_probs=142.7

Q ss_pred             CCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCC
Q 003084          528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN  607 (850)
Q Consensus       528 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  607 (850)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|....       
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-------  107 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-------
Confidence            5788899999999888888888899999999999999888888888899999999999999887777666543       


Q ss_pred             CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084          608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  687 (850)
                                                                    +|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus       108 ----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          108 ----------------------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence                                                          8999999999999777777899999999999999


Q ss_pred             cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      ++++..+..|+.+++|+.|+|++|++++..|..+..+++|+.|++++|+++|...
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            9998877789999999999999999998888889999999999999999998744

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=7.1e-22  Score=202.70  Aligned_cols=203  Identities=22%  Similarity=0.216  Sum_probs=168.3

Q ss_pred             CCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcC
Q 003084          482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH  561 (850)
Q Consensus       482 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  561 (850)
                      +..+++.++.+... .......+|+.|++++|.+.. ++  .+..+++|+.|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            34455666655432 122336789999999998853 22  577889999999999999864  4788999999999999


Q ss_pred             CcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccc
Q 003084          562 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTK  641 (850)
Q Consensus       562 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (850)
                      |.+++..+..+..+++|++|++++|++++..+..|..+.                                         
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------------------------  133 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-----------------------------------------  133 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-----------------------------------------
Confidence            999988887888999999999999999888777666544                                         


Q ss_pred             cchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084          642 NIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL  721 (850)
Q Consensus       642 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  721 (850)
                                  +|++|++++|++++..+..|..+++|+.|++++|++++..+..|+.+++|+.|++++|++++..|..+
T Consensus       134 ------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          134 ------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                        89999999999998777778899999999999999998888888999999999999999998888888


Q ss_pred             hcCCCCCEEEccCCcCcCCCCC
Q 003084          722 VDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       722 ~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ..+++|+.|++++|++.|.+|.
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hCCcCCCEEEccCCCccccCcH
Confidence            9999999999999999988875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.8e-21  Score=194.03  Aligned_cols=183  Identities=23%  Similarity=0.281  Sum_probs=165.3

Q ss_pred             CCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCC
Q 003084          528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN  607 (850)
Q Consensus       528 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  607 (850)
                      .+.+.++++++.++. +|..+.  ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|....       
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------   83 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence            356789999999984 455443  6899999999999988888999999999999999999998887776644       


Q ss_pred             CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084          608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  687 (850)
                                                                    +|++|++++|++++..+..|..+++|++|+|++|
T Consensus        84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                          8999999999999888888999999999999999


Q ss_pred             cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCC-CC
Q 003084          688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG-LP  766 (850)
Q Consensus       688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~-~~  766 (850)
                      ++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+..+..+..+..+.+.+|++.|. |.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99988888899999999999999999988788899999999999999999988887788899999999999999998 54

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=7.3e-23  Score=219.69  Aligned_cols=67  Identities=19%  Similarity=0.183  Sum_probs=41.3

Q ss_pred             cCCeEEccCCccccCCC----ccccCCCCCCEEECcCCcCCccC-------cccCCCCCCCCEEECcCCcCcccCChh
Q 003084          654 LLAGLDLSCNKLVGHIP----PQIGNLTRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSYNKLSGKIPRQ  720 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~  720 (850)
                      +|++|||++|.+++..+    ..+..+++|+.|+|++|.+.+..       +..+..+++|+.||+++|++....+..
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            56677777776665433    22455667777777777744332       235666777777777777776554433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.3e-21  Score=193.86  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=36.1

Q ss_pred             cCC-eEEccCCccccCCCccccCCCCCCEEECcCCc-CCccCcccCCCC-CCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084          654 LLA-GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVDLNTLAIF  730 (850)
Q Consensus       654 ~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  730 (850)
                      +|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++. |..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence            444 4555555444222222333 455555555552 554444445555 5555555555555532 222  34445555


Q ss_pred             EccCC
Q 003084          731 IVAYN  735 (850)
Q Consensus       731 ~l~~N  735 (850)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            55443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.4e-22  Score=217.53  Aligned_cols=261  Identities=19%  Similarity=0.182  Sum_probs=176.4

Q ss_pred             eeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCc----ccccCCC-CCcEEECCCCccccCcchhccCC-----CCC
Q 003084          413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLK-GLQHIVMPKNHLEGPIPVEFCRL-----DSL  482 (850)
Q Consensus       413 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L  482 (850)
                      +.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666666555555557777777777665555    5555666 67777777776666555555443     666


Q ss_pred             CEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCC-CCCcEEECcCCcCCCCcCccc----cC-CCCCCE
Q 003084          483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGSIPDWI----DG-LSQLSH  556 (850)
Q Consensus       483 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~  556 (850)
                      ++|++++|.+.+..+..                   +. ..+..+ ++|++|++++|.+++..+..+    .. .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~-------------------l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDE-------------------LV-KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHH-------------------HH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHH-------------------HH-HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence            66666666655322110                   00 124444 789999999999886655443    33 368999


Q ss_pred             EECcCCcCccCCch----hccCCC-CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhh
Q 003084          557 LNLAHNNLEGEVPI----QLCRLN-QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK  631 (850)
Q Consensus       557 L~L~~n~l~~~~~~----~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (850)
                      |++++|.+++..+.    .+..++ +|++|++++|++++..+..+...-                               
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------  191 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------  191 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------------------
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-------------------------------
Confidence            99999998854433    345555 899999999988765543332110                               


Q ss_pred             hhhhhhhccccchhcchhhhh-ccCCeEEccCCccccC----CCccccC-CCCCCEEECcCCcCCccCc----ccCCCCC
Q 003084          632 ILEIFEFTTKNIAYAYQGRVL-SLLAGLDLSCNKLVGH----IPPQIGN-LTRIQTLNLSHNNLTGTIP----LTFSNLR  701 (850)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~  701 (850)
                                        ... ++|++|||++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..++
T Consensus       192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence                              001 3799999999999863    3445555 4599999999999997655    4567789


Q ss_pred             CCCEEECcCCcCcccC-------ChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          702 HIESLDLSYNKLSGKI-------PRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       702 ~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      +|+.|++++|.+.+..       +..+..+++|+.||+++|++....+
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            9999999999955433       3466788999999999999986533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.2e-21  Score=202.12  Aligned_cols=232  Identities=18%  Similarity=0.212  Sum_probs=154.7

Q ss_pred             CCcEEECcCCCCCCCCcc---cccCCCCCcEEECCCCccccCcchhc--cCCCCCCEEeccCCcCCCCCCCCcCCCcccE
Q 003084          433 SLKGLYLNNNNLSGKIPR---WLGNLKGLQHIVMPKNHLEGPIPVEF--CRLDSLQILDISDNNISGSLPSCFYPLSIKQ  507 (850)
Q Consensus       433 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  507 (850)
                      .++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.         
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---------  135 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---------  135 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---------
Confidence            456666666554321000   01123445666666665555555554  5555555555555555432110         


Q ss_pred             EEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccC--C--chhccCCCCCCEEeC
Q 003084          508 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--V--PIQLCRLNQLQLLDL  583 (850)
Q Consensus       508 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L  583 (850)
                                 ++...+..+++|++|++++|++.+..+..++++++|++|++++|++.+.  .  +..+..+++|++|++
T Consensus       136 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          136 -----------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             -----------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred             -----------hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence                       1112445788899999999999888888888899999999999987642  1  222467888999999


Q ss_pred             CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084          584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  663 (850)
Q Consensus       584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  663 (850)
                      ++|+++...+....                                                  ....+++|++|||++|
T Consensus       205 s~N~l~~l~~~~~~--------------------------------------------------l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          205 RNTGMETPTGVCAA--------------------------------------------------LAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CSSCCCCHHHHHHH--------------------------------------------------HHHHTCCCSSEECTTS
T ss_pred             CCCCCCchHHHHHH--------------------------------------------------HHhcCCCCCEEECCCC
Confidence            99987532211000                                                  0012458999999999


Q ss_pred             ccccCCCccccCC---CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084          664 KLVGHIPPQIGNL---TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG  739 (850)
Q Consensus       664 ~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  739 (850)
                      ++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9988778777776   69999999999998 5676664  7899999999999854 43 6788999999999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.8e-21  Score=191.53  Aligned_cols=198  Identities=17%  Similarity=0.190  Sum_probs=161.7

Q ss_pred             CCcccEEEccCcccccccCccccCCCCCCcEEECcCCc-CCCCcCccccCCCCCCEEECcC-CcCccCCchhccCCCCCC
Q 003084          502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQ  579 (850)
Q Consensus       502 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~  579 (850)
                      +.+++.|++++|.+++ ++...|.++++|+.|++++|+ ++.+.+..|.++++|++|++++ |++++..+..|.++++|+
T Consensus        30 ~~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3356666666666654 344478899999999999997 8877777899999999999998 999988788899999999


Q ss_pred             EEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC---
Q 003084          580 LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA---  656 (850)
Q Consensus       580 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---  656 (850)
                      +|++++|++++.+ . |....                                                     +|+   
T Consensus       109 ~L~l~~n~l~~lp-~-~~~l~-----------------------------------------------------~L~~L~  133 (239)
T 2xwt_C          109 FLGIFNTGLKMFP-D-LTKVY-----------------------------------------------------STDIFF  133 (239)
T ss_dssp             EEEEEEECCCSCC-C-CTTCC-----------------------------------------------------BCCSEE
T ss_pred             EEeCCCCCCcccc-c-ccccc-----------------------------------------------------cccccc
Confidence            9999999998743 3 44433                                                     566   


Q ss_pred             eEEccCC-ccccCCCccccCCCCCC-EEECcCCcCCccCcccCCCCCCCCEEECcCCc-CcccCChhhhcC-CCCCEEEc
Q 003084          657 GLDLSCN-KLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-LSGKIPRQLVDL-NTLAIFIV  732 (850)
Q Consensus       657 ~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~l  732 (850)
                      +|++++| ++++..+..|.++++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            9999999 99988778899999999 9999999999655556665 899999999995 998878899999 99999999


Q ss_pred             cCCcCcCCCCCCccccCCCCccccCCC
Q 003084          733 AYNNLSGKIPEWTAQFATFNKSSYDGN  759 (850)
Q Consensus       733 ~~N~l~~~~p~~~~~~~~~~~~~~~~n  759 (850)
                      ++|++++..+.   .+..+..+.+.++
T Consensus       213 ~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          213 SQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCccccCChh---HhccCceeeccCc
Confidence            99999964444   4556666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=8.7e-23  Score=221.56  Aligned_cols=247  Identities=18%  Similarity=0.206  Sum_probs=177.3

Q ss_pred             cCCcCCCCCCCCcEEECcCCCCCCCCc----ccccCCCCCcEEECCCCcc---ccCcchhc-------cCCCCCCEEecc
Q 003084          423 EIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLKGLQHIVMPKNHL---EGPIPVEF-------CRLDSLQILDIS  488 (850)
Q Consensus       423 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~ls  488 (850)
                      .++..+..+++|+.|++++|.+++..+    ..+..+++|++|++++|.+   .+.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344556667788888888888765433    2356778888888877543   33334333       567777777777


Q ss_pred             CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccc----cCC---------CCCC
Q 003084          489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGL---------SQLS  555 (850)
Q Consensus       489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~  555 (850)
                      +|.+.+...                   ..++. .+..+++|+.|+|++|.++...+..+    ..+         ++|+
T Consensus       103 ~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          103 DNAFGPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             SCCCCTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CCcCCHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence            777653100                   01222 56678888888888888864433333    333         8999


Q ss_pred             EEECcCCcCc-cCCc---hhccCCCCCCEEeCCCCcCCcc-----CCCCcccCccccccCCCCCCCCCCcccccccCCCC
Q 003084          556 HLNLAHNNLE-GEVP---IQLCRLNQLQLLDLSDNNLHGL-----IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG  626 (850)
Q Consensus       556 ~L~L~~n~l~-~~~~---~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (850)
                      +|++++|+++ +..+   ..+..+++|++|++++|.++..     .+..+..                            
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~----------------------------  214 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY----------------------------  214 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG----------------------------
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc----------------------------
Confidence            9999999887 3333   4567788999999999987621     1112222                            


Q ss_pred             chhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc----cCCCccccCCCCCCEEECcCCcCCcc----CcccC-
Q 003084          627 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV----GHIPPQIGNLTRIQTLNLSHNNLTGT----IPLTF-  697 (850)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~-  697 (850)
                                               +++|++|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    +|..+ 
T Consensus       215 -------------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          215 -------------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             -------------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             -------------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence                                     348999999999985    56778889999999999999999865    56666 


Q ss_pred             -CCCCCCCEEECcCCcCcc----cCChhh-hcCCCCCEEEccCCcCcCCCC
Q 003084          698 -SNLRHIESLDLSYNKLSG----KIPRQL-VDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       698 -~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p  742 (850)
                       +.+++|+.|+|++|++++    .+|..+ .++++|+.|++++|++++..|
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             348999999999999997    478777 668999999999999997764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=7.5e-21  Score=199.33  Aligned_cols=56  Identities=29%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  714 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  714 (850)
                      +|++|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            5666666666666 4454443  5677777777777643 22 556667777777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.2e-20  Score=193.85  Aligned_cols=196  Identities=23%  Similarity=0.367  Sum_probs=139.4

Q ss_pred             ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCc
Q 003084          452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV  531 (850)
Q Consensus       452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  531 (850)
                      ...+++|++|++++|.+... + .+..+++|+.|++++|.+.+.                        +  .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~--~~~~l~~L~   88 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------A--PLKNLTKIT   88 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------G--GGTTCCSCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------h--hHccCCCCC
Confidence            34566777777777777643 2 466677777777777766532                        1  266777788


Q ss_pred             EEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCC
Q 003084          532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP  611 (850)
Q Consensus       532 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~  611 (850)
                      .|++++|++++.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+++..+  +..             
T Consensus        89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------  149 (308)
T 1h6u_A           89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------  149 (308)
T ss_dssp             EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred             EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence            888888887754  3577788888888888887753 2 37778888888888887765443  222             


Q ss_pred             CCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCc
Q 003084          612 DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG  691 (850)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  691 (850)
                                                              +++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       150 ----------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          150 ----------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence                                                    3378888888888875433  7788888888888888875


Q ss_pred             cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084          692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK  740 (850)
Q Consensus       692 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  740 (850)
                      ..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            543  7778888888888888875543  77888888888888888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=9.3e-22  Score=209.47  Aligned_cols=233  Identities=18%  Similarity=0.188  Sum_probs=134.3

Q ss_pred             CCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC-cchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084          432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP-IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL  510 (850)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l  510 (850)
                      ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+                
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------  132 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------  132 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------
Confidence            3444444444444433322 23345555555555554433 34444555555555555554431                


Q ss_pred             cCcccccccCccccCCCCCCcEEECcCC-cCCCC-cCccccCCCCCCEEECcCC-cCccC-CchhccCCC-CCCEEeCCC
Q 003084          511 SKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS-IPDWIDGLSQLSHLNLAHN-NLEGE-VPIQLCRLN-QLQLLDLSD  585 (850)
Q Consensus       511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls~  585 (850)
                             ..+. .+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus       133 -------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          133 -------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             -------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             -------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence                   1122 3445566666666666 44431 3444566667777777776 66543 345566667 777777777


Q ss_pred             Cc--CC-ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084          586 NN--LH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC  662 (850)
Q Consensus       586 n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  662 (850)
                      |.  ++ +..+..+                                                     ..+++|++|++++
T Consensus       205 ~~~~~~~~~l~~~~-----------------------------------------------------~~~~~L~~L~l~~  231 (336)
T 2ast_B          205 YRKNLQKSDLSTLV-----------------------------------------------------RRCPNLVHLDLSD  231 (336)
T ss_dssp             CGGGSCHHHHHHHH-----------------------------------------------------HHCTTCSEEECTT
T ss_pred             CcccCCHHHHHHHH-----------------------------------------------------hhCCCCCEEeCCC
Confidence            73  32 1111111                                                     1134788888888


Q ss_pred             Cc-cccCCCccccCCCCCCEEECcCCc-CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCCcCcC
Q 003084          663 NK-LVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNLSG  739 (850)
Q Consensus       663 n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~  739 (850)
                      |. +++..+..+..+++|+.|++++|. ++......++.+++|+.|++++| ++.   +.+..+ ..+..|++++|++++
T Consensus       232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred             CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence            87 666667778888899999999885 33222235778899999999988 442   233333 235666789999998


Q ss_pred             CCCCCcc
Q 003084          740 KIPEWTA  746 (850)
Q Consensus       740 ~~p~~~~  746 (850)
                      ..|..++
T Consensus       308 ~~~~~~~  314 (336)
T 2ast_B          308 IARPTIG  314 (336)
T ss_dssp             TTCSSCS
T ss_pred             ccCCccc
Confidence            8887543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=6.4e-20  Score=191.51  Aligned_cols=193  Identities=23%  Similarity=0.352  Sum_probs=114.5

Q ss_pred             CCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEE
Q 003084          430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH  509 (850)
Q Consensus       430 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  509 (850)
                      .+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.              
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--------------  100 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------------  100 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------------
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--------------
Confidence            34455555555555543 22 34555556666666665554333  55666666666666655421              


Q ss_pred             ccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084          510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  589 (850)
Q Consensus       510 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  589 (850)
                                +  .+..+++|+.|++++|++++..  .+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       101 ----------~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          101 ----------S--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ----------G--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ----------h--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence                      0  3445556666666666665432  25566666666666666654332  556666666666666665


Q ss_pred             ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC
Q 003084          590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  669 (850)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  669 (850)
                      +..+  +..                                                     +++|++|++++|++++..
T Consensus       165 ~~~~--l~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          165 DLTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             CCGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCCG
T ss_pred             CChh--hcC-----------------------------------------------------CCCCCEEECCCCccCcCh
Confidence            4332  222                                                     236777777777776443


Q ss_pred             CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084          670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG  715 (850)
Q Consensus       670 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  715 (850)
                      +  +..+++|+.|+|++|++++..+  +..+++|+.|++++|++++
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            2  6777788888888888775543  6777888888888888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=8.3e-22  Score=209.83  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             CCEEEccCCcCCCCcchHHhhcC--CCCCEEEccCCccCccccccccCCCCCCeeeccCCcCccc-CCcCCCCCCCCcEE
Q 003084          361 LQFLDLSNNKLTGEIPDHLAMCC--VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGL  437 (850)
Q Consensus       361 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  437 (850)
                      ++.++++++.+.   +.. +..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            566777766654   222 2223  5566666666655544333 33445555555555544432 33334444444444


Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEECCCC
Q 003084          438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKN  466 (850)
Q Consensus       438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  466 (850)
                      ++++|.+++..+..+..+++|++|++++|
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            44444444333334444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=3.2e-22  Score=217.11  Aligned_cols=65  Identities=22%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             cCCeEEccCCccccC----CCcccc--CCCCCCEEECcCCcCCc----cCcccC-CCCCCCCEEECcCCcCcccCC
Q 003084          654 LLAGLDLSCNKLVGH----IPPQIG--NLTRIQTLNLSHNNLTG----TIPLTF-SNLRHIESLDLSYNKLSGKIP  718 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p  718 (850)
                      +|++|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            677777777776654    445553  38888899999998886    366666 567899999999999887664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3.9e-19  Score=189.51  Aligned_cols=244  Identities=18%  Similarity=0.142  Sum_probs=158.0

Q ss_pred             cEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCE-EEc
Q 003084          313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSL  391 (850)
Q Consensus       313 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l  391 (850)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|..+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888887 777655   3477888888888875555677777888888888887765667666666666554 444


Q ss_pred             cCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC
Q 003084          392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  471 (850)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  471 (850)
                      +.|++....+..|..+++|++|++++|++....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666655666666666666666666665444444444445555555432                       223322


Q ss_pred             cchhccCCC-CCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084          472 IPVEFCRLD-SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  550 (850)
Q Consensus       472 ~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  550 (850)
                      .+..|..+. .++.|++++|+++...+..+...+++++++.+++..+.++.+.|.++++|+.|++++|+++...+..|  
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--  222 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--  222 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence            333333332 45566666666665555555566667777765444457777789999999999999999996655544  


Q ss_pred             CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCc
Q 003084          551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN  587 (850)
Q Consensus       551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  587 (850)
                       .+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus       223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             455666655554333555 47889999999998653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3e-19  Score=175.16  Aligned_cols=161  Identities=25%  Similarity=0.260  Sum_probs=134.6

Q ss_pred             CCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084          527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  606 (850)
Q Consensus       527 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  606 (850)
                      .++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|....      
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence            45788889999888877777788889999999999988877677788889999999999988877666665533      


Q ss_pred             CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084          607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  686 (850)
                                                                     +|++|++++|++++..+..|..+++|+.|++++
T Consensus       101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                           799999999999877777788999999999999


Q ss_pred             CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccc
Q 003084          687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ  747 (850)
Q Consensus       687 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  747 (850)
                      |++++..+..|..+++|+.|++++|++.+       .++.|++|+++.|.++|.+|.+++.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence            99998777778999999999999998874       4567889999999999999986543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.9e-19  Score=176.34  Aligned_cols=156  Identities=22%  Similarity=0.262  Sum_probs=133.2

Q ss_pred             cEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCC
Q 003084          531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS  610 (850)
Q Consensus       531 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~  610 (850)
                      +.++++++.++. +|..+.  ++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+.          
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            578899998884 454443  6899999999999987777889999999999999999888888777644          


Q ss_pred             CCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC
Q 003084          611 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT  690 (850)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  690 (850)
                                                                 +|++|+|++|+++...+..|.++++|+.|+|++|+++
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       8999999999999766667888999999999999999


Q ss_pred             ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          691 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       691 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      +..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            8888899999999999999999998888888889999999999999887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=5.9e-19  Score=188.16  Aligned_cols=206  Identities=24%  Similarity=0.214  Sum_probs=129.7

Q ss_pred             CEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCC-cCCCCCCCCcE-EEC
Q 003084          362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKG-LYL  439 (850)
Q Consensus       362 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l  439 (850)
                      ++++.++++++ .+|..+   .+++++|++++|+|+...+..|.++++|++|+|++|++.+.+| .+|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46777777777 777655   3567788888887776666667777777777777777655443 35666666654 445


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCC-cCCCCCCCCcCCCcccEEEccCcccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQ  518 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~  518 (850)
                      ..|+++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+.                        .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence            556676665666666677777777766666555545555555556665442 332                        3


Q ss_pred             cCccccCCCC-CCcEEECcCCcCCCCcCccccCCCCCCEEECcC-CcCccCCchhccCCCCCCEEeCCCCcCCccCCCCc
Q 003084          519 LKEGTFFNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  596 (850)
Q Consensus       519 ~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  596 (850)
                      ++...|..+. .++.|++++|+++.+.+..| ...+|+.|++++ |.++...+..|.++++|++|++++|+++.+++..|
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            3333455443 46677777777775444444 445677777764 55554444566777777777777777766555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=2.1e-19  Score=192.32  Aligned_cols=180  Identities=28%  Similarity=0.271  Sum_probs=133.4

Q ss_pred             cEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcccc-CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084          506 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  584 (850)
Q Consensus       506 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  584 (850)
                      +.++++++.++ .+|. .+  .+.++.|+|++|++++..+..|. ++++|+.|+|++|++++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56778877775 3444 22  24577888888888877777776 78888888888888887777778888888888888


Q ss_pred             CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084          585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  664 (850)
Q Consensus       585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  664 (850)
                      +|++++..+..|..+.                                                     +|++|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence            8888777666665543                                                     78888888888


Q ss_pred             cccCCCccccCCCCCCEEECcCCcCCccCcccC---CCCCCCCEEECcCCcCcccCChhhhcCCC--CCEEEccCCcCcC
Q 003084          665 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSGKIPRQLVDLNT--LAIFIVAYNNLSG  739 (850)
Q Consensus       665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~  739 (850)
                      +++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|||++|++++..+..+..++.  ++.|++++|++.|
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            887777788888888888888888886655555   56788888888888888666667777776  3778888888876


Q ss_pred             CCC
Q 003084          740 KIP  742 (850)
Q Consensus       740 ~~p  742 (850)
                      .+.
T Consensus       204 ~C~  206 (361)
T 2xot_A          204 DCK  206 (361)
T ss_dssp             CHH
T ss_pred             CcC
Confidence            553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.4e-19  Score=199.32  Aligned_cols=83  Identities=24%  Similarity=0.357  Sum_probs=43.1

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCC-------CEEECcCCcCcccCChhhhcCCC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI-------ESLDLSYNKLSGKIPRQLVDLNT  726 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~  726 (850)
                      +|++|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            45555555555554 343 43  55555555555555 3333 332  44       55666666555 34555555556


Q ss_pred             CCEEEccCCcCcCCCCCCc
Q 003084          727 LAIFIVAYNNLSGKIPEWT  745 (850)
Q Consensus       727 L~~L~l~~N~l~~~~p~~~  745 (850)
                      |+.|++++|++++.+|..+
T Consensus       232 L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             TEEEECCSSSCCHHHHHHH
T ss_pred             CCEEEeeCCcCCCcCHHHH
Confidence            6666666666655555433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.8e-19  Score=172.25  Aligned_cols=163  Identities=28%  Similarity=0.265  Sum_probs=135.5

Q ss_pred             CcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEe
Q 003084          503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD  582 (850)
Q Consensus       503 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  582 (850)
                      ++++.|++++|.+.+ ++...|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            355555555555543 3333678899999999999999987777889999999999999999977777788999999999


Q ss_pred             CCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084          583 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC  662 (850)
Q Consensus       583 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  662 (850)
                      +++|.+++..+..|....                                                     +|++|++++
T Consensus       107 L~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~  133 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLT-----------------------------------------------------QLKDLRLYQ  133 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred             cCCCcCcccCHhHhccCC-----------------------------------------------------cCCEEECCC
Confidence            999999887776665543                                                     899999999


Q ss_pred             CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084          663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT  726 (850)
Q Consensus       663 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  726 (850)
                      |++++..+..|..+++|+.|++++|.+.+       .+++|+.|+++.|+++|.+|+.+..++.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            99998777778999999999999998774       4568999999999999999998887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=6.5e-19  Score=173.84  Aligned_cols=157  Identities=22%  Similarity=0.262  Sum_probs=139.7

Q ss_pred             cEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCC
Q 003084          531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  609 (850)
Q Consensus       531 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~  609 (850)
                      +.+++++|.++. +|..+  .+.++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..+.         
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   81 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS---------   81 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence            589999999985 45544  3467899999999997754 4588999999999999999988887777644         


Q ss_pred             CCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcC
Q 003084          610 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL  689 (850)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  689 (850)
                                                                  +|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                        899999999999988888899999999999999999


Q ss_pred             CccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          690 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       690 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      ++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.++.
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999899999999999999999999998899999999999999999999988764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=172.15  Aligned_cols=113  Identities=17%  Similarity=0.256  Sum_probs=50.3

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            34444444444444333344444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|.+++..|..+..+..+..+.+++||+.|+|+
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            444444444444444444444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.5e-18  Score=171.12  Aligned_cols=113  Identities=23%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            45555555555554445555555555555555555554444444555555555555555554445555555555555555


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|++++..+..+..+..+..+.+.+||+.|+|+
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            555554444444444445555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.5e-18  Score=168.46  Aligned_cols=157  Identities=25%  Similarity=0.244  Sum_probs=137.9

Q ss_pred             CCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCC
Q 003084          529 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN  608 (850)
Q Consensus       529 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  608 (850)
                      +-+.++++++.++. +|..+  .++|++|++++|.+.+..+..|..+++|++|+|++|++.+..+..|..++        
T Consensus        20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------   88 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------   88 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred             eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC--------
Confidence            35679999999884 45443  38899999999999988899999999999999999999887777666544        


Q ss_pred             CCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCc
Q 003084          609 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN  688 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  688 (850)
                                                                   +|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus        89 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           89 ---------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ---------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                                         89999999999998777788999999999999999


Q ss_pred             CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          689 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       689 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      ++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99 678888999999999999999998777889999999999999999998776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.4e-18  Score=184.13  Aligned_cols=112  Identities=25%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             EEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccC-CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC
Q 003084          484 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN  562 (850)
Q Consensus       484 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  562 (850)
                      .++++++.++. +|.. .+..++.|++++|.+++..+. .|. .+++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus        22 ~l~c~~~~l~~-iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSS-CCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            45555555442 2221 123455555555555432222 343 5555555555555555444444555555555555555


Q ss_pred             cCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084          563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  598 (850)
Q Consensus       563 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  598 (850)
                      ++++..+..|.++++|+.|+|++|++++..+..|..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  134 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED  134 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence            555444444555555555555555555444444433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.9e-18  Score=167.71  Aligned_cols=155  Identities=28%  Similarity=0.284  Sum_probs=105.2

Q ss_pred             cccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeC
Q 003084          504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL  583 (850)
Q Consensus       504 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  583 (850)
                      +.+.++.+++.++ .+|.+   -.++|+.|++++|.+++..|..|.++++|+.|+|++|++....+..|..+++|+.|+|
T Consensus        20 s~~~v~c~~~~l~-~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4556677666664 34431   1266777777777777666677777777777777777776555566677777777777


Q ss_pred             CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084          584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  663 (850)
Q Consensus       584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  663 (850)
                      ++|++++..+..|..+.                                                     +|++|+|++|
T Consensus        96 s~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N  122 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLV-----------------------------------------------------HLKELFMCCN  122 (229)
T ss_dssp             CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCcCCccChhHhCcch-----------------------------------------------------hhCeEeccCC
Confidence            77777766655554433                                                     6777777777


Q ss_pred             ccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCccc
Q 003084          664 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK  716 (850)
Q Consensus       664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  716 (850)
                      +++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       123 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            777 5666677777777777777777766666677777777777777777644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.1e-17  Score=187.01  Aligned_cols=189  Identities=30%  Similarity=0.359  Sum_probs=125.3

Q ss_pred             CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084          433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  512 (850)
Q Consensus       433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  512 (850)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++. +|   ..+++|+.|++++|.+++ +|.              
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~--------------  117 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE--------------  117 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--------------
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch--------------
Confidence            78888888888875 555442  678888888888773 44   346777777777777764 222              


Q ss_pred             cccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084          513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI  592 (850)
Q Consensus       513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  592 (850)
                                 +..  +|+.|++++|++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++++
T Consensus       118 -----------l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp  176 (571)
T 3cvr_A          118 -----------LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLP  176 (571)
T ss_dssp             -----------CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred             -----------hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcc
Confidence                       222  66666666666665 333   45667777777777764 333   4567777777777776532


Q ss_pred             CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcc
Q 003084          593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ  672 (850)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  672 (850)
                      +  |.  .                                                     +|+.|+|++|+|+ .+|. 
T Consensus       177 ~--l~--~-----------------------------------------------------~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          177 E--LP--E-----------------------------------------------------SLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             C--CC--T-----------------------------------------------------TCCEEECCSSCCS-SCCC-
T ss_pred             h--hh--C-----------------------------------------------------CCCEEECcCCCCC-chhh-
Confidence            2  32  1                                                     5777777777777 4555 


Q ss_pred             ccCCCCC-------CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084          673 IGNLTRI-------QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT  726 (850)
Q Consensus       673 ~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  726 (850)
                      |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            543  56       88888888887 46666667888888888888888888877776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.5e-17  Score=170.21  Aligned_cols=153  Identities=25%  Similarity=0.362  Sum_probs=120.9

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  602 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  602 (850)
                      .+..+++|+.|++++|++++..+  +..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.  ..+..    
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~----  132 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH----  132 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG----
T ss_pred             hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcC----
Confidence            36667888888888888886544  78888888888888888752  3478888888888888888753  12222    


Q ss_pred             cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEE
Q 003084          603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL  682 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  682 (850)
                                                                       +++|++|++++|++++.  ..+..+++|+.|
T Consensus       133 -------------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A          133 -------------------------------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             -------------------------------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence                                                             34788999999988865  578888999999


Q ss_pred             ECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084          683 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK  740 (850)
Q Consensus       683 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  740 (850)
                      ++++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++..
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            999999987655  8889999999999999985 34 488899999999999988763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=7.1e-17  Score=182.85  Aligned_cols=80  Identities=28%  Similarity=0.428  Sum_probs=36.9

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+++
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence            444444444444432  334444445555555554444333  44444555555555544432  234444455555555


Q ss_pred             CCcCcC
Q 003084          734 YNNLSG  739 (850)
Q Consensus       734 ~N~l~~  739 (850)
                      +|++++
T Consensus       206 ~N~l~~  211 (605)
T 1m9s_A          206 SQECLN  211 (605)
T ss_dssp             SEEEEC
T ss_pred             CCcCcC
Confidence            554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=2.7e-17  Score=169.99  Aligned_cols=185  Identities=22%  Similarity=0.335  Sum_probs=136.4

Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084          438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      .+..+.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+++                       
T Consensus        30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-----------------------   82 (291)
T 1h6t_A           30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-----------------------   82 (291)
T ss_dssp             HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-----------------------
T ss_pred             HhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-----------------------
Confidence            3444444332  2234566677777777766643  235666677777776666652                       


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                      . +  .+..+++|+.|++++|.+++.  ..+..+++|++|++++|++.+.  ..+..+++|+.|++++|++++.  ..+.
T Consensus        83 ~-~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~  153 (291)
T 1h6t_A           83 I-K--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS  153 (291)
T ss_dssp             C-G--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             C-c--ccccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc
Confidence            2 1  267788899999999988753  3488889999999999998854  4678889999999999988764  2232


Q ss_pred             cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084          598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT  677 (850)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  677 (850)
                      .                                                     +++|++|++++|++++..|  +..++
T Consensus       154 ~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l~~l~  178 (291)
T 1h6t_A          154 R-----------------------------------------------------LTKLDTLSLEDNQISDIVP--LAGLT  178 (291)
T ss_dssp             G-----------------------------------------------------CTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             c-----------------------------------------------------CCCCCEEEccCCccccchh--hcCCC
Confidence            2                                                     3489999999999986554  88999


Q ss_pred             CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084          678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG  715 (850)
Q Consensus       678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  715 (850)
                      +|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus       179 ~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          179 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            999999999999864 4 48899999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=8.8e-17  Score=182.10  Aligned_cols=166  Identities=25%  Similarity=0.362  Sum_probs=103.9

Q ss_pred             EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCc
Q 003084          388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  467 (850)
Q Consensus       388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  467 (850)
                      .+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.
T Consensus        25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            34444454443322  34566677777777766532 2 35666667777777666664433  5566666666666666


Q ss_pred             cccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084          468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  547 (850)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  547 (850)
                      +.+.  ..+..+++|+.|++++|.+.+                        ++  .+..+++|+.|+|++|.+++.  ..
T Consensus        99 l~~l--~~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l--~~  148 (605)
T 1m9s_A           99 IKDL--SSLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI--TV  148 (605)
T ss_dssp             CCCC--TTSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--GG
T ss_pred             CCCC--hhhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--hh
Confidence            6532  245555566666665555542                        11  456677788888888877755  55


Q ss_pred             ccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc
Q 003084          548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  591 (850)
Q Consensus       548 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  591 (850)
                      +..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++++.
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            7777788888888887776555  77777777777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=2.6e-16  Score=151.53  Aligned_cols=111  Identities=30%  Similarity=0.432  Sum_probs=78.4

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            67777777777777777777777888888888888877777777778888888888888887777777888888888888


Q ss_pred             CCcCcCCCCCCccccCC-CCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFAT-FNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~-~~~~~~~~n~~~c~~~  766 (850)
                      +|+++|.++.  ..+.. +....+.++...|..|
T Consensus       135 ~N~l~c~c~l--~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          135 SNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCccCcCcc--hHHHHHHHHcCCCCCCCCCCCC
Confidence            8888776653  11211 2222344555566554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=5e-17  Score=165.09  Aligned_cols=168  Identities=20%  Similarity=0.233  Sum_probs=133.2

Q ss_pred             ccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084          505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  584 (850)
Q Consensus       505 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  584 (850)
                      +..++++++.+++..   .+..+++|+.|++++|.++.. + .+..+++|+.|++++|++++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            334444444443222   466778899999999988854 4 68889999999999999986554  8889999999999


Q ss_pred             CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084          585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  664 (850)
Q Consensus       585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  664 (850)
                      +|++++..+...                                                        ++|++|++++|+
T Consensus        94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~  117 (263)
T 1xeu_A           94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE  117 (263)
T ss_dssp             SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred             CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence            999876433211                                                        279999999999


Q ss_pred             cccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          665 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      +++.  ..+..+++|+.|++++|++++. + .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       118 l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          118 LRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9864  3688999999999999999865 3 688899999999999999876  67889999999999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=9.2e-17  Score=155.69  Aligned_cols=154  Identities=18%  Similarity=0.248  Sum_probs=122.3

Q ss_pred             CCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084          525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES  604 (850)
Q Consensus       525 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  604 (850)
                      ..+++|+.|++++|.++. +| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..++    
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~----  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT----  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence            456788889999888883 44 5788889999999988765  234688889999999999988876666665533    


Q ss_pred             cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEEC
Q 003084          605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  684 (850)
                                                                       +|++|++++|++++..|..+..+++|++|++
T Consensus       113 -------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          113 -------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             -------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             -------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                             7999999999998777888999999999999


Q ss_pred             cCCc-CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084          685 SHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG  739 (850)
Q Consensus       685 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  739 (850)
                      ++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998 65 445 68889999999999999985 34 78889999999999998753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=4e-17  Score=172.39  Aligned_cols=221  Identities=13%  Similarity=0.080  Sum_probs=118.7

Q ss_pred             CCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084          431 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL  510 (850)
Q Consensus       431 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l  510 (850)
                      |++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+.....               
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~---------------  163 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF---------------  163 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT---------------
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc---------------
Confidence            55666666655 55544445555566666666666555555555555555555444433211000               


Q ss_pred             cCcccccccCccccCCCCCCc-EEECcCCcCCCCcCcc-c---cCCCCCCEEECcCCcCccCCchhc-cCCCCCCEEeCC
Q 003084          511 SKNMLHGQLKEGTFFNCSSLV-TLDLSYNYLNGSIPDW-I---DGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLS  584 (850)
Q Consensus       511 ~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~---~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls  584 (850)
                           ...+...+|.++..|+ .+.+....   .++.. +   ....+++.+.+.++-.. .....+ ..+++|+.++++
T Consensus       164 -----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~  234 (329)
T 3sb4_A          164 -----KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDIS  234 (329)
T ss_dssp             -----STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECT
T ss_pred             -----cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECC
Confidence                 0112222444555554 33333211   11111 1   12344555555443211 111111 125666667776


Q ss_pred             CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084          585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  664 (850)
Q Consensus       585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  664 (850)
                      +|+++.+.+.+|.++.                                                     +|++|+|++| 
T Consensus       235 ~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~~n-  260 (329)
T 3sb4_A          235 KTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLPHN-  260 (329)
T ss_dssp             TBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCTT-
T ss_pred             CCCcceecHhhhhCCC-----------------------------------------------------CCCEEECCcc-
Confidence            6666666666666544                                                     5666777666 


Q ss_pred             cccCCCccccCCCCCC-EEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEE
Q 003084          665 LVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI  731 (850)
Q Consensus       665 l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  731 (850)
                      ++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5555566677777777 777776 66656667777777777777777777766666777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.4e-17  Score=172.95  Aligned_cols=259  Identities=12%  Similarity=0.093  Sum_probs=173.7

Q ss_pred             CCCCCeeeccCCcCc--ccCCcCCCCCCCCcEEECcCCCCCCCCcccccC--------CCCCcEEECCCCccccCcchhc
Q 003084          407 LRNLRWLLLEGNHFV--GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN--------LKGLQHIVMPKNHLEGPIPVEF  476 (850)
Q Consensus       407 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~  476 (850)
                      +++|+.|+|++|++.  ...+..+   +.+..+.+..+.   +.+..|.+        +++|+.+++.+ .++.+...+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            555666666666655  2221122   123444444443   23345556        88888888887 7776777778


Q ss_pred             cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCC----cCCCCcCccccCCC
Q 003084          477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN----YLNGSIPDWIDGLS  552 (850)
Q Consensus       477 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~  552 (850)
                      .+|++|+.+++++|.+.                        .++..+|.++.++..+....+    .........|.++.
T Consensus       121 ~~~~~L~~l~l~~n~i~------------------------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAP------------------------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             TTCTTCCEEEBCCSSCC------------------------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             hcCcccceEEcCCCCcc------------------------ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            88888888888887765                        233346777777766666552    22333445677777


Q ss_pred             CCC-EEECcCCcCccCCchhc----cCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084          553 QLS-HLNLAHNNLEGEVPIQL----CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  627 (850)
Q Consensus       553 ~L~-~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      +|+ .+.+....   .++..+    ....+++.+.+.++-.. .   .+..                             
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~---~~~~-----------------------------  220 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-A---DFKL-----------------------------  220 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-H---HHHH-----------------------------
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-H---HHHH-----------------------------
Confidence            777 55554332   112111    12456667766654110 0   0000                             


Q ss_pred             hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCC-EE
Q 003084          628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE-SL  706 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L  706 (850)
                                          ....+++|++|+|++|+++.+.+..|.++++|+.|+|++| ++.+.+.+|.++++|+ .+
T Consensus       221 --------------------l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          221 --------------------IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             --------------------HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             --------------------HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence                                0011458999999999999888888999999999999998 8888889999999999 99


Q ss_pred             ECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCcc
Q 003084          707 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS  754 (850)
Q Consensus       707 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~  754 (850)
                      ++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|..+..++.+
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            9999 7887888999999999999999999997777777666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.2e-15  Score=165.35  Aligned_cols=328  Identities=14%  Similarity=0.132  Sum_probs=171.0

Q ss_pred             hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCC
Q 003084          329 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR  408 (850)
Q Consensus       329 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  408 (850)
                      .+|..+.+|+++.+..+ ++.+...+|.++.+|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.++.
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            33333344444444321 33233334444444444444332 33 344444444444444444322 2223333444443


Q ss_pred             CCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEecc
Q 003084          409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS  488 (850)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  488 (850)
                      .++.......  ......+|.+|++|+.+.+.++. ..+....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+.
T Consensus       141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            2222211111  11233456666666666665443 2244455666666666666554 333445566666777666665


Q ss_pred             CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC
Q 003084          489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV  568 (850)
Q Consensus       489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  568 (850)
                      .+... .....+...+|+.+.+....  ..+...+|.++..++.+.+..+... +....|.++..++.+....+.+   .
T Consensus       217 ~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~  289 (394)
T 4fs7_A          217 NSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---P  289 (394)
T ss_dssp             TTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---C
T ss_pred             CCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---c
Confidence            54322 22223334556666554332  1344446777777777777765433 5556677777777777665543   2


Q ss_pred             chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084          569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ  648 (850)
Q Consensus       569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (850)
                      ...|..+.+|+.+.+.++ +..+...+|.++.                                                
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~------------------------------------------------  320 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT------------------------------------------------  320 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT------------------------------------------------
T ss_pred             cccccccccccccccccc-cceechhhhcCCC------------------------------------------------
Confidence            345666777777777543 4555555555543                                                


Q ss_pred             hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084          649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA  728 (850)
Q Consensus       649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  728 (850)
                           +|+++++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++ .+..+|.++++|+
T Consensus       321 -----~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          321 -----SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             -----TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             -----CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence                 5666666533 55455566777777777777655 55555666777777777776544 22 2334555555554


Q ss_pred             E
Q 003084          729 I  729 (850)
Q Consensus       729 ~  729 (850)
                      .
T Consensus       392 ~  392 (394)
T 4fs7_A          392 W  392 (394)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=1.9e-15  Score=162.54  Aligned_cols=248  Identities=17%  Similarity=0.208  Sum_probs=161.2

Q ss_pred             CcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCc
Q 003084          425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS  504 (850)
Q Consensus       425 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  504 (850)
                      ..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.+++++|.+.......|...+
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~  204 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG  204 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence            3344443 4555555443 333444444443 455555553 34444455566666666666666655555555555556


Q ss_pred             ccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084          505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  584 (850)
Q Consensus       505 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  584 (850)
                      |+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.+...+|.+|++|+.+++.
T Consensus       205 L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          205 IEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred             cCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence            666666533 2 2556668888888999988874 55566677777 688888884 45665667788888889988888


Q ss_pred             CCcCC-----ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEE
Q 003084          585 DNNLH-----GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD  659 (850)
Q Consensus       585 ~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  659 (850)
                      +|.+.     .+.+.+|.++.                                                     +|+.++
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c~-----------------------------------------------------~L~~l~  306 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGCP-----------------------------------------------------KLARFE  306 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTCT-----------------------------------------------------TCCEEC
T ss_pred             CccccCCcccEECHHHhhCCc-----------------------------------------------------cCCeEE
Confidence            77654     34445555443                                                     678888


Q ss_pred             ccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEccCCcC
Q 003084          660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNL  737 (850)
Q Consensus       660 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l  737 (850)
                      +. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+
T Consensus       307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            87 4466566677888888888888554 666677788888 888888888877766666777764 667777766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=3.5e-16  Score=150.67  Aligned_cols=115  Identities=26%  Similarity=0.359  Sum_probs=108.1

Q ss_pred             cCCeEEccCCccccCCCc-cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084          654 LLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  732 (850)
                      .+++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            689999999999977665 4899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          733 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       733 ~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      ++|++++.+|..+..+..+..+.+++||+.|+|++.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            999999999998899999999999999999999853

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=4.3e-16  Score=149.88  Aligned_cols=114  Identities=23%  Similarity=0.378  Sum_probs=106.0

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      .|++|++++|+++ .+|..|.++++|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            6999999999998 678899999999999999999998888999999999999999999999888999999999999999


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      +|.+++..+..+..+..+..+.+++|||.|+|++.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            99999877777788899999999999999999764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=3e-15  Score=161.04  Aligned_cols=265  Identities=13%  Similarity=0.157  Sum_probs=146.6

Q ss_pred             CCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEE
Q 003084          359 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY  438 (850)
Q Consensus       359 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (850)
                      ..++.+.+.+ .++ .++...|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            3344444433 233 4444444443 4555555443 444444445443 455555554 34444445566666666666


Q ss_pred             CcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccc
Q 003084          439 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ  518 (850)
Q Consensus       439 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  518 (850)
                      +.+|.++.+....|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..                       
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I-----------------------  240 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI-----------------------  240 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE-----------------------
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc-----------------------
Confidence            666666544444444 466666666533 54455566666667776666553 2222                       


Q ss_pred             cCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCc-----cCCchhccCCCCCCEEeCCCCcCCccCC
Q 003084          519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE-----GEVPIQLCRLNQLQLLDLSDNNLHGLIP  593 (850)
Q Consensus       519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  593 (850)
                       +..+|.+ .+|+.+.+. +.++.+...+|.+|++|+.+++.+|.+.     .+.+.+|.+|++|+.+++. +.+..+..
T Consensus       241 -~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~  316 (401)
T 4fdw_A          241 -GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ  316 (401)
T ss_dssp             -CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT
T ss_pred             -ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh
Confidence             2223433 344444442 2233333444555555555555444432     3445566666666666666 33555555


Q ss_pred             CCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccc
Q 003084          594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI  673 (850)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  673 (850)
                      .+|.++.                                                     +|+.++|..+ ++.+.+.+|
T Consensus       317 ~aF~~c~-----------------------------------------------------~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          317 GLLGGNR-----------------------------------------------------KVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCC-----------------------------------------------------SCCEEEECTT-CCEECTTSS
T ss_pred             hhhcCCC-----------------------------------------------------CccEEEECcc-ccEEcHHhC
Confidence            5565544                                                     5667777443 555566778


Q ss_pred             cCCCCCCEEECcCCcCCccCcccCCCC-CCCCEEECcCCcCc
Q 003084          674 GNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLS  714 (850)
Q Consensus       674 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~  714 (850)
                      .++ +|+.+++++|.+....+..|.++ ..++.|++..+.+.
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            888 88888888888776667777777 36778887776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=5e-16  Score=150.46  Aligned_cols=153  Identities=15%  Similarity=0.260  Sum_probs=95.8

Q ss_pred             CCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcC
Q 003084           28 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM  107 (850)
Q Consensus        28 ~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l  107 (850)
                      +.+++|++|++++|.+...  +.+.. +++|++|++++|.+.. ++  .+.++++|++|++  ++|.+.+..+..+.. +
T Consensus        41 ~~l~~L~~L~l~~n~i~~l--~~l~~-l~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~l--~~n~l~~~~~~~l~~-l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL--TGIEY-AHNIKDLTINNIHATN-YN--PISGLSNLERLRI--MGKDVTSDKIPNLSG-L  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC--TTGGG-CTTCSEEEEESCCCSC-CG--GGTTCTTCCEEEE--ECTTCBGGGSCCCTT-C
T ss_pred             hhcCCccEEeccCCCccCh--HHHhc-CCCCCEEEccCCCCCc-ch--hhhcCCCCCEEEe--ECCccCcccChhhcC-C
Confidence            4566667777777666633  25666 6677777777765542 22  4666677777777  666666555555655 6


Q ss_pred             CCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc-cccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084          108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  186 (850)
Q Consensus       108 ~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~  186 (850)
                      ++|++|++++|.+++   .. +..+..+++|++|++++|+ +. .++ .+.++++|++|++++|.++ .++  .+..+++
T Consensus       112 ~~L~~L~Ls~n~i~~---~~-~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~  182 (197)
T 4ezg_A          112 TSLTLLDISHSAHDD---SI-LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR--GIEDFPK  182 (197)
T ss_dssp             TTCCEEECCSSBCBG---GG-HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT--TGGGCSS
T ss_pred             CCCCEEEecCCccCc---Hh-HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH--HhccCCC
Confidence            777777777776654   22 2356667777777777776 44 333 4677777777777777776 444  4677777


Q ss_pred             CCeEECcCCcCc
Q 003084          187 IEELRLSNNHFR  198 (850)
Q Consensus       187 L~~L~L~~n~~~  198 (850)
                      |++|++++|++.
T Consensus       183 L~~L~l~~N~i~  194 (197)
T 4ezg_A          183 LNQLYAFSQTIG  194 (197)
T ss_dssp             CCEEEECBC---
T ss_pred             CCEEEeeCcccC
Confidence            777777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=5.5e-15  Score=160.14  Aligned_cols=332  Identities=14%  Similarity=0.164  Sum_probs=178.9

Q ss_pred             CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCccccc
Q 003084          277 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG  356 (850)
Q Consensus       277 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  356 (850)
                      +....|.+|++|+.+.+.. .++.....+|.+|++|+.+++..+ ++ .++..+|..+++|+.+.+..+ +......+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence            3344456666677766653 355555566667777777777544 33 555666666666666555433 3334444555


Q ss_pred             CCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcE
Q 003084          357 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG  436 (850)
Q Consensus       357 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  436 (850)
                      ++..++.....  .+. .+....|.+|.+|+.+.+.++. .......|.++.+|+.+.+..+ +......+|.++..|+.
T Consensus       138 ~~~~~~~~~~~--~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          138 GCDFKEITIPE--GVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TCCCSEEECCT--TCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             cccccccccCc--ccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            55433222221  222 4555556666667766665442 3344555666666666666554 33344455666666666


Q ss_pred             EECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccc
Q 003084          437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH  516 (850)
Q Consensus       437 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~  516 (850)
                      +.+..+...  +........+|+.+.+... ++.+....|..+..++.+.+..+..                        
T Consensus       213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~------------------------  265 (394)
T 4fs7_A          213 MEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL------------------------  265 (394)
T ss_dssp             CCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC------------------------
T ss_pred             eecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc------------------------
Confidence            665544321  1222333455666655433 2223344555666666666554422                        


Q ss_pred             cccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCc
Q 003084          517 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  596 (850)
Q Consensus       517 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  596 (850)
                       .+....|..+..++.+....+.+.   ...|.++.+|+.+.+.++ ++.+...+|.++++|+.+++.++ ++.+...+|
T Consensus       266 -~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  339 (394)
T 4fs7_A          266 -RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF  339 (394)
T ss_dssp             -EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred             -eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence             222335556666666555544322   234556666666666543 44344555666666666666533 555555555


Q ss_pred             ccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCC
Q 003084          597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL  676 (850)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  676 (850)
                      .++.                                                     +|+++++..+ ++.+...+|.++
T Consensus       340 ~~c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          340 RGCT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             TTCT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTTC
T ss_pred             cCCC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhCC
Confidence            5544                                                     5666666554 544555667777


Q ss_pred             CCCCEEECcCCcCCccCcccCCCCCCCCEE
Q 003084          677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESL  706 (850)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  706 (850)
                      ++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            77777777654 23 234567777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=9.7e-19  Score=197.04  Aligned_cols=77  Identities=23%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC-cccCCCCCCCCEEECcCCcCcccCCh---hhhcCCCCCE
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIPR---QLVDLNTLAI  729 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~  729 (850)
                      +|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..++.+++|+.|+|++|++++.+|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            45555555555554 44 5666777777777777777665 66777777777777777777655442   2334677777


Q ss_pred             EEc
Q 003084          730 FIV  732 (850)
Q Consensus       730 L~l  732 (850)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=4.2e-16  Score=158.25  Aligned_cols=169  Identities=18%  Similarity=0.222  Sum_probs=104.0

Q ss_pred             CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084          410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD  489 (850)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  489 (850)
                      +..++++++.+.+..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|+.|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334444444443221  23444455555555554442 22 34445555555555555544332  45555555555555


Q ss_pred             CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc
Q 003084          490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP  569 (850)
Q Consensus       490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  569 (850)
                      |++++.. .... ++|+.|++++|.+++. +  .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.  
T Consensus        95 N~l~~l~-~~~~-~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKNLN-GIPS-ACLSRLFLDNNELRDT-D--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSCCT-TCCC-SSCCEEECCSSCCSBS-G--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCCcC-cccc-CcccEEEccCCccCCC-h--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            5554322 2222 5566666666665442 2  578889999999999999865 3 688899999999999999866  


Q ss_pred             hhccCCCCCCEEeCCCCcCCccCC
Q 003084          570 IQLCRLNQLQLLDLSDNNLHGLIP  593 (850)
Q Consensus       570 ~~l~~l~~L~~L~Ls~n~l~~~~~  593 (850)
                      ..+..+++|+.|++++|++...+.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             HHhccCCCCCEEeCCCCcccCCcc
Confidence            678889999999999999876643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=3.4e-18  Score=192.58  Aligned_cols=88  Identities=28%  Similarity=0.384  Sum_probs=73.8

Q ss_pred             ccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC-ChhhhcCCCCCEEE
Q 003084          653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIFI  731 (850)
Q Consensus       653 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  731 (850)
                      ++|+.|+|++|.++ .+|..|+++++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            37888888888888 678888888888888888888886 56 7888888888888888888776 88888888888888


Q ss_pred             ccCCcCcCCCCC
Q 003084          732 VAYNNLSGKIPE  743 (850)
Q Consensus       732 l~~N~l~~~~p~  743 (850)
                      +++|++++.+|.
T Consensus       540 L~~N~l~~~~~~  551 (567)
T 1dce_A          540 LQGNSLCQEEGI  551 (567)
T ss_dssp             CTTSGGGGSSSC
T ss_pred             ecCCcCCCCccH
Confidence            888888877665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.6e-15  Score=141.41  Aligned_cols=86  Identities=23%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC-cccCCCCCCCCEEECcCCcCcccCC---hhhhcCCCCCE
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI  729 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~  729 (850)
                      +|++|++++|++++.+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            5666666666666556666666777777777777776542 2567777777777777777775544   46777777777


Q ss_pred             EEccCCcCcC
Q 003084          730 FIVAYNNLSG  739 (850)
Q Consensus       730 L~l~~N~l~~  739 (850)
                      |++++|.+..
T Consensus       152 L~l~~n~~~~  161 (168)
T 2ell_A          152 LDGYDREDQE  161 (168)
T ss_dssp             ETTEETTSCB
T ss_pred             ecCCCCChhh
Confidence            7777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=6.5e-15  Score=141.57  Aligned_cols=89  Identities=29%  Similarity=0.305  Sum_probs=74.3

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            67777777777777777778888888888888888888888888888899999999999887666778889999999999


Q ss_pred             CCcCcCCCC
Q 003084          734 YNNLSGKIP  742 (850)
Q Consensus       734 ~N~l~~~~p  742 (850)
                      +|++.|.+.
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            999987655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=8.2e-15  Score=139.24  Aligned_cols=90  Identities=23%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            67777777777776666667788888888888888887777777888888888888888886666667778888888888


Q ss_pred             CCcCcCCCCC
Q 003084          734 YNNLSGKIPE  743 (850)
Q Consensus       734 ~N~l~~~~p~  743 (850)
                      +|++.|.+|.
T Consensus       133 ~N~~~~~~~~  142 (177)
T 2o6r_A          133 TNPWDCSCPR  142 (177)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCeeccCcc
Confidence            8888877763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.3e-15  Score=141.77  Aligned_cols=138  Identities=25%  Similarity=0.255  Sum_probs=105.8

Q ss_pred             CCCCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084          526 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES  604 (850)
Q Consensus       526 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  604 (850)
                      ..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            3467888888888887 56677777888888888888888755  66778888888888888887655544433      


Q ss_pred             cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC-CccccCCCCCCEEE
Q 003084          605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI-PPQIGNLTRIQTLN  683 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~  683 (850)
                                                                     +++|++|++++|++++.. +..+..+++|+.|+
T Consensus        94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence                                                           337888888888888542 26788889999999


Q ss_pred             CcCCcCCccCc---ccCCCCCCCCEEECcCCcCcccCCh
Q 003084          684 LSHNNLTGTIP---LTFSNLRHIESLDLSYNKLSGKIPR  719 (850)
Q Consensus       684 Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~  719 (850)
                      +++|.+++..+   ..+..+++|+.|++++|.+. .+|+
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999986655   47888999999999999887 4444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.3e-15  Score=137.51  Aligned_cols=81  Identities=22%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEECcCCcCcccCC---hhhhcCCCCCE
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI  729 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~  729 (850)
                      +|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..++.+++|+.|++++|++++..+   ..+..+++|+.
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            677777777777766677777788888888888888753 34677888888888888888886655   57788888888


Q ss_pred             EEccC
Q 003084          730 FIVAY  734 (850)
Q Consensus       730 L~l~~  734 (850)
                      |++++
T Consensus       145 L~l~d  149 (149)
T 2je0_A          145 LDGYD  149 (149)
T ss_dssp             ETTBC
T ss_pred             ccCCC
Confidence            87753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.3e-14  Score=137.80  Aligned_cols=113  Identities=24%  Similarity=0.270  Sum_probs=104.5

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            79999999999998777788999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|.+++..+..+..+..+..+.+++||+.|+|+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999997777666788899999999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=7.4e-16  Score=179.35  Aligned_cols=122  Identities=25%  Similarity=0.224  Sum_probs=82.9

Q ss_pred             cchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCC
Q 003084          472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL  551 (850)
Q Consensus       472 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  551 (850)
                      .+..+..++.|+.|++++|.+....+..+.+++|+.|+|++|.++ .+|. .+..+++|+.|+|++|+++ .+|..|.++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            445555666666666666666533333344555555555555554 4554 6778888888888888888 567788888


Q ss_pred             CCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          552 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       552 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                      ++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            88888888888887 5676788888888888888888877665553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=1.2e-15  Score=177.61  Aligned_cols=191  Identities=19%  Similarity=0.197  Sum_probs=105.7

Q ss_pred             CCCCEEeccCCcCCCCCCCCcCCCccc-----EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCC
Q 003084          480 DSLQILDISDNNISGSLPSCFYPLSIK-----QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL  554 (850)
Q Consensus       480 ~~L~~L~ls~n~l~~~~~~~~~~~~L~-----~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  554 (850)
                      +.++.|++.+|.+.......+....|+     .+++..|.+.  ++...+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            567888888888775433322222222     2233333332  33446778888888888888887 455556688888


Q ss_pred             CEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhh
Q 003084          555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE  634 (850)
Q Consensus       555 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (850)
                      ++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..+                                   
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-----------------------------------  292 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC-----------------------------------  292 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG-----------------------------------
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC-----------------------------------
Confidence            88888888888 67777888888888888888887 446655543                                   


Q ss_pred             hhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCC-CCEEECcCCcC
Q 003084          635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH-IESLDLSYNKL  713 (850)
Q Consensus       635 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l  713 (850)
                                        ++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+
T Consensus       293 ------------------~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          293 ------------------FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             ------------------TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ------------------CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence                              37888888888887 66777888888888888888888887777655322 22477888888


Q ss_pred             cccCChhhhcCCCCCEEEccCC
Q 003084          714 SGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       714 ~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      ++.+|..      |+.|+++.|
T Consensus       354 ~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          354 EIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             CCCCCCC---------------
T ss_pred             cCcCccc------cceeEeecc
Confidence            8777754      455566665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=4.9e-15  Score=136.33  Aligned_cols=128  Identities=26%  Similarity=0.292  Sum_probs=86.7

Q ss_pred             CCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084          528 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  606 (850)
Q Consensus       528 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  606 (850)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence            56677777777776 45566666777777777777777654  55666777777777777776544433322        


Q ss_pred             CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccC-CCccccCCCCCCEEECc
Q 003084          607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLS  685 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls  685 (850)
                                                                   +++|++|++++|++++. .+..+..+++|++|+++
T Consensus        87 ---------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           87 ---------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             ---------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             ---------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence                                                         23677777777777653 23667778888888888


Q ss_pred             CCcCCccCc---ccCCCCCCCCEEECcC
Q 003084          686 HNNLTGTIP---LTFSNLRHIESLDLSY  710 (850)
Q Consensus       686 ~N~l~~~~~---~~~~~l~~L~~L~Ls~  710 (850)
                      +|.+++..+   ..+..+++|+.||+++
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888876655   4677788888887763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.51  E-value=1.3e-12  Score=141.49  Aligned_cols=309  Identities=13%  Similarity=0.110  Sum_probs=138.2

Q ss_pred             cCcccccCCCCCCEEEccCCc---CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCc
Q 003084          350 SIPSSFGNVIFLQFLDLSNNK---LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ  426 (850)
Q Consensus       350 ~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  426 (850)
                      +...+|.++.+|+.+.+..|.   ++ .++..+|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ +......
T Consensus        78 Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~  154 (394)
T 4gt6_A           78 IGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADG  154 (394)
T ss_dssp             ECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             EhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccc
Confidence            333444444444444444331   33 344444444555554444332 23333444555555555555432 2223334


Q ss_pred             CCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCccc
Q 003084          427 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK  506 (850)
Q Consensus       427 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  506 (850)
                      .|..+.+|+.+.+..+ ++.+...+|. ...|+.+.+..+-. .....+|.++.+++................+......
T Consensus       155 ~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  231 (394)
T 4gt6_A          155 MFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG  231 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS
T ss_pred             ceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccc
Confidence            4555555555555443 2223333333 24455555544322 2334455556666655544433221110000000000


Q ss_pred             EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCC
Q 003084          507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN  586 (850)
Q Consensus       507 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  586 (850)
                      .           .....+.....+..+.+.. .++.+...+|.++..|+.+.+.++... +...+|.++++|+.+.+. +
T Consensus       232 ~-----------~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~  297 (394)
T 4gt6_A          232 D-----------YALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-S  297 (394)
T ss_dssp             C-----------EEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-T
T ss_pred             c-----------ccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-C
Confidence            0           0000111222333333332 122233345555666666665544332 444555566666666664 3


Q ss_pred             cCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc
Q 003084          587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV  666 (850)
Q Consensus       587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  666 (850)
                      .+..+...+|.++.                                                     +|+++++..+ ++
T Consensus       298 ~i~~I~~~aF~~c~-----------------------------------------------------~L~~i~lp~~-v~  323 (394)
T 4gt6_A          298 RITELPESVFAGCI-----------------------------------------------------SLKSIDIPEG-IT  323 (394)
T ss_dssp             TCCEECTTTTTTCT-----------------------------------------------------TCCEEECCTT-CC
T ss_pred             cccccCceeecCCC-----------------------------------------------------CcCEEEeCCc-cc
Confidence            34444444554433                                                     5666666543 44


Q ss_pred             cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCc
Q 003084          667 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN  736 (850)
Q Consensus       667 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  736 (850)
                      .+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+++.++...   ..++.....|+.+.+..|.
T Consensus       324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            344556777777777777543 55555667777777777777766543   1345556666666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.7e-14  Score=132.67  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcc--cCCCCCCCCEEECcCCcCcccCCh----hhhcCCCC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL--TFSNLRHIESLDLSYNKLSGKIPR----QLVDLNTL  727 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L  727 (850)
                      +|++|++++|++++..+..|..+++|+.|++++|+++ .+|.  .+..+++|+.|++++|+++ .+|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            5666666666666554444567777777777777775 3444  6777777777777777776 3454    37777888


Q ss_pred             CEEEccCCcCc
Q 003084          728 AIFIVAYNNLS  738 (850)
Q Consensus       728 ~~L~l~~N~l~  738 (850)
                      +.||+++|...
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            88888777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.1e-13  Score=129.86  Aligned_cols=110  Identities=24%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      ..+++++++|+++ .+|..+.  ++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4567888888877 4565553  678888888888887777778888888888888888887666677788888888888


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|++++..+..+..+..+..+.+++||+.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888887666666777777778888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=2.8e-12  Score=138.81  Aligned_cols=136  Identities=10%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             cCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084          519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  598 (850)
Q Consensus       519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  598 (850)
                      +...+|.++..|+.+.+..+... +...+|.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            34447888888888888765433 556778888888888886 4455566678888888888888754 66666667766


Q ss_pred             CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCC
Q 003084          599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR  678 (850)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  678 (850)
                      +.                                                     +|+++.+..+ ++.+...+|.++++
T Consensus       333 C~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          333 CE-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             CT-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             CC-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCC
Confidence            55                                                     7888888654 66566678999999


Q ss_pred             CCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084          679 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  714 (850)
Q Consensus       679 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  714 (850)
                      |+.+++.++...   ...+....+|+.+.+..|.+.
T Consensus       359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            999999888654   246777888988888777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=5.6e-14  Score=133.19  Aligned_cols=135  Identities=19%  Similarity=0.176  Sum_probs=109.1

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  602 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  602 (850)
                      .+..+++|+.|++++|.++.. +......++|+.|++++|.+++.  ..+..+++|++|++++|.+++.++..|..+   
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---   87 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL---   87 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC---
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC---
Confidence            466788999999999999854 54333344999999999999865  578889999999999999987765554443   


Q ss_pred             cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc--cccCCCCCC
Q 003084          603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP--QIGNLTRIQ  680 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~  680 (850)
                                                                        ++|++|++++|+++ .+|.  .+..+++|+
T Consensus        88 --------------------------------------------------~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           88 --------------------------------------------------PDLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             --------------------------------------------------TTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             --------------------------------------------------CCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence                                                              38999999999997 4555  788999999


Q ss_pred             EEECcCCcCCccCcc----cCCCCCCCCEEECcCCcCcc
Q 003084          681 TLNLSHNNLTGTIPL----TFSNLRHIESLDLSYNKLSG  715 (850)
Q Consensus       681 ~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~  715 (850)
                      .|++++|.++. .|.    .+..+++|+.||+++|.+..
T Consensus       117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999984 455    48889999999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=3.4e-13  Score=126.64  Aligned_cols=90  Identities=22%  Similarity=0.228  Sum_probs=84.9

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      .|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            79999999999998889999999999999999999998888889999999999999999998877889999999999999


Q ss_pred             CCcCcCCCCC
Q 003084          734 YNNLSGKIPE  743 (850)
Q Consensus       734 ~N~l~~~~p~  743 (850)
                      +|+++|.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999988764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.9e-13  Score=126.58  Aligned_cols=108  Identities=21%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777775 4555443  66777777777777666777777777777777777777655555667777777777777


Q ss_pred             cCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          736 NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       736 ~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      ++++..+..+..+..+..+.+.+||+.|.|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776555556666677777777777777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.6e-15  Score=147.02  Aligned_cols=154  Identities=23%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             CCCCCCcEEECcCCcCCCCcCc------cccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084          525 FNCSSLVTLDLSYNYLNGSIPD------WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  598 (850)
Q Consensus       525 ~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  598 (850)
                      ...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++.. |..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhhc
Confidence            3344556666666666655554      78888899999999998885 55 778888899999998887643 222211


Q ss_pred             CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCC
Q 003084          599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR  678 (850)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  678 (850)
                                                                           +++|++|++++|++++ +| .+..+++
T Consensus        92 -----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           92 -----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             -----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             -----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence                                                                 3478999999998885 34 6888889


Q ss_pred             CCEEECcCCcCCccCc-ccCCCCCCCCEEECcCCcCcccCChh----------hhcCCCCCEEEccCCcCc
Q 003084          679 IQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFIVAYNNLS  738 (850)
Q Consensus       679 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~  738 (850)
                      |+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|+.||  +|+++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9999999999885433 47888899999999999988766543          77888888886  66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.1e-12  Score=123.43  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      .|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            79999999999999889999999999999999999998877788999999999999999997777779999999999999


Q ss_pred             CCcCcCCCCC
Q 003084          734 YNNLSGKIPE  743 (850)
Q Consensus       734 ~N~l~~~~p~  743 (850)
                      +|++.+.++.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999987653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=1.2e-14  Score=140.90  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=116.1

Q ss_pred             ccCCCCCCEEECcCCcCccCCch------hccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccc
Q 003084          548 IDGLSQLSHLNLAHNNLEGEVPI------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI  621 (850)
Q Consensus       548 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (850)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++. | .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence            44566777888888888777665      899999999999999999873 3 4433                       


Q ss_pred             cCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCC
Q 003084          622 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR  701 (850)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  701 (850)
                                                    +++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..++
T Consensus        69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence                                          458999999999999 678788888999999999999996 45 688899


Q ss_pred             CCCEEECcCCcCcccCC-hhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          702 HIESLDLSYNKLSGKIP-RQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       702 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      +|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999986443 5789999999999999999887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=5.6e-12  Score=134.14  Aligned_cols=112  Identities=17%  Similarity=0.214  Sum_probs=88.9

Q ss_pred             cCCeEEccC-CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084          654 LLAGLDLSC-NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  732 (850)
                      +|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            799999996 999988888899999999999999999998888999999999999999999977777777666 999999


Q ss_pred             cCCcCcCCCCC-CccccCCCCccccCCCCCCCCCC
Q 003084          733 AYNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       733 ~~N~l~~~~p~-~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      .+|++.+.+.. ++..+.......+..+.+.|..|
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            99999876652 22222222333445567777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=9.8e-12  Score=132.26  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=98.5

Q ss_pred             CeEEccCC-ccccCCCccccCCCCCCEEECcC-CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          656 AGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       656 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      ..++.+++ +++ .+|. +..+++|+.|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            46799998 898 5787 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL  767 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  767 (850)
                      +|+|++.++..+..+. +..+.+.+|++.|+|++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999987777655554 88899999999999974

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.27  E-value=3.4e-10  Score=121.91  Aligned_cols=311  Identities=9%  Similarity=0.048  Sum_probs=141.2

Q ss_pred             CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCee
Q 003084          334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  413 (850)
Q Consensus       334 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  413 (850)
                      ..+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++ .++..+|.++ +|+.+.+..+ +......+|... +|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence            45677777654 344455666777777777777643 55 6666666655 5666655433 333333344432 56666


Q ss_pred             eccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084          414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  493 (850)
Q Consensus       414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  493 (850)
                      .+.++- .......|.++ +++.+.+..+ ++......+..+..++.+.+..+.........+. .......        
T Consensus       119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~--------  186 (379)
T 4h09_A          119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTI--------  186 (379)
T ss_dssp             ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSE--------
T ss_pred             cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccccce--------
Confidence            655432 21223334333 3444444322 2223333444455555444433221100000000 0000000        


Q ss_pred             CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084          494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  573 (850)
Q Consensus       494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  573 (850)
                        .........+..+.+.....  .+....+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.
T Consensus       187 --~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~  260 (379)
T 4h09_A          187 --LESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ  260 (379)
T ss_dssp             --EEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred             --ecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence              00000011222222221111  122224555555665555443 22233445555666666665544 3334445555


Q ss_pred             CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084          574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS  653 (850)
Q Consensus       574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  653 (850)
                      ++.+|+.+.+..+ +..+...+|..+.                                                     
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~-----------------------------------------------------  286 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCS-----------------------------------------------------  286 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCT-----------------------------------------------------
T ss_pred             eeehhcccccccc-ceecccccccccc-----------------------------------------------------
Confidence            5566666555432 3333333443332                                                     


Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL  724 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  724 (850)
                      +|+.+++.++.++.+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            5555555555555444555666666666666533 44444555666666666555433 443444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=5.5e-10  Score=120.23  Aligned_cols=305  Identities=12%  Similarity=0.110  Sum_probs=205.2

Q ss_pred             cCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCC
Q 003084          306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN  385 (850)
Q Consensus       306 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  385 (850)
                      +....+|+.+.+... ++ .++..+|..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .++..+|.++ +
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence            456678999999754 55 788888998999999999755 666777788887 6888887654 55 7888888755 8


Q ss_pred             CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCC------------Cccccc
Q 003084          386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK------------IPRWLG  453 (850)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~  453 (850)
                      |+.+.+..+ +.......|.++ +++.+.+..+ +.......|..+..++...+..+.....            ....+.
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            999999865 333444555554 6777776654 3445566788899999998876543211            111222


Q ss_pred             CCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEE
Q 003084          454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL  533 (850)
Q Consensus       454 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  533 (850)
                      .+..+..+.+..... ......+..+..                       ++.+.+..+-  ..+...+|.++..|+.+
T Consensus       192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~-----------------------l~~i~~~~~~--~~i~~~~f~~~~~L~~i  245 (379)
T 4h09_A          192 AAKTGTEFTIPSTVK-TVTAYGFSYGKN-----------------------LKKITITSGV--TTLGDGAFYGMKALDEI  245 (379)
T ss_dssp             TTCCCSEEECCTTCC-EECTTTTTTCSS-----------------------CSEEECCTTC--CEECTTTTTTCSSCCEE
T ss_pred             cccccccccccccee-EEeecccccccc-----------------------cceeeeccce--eEEccccccCCccceEE
Confidence            233333333322211 122233333444                       4444443321  23444577888888888


Q ss_pred             ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084          534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK  613 (850)
Q Consensus       534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  613 (850)
                      .+..+ ++.+...+|.++.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.             
T Consensus       246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-------------  310 (379)
T 4h09_A          246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-------------  310 (379)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-------------
T ss_pred             EcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC-------------
Confidence            88765 55466677888888888888654 5545666788888888888888888777777777755             


Q ss_pred             CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC
Q 003084          614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI  693 (850)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  693 (850)
                                                              +|++++|..+ ++.+...+|.++++|+.+.+..+ ++.+.
T Consensus       311 ----------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~  348 (379)
T 4h09_A          311 ----------------------------------------KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE  348 (379)
T ss_dssp             ----------------------------------------TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             ----------------------------------------CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence                                                    7888888654 55566678999999999988765 66666


Q ss_pred             cccCCCCCCC
Q 003084          694 PLTFSNLRHI  703 (850)
Q Consensus       694 ~~~~~~l~~L  703 (850)
                      ..+|.++..+
T Consensus       349 ~~aF~~c~~~  358 (379)
T 4h09_A          349 SGAFEGSSIT  358 (379)
T ss_dssp             TTTTTTSSCC
T ss_pred             hhHhhCCCCC
Confidence            7778776433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=3.9e-13  Score=143.05  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=96.0

Q ss_pred             CCCCCEEEcCCCCCcccchhhhhcc----CCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhh
Q 003084           30 FTNLEYLTLDDSSLHISLLQSIGSI----FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE  105 (850)
Q Consensus        30 l~~L~~L~Ls~n~i~~~~~~~l~~~----~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~  105 (850)
                      .++|++|+|++|.++......+...    .++|++|+|++|.+...........+++|++|+|  ++|.+++.....++.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~L--s~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL--QLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEEC--CSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhc--CCCCCCHHHHHHHHH
Confidence            3456666666666665433333321    2466677776666653322211233456677777  666665554444432


Q ss_pred             ----cCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC--
Q 003084          106 ----SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS--  175 (850)
Q Consensus       106 ----~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~--  175 (850)
                          ..++|++|++++|.++..+....+..+..+++|++|+|++|.+...    ++.++...++|++|+|++|.+++.  
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence                2466777777777765422222223445667777777777777643    245566667788888888777531  


Q ss_pred             --CCcccccCCCCCCeEECcCCcCc
Q 003084          176 --ISSSPLVHLTSIEELRLSNNHFR  198 (850)
Q Consensus       176 --i~~~~~~~l~~L~~L~L~~n~~~  198 (850)
                        +.. .+...++|++|+|++|.+.
T Consensus       229 ~~l~~-~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 LALAR-AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred             HHHHH-HHHhCCCCCEEeccCCCCC
Confidence              222 3445677888888888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=5.7e-13  Score=141.84  Aligned_cols=171  Identities=20%  Similarity=0.247  Sum_probs=121.9

Q ss_pred             cCCCCcEEeCCCCcCCCcccC---CcCC-CCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCC
Q 003084           54 IFPSLKNLSMSGCEVNGVLSG---QGFP-HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD  129 (850)
Q Consensus        54 ~~~~L~~L~Ls~~~~~~~~~~---~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~  129 (850)
                      .++.|++|+|++|.++.....   ..+. ..++|++|+|  ++|.+++.....+...+++|+.|++++|.++..+.....
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            467899999999998743221   0122 3479999999  888887776666665578899999999998752222222


Q ss_pred             cCC-CCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCC
Q 003084          130 QGL-CPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIP  200 (850)
Q Consensus       130 ~~l-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~  200 (850)
                      ..+ ...++|++|+|++|.++..    ++.++..+++|++|+|++|.+.+.    ++. .+...++|++|+|++|.++..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence            222 3568899999999998753    445567889999999999998632    233 567778999999999988732


Q ss_pred             C---CcccccCCCCccEEEccCCccccccc
Q 003084          201 V---SLEPLFNHSKLKIFDAKNNEINGEIN  227 (850)
Q Consensus       201 ~---~~~~l~~l~~L~~L~l~~n~~~~~~~  227 (850)
                      .   -...+..+++|+.|++++|.++....
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence            1   11234567889999999999876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=7.9e-09  Score=108.69  Aligned_cols=185  Identities=17%  Similarity=0.208  Sum_probs=115.6

Q ss_pred             CCCCEEeCCCCcCCc-cc-----cCccccCCCCCCCEEEcCCCCCcc---------cchhhhhccCCCCcEEeCCCCcCC
Q 003084            5 PSLNTLHLESNNFTA-TL-----TTTQELHNFTNLEYLTLDDSSLHI---------SLLQSIGSIFPSLKNLSMSGCEVN   69 (850)
Q Consensus         5 ~~L~~L~Ls~~~~~~-~~-----~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~l~~~~~~L~~L~Ls~~~~~   69 (850)
                      +.++.|.+......+ ..     ...+++.++++|+.|.+.+.....         .....+.. +|+|+.|+|++|.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCc
Confidence            457788887554431 10     002345678999999997653211         11233455 899999999988321


Q ss_pred             CcccCCcCCCCCcccEEecccCCcccccchhhHhhh-cCCCCcEEEccC--CCCCCCC-C-ccCCcCC--CCCCCCCEEE
Q 003084           70 GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSG--STLGTNS-S-RILDQGL--CPLAHLQELY  142 (850)
Q Consensus        70 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~-~l~~L~~L~ls~--n~i~~~~-~-~i~~~~l--~~l~~L~~L~  142 (850)
                       .++  .+ .+++|++|++  ..+.+.......+.. .+++|+.|+|+.  +...+.. . .+.+ .+  ..+++|++|+
T Consensus       186 -~l~--~~-~~~~L~~L~L--~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~  258 (362)
T 2ra8_A          186 -SIG--KK-PRPNLKSLEI--ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLG  258 (362)
T ss_dssp             -BCC--SC-BCTTCSEEEE--ECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEE
T ss_pred             -eec--cc-cCCCCcEEEE--ecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEe
Confidence             222  23 3789999999  677777666666652 389999999863  2222210 0 1111 22  3478899999


Q ss_pred             ccCCccccccCcccc---CCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCc
Q 003084          143 IDNNDLRGSLPWCLA---NTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFR  198 (850)
Q Consensus       143 L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~  198 (850)
                      |.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++. .+.++++|+.|++++|.++
T Consensus       259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred             CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence            988887754333332   467888888888887642    222 3456778888888888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=8.6e-09  Score=108.40  Aligned_cols=163  Identities=17%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc--CCCCCCEEeCCCC--cCCccCCCCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDN--NLHGLIPSCFDN  598 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n--~l~~~~~~~~~~  598 (850)
                      .+..+|+|+.|++++|.-. ..+. +. +++|+.|++..|.+.......+.  .+|+|+.|+|+.+  ...+..  .+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~  241 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV  241 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH
Confidence            4567788999999887311 1222 33 78899999988887654444444  6899999988632  211100  0000


Q ss_pred             CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc---C
Q 003084          599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG---N  675 (850)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~  675 (850)
                      ..                                            .......+++|++|+|++|.+.+..+..+.   .
T Consensus       242 l~--------------------------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          242 FR--------------------------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI  277 (362)
T ss_dssp             TG--------------------------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred             HH--------------------------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence            00                                            000011245788888888887643333332   4


Q ss_pred             CCCCCEEECcCCcCCccC----cccCCCCCCCCEEECcCCcCcccCChhhhc-CCCCCEEEccCCc
Q 003084          676 LTRIQTLNLSHNNLTGTI----PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNN  736 (850)
Q Consensus       676 l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~  736 (850)
                      +++|+.|+|+.|.+++..    +..+..+++|+.|++++|.++...-..+.. +  ...+++++++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            678888888888887532    333345688888888888877543333433 2  3456776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=4.2e-08  Score=92.95  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=45.6

Q ss_pred             CCCCCcccEEecccCCcccccchh----hHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEc--cCCcccc
Q 003084           77 FPHFKSLEHLDMRFARIALNTSFL----QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI--DNNDLRG  150 (850)
Q Consensus        77 ~~~l~~L~~L~L~~~~~~~~~~~~----~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L--~~n~l~~  150 (850)
                      +...++|++|+|  ++|.+.+...    ..+.. .+.|++|+|++|.|+..+.......+...+.|++|+|  ++|.+..
T Consensus        61 L~~~~~L~~L~L--s~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           61 LKTNTYVKKFSI--VGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HTTCCSCCEEEC--TTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHhCCCcCEEEC--cCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            344455555555  4555444332    22333 4566666666666654322222334455556666666  5565553


Q ss_pred             c----cCccccCCCCCCEEECCCCcC
Q 003084          151 S----LPWCLANTTSLRILDVSFNQL  172 (850)
Q Consensus       151 ~----~~~~~~~l~~L~~L~Ls~n~i  172 (850)
                      .    +...+...+.|++|++++|.+
T Consensus       138 ~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          138 NVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2    222333445555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=3.8e-08  Score=93.22  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=79.7

Q ss_pred             ccccCCCCCCCEEEcCCC-CCcccchh----hhhccCCCCcEEeCCCCcCCCcccC---CcCCCCCcccEEecccCCccc
Q 003084           24 TQELHNFTNLEYLTLDDS-SLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG---QGFPHFKSLEHLDMRFARIAL   95 (850)
Q Consensus        24 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~   95 (850)
                      ...+...+.|++|+|++| .+.+....    .+.. .++|++|+|++|.+......   ..+...+.|++|+|  ++|.+
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L--~~N~i  105 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV--ESNFI  105 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC--CSSCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC--cCCcC
Confidence            345667778888888887 77654333    3444 67788888888877532211   13445577888888  77777


Q ss_pred             ccchh----hHhhhcCCCCcEEEc--cCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc
Q 003084           96 NTSFL----QIIGESMPSLKYLSL--SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR  149 (850)
Q Consensus        96 ~~~~~----~~l~~~l~~L~~L~l--s~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~  149 (850)
                      .+...    ..+.. .+.|++|++  ++|.++..+.......+...+.|++|++++|.+.
T Consensus       106 ~~~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66543    33444 577888888  7788866333223345566688899999888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=2e-07  Score=85.43  Aligned_cols=83  Identities=13%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             CCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCC----CcccEEecccCCcc-cccchhhHhhh
Q 003084           32 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHF----KSLEHLDMRFARIA-LNTSFLQIIGE  105 (850)
Q Consensus        32 ~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l----~~L~~L~L~~~~~~-~~~~~~~~l~~  105 (850)
                      +|++||++++.+++.....+.. +++|++|+|++|. +++... ..++.+    ++|++|+|  ++|. +++.....+..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~L--s~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEI--ISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEE--ESCTTCCHHHHHHGGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEc--CCCCcCCHHHHHHHhc
Confidence            3555555555555444444444 5555555555553 322111 123332    24555555  4442 44444444544


Q ss_pred             cCCCCcEEEccCCC
Q 003084          106 SMPSLKYLSLSGST  119 (850)
Q Consensus       106 ~l~~L~~L~ls~n~  119 (850)
                       +++|++|++++|.
T Consensus       138 -~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 -FRNLKYLFLSDLP  150 (176)
T ss_dssp             -CTTCCEEEEESCT
T ss_pred             -CCCCCEEECCCCC
Confidence             5555555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=9.6e-07  Score=87.66  Aligned_cols=78  Identities=23%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             hccCCeEEccCCccccC--CCccccCCCCCCEEECcCCcCCccCcccCCCCC--CCCEEECcCCcCcccCCh-------h
Q 003084          652 LSLLAGLDLSCNKLVGH--IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR--HIESLDLSYNKLSGKIPR-------Q  720 (850)
Q Consensus       652 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~  720 (850)
                      ++.|++|+|++|++++.  +|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|++.+.+|+       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            55677777777777762  345556677777777777777754  2233333  777777777777665542       3


Q ss_pred             hhcCCCCCEEE
Q 003084          721 LVDLNTLAIFI  731 (850)
Q Consensus       721 l~~l~~L~~L~  731 (850)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55667776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=1.4e-06  Score=86.37  Aligned_cols=84  Identities=23%  Similarity=0.308  Sum_probs=63.7

Q ss_pred             EEccCCccc---cCCCccccCCCCCCEEECcCCcCCcc--CcccCCCCCCCCEEECcCCcCcccCChhhhcCC--CCCEE
Q 003084          658 LDLSCNKLV---GHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN--TLAIF  730 (850)
Q Consensus       658 L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  730 (850)
                      ++++.|...   ...+....++++|+.|+|++|+|++.  +|..+..+++|+.|+|++|+|++.  ..+..+.  .|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777433   22222235688999999999999973  456677899999999999999965  3344444  99999


Q ss_pred             EccCCcCcCCCCC
Q 003084          731 IVAYNNLSGKIPE  743 (850)
Q Consensus       731 ~l~~N~l~~~~p~  743 (850)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.84  E-value=5.9e-06  Score=75.67  Aligned_cols=85  Identities=8%  Similarity=0.182  Sum_probs=46.2

Q ss_pred             CCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcc-cccchhhHhhhc---CCCCcEEEccCCC-CCCCCCccCCc
Q 003084           56 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA-LNTSFLQIIGES---MPSLKYLSLSGST-LGTNSSRILDQ  130 (850)
Q Consensus        56 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~l~~~---l~~L~~L~ls~n~-i~~~~~~i~~~  130 (850)
                      .+|++||+++|.++...-. .+.++++|++|+|  ++|. +++.....++..   +++|++|++++|. ++..+  +  .
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L--~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l--~  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRL--CKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--I--I  133 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEE--ESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--H--H
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEe--CCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--H--H
Confidence            3566666666665543332 4566666666666  5553 555555555540   2356666666664 44311  1  1


Q ss_pred             CCCCCCCCCEEEccCCc
Q 003084          131 GLCPLAHLQELYIDNND  147 (850)
Q Consensus       131 ~l~~l~~L~~L~L~~n~  147 (850)
                      .+.++++|++|++++|.
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence            34456666666666663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.37  E-value=5.1e-05  Score=70.90  Aligned_cols=67  Identities=22%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CCCCcccEEecccCCcccccchhhHhhhc---CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC
Q 003084           78 PHFKSLEHLDMRFARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN  146 (850)
Q Consensus        78 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~~---l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n  146 (850)
                      ..-+.|+.|+|  ++|.+.+.....++..   -+.|+.|+|++|.|+..+......++..-+.|++|+|+++
T Consensus        67 ~~N~~L~~L~L--~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           67 CNSKHIEKFSL--ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTCSCCCEEEC--TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCCcCEEEc--cCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            33445555555  5555544333332211   3556666666666554333322334444445566666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=4.5e-05  Score=71.25  Aligned_cols=88  Identities=11%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             CCCCCCCEEEcCCC-CCcccchh----hhhccCCCCcEEeCCCCcCCCcccC---CcCCCCCcccEEecccCCcccccch
Q 003084           28 HNFTNLEYLTLDDS-SLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG---QGFPHFKSLEHLDMRFARIALNTSF   99 (850)
Q Consensus        28 ~~l~~L~~L~Ls~n-~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~   99 (850)
                      .+-+.|++|+|+++ .|.+....    ++.. -..|++|+|++|.+......   .++..-+.|++|+|  ..|.+.+..
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L--~~N~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV--ESNFLTPEL  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC--CSSBCCHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec--CCCcCCHHH
Confidence            34455556666553 55433222    3333 45566666666555422211   01223355666666  555555444


Q ss_pred             hhHhhhc---CCCCcEEEccCC
Q 003084          100 LQIIGES---MPSLKYLSLSGS  118 (850)
Q Consensus       100 ~~~l~~~---l~~L~~L~ls~n  118 (850)
                      ...+...   -+.|+.|+|+++
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCC
Confidence            4433332   244666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.26  E-value=0.00028  Score=61.66  Aligned_cols=61  Identities=21%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             CEEECcCCcCC-ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          680 QTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       680 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|++++|++.+...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            47888999887 35565543  578999999999997777888889999998888888776543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.10  E-value=0.00093  Score=58.27  Aligned_cols=57  Identities=23%  Similarity=0.253  Sum_probs=40.5

Q ss_pred             CeEEccCCccc-cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084          656 AGLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  714 (850)
Q Consensus       656 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  714 (850)
                      ..++.++++++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777776 24554433  36788888888888777777777888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	850
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.3 bits (220), Expect = 5e-20
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
           ++P         LD+ NN        +  + L +L    +  N +    P +F  ++ L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
            L LS N+L  E+P+ +      L         ++  +F+   +   +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG 140

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
               +      L  + + + N++  IP+  G    L  + +  N +          L++L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 483 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
             L +S N+IS            ++++HL+ N L          +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 542 G------SIPDWIDGLSQLSHLNLAHNNLE 565
                    P +    +  S ++L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.2 bits (212), Expect = 6e-19
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 20/294 (6%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           ++P+ L        L L NN ++        NLK L  +++  N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           + L +S N +   LP        +       +   +       N   +V L  +    +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602
                  G+ +LS++ +A  N+     I       L  L L  N +  +  +        
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662
                + +           + P       + E+     K +           +  + L  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 663 NKL------VGHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDL 708
           N +          P           ++L  N +      P TF  +    ++ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 1e-18
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
           D+ P     ++  N +       F N+  L  L L NNK++   P   A   V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 451
           S N LK        +L+ LR    E       +   L++   ++ L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 511
              +K L +I +   ++     +      SL  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 512 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG----- 566
                  +  G+  N   L  L L+ N L   +P  +     +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 567 -EVPIQLCRLNQLQLLDLSDNNLH--GLIPSCFDNTTLHES 604
              P    +      + L  N +    + PS F    +  +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
           L+ +  S+  L  ++P  L     +   L L NN +         +L+NL  L+L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH-------------------- 460
               P + +    L+ LYL+ N L     +    L+ L+                     
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 461 ---IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517
              +        G     F  +  L  + I+D NI+ ++P    P S+ ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 185

Query: 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 577
                +    ++L  L LS+N ++      +     L  L+L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 578 LQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
           +Q++ L +NN+  +  + F     +    +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 9/217 (4%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
                LDL  N +          L  L  L L +N +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
           L  L             + N                   +    +         +     
Sbjct: 91  LKELPEKMPKTLQELRVHENE------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
             + +  L+ + ++   +   IP   G    +  L+L  N +T     +   L ++  L 
Sbjct: 145 AFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 744
           LS+N +S      L +   L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 57/287 (19%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
              +LD+ +N I+                         +K+G F N  +L TL L  N +
Sbjct: 32  DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 541 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600
           +   P     L +L  L L+ N L+    +       LQ L + +N +  +  S F+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 660
                   ++P K              +    +     TT          +   L  L L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 661 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 720
             NK+       +  L  +  L LS N+++     + +N  H+  L L+ NKL  K+P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 721 LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 767
           L D   + +  +  NN+S              K +      L   P+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 51/291 (17%), Positives = 93/291 (31%), Gaps = 40/291 (13%)

Query: 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 167
           P    L L  + +    + I D     L +L  L + NN +    P   A    L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 168 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 227
           S NQL       P     +++ELR+  N     V        +++ + +   N +     
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 228 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 287
           E+ +     +L  + ++                             I   P  L  +   
Sbjct: 142 ENGAFQGMKKLSYIRIADT--------------------------NITTIPQGLPPS--- 172

Query: 288 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
           L  L+L  + +       +     L  L +S N+             P L   +++ N L
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKL 231

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 398
              +P    +  ++Q + L NN ++    +       N +  S S  SL  
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 28/261 (10%)

Query: 5   PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS 64
           P    L L++N  T       +  N  NL  L L ++ +      +       L+ L +S
Sbjct: 31  PDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS 87

Query: 65  GCEVNGVLSGQGFPHFKSLEHLDMRFARI--------------ALNTSFLQIIGESMPSL 110
             ++   L  +     + L   +    ++               L T+ L+  G    + 
Sbjct: 88  KNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 111 KYL-SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF 169
           + +  LS   +   +   + QGL P   L EL++D N +       L    +L  L +SF
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 170 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI----NGE 225
           N ++   + S        E   L  N+ ++      L +H  +++    NN I    + +
Sbjct: 205 NSISAVDNGSLANTPHLRE---LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 226 INESHSLTPKFQLKSLSLSSN 246
                  T K     +SL SN
Sbjct: 262 FCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 727
            +P  +        L+L +N +T      F NL+++ +L L  NK+S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 728 AIFIVAYNNLSGKIPEWTAQFATFNKSS 755
               ++ N L     +            
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 1e-19
 Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
            I  +     +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 451
            N  L+    +    L  L  L L+        P      ++L+ LYL +N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 511
             +L  L H+ +  N +       F  L SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 512 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 571
                  L         +L  L L+ N             + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 572 LCRLNQLQLLDLSDNNLHG 590
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 1e-14
 Identities = 56/294 (19%), Positives = 92/294 (31%), Gaps = 36/294 (12%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 483 QILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           + LD+SDN    S+ P+ F+ L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
               D    L  L+HL L  N +          L+ L  L L  N +  + P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 602 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661
                     +           P  +                           L  L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRA---------------------------LQYLRLN 233

Query: 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715
            N  V            +Q    S + +  ++P     L   +   L+ N L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 60/244 (24%), Positives = 83/244 (34%), Gaps = 4/244 (1%)

Query: 274 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 333
           I   P         L  L+L ++ LA            L  LD+S+N     +       
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           L  L   ++    L    P  F  +  LQ+L L +N L     D       NL  L L  
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHG 162

Query: 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 453
           N +          L +L  LLL  N      P +      L  LYL  NNLS      L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513
            L+ LQ++ +  N               LQ    S + +  SLP       +K+  L+ N
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--LAAN 279

Query: 514 MLHG 517
            L G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 7/242 (2%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
                VT       L  ++P  I   +    + L  N +             L +L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N L  +  + F    L E  + + +         +  G         L +     + +  
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---HTLHLDRCGLQELGP 122

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 705
                + +L     L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 123 GLFRGLAALQYL-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 706 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 765
           L L  N+++   P    DL  L    +  NNLS    E  A          + NP++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 766 PL 767
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 34/262 (12%)

Query: 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ------------------------ 171
           A  Q +++  N +            +L IL +  N                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 172 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 231
              S+  +    L  +  L L     +  +        + L+    ++N +    ++  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD--T 148

Query: 232 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 291
                 L  L L  N   SV    F    H L    L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 292 YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 351
              N+  A P    +   + L++L +++N +          +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 352 PSSFGNVIFLQFLDLSNNKLTG 373
           P             L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 60
                +L  L+L+ N   A    T    +  NL +L L  + +           F  L +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDT--FRDLGNLTHLFLHGNRISSV----PERAFRGLHS 178

Query: 61  LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           L       N V        F+ L  L   +      ++        + +L+YL L+    
Sbjct: 179 LDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND--- 234

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 174
             N      +     A LQ+    ++++  SLP  LA      +  ++ N L G
Sbjct: 235 --NPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.5 bits (215), Expect = 3e-19
 Identities = 64/290 (22%), Positives = 105/290 (36%), Gaps = 27/290 (9%)

Query: 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 367
              R+  LD+S  N     P                       IPSS  N+ +L FL + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 368 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427
                             L +L +++ ++ G I   +  ++ L  L    N   G +P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487
           +S   +L G+  + N +SG IP   G+   L   +    +             +L  +D+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547
           S N + G     F      Q              G      +L  LDL  N + G++P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH--GLIPSC 595
           +  L  L  LN++ NNL GE+P Q   L +  +   ++N       +P+C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 4e-17
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 34/292 (11%)

Query: 482 LQILDISDNNISG--SLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
            ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--- 168

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
              + S++   +     +   +   P       +  +          A            
Sbjct: 169 ---YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
                  +     ++G    +  L+L +N + GT+P   + L+ + SL++S+N       
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------- 278

Query: 719 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 770
                            NL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 279 -----------------NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.2 bits (183), Expect = 4e-15
 Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 34/293 (11%)

Query: 429 SKCSSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNH-LEGPIPVEFCRLDSLQIL 485
           ++   +  L L+  NL     IP  L NL  L  + +   + L GPIP    +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545
            I+  N+SG++P     +                   +  +  +LV +    N ++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 605
           D     S+L        N              L  +DLS N L G     F +    +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 665
           +   +          +S     +                              DL  N++
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL------------------------------DLRNNRI 256

Query: 666 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 718
            G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK     P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 13/281 (4%)

Query: 155 CLANTTSLRI--LDVSFNQLTGSISSSP-LVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 211
           C  +T + R+  LD+S   L         L +L  +  L +   +  +      +   ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 212 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 271
           L      +  ++G I +  S          S ++      T P  +     L        
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGN 159

Query: 272 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 331
           ++ G  P+     +     + +  + L G       +          N        +   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 332 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391
           D     ++   +  A D        N+     LDL NN++ G +P  L      L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275

Query: 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 432
           S N+L G I  +  +L+         N  +   P  L  C+
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 57/277 (20%), Positives = 91/277 (32%), Gaps = 5/277 (1%)

Query: 201 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 260
           V  +      ++   D     +        SL     L  L +          P  +   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 261 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 320
            +L    ++H  + G  P++L +  T +   +  N +L+G     I S   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159

Query: 321 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 380
              G IP   G          IS N L G IP +F N+         N           +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 381 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 440
                         +       ++   +NL  L L  N   G +PQ L++   L  L ++
Sbjct: 220 DKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 441 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC 477
            NNL G+IP+  GNL+         N      P+  C
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 4e-19
 Identities = 63/361 (17%), Positives = 119/361 (32%), Gaps = 25/361 (6%)

Query: 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194
           L  +  L  D   ++ S+   +    +L  ++ S NQLT       L  L  I       
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 195 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 254
                  +L  L   +         + +    N +        +  +S  S         
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 255 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF-----LYLVNDSLAGPFRLPIHSH 309
                      A L+ ++ +    N + + +   +      L   N+ ++     P+   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGIL 218

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
             L  L ++ N  +    +     L +L   +++ N +    P     +  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 370 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 429
           +++   P        NLE      N  +    S I +L+NL +L L  N+     P  +S
Sbjct: 274 QISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489
             + L+ L+  NN +S      L NL  +  +    N +    P     L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 490 N 490
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 9e-18
 Identities = 61/386 (15%), Positives = 115/386 (29%), Gaps = 43/386 (11%)

Query: 364 LDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
             L    +T  +    L      +  L      +K      +  L NL  +    N    
Sbjct: 27  TVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 80

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW------LGNLKGLQHIVMPKNHLEGPIPVEF 476
             P  L   + L  + +NNN ++   P           L   Q   +        +    
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 477 CRLDSLQILDISDNNISGSLPSCFYPLSI-------KQVHLSKNMLHGQLKEGTFFNCSS 529
              +++  +       S    S    ++          +       +           ++
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 530 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           L +L  + N ++   P  I   + L  L+L  N L+      L  L  L  LDL++N + 
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649
            L P              N   +       +                E     +      
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTAL-----------TNLELNENQLEDISPI 303

Query: 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 709
             L  L  L L  N +    P  + +LT++Q L  ++N ++     + +NL +I  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 710 YNKLSGKIPRQLVDLNTLAIFIVAYN 735
           +N++S   P  L +L  +    +   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 4e-16
 Identities = 75/409 (18%), Positives = 137/409 (33%), Gaps = 64/409 (15%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
             +   N    +     D + +L    + + ++DG        +  L  ++ SNN+LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 375 IP------------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 422
            P            ++  +  +       +   L                  L       
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
                +S  S L  L   +        + L NL  L+ + +  N           +L +L
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNL 199

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           + L  ++N IS   P      ++ ++ L+ N L      GT  + ++L  LDL+ N ++ 
Sbjct: 200 ESLIATNNQISDITPLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 255

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602
             P  + GL++L+ L L  N +    P+          L+ +       I +  + T L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662
             +NN                        I +I   ++           L+ L  L  + 
Sbjct: 314 LYFNN------------------------ISDISPVSS-----------LTKLQRLFFAN 338

Query: 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711
           NK+       + NLT I  L+  HN ++   PL  +NL  I  L L+  
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 56/350 (16%), Positives = 122/350 (34%), Gaps = 31/350 (8%)

Query: 1   MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI----SLLQSIGSIFP 56
           +    +L  ++  +N     LT    L N T L  + ++++ +      + L ++  +  
Sbjct: 62  VEYLNNLTQINFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 57  SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 116
               ++      N     +      ++  +       +L           +  L  L+  
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 117 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 176
                +++       L  L +L+ L   NN +    P      T+L  L ++ NQL    
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-- 233

Query: 177 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 236
               L  LT++ +L L+NN      +L PL   +KL       N+I+        ++P  
Sbjct: 234 -IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISN-------ISPLA 282

Query: 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 296
            L +L+      + +     + +   L    L    +    P   + + TKL+ L+  N+
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANN 339

Query: 297 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 346
            ++      + +   + +L   +N      P+     L  +    ++  A
Sbjct: 340 KVSDVS--SLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 7e-11
 Identities = 73/393 (18%), Positives = 126/393 (32%), Gaps = 58/393 (14%)

Query: 6   SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNL 61
            + TL  +       + +   +    NL  +   ++ L     +  L  +  I  +   +
Sbjct: 45  QVTTLQADRLG----IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 62  SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 121
           +      N             +  +D       LN   L     S  S      S   L 
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 122 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 181
             +     + L  L  L+ L I +N +       LA  T+L  L  + NQ++      PL
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT---PL 215

Query: 182 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241
             LT+++EL L+ N  +    +  L + + L   D  NN+I+                  
Sbjct: 216 GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAP-------------- 258

Query: 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 301
                          L    +L E +L   ++    P   L   T LE            
Sbjct: 259 ---------------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-----E 298

Query: 302 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361
              PI + K L +L +  NN     PV     L  L     + N +  S  SS  N+  +
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFANNKV--SDVSSLANLTNI 353

Query: 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394
            +L   +N+++   P         +  L L++ 
Sbjct: 354 NWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 22/294 (7%)

Query: 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 374
           LD++  N    +   +  +   ++ F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 61

Query: 375 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 434
               +   C  L+ LSL    L   I + +    NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 494
           +   LN +       + +          + + +L G                      S 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------SD 166

Query: 495 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSIPDWIDGLSQ 553
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607
           L  L +     +G + +       L  L ++ ++   +      N    E +  
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 459 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 518
           Q + +   +L   +         +       + +   L   F P  ++ + LS +++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 578
              G    CS L  L L    L+  I + +   S L  LNL+  +   E  +Q    +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNN----SSPDKPFKTSFSISGPQGSVEKKILE 634
           +L +L+ +               H S        S   K  + S   +  +       L+
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 635 IFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693
           + +          +   L+ L  L LS C  ++     ++G +  ++TL +      GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 694 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 730
            L    L H   L ++ +  +      + +     I+
Sbjct: 242 QLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 17/275 (6%)

Query: 190 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 249
           L L+  +   P     L +   +  F    + ++  + E  S     +++ + LS++  +
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF---RVQHMDLSNSVIE 59

Query: 250 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 309
             T    L    +L+   L  +++     N  L  N+ L  L L   S    F L     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYF-------NISMNALDGSIPSSFGNVIFLQ 362
              R  +++ +         +   +  +              N     + +       L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 363 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFV 421
            LDLS++ +              L+ LSLS    +       +  +  L+ L + G    
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 422 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 456
           G +         L+   +N ++ +      +GN K
Sbjct: 239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 12/255 (4%)

Query: 267 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHI 326
           +L+   +  +    LL               +  P      S  R++ +D+SN+  +   
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 327 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL-SNNKLTGEIPDHLAMCCVN 385
              I      L   ++    L   I ++      L  L+L   +  +      L   C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 386 LEFLSLSNNSLKGHIFSRIFSLRNLRW-------LLLEGNHFVGEIPQSLSKCSSLKGLY 438
           L+ L+LS          ++                  +               + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 439 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 497
            ++  L     +    L  LQH+ + +   +     +E   + +L+ L +      G+L 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 498 SCFYPLSIKQVHLSK 512
                L   Q++ S 
Sbjct: 243 LLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 14/273 (5%)

Query: 72  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 131
           L         S   +  R  R  ++    +    S   ++++ LS S +  ++   L   
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVST---LHGI 66

Query: 132 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV----SFNQLTGSISSSPLVHLTSI 187
           L   + LQ L ++   L   +   LA  ++L  L++     F++       S    L  +
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 247
                 +   +         + +  ++  +   +   + + S  +     L  L LS + 
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 248 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN-DSLAGPFRLPI 306
                  +  +  + L+   LS    I       L     L+ L +           L  
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK- 245

Query: 307 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 339
              + L  L ++ ++F       IG+     ++
Sbjct: 246 ---EALPHLQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 3/195 (1%)

Query: 2   GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 61
            S   +  + L ++    + T    L   + L+ L+L+   L   ++ ++     +L  L
Sbjct: 43  FSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRL 100

Query: 62  SMSGCEVNGVLSGQGFPHF-KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 120
           ++SGC      + Q        L+ L++ +            +     ++  L+LSG   
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 121 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 180
               S +          +     D+  L+            L+ L +S        +   
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 181 LVHLTSIEELRLSNN 195
           L  + +++ L++   
Sbjct: 221 LGEIPTLKTLQVFGI 235

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 7/208 (3%)

Query: 382 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 441
              +   ++    +L   +   +   ++   L L  N        +L   + L  L L+ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 442 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 501
             L+         L  L  + +  N L+    +         + D+S N ++        
Sbjct: 65  AELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALR 121

Query: 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 561
            L   Q    K      L  G       L  L L+ N L       ++GL  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 562 NNLEGEVPIQLCRLNQLQLLDLSDNNLH 589
           N+L   +P      + L    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             +S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 586 NNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644
             L  L            +  +N          +            ++  +     + + 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704
              +  +           N+L    P  +    +++ L+L++NNLT       + L +++
Sbjct: 125 ELQELYL---------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 705 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 737
           +L L  N L   IP+     + L    +  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 371
              ++    N    +P ++          ++S N L     ++      L  L+L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 372 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 431
             E+        + +      +++    +     +L  L  L +  N        +L   
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 491
             L+ LYL  N L    P  L     L+ + +  N+L          L++L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 492 ISGSLPSCFYPLSIKQVHLSKNMLH 516
           +       F    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
            +P  L K      L+L+ N L       L     L  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 601
             P  +    +L  L+LA+NNL       L  L  L  L L +N+L+ +    F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 8/188 (4%)

Query: 304 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 363
           LP    K    L +S N         +      L   N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           L   +          L    +    +   + +    +             L    + +  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 424 IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482
           +P  L   +          NNL+      L  L+ L  +++ +N L   IP  F     L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 483 QILDISDN 490
               +  N
Sbjct: 198 PFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (148), Expect = 2e-10
 Identities = 63/446 (14%), Positives = 117/446 (26%), Gaps = 33/446 (7%)

Query: 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLS 367
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 368 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 423
           +N+L       +   L      ++ LSL N  L G     + S       L E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 424 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 483
           +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 484 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543
                        P     L ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 544 IPDWIDGLSQLSHLNL-------AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG------- 649
             T L       S   K    + +      SV  +   + E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 650 --RVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS----- 698
             +  S+L  L L+   +       +   +     ++ L+LS+N L     L        
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 699 NLRHIESLDLSYNKLSGKIPRQLVDL 724
               +E L L     S ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (147), Expect = 2e-10
 Identities = 55/451 (12%), Positives = 120/451 (26%), Gaps = 22/451 (4%)

Query: 159 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLKIF 215
           +  ++ LD+   +L+ +  +  L  L   + +RL +              L  +  L   
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 216 DAKNNEINGEINESHS---LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 272
           + ++NE+             TP  +++ LSL +                 L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL------PTL 114

Query: 273 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 332
                 + LL +         + D      +L +              +     P     
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 333 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 392
            + +       +  L   +  S   +  L+                +     +L  L+L 
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 393 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 452
           +N L     + +          L           +       + L    +     +    
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 453 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512
              +G + +          +   + +  S      S  +   +       L I      +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LE 353

Query: 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGEV 568
           +    +L +G     S L  L L+   ++     S+   +     L  L+L++N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 569 PIQLCR-----LNQLQLLDLSDNNLHGLIPS 594
            +QL          L+ L L D      +  
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 6e-08
 Identities = 54/462 (11%), Positives = 118/462 (25%), Gaps = 30/462 (6%)

Query: 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRI 164
            ++ L +    L   S     + L  L   Q + +D+  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 165 LDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 220
           L++  N+L       +          I++L L N                 +     +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--------GAGCGVLSSTLRTL 111

Query: 221 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 280
               E++ S +L     L+ L               L +      +      ++   P++
Sbjct: 112 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 281 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 340
                +  +        L    +      + L+       +        I     SL   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 341 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
            +  N L     +     +      L    +            +     +  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 401 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 460
            + +                       +  CS        ++  S            + +
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--ACCSHFSSVLAQNRFLLELQISN 349

Query: 461 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG----SLPSCFYPL-SIKQVHLSKNML 515
             +    +             L++L ++D ++S     SL +      S++++ LS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 516 HGQ----LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553
                  L E        L  L L   Y +  + D +  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 52/448 (11%), Positives = 118/448 (26%), Gaps = 23/448 (5%)

Query: 32  NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS---GQGFPHFKSLEHLDM 88
           +++ L +    L  +    +  +    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 89  RFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 146
           R   +        LQ +      ++ LSL    L      +L   L  L  LQEL++ +N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 147 DLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 205
            L  +            +           S+S++    L S+   +       +  +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 206 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 265
                 L      +      +            + L        S+       ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 266 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 325
                  ++            +          L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 326 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD-------- 377
           +   + +    L    +   +   +  S F +V+      L        + D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 378 HLAMCCVNLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--- 430
            L      L  L L++  +       + + + +  +LR L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 431 --CSSLKGLYLNNNNLSGKIPRWLGNLK 456
                L+ L L +   S ++   L  L+
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 62/463 (13%), Positives = 128/463 (27%), Gaps = 42/463 (9%)

Query: 57  SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYL 113
            +++L +   E++     +  P  +  + + +    +    +  + I       P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAEL 60

Query: 114 SLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNNDLR----GSLPWCLANTTSLRILDVS 168
           +L  + LG      + QGL  P   +Q+L + N  L     G L   L    +L+ L +S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 169 FNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINE 228
            N L  +        L   +            +S       + +        E+    N+
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 229 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 288
            +    +   + L  S    +++            ++               L  N    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 289 EFL-YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347
             +  L    L    RL                +    +  +      SL    +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA--------MCCVNLEFLSLSNNSLKGH 399
                +       L+ L + +   T     H +        +  + +    L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 400 IFSRIFSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455
                     LR L L            +  +L    SL+ L L+NN L       L  +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--V 418

Query: 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498
           + ++                      L+ L + D   S  +  
Sbjct: 419 ESVRQ-----------------PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 105 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-----NT 159
           +    L+ L L+   +  +S   L   L     L+EL + NN L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 160 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 199
             L  L +     +  +          ++ L       R+
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 4/110 (3%)

Query: 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLN 558
           L I+ + +    L                 + L    L       I   +     L+ LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 559 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 608
           L  N L       + +  Q     +   +L     +      L  +    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 41/433 (9%), Positives = 90/433 (20%), Gaps = 21/433 (4%)

Query: 336 SLVYFNISMNAL-DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSL 391
            +   +I    L D         +   Q + L +  LT      ++        L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 392 SNNSLKGHIFSRIFSL-----RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 446
            +N L       +          ++ L L+     G     LS            +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL--- 119

Query: 447 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK 506
                      L    +                 S    +   + +          +S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566
            ++ +   +  Q  + +     +L          N      I             +N  G
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 567 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 626
           +V +       L                                  K    + +  G +G
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 627 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 686
           +       +         +       +       S          +     +I    L  
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-----LAQNRFLLELQISNNRLED 354

Query: 687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSGKIP 742
             +             +  L L+   +S      +   L+  ++L    ++ N L     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 743 EWTAQFATFNKSS 755
               +        
Sbjct: 415 LQLVESVRQPGCL 427

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 353 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
           + + N +  + LDL   K+   I  +L       + +  S+N +          LR L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG----KIPRWLGNLKGLQHIVMPKNHL 468
           LL+  N               L  L L NN+L           L +L  L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 469 EGPIPVEFCRLDSLQILD 486
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 671 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 730
            Q  N  R + L+L    +   I    + L   +++D S N++          L  L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 731 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLI 790
           +V  N +               +     N  +    L    SL +++          N  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 791 DMDSFFI 797
               + I
Sbjct: 129 HYRLYVI 135

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 20/318 (6%)

Query: 303 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 362
           RL     ++   L+++N          + ++ P L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 363 FLDLSNNKLTGEIP----------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412
             + +   L+   P              +  +         +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 472
           +    N              +      N+      +P  L ++    +I+     L+   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 473 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 532
            +     D+  +  + D   S    +           L +++    + E  F   S L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 533 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592
                N  +  I    D    L  LN+++N L  E+P    RL   + L  S N+L  + 
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVP 320

Query: 593 PSCFDNTTLHESYNNNSS 610
               +   LH  YN    
Sbjct: 321 ELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 253 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 312
              FL   +       +   +        + +N   +   L            I S    
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372
              ++   N   +    + D+ PSL   N+S N L   +P+       L+ L  S N L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 411
            E+P+       NL+ L +  N L+        S+ +LR
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 17/330 (5%)

Query: 133 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 192
           C      EL ++N  L  SLP    +   L  L  S N LT        +    ++   L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 193 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 252
                  P+      ++++L+      N    +I +  + + K                 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 253 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP---IHSH 309
             + L     L      +           L  + +               +        +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369
                L    +       + + D   + +              + F  +  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 370 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 429
             + EI         +LE L++SNN L             L  L+   NH   E+P+   
Sbjct: 271 ASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEVPELP- 323

Query: 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 459
              +LK L++  N L  + P    +++ L+
Sbjct: 324 --QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 56/337 (16%), Positives = 102/337 (30%), Gaps = 32/337 (9%)

Query: 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467
           R    L L        +P+       L+ L  + N+L+ ++P    +LK    +++  N+
Sbjct: 38  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLK---SLLVDNNN 89

Query: 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 527
           L+         L  L       NN    LP       +K + +  N L            
Sbjct: 90  LKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
                          +  + +  L  L  L   + +      +    L+   ++  ++  
Sbjct: 145 ----------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
                       T   + NN          S      + +    + E+ +  T       
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
               LS L       N     I         ++ LN+S+N L   +P     L     L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LI 310

Query: 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 744
            S+N L+ ++P    +L  L    V YN L  + P+ 
Sbjct: 311 ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 230 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 289
             LT  +   +L  +            +   +     EL       +    +    ++L 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 290 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 349
                 ++ +   R        L  L+VSNN        E+  + P L     S N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-A 317

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
            +P    N   L+ L +  N L  E PD       ++E L +++
Sbjct: 318 EVPELPQN---LKQLHVEYNPLR-EFPDIPE----SVEDLRMNS 353

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             +  +  +L    +  ++    + L+ +  +   +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT----- 640
           N L  + P            + N   D                   I +I          
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 641 -----KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 695
                 N                    +  +  I P +  LT++Q L LS N+++  +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR- 194

Query: 696 TFSNLRHIESLDLS 709
             + L++++ L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 3/163 (1%)

Query: 350 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 409
            IP           L L++N+L     D L     +L  L L  N L G   +      +
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469
           ++ L L  N       +       LK L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 470 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDS 481
           EIP+ +        L LN+N L       L G L  L  + + +N L G  P  F     
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541
           +Q L + +N I       F  L   +     +     +  G+F + +SL +L+L+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 588
            +          L   +L         P    ++  +Q+ DL  +  
Sbjct: 140 CNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 6/182 (3%)

Query: 429 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILD 486
           + C      +      L  +IPR +        +++  N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 546
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 547 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 606
             + L+ L+ LNLA N       +        +   L+        PS   +  + +  +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 607 NN 608
           + 
Sbjct: 180 SE 181

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 157 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 216
               +   +    + +T +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 217 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 276
            K+N+I       +          L+  +    S    K +     L+  +   +     
Sbjct: 70  LKDNQITDLAPLKN----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 277 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 336
                L   + L+ LYL  + +     L   ++ +   +  +  +    +          
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SK 174

Query: 337 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393
           L       N +    P    ++  L  + L NN+++   P        NL  ++L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 15/202 (7%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 586 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 645
           N +  L P            + N   +                  +I ++      +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 646 AYQGRVLSLLAGLDLSCNKLVGHI---------PPQIGNLTRIQTLNLSHNNLTGTIPLT 696
                +  +     L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 697 FSNLRHIESLDLSYNKLSGKIP 718
            ++L ++  + L  N++S   P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 18/210 (8%)

Query: 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568
              K+ +   +   T  +   + TL      +     + +  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 628
           P++         L  +       I       TL  +    +        S          
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 629 EKKILEIFEFTTKNIAYAYQGRVLSL---------LAGLDLSCNKLVGHIPPQIGNLTRI 679
           +   +      T     +     +S          L  L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLS 709
             ++L +N ++   PL  +N  ++  + L+
Sbjct: 198 IEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 14/196 (7%)

Query: 4   FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI-----SLLQSIGSIFPSL 58
              + TL          +TT + +    NL  L L D+ +       +L +         
Sbjct: 40  LDGITTLSAFGTG----VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 59  KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 118
              ++S       +        +  +   +                 ++  L  L+    
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 119 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 178
               N+       L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++     
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-- 211

Query: 179 SPLVHLTSIEELRLSN 194
            PL + +++  + L+N
Sbjct: 212 -PLANTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 496
           L+L + +L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 497 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL---NGSIPDWIDGLSQ 553
                   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 554 LSHL 557
           +S +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 542
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 543 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGL 591
                     Q   L L +N L+    IQ L    +L LL+L  N+L   
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 341 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 400
           +++   L  ++      ++ +  LDLS+N+L    P   A+ C+ +       +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 401 FSRIFSLRNLRWLLLEGNHFVG-EIPQSLSKCSSLKGLYLNNNNLSGK---IPRWLGNLK 456
              + +L  L+ LLL  N        Q L  C  L  L L  N+L  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 457 GLQHIV 462
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 38/154 (24%)

Query: 557 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 616
           L+LAH +L   V   L +L  +  LDLS N L  L P+      L     ++++ +    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 617 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGN 675
            +      +                                L L  N+L      Q + +
Sbjct: 61  VANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLVS 88

Query: 676 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESL 706
             R+  LNL  N+L    G        L  + S+
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 658 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---------------------LT 696
           L L+   L   +   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 697 FSNLRHIESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLSGK 740
            +NL  ++ L L  N+L      + LV    L +  +  N+L  +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 655 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKL 713
            +GL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 714 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 767
               P        L+   +++N L   +   T Q  +  +    GNP  C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 382 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 441
           C      L  + +                            +    L    +L  LY+ N
Sbjct: 6   CPHGSSGLRCTRDGAL-------------------------DSLHHLPGAENLTELYIEN 40

Query: 442 NNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 500
                 +    L  L  L+++ + K+ L    P  F     L  L++S N +        
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100

Query: 501 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 555
             LS++++ LS N LH                  +    L       +  +   S
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 3/148 (2%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
              L  + +    +   HL       E    +   L+      +  L  LR L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRL 479
               P +      L  L L+ N L   +         LQ +V+  N L     +    R 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 480 DSLQILDISDNNISGSLPSCFYPLSIKQ 507
           +   +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 48/346 (13%), Positives = 97/346 (28%), Gaps = 47/346 (13%)

Query: 405 FSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462
           FS+  ++L+   +        +   L +  S+K + L+ N +  +  RWL          
Sbjct: 3   FSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN------- 54

Query: 463 MPKNHLEGPIPVEFCRLDSLQILDISDN---NISGSLPSCFYPLSIKQVHLSKNMLHGQL 519
                              L+I + SD     +   +P     L    +   K       
Sbjct: 55  -------------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101

Query: 520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 579
                      +   LS +     +    +GL   +   +A    E  V  +      L+
Sbjct: 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 580 LLDLSDNNL--------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 631
            +    N L             S     T+    N              ++  Q      
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 632 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN------LTRIQTLNLS 685
           + +       + A A   +    L  L L+   L       + +         +QTL L 
Sbjct: 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 686 HNNLTGTIPLT-----FSNLRHIESLDLSYNKLS--GKIPRQLVDL 724
           +N +      T        +  +  L+L+ N+ S    +  ++ ++
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 52/339 (15%), Positives = 106/339 (31%), Gaps = 20/339 (5%)

Query: 82  SLEHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 139
           S+E   ++   I      S   ++     S+K + LSG+T+GT ++R L + +     L+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 140 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 199
                +                L    +   +L  ++  S      + +E  +       
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 200 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 259
           P+    L N+       AK      E+  +        L+S+    N  ++ +  ++   
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 260 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 319
               +      +   G  P             +L+ + LA    L +   +   F  + +
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEG---------IEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 320 NNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNVIFLQFLDLSNNKLTGEIPDH 378
           +     +          L    +S       +   S    I LQ L L  N++  +    
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 379 LAMC----CVNLEFLSLSNNSLK--GHIFSRIFSLRNLR 411
           L         +L FL L+ N       +   I  + + R
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 38/331 (11%), Positives = 92/331 (27%), Gaps = 34/331 (10%)

Query: 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLD 365
           K L+   ++  + +    V +     S+    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 366 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK---GHIFSRIFSLRNLRWLLLEGNHFVG 422
            S+      + D +      L    L    L        +   + +      L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 423 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC----- 477
            +    +      G  +        + +   N   L+ I+  +N LE     E+      
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 478 --------RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 529
                    + +    +  ++ +   L  C     +     +   L          +  +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 530 LVTLDLSYNYLNGSIPDWI------DGLSQLSHLNLAHNNLEGEVPIQLC-----RLNQL 578
           L  L L+   L+      +           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 609
             L+L+ N          +   +  +     
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 30/208 (14%), Positives = 65/208 (31%), Gaps = 5/208 (2%)

Query: 361 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420
              L     KL        +      +     N+ L+        +L  L  + +E  + 
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 480
           +  I     +        L +N     +P         + ++  ++++          + 
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 481 SLQI---LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 537
                  L ++ N I       F    + +++LS N    +L    F   S  V LD+S 
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 538 NYLNGSIPDWIDGLSQLSHLNLAHNNLE 565
             ++      ++ L +L   +    NL+
Sbjct: 211 TRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 8/234 (3%)

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 541 NGSIPDWIDGLSQLSHLNLAH--NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598
              I   +       H       NNL    P     L  LQ L +S+  +  L      +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658
           +      +   + +       S  G         L        +       ++       
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE---LN 182

Query: 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 712
               N L           +    L++S   +         NL+ + +      K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 6/234 (2%)

Query: 137 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 196
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 197 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 256
               +  +   N  K           N       +      L+ L +S+     +     
Sbjct: 65  VLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 257 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 316
           ++   ++      +I +     N  +  + +   L+L  + +        +  +     +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-N 182

Query: 317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370
           +S+NN    +P ++       V  +IS   +         N+  L+     N K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 23/200 (11%), Positives = 47/200 (23%), Gaps = 1/200 (0%)

Query: 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587
            + + L      L         G   L  + ++ N++   +   +            +  
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 647
            + L  +      L        S     K    +       +  +          I    
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 648 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707
              +      L L+ N +              +     +NNL       F        LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 708 LSYNKLSGKIPRQLVDLNTL 727
           +S  ++       L +L  L
Sbjct: 208 ISRTRIHSLPSYGLENLKKL 227

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 33/192 (17%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 585
             +  +   L    +  ++      L Q++ L      ++    ++   LN L  ++ S+
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 586 NNLHGLIP-----------SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 634
           N L  + P              +         N ++       +  I+          L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 694
             E ++  I+       L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 695 LTFSNLRHIESL 706
           L  + L ++ESL
Sbjct: 190 L--AKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 540
           S Q LD+        L +         ++   +M           N   L++L+LS N L
Sbjct: 23  SQQALDLKGLRSDPDLVAQNI---DVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 541 NG--SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597
                +   +     L  LNL+ N L+ E  +   +  +L+ L L  N+L         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	850
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.5e-29  Score=263.85  Aligned_cols=259  Identities=34%  Similarity=0.566  Sum_probs=222.3

Q ss_pred             CCcEEECcCCCCCCC--CcccccCCCCCcEEECCC-CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEE
Q 003084          433 SLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH  509 (850)
Q Consensus       433 ~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  509 (850)
                      +++.|+++++.+.+.  +|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..             
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-------------  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------------  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-------------
Confidence            577788888877763  567788888888888875 6777778888888888888888888776432             


Q ss_pred             ccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCC-CEEeCCCCcC
Q 003084          510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL-QLLDLSDNNL  588 (850)
Q Consensus       510 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l  588 (850)
                                +. .+..++.|+.+++++|.+.+..|..+.+++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       118 ----------~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         118 ----------PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------cc-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                      22 56778889999999999888888999999999999999999998889888888776 8899999999


Q ss_pred             CccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccC
Q 003084          589 HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH  668 (850)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  668 (850)
                      ++..+..+...                                                      ....++++++...+.
T Consensus       187 ~~~~~~~~~~l------------------------------------------------------~~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             ccccccccccc------------------------------------------------------ccccccccccccccc
Confidence            98887766543                                                      355799999999999


Q ss_pred             CCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcccc
Q 003084          669 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF  748 (850)
Q Consensus       669 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  748 (850)
                      +|..+..+++|+.+++++|.+++.+| .++.+++|+.|+|++|++++.+|+.+.++++|++|++++|+++|.+|+ +..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            99999999999999999999997655 688899999999999999999999999999999999999999999998 4788


Q ss_pred             CCCCccccCCCCCCCCCCCCCCC
Q 003084          749 ATFNKSSYDGNPFLCGLPLPICR  771 (850)
Q Consensus       749 ~~~~~~~~~~n~~~c~~~l~~c~  771 (850)
                      ++++.+.+.||+.+||.|++.|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999999999988773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.3e-25  Score=241.87  Aligned_cols=342  Identities=23%  Similarity=0.275  Sum_probs=198.6

Q ss_pred             cCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 003084          284 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF  363 (850)
Q Consensus       284 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  363 (850)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .++.  +..+++|++|++++|.+.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccc
Confidence            344556666666655542  23445566666666666655 3332  333556666666666655322  2555566666


Q ss_pred             EEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCC
Q 003084          364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN  443 (850)
Q Consensus       364 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  443 (850)
                      |+++++.++ .++...  ....+.......+.+......................     ....+...+.........|.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            666665555 222221  1344555555554443322221111111111111111     11112223333333333333


Q ss_pred             CCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccc
Q 003084          444 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT  523 (850)
Q Consensus       444 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  523 (850)
                      ..  ....+..+++++.+++++|.+++..+  +..+++|+.|++++|                       .++. ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-----------------------~l~~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-----------------------QLKD-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-----------------------CCCC-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-----------------------CCCC-cc--h
Confidence            32  12333444455555555554443322  223344444444444                       4432 11  4


Q ss_pred             cCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccc
Q 003084          524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  603 (850)
Q Consensus       524 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  603 (850)
                      +..+++|+.|++++|.+++..  .+..+++|++|++++|++.+..  .+..++.++.+++++|.+++..  .+..     
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~~-----  305 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISN-----  305 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGGG-----
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccch-----
Confidence            667788888888888887654  3778888899999888887543  3677888888988888876532  1221     


Q ss_pred             ccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEE
Q 003084          604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  683 (850)
                                                                      ++.+++|++++|++++..  .+..+++|++|+
T Consensus       306 ------------------------------------------------~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         306 ------------------------------------------------LKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             ------------------------------------------------CTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             ------------------------------------------------hcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                            347889999999998653  378899999999


Q ss_pred             CcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       684 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      +++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999985 33 58889999999999999987654  788999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=2.5e-27  Score=246.90  Aligned_cols=252  Identities=30%  Similarity=0.488  Sum_probs=177.8

Q ss_pred             CCCeeeccCCcCcc--cCCcCCCCCCCCcEEECcC-CCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEE
Q 003084          409 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  485 (850)
Q Consensus       409 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  485 (850)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |.+++.+|..++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45556666665554  3556666666666676664 56666666667777777777777777766666666667777777


Q ss_pred             eccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCC-CEEECcCCcC
Q 003084          486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL-SHLNLAHNNL  564 (850)
Q Consensus       486 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l  564 (850)
                      +++.|.+.+.+                       +. .+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|++
T Consensus       131 ~l~~N~~~~~~-----------------------p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTL-----------------------PP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCC-----------------------CG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccC-----------------------ch-hhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            77766655332                       22 45566667777777777766666666666664 6677777777


Q ss_pred             ccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccch
Q 003084          565 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  644 (850)
Q Consensus       565 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (850)
                      ++..|..+..+.. ..++++++...+.+|..+....                                            
T Consensus       187 ~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~--------------------------------------------  221 (313)
T d1ogqa_         187 TGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             ccccccccccccc-cccccccccccccccccccccc--------------------------------------------
Confidence            7777766666544 3677777777666665554432                                            


Q ss_pred             hcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC
Q 003084          645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL  724 (850)
Q Consensus       645 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  724 (850)
                               .++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|+++++|+.|||++|+++|.+|+ +.++
T Consensus       222 ---------~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         222 ---------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             ---------ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence                     67888888888876544 577888899999999999888888899999999999999999988885 4778


Q ss_pred             CCCCEEEccCCc-CcCC
Q 003084          725 NTLAIFIVAYNN-LSGK  740 (850)
Q Consensus       725 ~~L~~L~l~~N~-l~~~  740 (850)
                      ++|+.+++++|+ ++|.
T Consensus       291 ~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGSCGGGTCSSSEEEST
T ss_pred             CCCCHHHhCCCccccCC
Confidence            888899999997 5554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.6e-24  Score=233.34  Aligned_cols=188  Identities=23%  Similarity=0.344  Sum_probs=150.0

Q ss_pred             CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEE
Q 003084          502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL  581 (850)
Q Consensus       502 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  581 (850)
                      .++++.+++++|.+++..   .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..  .+..+++|++|
T Consensus       196 l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  268 (384)
T d2omza2         196 LTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  268 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             ccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEe
Confidence            445555555555554433   245678999999999999853  46889999999999999998654  37889999999


Q ss_pred             eCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEcc
Q 003084          582 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS  661 (850)
Q Consensus       582 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  661 (850)
                      ++++|++++..+  +..                                                     ++.++.++++
T Consensus       269 ~l~~~~l~~~~~--~~~-----------------------------------------------------~~~l~~l~~~  293 (384)
T d2omza2         269 KLGANQISNISP--LAG-----------------------------------------------------LTALTNLELN  293 (384)
T ss_dssp             ECCSSCCCCCGG--GTT-----------------------------------------------------CTTCSEEECC
T ss_pred             eccCcccCCCCc--ccc-----------------------------------------------------cccccccccc
Confidence            999999876532  222                                                     2378999999


Q ss_pred             CCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084          662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       662 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      .|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ +| .+.++++|++|++++|++++.+
T Consensus       294 ~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         294 ENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             ccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCCh
Confidence            9999853  46889999999999999999764  37889999999999999984 44 6899999999999999999766


Q ss_pred             CCCccccCCCCccccCCC
Q 003084          742 PEWTAQFATFNKSSYDGN  759 (850)
Q Consensus       742 p~~~~~~~~~~~~~~~~n  759 (850)
                      |  +..++.++.+.+++|
T Consensus       368 ~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 P--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G--GTTCTTCSEEECCCE
T ss_pred             h--hccCCCCCEeeCCCC
Confidence            5  467788888887776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2e-24  Score=223.88  Aligned_cols=268  Identities=24%  Similarity=0.327  Sum_probs=173.2

Q ss_pred             CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  439 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  439 (850)
                      ..+.++.+++.++ .+|..+   .+++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|+.|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3566777777777 677654   356777777777777666666777788888888888877766777778888888888


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  519 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  519 (850)
                      ++|+++. +|..+  ...++.|.+.+|.+.+..+..+.....+..++...|.....                      ..
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~  141 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  141 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------------CC
Confidence            8888774 33322  35677777777777766666666677777777766654311                      11


Q ss_pred             CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccC
Q 003084          520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  599 (850)
Q Consensus       520 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  599 (850)
                      ....+..+++|+.+++++|.+... |..  .+++|+.|++++|...+..+..+.+++.++.|++++|.+.+..+..+...
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CccccccccccCccccccCCcccc-Ccc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            122566677777777777777633 322  24677777777777776666667777777777777777666655555443


Q ss_pred             ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084          600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  679 (850)
                      +                                                     +|++|+|++|+++ .+|..|..+++|
T Consensus       219 ~-----------------------------------------------------~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         219 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             c-----------------------------------------------------cceeeeccccccc-ccccccccccCC
Confidence            3                                                     5666666666666 345566666666


Q ss_pred             CEEECcCCcCCccCcccCC------CCCCCCEEECcCCcC
Q 003084          680 QTLNLSHNNLTGTIPLTFS------NLRHIESLDLSYNKL  713 (850)
Q Consensus       680 ~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~Ls~N~l  713 (850)
                      +.|+|++|+|+.+....|.      .+.+|+.|+|++|++
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            6666666666644333332      234455555555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.2e-23  Score=215.88  Aligned_cols=230  Identities=26%  Similarity=0.318  Sum_probs=152.2

Q ss_pred             CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084          360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  439 (850)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  439 (850)
                      .+++|++++|+++ .+|...+.++++|++|++++|.+....+..|.++++|++|++++|++.. +|..+  ...+..|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV  107 (305)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence            4555555555555 4554444445555555555555555555556666666666666666653 33322  246677777


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccc--cCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084          440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  517 (850)
Q Consensus       440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  517 (850)
                      .+|.+.+..+..+.....+..+....|...  ...+..+..+++|+.+++++|.+... +.. .+++++.|++++|...+
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQG-LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSS-CCTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-Ccc-cCCccCEEECCCCcCCC
Confidence            777776655555666667777777666432  23445677788888888888877643 222 24677777777777765


Q ss_pred             ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084          518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  597 (850)
Q Consensus       518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  597 (850)
                      ..+. .|..++.++.|++++|.+++..+.++.++++|++|+|++|+++ .+|.++..+++|++|++++|+|+.+....|.
T Consensus       186 ~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         186 VDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CChh-Hhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc
Confidence            5544 7778888888888888888777778888888888888888887 4566788888888888888888766555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.1e-24  Score=216.42  Aligned_cols=227  Identities=24%  Similarity=0.250  Sum_probs=163.2

Q ss_pred             EECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccc
Q 003084          437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH  516 (850)
Q Consensus       437 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~  516 (850)
                      ++.+++.++ .+|..+.  +++++|+|++|+++...+..|.++++|+.|++++|.+...                     
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i---------------------   71 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI---------------------   71 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE---------------------
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc---------------------
Confidence            444555554 3344332  4566666666666655556666777777777777666532                     


Q ss_pred             cccCccccCCCCCCcEEECc-CCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCC
Q 003084          517 GQLKEGTFFNCSSLVTLDLS-YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC  595 (850)
Q Consensus       517 ~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  595 (850)
                         +...+.+++.++.+... .+.++...+..|+++++|++|++++|.+....+..+...++|+.+++++|.++++++..
T Consensus        72 ---~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          72 ---DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             ---CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---ccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence               22245555666666553 45555556667777777777777777777666666777777888888888877776666


Q ss_pred             cccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccC
Q 003084          596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN  675 (850)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  675 (850)
                      |....                                                     .|++|++++|++++..+..|.+
T Consensus       149 f~~~~-----------------------------------------------------~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         149 FRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTTTT
T ss_pred             hcccc-----------------------------------------------------chhhcccccCcccccchhhhcc
Confidence            65543                                                     6888888888888777788888


Q ss_pred             CCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          676 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       676 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      +++|+.+++++|++++..|..|..+++|+.||+++|++.+..|..|..+++|++|++++|++.|.++.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            88888888888888888888888888888888888888888888888888888888888888876653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=213.43  Aligned_cols=252  Identities=23%  Similarity=0.243  Sum_probs=189.5

Q ss_pred             eeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCC-c
Q 003084          413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-N  491 (850)
Q Consensus       413 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~  491 (850)
                      ++.+++.++ .+|..+.  +++++|+|++|+++...+..|.+++.|++|++++|.+....+..+..+..++.++...+ .
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            444555555 4454443  46788888888887666667888888888888888887777777777778887776543 3


Q ss_pred             CCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchh
Q 003084          492 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ  571 (850)
Q Consensus       492 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  571 (850)
                      +.                        .++...|.++++|++|++++|.+....+..+..+++|+.+++++|.++++.+..
T Consensus        93 ~~------------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          93 LR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             CC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cc------------------------cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence            32                        223336778888888888888887777777888888888888888888777778


Q ss_pred             ccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhh
Q 003084          572 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV  651 (850)
Q Consensus       572 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (850)
                      |..+++|+.|++++|.+.+..+..|...+                                                   
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~---------------------------------------------------  177 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLH---------------------------------------------------  177 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------------------------------------
T ss_pred             hccccchhhcccccCcccccchhhhcccc---------------------------------------------------
Confidence            88888899999999888888777776644                                                   


Q ss_pred             hccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEE
Q 003084          652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI  731 (850)
Q Consensus       652 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  731 (850)
                        +|+++++++|++++..|..|.++++|++|++++|++.+..+..|+.+++|+.|++++|++...-+.. .-...++.+.
T Consensus       178 --~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~  254 (284)
T d1ozna_         178 --SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR  254 (284)
T ss_dssp             --TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred             --ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCc
Confidence              7889999999998888889999999999999999999888888999999999999999887543311 1122344555


Q ss_pred             ccCCcCcCCCCCCc
Q 003084          732 VAYNNLSGKIPEWT  745 (850)
Q Consensus       732 l~~N~l~~~~p~~~  745 (850)
                      ...+.+.|..|..+
T Consensus       255 ~~~~~~~C~~p~~l  268 (284)
T d1ozna_         255 GSSSEVPCSLPQRL  268 (284)
T ss_dssp             SEECCCBEEESGGG
T ss_pred             CCCCceEeCCchHH
Confidence            56677777666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-22  Score=203.55  Aligned_cols=204  Identities=25%  Similarity=0.312  Sum_probs=131.6

Q ss_pred             CCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEE
Q 003084          478 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL  557 (850)
Q Consensus       478 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  557 (850)
                      +...+.+++.+++.++. +|..+ +++++.|+|++|.+++ ++...|.++++|++|+|++|+++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCCC-cCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            44556677888887774 34322 3567777777777753 3333677777777777777777633 2 34566777777


Q ss_pred             ECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhh
Q 003084          558 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  637 (850)
Q Consensus       558 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                      ++++|++.. .+..+.++++|+.|++++|.+.+..+..+....                                     
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-------------------------------------  124 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-------------------------------------  124 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-------------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeecccccccc-------------------------------------
Confidence            777777763 344566677777777777766655544443322                                     


Q ss_pred             hccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC
Q 003084          638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI  717 (850)
Q Consensus       638 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  717 (850)
                                      ++++|++++|.++...+..+..+++|+.|++++|++++..+..|+.+++|+.|||++|+|+ .+
T Consensus       125 ----------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         125 ----------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             ----------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ----------------ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                            5667777777776665666666677777777777777666666666777777777777766 56


Q ss_pred             ChhhhcCCCCCEEEccCCcCcCCC
Q 003084          718 PRQLVDLNTLAIFIVAYNNLSGKI  741 (850)
Q Consensus       718 p~~l~~l~~L~~L~l~~N~l~~~~  741 (850)
                      |+++..+++|+.|++++|++.|.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ChhHCCCCCCCEEEecCCCCCCCc
Confidence            666666666777776666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=196.40  Aligned_cols=112  Identities=27%  Similarity=0.316  Sum_probs=60.6

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      .|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..++.|..+++|++|+++
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            45555555555554445555555555555555555555545555555555555555555555555555555555555555


Q ss_pred             CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +|+|+ .+|.++..+..+..+.++||||.|+|.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            55555 444434444555555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=3e-17  Score=173.35  Aligned_cols=219  Identities=27%  Similarity=0.273  Sum_probs=98.0

Q ss_pred             CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEE
Q 003084          311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  390 (850)
Q Consensus       311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  390 (850)
                      ++++||++++.++ .+|.    ..++|++|++++|+++ .+|..+   .+|+.|++++|.++ .++..    .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l----p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL----PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC----CTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh----cccccccc
Confidence            3445555555554 4442    1345555555555555 334332   34555555555555 34321    13455555


Q ss_pred             ccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 003084          391 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG  470 (850)
Q Consensus       391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  470 (850)
                      +++|.+.. +|. +..+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+++|....
T Consensus       105 L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            55555542 221 34455555555555544422 11   1233444444444332  12233444444555554444332


Q ss_pred             CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084          471 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  550 (850)
Q Consensus       471 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  550 (850)
                      ...    .....+.+..+++.+.                        .++  .+..++.|+.+++++|.... .+   ..
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~------------------------~~~--~~~~l~~L~~l~l~~n~~~~-~~---~~  222 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILE------------------------ELP--ELQNLPFLTTIYADNNLLKT-LP---DL  222 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCS------------------------SCC--CCTTCTTCCEEECCSSCCSS-CC---SC
T ss_pred             ccc----cccccccccccccccc------------------------ccc--cccccccccccccccccccc-cc---cc
Confidence            110    0111223333322221                        111  24456666777777666542 22   23


Q ss_pred             CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084          551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  589 (850)
Q Consensus       551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  589 (850)
                      ..++..+.+.++.+... +   ...+.+...++..+.+.
T Consensus       223 ~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccc-c---ccccccccccccccccc
Confidence            34566666666665522 1   12345556666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.4e-16  Score=168.03  Aligned_cols=303  Identities=25%  Similarity=0.278  Sum_probs=178.8

Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084          336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  415 (850)
Q Consensus       336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  415 (850)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..    ..+|+.|++++|.+... +. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence            6778888888776 45643   456778888888877 67653    45777777777776532 11 1  134677777


Q ss_pred             cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084          416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  495 (850)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  495 (850)
                      ++|.+.. +|. +..+++|+.|+++++.+.... .   ....+..+.+..+...  ....+..++.++.+++++|.... 
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~-  176 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK-  176 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS-
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccccccccc-
Confidence            7776663 342 456667777777766665322 1   2244555555544433  22334455555666665554431 


Q ss_pred             CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084          496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  575 (850)
Q Consensus       496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  575 (850)
                                            . +    ......+.+...++.+. ..+ .+..++.|+.+++++|.... .+   ...
T Consensus       177 ----------------------~-~----~~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~  223 (353)
T d1jl5a_         177 ----------------------L-P----DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLP  223 (353)
T ss_dssp             ----------------------C-C----CCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCC
T ss_pred             ----------------------c-c----ccccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccc
Confidence                                  1 1    11223456677766655 333 36788999999999998763 33   235


Q ss_pred             CCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccC
Q 003084          576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  655 (850)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  655 (850)
                      .++..+.+.++.+..... ............                               ....+..     ......
T Consensus       224 ~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~-------------------------------~~~~~l~-----~l~~~~  266 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDLPE-LPQSLTFLDVSE-------------------------------NIFSGLS-----ELPPNL  266 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCTTCCEEECCS-------------------------------SCCSEES-----CCCTTC
T ss_pred             cccccccccccccccccc-cccccccccccc-------------------------------ccccccc-----cccchh
Confidence            678899999988764322 111111000000                               0000000     001234


Q ss_pred             CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084          656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  735 (850)
Q Consensus       656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  735 (850)
                      ...++..+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|++++|+|+ .+|..   +++|+.|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            5566666666532    234678888888888888 45543   567888888888887 55643   467888889888


Q ss_pred             cCcCCCCC
Q 003084          736 NLSGKIPE  743 (850)
Q Consensus       736 ~l~~~~p~  743 (850)
                      +++ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            887 4555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6e-20  Score=202.24  Aligned_cols=380  Identities=20%  Similarity=0.139  Sum_probs=213.6

Q ss_pred             CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcCCCCcchHHhh----c
Q 003084          311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----C  382 (850)
Q Consensus       311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~  382 (850)
                      +|+.||++++++++..-......++++++|+|++|.++.    .++..+..+++|++|++++|.+++.....+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            567777777777643323444456777888888887762    23445667778888888888765221112222    2


Q ss_pred             CCCCCEEEccCCccCcc----ccccccCCCCCCeeeccCCcCcccCCc----CC-CCCCCCcEEECcCCCCCCCC----c
Q 003084          383 CVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHFVGEIPQ----SL-SKCSSLKGLYLNNNNLSGKI----P  449 (850)
Q Consensus       383 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~l~~n~l~~~~----~  449 (850)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.+......    .+ ...............+....    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34688888888877643    234556677888888888776532111    11 11223344444443332111    0


Q ss_pred             ccccCCCCCcEEECCCCccccCcc----hhc-cCCCCCCEEeccCCcCCCCCCC-----CcCCCcccEEEccCcccccc-
Q 003084          450 RWLGNLKGLQHIVMPKNHLEGPIP----VEF-CRLDSLQILDISDNNISGSLPS-----CFYPLSIKQVHLSKNMLHGQ-  518 (850)
Q Consensus       450 ~~~~~l~~L~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~ls~n~l~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  518 (850)
                      ..+.....++.+.++++.......    ..+ ........+++..+.+......     ......++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            122344567777777665542111    111 1223455666666654321100     01145667777777665321 


Q ss_pred             ---cCccccCCCCCCcEEECcCCcCCCCc----CccccCCCCCCEEECcCCcCccCCchhc-----cCCCCCCEEeCCCC
Q 003084          519 ---LKEGTFFNCSSLVTLDLSYNYLNGSI----PDWIDGLSQLSHLNLAHNNLEGEVPIQL-----CRLNQLQLLDLSDN  586 (850)
Q Consensus       519 ---~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n  586 (850)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.+.......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               11123445667888888887765321    1234456778888888887753322221     23457788888877


Q ss_pred             cCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc
Q 003084          587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV  666 (850)
Q Consensus       587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  666 (850)
                      .++......+...                                                 ....++|++|||++|+++
T Consensus       323 ~l~~~~~~~l~~~-------------------------------------------------~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSV-------------------------------------------------LAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHH-------------------------------------------------HHHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhcccc-------------------------------------------------cccccchhhhheeeeccc
Confidence            6653211111100                                                 011346888888888886


Q ss_pred             cC----CCcccc-CCCCCCEEECcCCcCCcc----CcccCCCCCCCCEEECcCCcCcccCChhh----h-cCCCCCEEEc
Q 003084          667 GH----IPPQIG-NLTRIQTLNLSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQL----V-DLNTLAIFIV  732 (850)
Q Consensus       667 ~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~l  732 (850)
                      +.    +++.+. ..+.|++|+|++|+|+..    +++.+..+++|++|||++|+++......+    . ....|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            43    223332 456788888888888742    34556667888888888888875433333    2 2346888888


Q ss_pred             cCCcCcC
Q 003084          733 AYNNLSG  739 (850)
Q Consensus       733 ~~N~l~~  739 (850)
                      .+|.+..
T Consensus       434 ~~~~~~~  440 (460)
T d1z7xw1         434 YDIYWSE  440 (460)
T ss_dssp             TTCCCCH
T ss_pred             CCCCCCH
Confidence            8887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.1e-17  Score=158.79  Aligned_cols=176  Identities=23%  Similarity=0.257  Sum_probs=122.8

Q ss_pred             cEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc-CCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCC
Q 003084          531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  609 (850)
Q Consensus       531 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~  609 (850)
                      +.++.++++++ .+|..+  .+++++|+|++|+|++ ..+..|.++++|+.|++++|.+.+.++..|....         
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~---------   78 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc---------
Confidence            46777777777 344433  2567788888888865 3355677788888888888888777777666544         


Q ss_pred             CCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcC
Q 003084          610 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL  689 (850)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  689 (850)
                                                                  .|++|+|++|++++..|..|.++++|++|+|++|+|
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCccc
Confidence                                                        688888888888877777788888888888888888


Q ss_pred             CccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084          690 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  766 (850)
Q Consensus       690 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  766 (850)
                      +++.|..|..+++|++|+|++|++....+.. .-...++.+.+..|.+.+..|..   +......++..|.+.|.++
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             cccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            8777788888888888888888876433221 11223555667777777766653   3334455677777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=165.27  Aligned_cols=220  Identities=17%  Similarity=0.139  Sum_probs=125.9

Q ss_pred             cEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcc
Q 003084          435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM  514 (850)
Q Consensus       435 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  514 (850)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+..                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~--------------------   67 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------   67 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc--------------------
Confidence            34555555554 3333332  345566666666554444455666666666666665542                    


Q ss_pred             cccccCccccCCCCCCcEEECcC-CcCCCCcCccccCCCCCCEEECcCCcCccCCch-hccCCCCCCEEeCCCCcCCccC
Q 003084          515 LHGQLKEGTFFNCSSLVTLDLSY-NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLI  592 (850)
Q Consensus       515 ~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~  592 (850)
                         .++...|.+++.++++.+.. |.+....+..|.++++|+.+++++|.+....+. .+..++.+..+..+++.+....
T Consensus        68 ---~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          68 ---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ---EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ---eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence               23333556666666666543 455555556666677777777777666533221 2223444555555565665555


Q ss_pred             CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcc
Q 003084          593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ  672 (850)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  672 (850)
                      +..|....                                                    ..++.|++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            44443322                                                    14667777777777554444


Q ss_pred             ccCCCCCCE-EECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          673 IGNLTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       673 ~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      |. .++++. +++++|+++.+.+..|.++++|++|++++|+++...+..|.+++.|+++++.
T Consensus       173 ~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            43 344443 3566777776555667778888888888888875555567777666665553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6e-17  Score=158.59  Aligned_cols=74  Identities=19%  Similarity=0.321  Sum_probs=45.3

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  733 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  733 (850)
                      +|++|++++|.+.+.  ..++++++|+.|+|++|++++. + .++.+++|+.|++++|++++..  .+.++++|++|+++
T Consensus       152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            456666666665532  2366666777777777766643 2 2566677777777777766432  25667777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.6e-17  Score=158.29  Aligned_cols=188  Identities=21%  Similarity=0.305  Sum_probs=105.0

Q ss_pred             CCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEE
Q 003084          430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH  509 (850)
Q Consensus       430 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  509 (850)
                      .+.+|+.|++.+|.+++.  ..+..+++|++|++++|.+.+..+  +..+++++.+++++|.++..              
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--------------  100 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------------  100 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------------
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--------------
Confidence            344555555555555432  234555555555555555543322  45555555665555554311              


Q ss_pred             ccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084          510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  589 (850)
Q Consensus       510 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  589 (850)
                                +  .+..+++|+.++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|+.|++++|.+.
T Consensus       101 ----------~--~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2         101 ----------S--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             ----------G--GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             ----------c--ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence                      0  244455555555555555432  2244555666666666555432  23455566666666666554


Q ss_pred             ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC
Q 003084          590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  669 (850)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  669 (850)
                      +..+  +..                                                     +++|++||+++|++++. 
T Consensus       165 ~~~~--l~~-----------------------------------------------------l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         165 DLTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             CCGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCC-
T ss_pred             cchh--hcc-----------------------------------------------------cccceecccCCCccCCC-
Confidence            3211  221                                                     23677777777777643 


Q ss_pred             CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcC
Q 003084          670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY  710 (850)
Q Consensus       670 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  710 (850)
                      + .++++++|++|+|++|++++..  .++++++|+.|++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            3 3777788888888888887543  377788888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.4e-17  Score=161.00  Aligned_cols=219  Identities=16%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             cEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEcc
Q 003084          313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  392 (850)
Q Consensus       313 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  392 (850)
                      +.++.++..++ .+|..++   +++++|++++|.++...+.+|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 5665442   3566666666666644444566666666666666666544555455555555555544


Q ss_pred             C-CccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC
Q 003084          393 N-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  471 (850)
Q Consensus       393 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  471 (850)
                      . |.+....+..|.++++|+++++++|.+....+.  .                     .+..++.+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~---------------------~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV--H---------------------KIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC--T---------------------TTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhcccccc--c---------------------ccccccccccccccccccccc
Confidence            3 344444444455555555555555554422111  1                     112223333333334444433


Q ss_pred             cchhccCCC-CCCEEeccCCcCCCCCCCCcCCCcccEEE-ccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcccc
Q 003084          472 IPVEFCRLD-SLQILDISDNNISGSLPSCFYPLSIKQVH-LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID  549 (850)
Q Consensus       472 ~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  549 (850)
                      .+..|.+++ .++.|++++|+++...+..+...+++++. +.+|.++ .++...|.++++|++|++++|+++...+..|.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            334444332 45556666666554333333333333332 2333332 34443566666666666666666654444455


Q ss_pred             CCCCCCEEEC
Q 003084          550 GLSQLSHLNL  559 (850)
Q Consensus       550 ~l~~L~~L~L  559 (850)
                      ++++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            5555554444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.7e-19  Score=194.95  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=17.1

Q ss_pred             CCCcEEECcCCCCCCC----CcccccCCCCCcEEECCCCccc
Q 003084          432 SSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLE  469 (850)
Q Consensus       432 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  469 (850)
                      +.|++|++++|.+++.    +...+..+++|++|++++|+++
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3455555555554421    1122333445555555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=4.5e-17  Score=154.45  Aligned_cols=159  Identities=20%  Similarity=0.233  Sum_probs=115.4

Q ss_pred             CCCcEEECcCCcCCC-CcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084          528 SSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  606 (850)
Q Consensus       528 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  606 (850)
                      +++++|+|++|+|++ ..+..|.++++|+.|++++|.+.+..+..+..+++|++|++++|+++.+.+..|.++.      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC------
Confidence            567778888887765 3456677788888888888888777777777788888888888888877777776644      


Q ss_pred             CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084          607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  686 (850)
                                                                     +|++|+|++|+|+++.|+.|..+++|++|+|++
T Consensus       103 -----------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         103 -----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------------------------------cccccccCCccccccCHHHhcCCcccccccccc
Confidence                                                           788888888888877777888888888888888


Q ss_pred             CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084          687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  743 (850)
Q Consensus       687 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  743 (850)
                      |.+....+..+ -...++.+.+..|.++...|..   +..++.++++.|.+.|..+.
T Consensus       136 N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         136 NPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             cccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCCC
Confidence            88874322111 1233556677778887777754   45566778999999876654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.8e-16  Score=150.24  Aligned_cols=180  Identities=24%  Similarity=0.384  Sum_probs=129.7

Q ss_pred             eCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEeccc
Q 003084           11 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF   90 (850)
Q Consensus        11 ~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~   90 (850)
                      ++..+.+++.+  .  ...+.+|++|++++|.+...  .++.. +++|++|++++|++++. +  .++++++|++|++  
T Consensus        30 ~l~~~~~~~~~--~--~~~L~~L~~L~l~~~~i~~l--~~l~~-l~~L~~L~L~~n~i~~l-~--~~~~l~~L~~L~l--   97 (210)
T d1h6ta2          30 NLKKKSVTDAV--T--QNELNSIDQIIANNSDIKSV--QGIQY-LPNVTKLFLNGNKLTDI-K--PLANLKNLGWLFL--   97 (210)
T ss_dssp             HTTCSCTTSEE--C--HHHHHTCCEEECTTSCCCCC--TTGGG-CTTCCEEECCSSCCCCC-G--GGTTCTTCCEEEC--
T ss_pred             HhCcCccCCcc--C--HHHhcCccEEECcCCCCCCc--hhHhh-CCCCCEEeCCCccccCc-c--ccccCcccccccc--
Confidence            44555555543  2  23467788888888887654  45777 88888888888888753 3  3677888888888  


Q ss_pred             CCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCC
Q 003084           91 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN  170 (850)
Q Consensus        91 ~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  170 (850)
                      ++|++.+. + .+.. +++|+.|++++|.+..    ++  .+..+++++.+++++|.+..  +..+..+++|+++++++|
T Consensus        98 ~~n~i~~l-~-~l~~-l~~L~~L~l~~~~~~~----~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2          98 DENKVKDL-S-SLKD-LKKLKSLSLEHNGISD----IN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             CSSCCCCG-G-GGTT-CTTCCEEECTTSCCCC----CG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSS
T ss_pred             cccccccc-c-cccc-cccccccccccccccc----cc--cccccccccccccccccccc--cccccccccccccccccc
Confidence            67776642 2 3555 8888888888887754    32  57778888888888888764  335677888888888888


Q ss_pred             cCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccC
Q 003084          171 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN  219 (850)
Q Consensus       171 ~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~  219 (850)
                      .++ .++.  +.++++|++|++++|.++. .  ..+.++++|+.|++++
T Consensus       167 ~l~-~i~~--l~~l~~L~~L~Ls~N~i~~-l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         167 QIS-DIVP--LAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC-CCGG--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEEE
T ss_pred             ccc-cccc--ccCCCCCCEEECCCCCCCC-C--hhhcCCCCCCEEEccC
Confidence            887 5554  7888888888888888763 2  3477888888888754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.3e-16  Score=146.54  Aligned_cols=177  Identities=21%  Similarity=0.291  Sum_probs=135.4

Q ss_pred             EeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecc
Q 003084           10 LHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR   89 (850)
Q Consensus        10 L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~   89 (850)
                      +.++.+.+++..    ....++++++|++++|++...  +++.. +++|++|++++|.+++..   .++++++|++|++ 
T Consensus        23 ~~l~~~~~~~~~----~~~~l~~l~~L~l~~~~i~~l--~~l~~-l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l-   91 (199)
T d2omxa2          23 TVLGKTNVTDTV----SQTDLDQVTTLQADRLGIKSI--DGVEY-LNNLTQINFSNNQLTDIT---PLKNLTKLVDILM-   91 (199)
T ss_dssp             HHTTCSSTTSEE----CHHHHTTCCEEECTTSCCCCC--TTGGG-CTTCCEEECCSSCCCCCG---GGTTCTTCCEEEC-
T ss_pred             HHhCCCCCCCcc----CHHHhcCCCEEECCCCCCCCc--ccccc-CCCcCcCccccccccCcc---cccCCcccccccc-
Confidence            355666666643    235678899999999988754  56777 899999999999887543   3888999999999 


Q ss_pred             cCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCC
Q 003084           90 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF  169 (850)
Q Consensus        90 ~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  169 (850)
                       +.|.+....  .+.. +++|+.|+++++.+..    +  ..+..+++|+.|++++|++...  ..+..+++|+.|++++
T Consensus        92 -~~n~~~~~~--~l~~-l~~L~~L~l~~~~~~~----~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2          92 -NNNQIADIT--PLAN-LTNLTGLTLFNNQITD----I--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSS  159 (199)
T ss_dssp             -CSSCCCCCG--GGTT-CTTCSEEECCSSCCCC----C--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCS
T ss_pred             -ccccccccc--cccc-cccccccccccccccc----c--cccchhhhhHHhhhhhhhhccc--cccccccccccccccc
Confidence             777655432  3555 8899999999888765    2  2577889999999999988643  3588899999999999


Q ss_pred             CcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEE
Q 003084          170 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  215 (850)
Q Consensus       170 n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  215 (850)
                      |.++ .++.  ++++++|++|++++|+++.   .+.++++++|+.|
T Consensus       160 n~l~-~l~~--l~~l~~L~~L~ls~N~i~~---i~~l~~L~~L~~L  199 (199)
T d2omxa2         160 NQVT-DLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL  199 (199)
T ss_dssp             SCCC-CCGG--GTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEE
T ss_pred             cccc-CCcc--ccCCCCCCEEECCCCCCCC---CccccCCCCCCcC
Confidence            9987 5654  8899999999999998874   2346778888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=146.64  Aligned_cols=146  Identities=25%  Similarity=0.338  Sum_probs=112.7

Q ss_pred             cCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccc
Q 003084          524 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  603 (850)
Q Consensus       524 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  603 (850)
                      +..+++|++|++++|++++..  .++.+++|+.|++++|++++ ++ .+..+++|+.|++++|.+....  .+..     
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~~--~l~~-----  132 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN--GLVH-----  132 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG--GGGG-----
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccccc--cccc-----
Confidence            566788888888888888653  36788889999998888874 33 5778888999999888765321  1222     


Q ss_pred             ccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEE
Q 003084          604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  683 (850)
                                                                      ++.++.+++++|.+++  +..+..+++|+.++
T Consensus       133 ------------------------------------------------l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         133 ------------------------------------------------LPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             ------------------------------------------------cccccccccccccccc--cccccccccccccc
Confidence                                                            3478889999998874  34577889999999


Q ss_pred             CcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccC
Q 003084          684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY  734 (850)
Q Consensus       684 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  734 (850)
                      +++|++++..  .++++++|+.|++++|+++. +| .+.++++|++|++++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999998543  37889999999999999884 44 588899999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.6e-15  Score=142.98  Aligned_cols=148  Identities=23%  Similarity=0.338  Sum_probs=72.3

Q ss_pred             CCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCC
Q 003084           55 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP  134 (850)
Q Consensus        55 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~  134 (850)
                      ++++++|++++|.+.. +.  .++.+++|++|++  ++|++++..+  +.+ +++|++|++++|.+..    ++  .+.+
T Consensus        39 l~~l~~L~l~~~~i~~-l~--~l~~l~nL~~L~L--s~N~l~~~~~--l~~-l~~L~~L~l~~n~~~~----~~--~l~~  104 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-ID--GVEYLNNLTQINF--SNNQLTDITP--LKN-LTKLVDILMNNNQIAD----IT--PLAN  104 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CT--TGGGCTTCCEEEC--CSSCCCCCGG--GTT-CTTCCEEECCSSCCCC----CG--GGTT
T ss_pred             hcCCCEEECCCCCCCC-cc--ccccCCCcCcCcc--ccccccCccc--ccC-Cccccccccccccccc----cc--cccc
Confidence            4455555555555542 11  3445555555555  4444443322  333 5555555555555433    22  2445


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccE
Q 003084          135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI  214 (850)
Q Consensus       135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  214 (850)
                      +++|+.|+++++.+...  ..+..+++|+.|++++|.+. .++  .+..+++|++|++++|.++..   ..+.++++|+.
T Consensus       105 l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l---~~l~~l~~L~~  176 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDL---KPLANLTTLER  176 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCCE
T ss_pred             ccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCC---ccccCCCCCCE
Confidence            55555555555554432  22445555555555555554 332  245555555555555555421   22445555555


Q ss_pred             EEccCCcccc
Q 003084          215 FDAKNNEING  224 (850)
Q Consensus       215 L~l~~n~~~~  224 (850)
                      |++++|+++.
T Consensus       177 L~ls~N~i~~  186 (199)
T d2omxa2         177 LDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCCCCC
Confidence            5555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.5e-15  Score=149.99  Aligned_cols=201  Identities=16%  Similarity=0.178  Sum_probs=100.3

Q ss_pred             CEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEe
Q 003084            8 NTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD   87 (850)
Q Consensus         8 ~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~   87 (850)
                      +.||++++.+....  ...+.. .....+.++...+... ...... ..+|++|++++|.+........+.++++|++|+
T Consensus         3 ~~lDLs~~~l~~~~--l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~-~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDV--TGRLLS-QGVIAFRCPRSFMDQP-LAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHH--HHHHHH-TTCSEEECTTCEECSC-CCSCCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCchH--HHHHHh-ccceEeeccccccccc-hhhhcc-CCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            46777776654322  111111 2344555555443322 112223 456777777776665433222456667777777


Q ss_pred             cccCCcccccchhhHhhhcCCCCcEEEccCC-CCCCCCCccCCcCCCCCCCCCEEEccCCc-cccc-cCccc-cCCCCCC
Q 003084           88 MRFARIALNTSFLQIIGESMPSLKYLSLSGS-TLGTNSSRILDQGLCPLAHLQELYIDNND-LRGS-LPWCL-ANTTSLR  163 (850)
Q Consensus        88 L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n-~i~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~  163 (850)
                      +  .++.+++..+..++. +++|++|++++| .++.   ......+..+++|++|++++|. ++.. ....+ ..+++|+
T Consensus        78 L--~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd---~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~  151 (284)
T d2astb2          78 L--EGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSE---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  151 (284)
T ss_dssp             C--TTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCH---HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             c--cccCCCcHHHHHHhc-CCCCcCccccccccccc---cccchhhHHHHhccccccccccccccccchhhhcccccccc
Confidence            7  666666666666666 677777777765 3332   1011112346667777776653 3221 11122 2245677


Q ss_pred             EEECCCCc--CcCC-CCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCC
Q 003084          164 ILDVSFNQ--LTGS-ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN  220 (850)
Q Consensus       164 ~L~Ls~n~--i~~~-i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n  220 (850)
                      .|+++++.  +++. +.. .+.++++|++|++++|..........+.++++|++|++++|
T Consensus       152 ~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             EEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             hhhhcccccccccccccc-cccccccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            77766542  2211 111 23456667777776654322223334455555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=145.68  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=29.5

Q ss_pred             CCCCCEEEccCCccccc-cCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCC
Q 003084          135 LAHLQELYIDNNDLRGS-LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN  195 (850)
Q Consensus       135 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n  195 (850)
                      ..+|++||++++.+... +...+.++++|++|+++++.+++..+. .+..+++|++|+++++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCcccccc
Confidence            34555555555554432 223345555555555555555433333 4455555555555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.3e-14  Score=127.96  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=42.9

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCc-ccCCCCCCCCEEECcCCcCcccCC----hhhhcCCCCC
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIP----RQLVDLNTLA  728 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~  728 (850)
                      +|++|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|+.|++++|+++. .|    ..+..+++|+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcC
Confidence            45555555555554444444556666666666666653321 345566666666666666653 23    2455666666


Q ss_pred             EEE
Q 003084          729 IFI  731 (850)
Q Consensus       729 ~L~  731 (850)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6e-14  Score=127.59  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  602 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  602 (850)
                      .|.++..+++|+|++|+|+.+ +..+..+++|+.|++++|+++..  +.+..+++|++|++++|++++..+..+..    
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~----   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH----
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccc----
Confidence            466788899999999999854 66677889999999999999854  35788999999999999998776654443    


Q ss_pred             cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC-ccccCCCCCCE
Q 003084          603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQT  681 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~  681 (850)
                                                                       +++|++|++++|+++.... ..+..+++|++
T Consensus        86 -------------------------------------------------l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          86 -------------------------------------------------LPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             -------------------------------------------------CTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             -------------------------------------------------ccccccceeccccccccccccccccccccch
Confidence                                                             3489999999999975422 46888999999


Q ss_pred             EECcCCcCCccC---cccCCCCCCCCEEEC
Q 003084          682 LNLSHNNLTGTI---PLTFSNLRHIESLDL  708 (850)
Q Consensus       682 L~Ls~N~l~~~~---~~~~~~l~~L~~L~L  708 (850)
                      |++++|.++...   +..+..+++|+.||-
T Consensus       117 L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             hhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999997443   235778899999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.2e-13  Score=113.40  Aligned_cols=85  Identities=31%  Similarity=0.424  Sum_probs=72.7

Q ss_pred             hccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC-ChhhhcCCCCCEE
Q 003084          652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIF  730 (850)
Q Consensus       652 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  730 (850)
                      ++.|++||+++|+++ .+|..|+.+++|+.|++++|.|++. | .++.+++|+.|++++|+++... +..+..+++|+.+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            348999999999998 5677899999999999999999854 4 5889999999999999998543 2578899999999


Q ss_pred             EccCCcCcC
Q 003084          731 IVAYNNLSG  739 (850)
Q Consensus       731 ~l~~N~l~~  739 (850)
                      ++++|+++.
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.2e-13  Score=119.05  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             cCCeEEccCCccccCCCccccCCCCCCEEECcCC-cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084          654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  732 (850)
                      ..+.++.+++.++ ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+.+.|.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567899999888 56888999999999999876 488888889999999999999999999888999999999999999


Q ss_pred             cCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084          733 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  768 (850)
Q Consensus       733 ~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  768 (850)
                      ++|+|+...+..+. ...+..+.+++||+.|+|.+.
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGGH
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcccCCchHH
Confidence            99999965555543 346888899999999999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=7.9e-14  Score=145.66  Aligned_cols=246  Identities=16%  Similarity=0.140  Sum_probs=146.9

Q ss_pred             cCCCCCCCCcEEECcCCCCCCCC----cccccCCCCCcEEECCCCccccC----------cchhccCCCCCCEEeccCCc
Q 003084          426 QSLSKCSSLKGLYLNNNNLSGKI----PRWLGNLKGLQHIVMPKNHLEGP----------IPVEFCRLDSLQILDISDNN  491 (850)
Q Consensus       426 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~ls~n~  491 (850)
                      ..+....+++.|++++|.+....    ...+...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34556678888888888775432    22455667788888876644321          12234566777777777776


Q ss_pred             CCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-------------ccccCCCCCCEEE
Q 003084          492 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-------------DWIDGLSQLSHLN  558 (850)
Q Consensus       492 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~  558 (850)
                      +......                   .+.. .+..+++|+.|++++|.+.....             ......+.|+.++
T Consensus       105 i~~~~~~-------------------~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1         105 FGPTAQE-------------------PLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  164 (344)
T ss_dssp             CCTTTHH-------------------HHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             ccccccc-------------------chhh-hhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence            6532110                   0111 23345667777777666532110             0113456777888


Q ss_pred             CcCCcCccCC----chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhh
Q 003084          559 LAHNNLEGEV----PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE  634 (850)
Q Consensus       559 L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (850)
                      +++|.+....    ...+..++.|+.|++++|.++......+-                                     
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l-------------------------------------  207 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL-------------------------------------  207 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH-------------------------------------
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccch-------------------------------------
Confidence            8877765332    23345577888888888876531000000                                     


Q ss_pred             hhhhccccchhcchhhhhccCCeEEccCCccccC----CCccccCCCCCCEEECcCCcCCccCcc----cCC--CCCCCC
Q 003084          635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH----IPPQIGNLTRIQTLNLSHNNLTGTIPL----TFS--NLRHIE  704 (850)
Q Consensus       635 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~--~l~~L~  704 (850)
                                 .......++|+.|+|++|.++..    +...+..+++|++|+|++|.|++....    .+.  ..+.|+
T Consensus       208 -----------~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         208 -----------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             -----------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             -----------hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC
Confidence                       00001134788888888887533    334567788899999999988754222    222  246799


Q ss_pred             EEECcCCcCccc----CChhhh-cCCCCCEEEccCCcCcC
Q 003084          705 SLDLSYNKLSGK----IPRQLV-DLNTLAIFIVAYNNLSG  739 (850)
Q Consensus       705 ~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~l~~N~l~~  739 (850)
                      .||+++|+|+..    +...+. +.+.|+.|++++|.+..
T Consensus       277 ~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            999999998753    233443 57889999999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=5.1e-14  Score=147.11  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             cccCCCCCCCEEEcCCCCCcccchhhh----hccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchh
Q 003084           25 QELHNFTNLEYLTLDDSSLHISLLQSI----GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL  100 (850)
Q Consensus        25 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l----~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  100 (850)
                      ..+...+.|+.|+|++|.+.......+    .. .++|+.|+++++........                 .......+.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~l~l~~~~~~~~~~~-----------------~~~~~~~l~   86 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDE-----------------IPEALRLLL   86 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGG-----------------SHHHHHHHH
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHh-CCCCCEEECCCCcccccccc-----------------cchHHHHHH
Confidence            445556666667776666654433332    23 45555555555433211000                 000001122


Q ss_pred             hHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCcc-------------ccCCCCCCEEEC
Q 003084          101 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC-------------LANTTSLRILDV  167 (850)
Q Consensus       101 ~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L  167 (850)
                      ..+.. +++|+.|++++|.++..+.......+...++|++|++++|.+.......             ....+.|+.+++
T Consensus        87 ~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l  165 (344)
T d2ca6a1          87 QALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  165 (344)
T ss_dssp             HHHTT-CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHhh-CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence            23333 5566666666665544222111223334556666666666543211111             123455666666


Q ss_pred             CCCcCcCC----CCcccccCCCCCCeEECcCCcCc
Q 003084          168 SFNQLTGS----ISSSPLVHLTSIEELRLSNNHFR  198 (850)
Q Consensus       168 s~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~  198 (850)
                      ++|.+...    +.. .+...+.|++|++++|.+.
T Consensus       166 ~~n~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         166 GRNRLENGSMKEWAK-TFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CSSCCTGGGHHHHHH-HHHHCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccc-hhhhhhhhccccccccccc
Confidence            65554311    111 2334455566666555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2e-12  Score=111.26  Aligned_cols=105  Identities=28%  Similarity=0.440  Sum_probs=80.7

Q ss_pred             cEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeE
Q 003084          111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL  190 (850)
Q Consensus       111 ~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L  190 (850)
                      |+|++++|+++.    ++  .+..+++|++|++++|+++ .+|..|..+++|+.|++++|.++ .+|.  +..+++|++|
T Consensus         1 R~L~Ls~n~l~~----l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV----LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS----CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCCCC----Cc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeE
Confidence            578888888865    43  4777888888888888887 45667888888888888888887 6654  7888888888


Q ss_pred             ECcCCcCcCCCCcccccCCCCccEEEccCCccccc
Q 003084          191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE  225 (850)
Q Consensus       191 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  225 (850)
                      ++++|.+........+..+++|+.+++++|++...
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            88888887544455677888888888888877643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.4e-13  Score=128.29  Aligned_cols=144  Identities=22%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             CCcEEECcCC--cCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084          529 SLVTLDLSYN--YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  606 (850)
Q Consensus       529 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  606 (850)
                      ..+.+++++.  .+. ..+..+..+++|++|+|++|+|+.. + .+.++++|+.|++++|.++.+. ..+.         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~-~~~~---------   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE-NLDA---------   90 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCS-SHHH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccccc-cccc---------
Confidence            3445555543  233 3456678888888888888888743 3 4778888888888888876432 1111         


Q ss_pred             CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084          607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  686 (850)
                                                                  .++.|++|++++|+++..  +.+..+++|+.|++++
T Consensus        91 --------------------------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          91 --------------------------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             --------------------------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESE
T ss_pred             --------------------------------------------cccccccccccccccccc--cccccccccccccccc
Confidence                                                        134688999999988853  3578888999999999


Q ss_pred             CcCCccCc-ccCCCCCCCCEEECcCCcCcccCChh----------hhcCCCCCEEE
Q 003084          687 NNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFI  731 (850)
Q Consensus       687 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  731 (850)
                      |+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99885432 46788899999999999887554432          56788888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-11  Score=108.96  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=67.9

Q ss_pred             cCCeEEccCC-ccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084          654 LLAGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  732 (850)
Q Consensus       654 ~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  732 (850)
                      +|++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|++|+++...+..+.. ..|+.|++
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccccc
Confidence            6777777655 476666677888888888888888888887888888889999999999988555555544 46889999


Q ss_pred             cCCcCcCCC
Q 003084          733 AYNNLSGKI  741 (850)
Q Consensus       733 ~~N~l~~~~  741 (850)
                      ++|++.|.+
T Consensus       111 ~~Np~~C~C  119 (156)
T d2ifga3         111 SGNPLHCSC  119 (156)
T ss_dssp             CSSCCCCCG
T ss_pred             CCCcccCCc
Confidence            999987654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=6.4e-13  Score=125.30  Aligned_cols=132  Identities=22%  Similarity=0.218  Sum_probs=102.4

Q ss_pred             ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084          523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  602 (850)
Q Consensus       523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  602 (850)
                      .+..+++|++|+|++|+|+.+ + .+.++++|+.|++++|.++ .++.....+++|+.|++++|+++...  .+      
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~--~~------  111 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS--GI------  111 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHH--HH------
T ss_pred             HHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccccc--cc------
Confidence            577889999999999999854 3 5889999999999999998 44555555678999999999987531  11      


Q ss_pred             cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC-ccccCCCCCCE
Q 003084          603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQT  681 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~  681 (850)
                                                                     ..+++|+.|++++|+++.... ..+..+++|+.
T Consensus       112 -----------------------------------------------~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_         112 -----------------------------------------------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             -----------------------------------------------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             -----------------------------------------------cccccccccccccchhccccccccccCCCccce
Confidence                                                           125589999999999985422 46889999999


Q ss_pred             EECcCCcCCccCccc----------CCCCCCCCEEECcCCcCc
Q 003084          682 LNLSHNNLTGTIPLT----------FSNLRHIESLDLSYNKLS  714 (850)
Q Consensus       682 L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~  714 (850)
                      |+|++|.+....+..          +..+++|+.||  +..++
T Consensus       145 L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             eecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999987544332          56789999987  44554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.7e-08  Score=87.37  Aligned_cols=78  Identities=26%  Similarity=0.175  Sum_probs=44.0

Q ss_pred             cCCeEEccCCccccCC--CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCCh-------hhhcC
Q 003084          654 LLAGLDLSCNKLVGHI--PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR-------QLVDL  724 (850)
Q Consensus       654 ~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l  724 (850)
                      .|++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++.....+       .+..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            4555555555555332  23355566677777777776644332333344567777777777654332       24556


Q ss_pred             CCCCEEE
Q 003084          725 NTLAIFI  731 (850)
Q Consensus       725 ~~L~~L~  731 (850)
                      |+|+.||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            7777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.5e-07  Score=81.32  Aligned_cols=74  Identities=22%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             CCccccCCCCCCEEECcCCcCCccC--cccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084          669 IPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  742 (850)
Q Consensus       669 ~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  742 (850)
                      ++..+..+++|++|+|++|+|+...  +..+..+++|+.||+++|.|+...+-.+.....|+.+++++|++++...
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3444567899999999999999653  3557789999999999999996655455566789999999999987655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.84  E-value=4.8e-06  Score=74.80  Aligned_cols=41  Identities=22%  Similarity=0.207  Sum_probs=18.5

Q ss_pred             CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc
Q 003084          107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND  147 (850)
Q Consensus       107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~  147 (850)
                      .+.|++|++++|.++..+......++...+.|++|++++|+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            44455555555555432222222234444555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=2e-05  Score=70.54  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             CCCCCEEeCCCC-cCCccc--cCccccCCCCCCCEEEcCCCCCcccchh----hhhccCCCCcEEeCCCCcCCCcccC--
Q 003084            4 FPSLNTLHLESN-NFTATL--TTTQELHNFTNLEYLTLDDSSLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG--   74 (850)
Q Consensus         4 l~~L~~L~Ls~~-~~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~--   74 (850)
                      -++|++|+|+++ .+++..  .....+...++|++|+|++|.+.+....    .+.. .+.|++|+|++|.+......  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhh-cccccceeeehhhcchHHHHHH
Confidence            456666666653 344321  0023455566666666666666543322    2333 55566666666655432110  


Q ss_pred             -CcCCCCCcccEEec
Q 003084           75 -QGFPHFKSLEHLDM   88 (850)
Q Consensus        75 -~~~~~l~~L~~L~L   88 (850)
                       .++...+.|++|++
T Consensus        93 ~~aL~~n~sL~~L~l  107 (167)
T d1pgva_          93 LRSTLVTQSIVEFKA  107 (167)
T ss_dssp             HHHTTTTCCCSEEEC
T ss_pred             HHHHHhCCcCCEEEC
Confidence             12444455555555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.60  E-value=3.2e-05  Score=69.25  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CCCCCCEEeCCC-CcCCccc--cCccccCCCCCCCEEEcCCCCCcccchh----hhhccCCCCcEEeCCCCcCCCcccC-
Q 003084            3 SFPSLNTLHLES-NNFTATL--TTTQELHNFTNLEYLTLDDSSLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG-   74 (850)
Q Consensus         3 ~l~~L~~L~Ls~-~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~-   74 (850)
                      +-+.|++|+|++ +.+++..  ....++...++|++|++++|.++.....    .+.. .+.++.+++++|.+...... 
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccchhHHH
Confidence            346777777776 3454331  0134455667777777777766654333    2334 56677777766665432110 


Q ss_pred             --CcCCCCCcccEEecccCCcccccchhhH----hhhcCCCCcEEEccCC
Q 003084           75 --QGFPHFKSLEHLDMRFARIALNTSFLQI----IGESMPSLKYLSLSGS  118 (850)
Q Consensus        75 --~~~~~l~~L~~L~L~~~~~~~~~~~~~~----l~~~l~~L~~L~ls~n  118 (850)
                        +++...+.|+.++|..+.+.+.+.....    +.. .+.|+.|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~-n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHh-CCCcCEEeCcCC
Confidence              1345556666555533444444433222    223 455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.30  E-value=4e-05  Score=68.57  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             CCCCCCCEEEcCC-CCCcccchhhh----hccCCCCcEEeCCCCcC
Q 003084           28 HNFTNLEYLTLDD-SSLHISLLQSI----GSIFPSLKNLSMSGCEV   68 (850)
Q Consensus        28 ~~l~~L~~L~Ls~-n~i~~~~~~~l----~~~~~~L~~L~Ls~~~~   68 (850)
                      .+.++|++|++++ +.++......+    .. .+.|++|++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~-n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRS   58 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc-CCccCeeeccCCcc
Confidence            4456666666665 34544433322    22 34444444444443