Citrus Sinensis ID: 003120
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H1U5 | 865 | Anaphase-promoting comple | yes | no | 0.950 | 0.929 | 0.667 | 0.0 | |
| Q9UJX6 | 822 | Anaphase-promoting comple | yes | no | 0.622 | 0.641 | 0.356 | 9e-93 | |
| Q8BZQ7 | 837 | Anaphase-promoting comple | yes | no | 0.841 | 0.850 | 0.313 | 2e-92 | |
| Q551S9 | 907 | Anaphase-promoting comple | yes | no | 0.465 | 0.434 | 0.347 | 1e-68 | |
| Q874R3 | 681 | Anaphase-promoting comple | yes | no | 0.431 | 0.535 | 0.318 | 4e-49 | |
| P34514 | 731 | Anaphase-promoting comple | yes | no | 0.436 | 0.504 | 0.282 | 1e-41 | |
| Q12440 | 853 | Anaphase-promoting comple | yes | no | 0.464 | 0.460 | 0.228 | 4e-20 | |
| Q09760 | 785 | Cullin-3 OS=Schizosacchar | no | no | 0.187 | 0.202 | 0.279 | 3e-09 | |
| Q54NZ5 | 769 | Cullin-3 OS=Dictyostelium | no | no | 0.229 | 0.252 | 0.241 | 4e-09 | |
| Q94AH6 | 738 | Cullin-1 OS=Arabidopsis t | no | no | 0.202 | 0.231 | 0.267 | 7e-08 |
| >sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/842 (66%), Positives = 663/842 (78%), Gaps = 38/842 (4%)
Query: 1 MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
ME S CNL ILE L+D+++QEI ESY+GF T SL+ G D V EFV+HV LC
Sbjct: 1 MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60
Query: 61 KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
K+GL SL HFLRSLE+ FE+ S FW+HFD YS+ K Y +E+ VLCKA
Sbjct: 61 KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYSE------KKHHNYGEEIQIVLCKA 114
Query: 121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
LEEI +E QY EKCL ++VHA++S ++ S + + D+E VHLF+++Q M+SS LM +LP
Sbjct: 115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174
Query: 180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
HFPE+L+WYFK RLEELS IMDG DG + Q+ D MDLDEK + + GEMD+D+ + G
Sbjct: 175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231
Query: 240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
K KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct: 232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291
Query: 300 KAWIQFVSQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSE 354
K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA CCP PSE
Sbjct: 292 KEWIQ----TVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSE 343
Query: 355 GLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI 414
G+VRW+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI
Sbjct: 344 GIVRWKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI 403
Query: 415 SALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIV 474
S+LKYRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIV
Sbjct: 404 SSLKYRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIV 463
Query: 475 TMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPV 534
TMLTDG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA WEPDPV
Sbjct: 464 TMLTDGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPV 523
Query: 535 EADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELL 594
EADPLKGS ++RKVDILGM+V IIGSK+QLVNEYRVMLA+KLLNK+DY+ID+EIRT+ELL
Sbjct: 524 EADPLKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELL 583
Query: 595 KIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISS 654
KIHFGE+SMQRCEIMLNDLIDSKR N NIK K S G+EL E +S+ L +TI+S+
Sbjct: 584 KIHFGEASMQRCEIMLNDLIDSKRVNTNIK----KASQTGAELRENELSVDTLTSTILST 639
Query: 655 NFWPPMQDEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFT 714
NFWPP+QDE L +PG +D+LL+DYA R++EIKTPRKLLWKKNLGTVKLELQF+DRAMQFT
Sbjct: 640 NFWPPIQDEPLELPGPVDKLLSDYANRYHEIKTPRKLLWKKNLGTVKLELQFEDRAMQFT 699
Query: 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLY 774
V+P HAAIIMQFQ++ SWT K+LA +G+P+D L+RR+NFWISKG+++ES G SN +
Sbjct: 700 VSPTHAAIIMQFQEKKSWTYKDLAEVIGIPIDALNRRVNFWISKGVLRESTGANSNSSVL 759
Query: 775 NLVEGMVDSSKNGDNTGSCEELLGGDEDGERSVASVEDQIRNEMTVYEPTLFLVRYVANI 834
LVE + DS KN E GE S+ASVEDQ+R EMT+YE +++ +
Sbjct: 760 TLVESITDSGKNEGEELLTGEEE-----GETSIASVEDQLRKEMTIYE------KFIMGM 808
Query: 835 LT 836
LT
Sbjct: 809 LT 810
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UJX6|ANC2_HUMAN Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BZQ7|ANC2_MOUSE Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q551S9|APC2_DICDI Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum GN=anapc2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q874R3|APC2_SCHPO Anaphase-promoting complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P34514|APC2_CAEEL Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans GN=apc-2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q12440|APC2_YEAST Anaphase-promoting complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cul3 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 | Back alignment and function description |
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| >sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| 359473257 | 883 | PREDICTED: anaphase-promoting complex su | 0.973 | 0.933 | 0.750 | 0.0 | |
| 224098910 | 870 | predicted protein [Populus trichocarpa] | 0.952 | 0.926 | 0.728 | 0.0 | |
| 356569362 | 882 | PREDICTED: anaphase-promoting complex su | 0.972 | 0.933 | 0.710 | 0.0 | |
| 356537932 | 883 | PREDICTED: anaphase-promoting complex su | 0.964 | 0.924 | 0.710 | 0.0 | |
| 255562928 | 883 | E3 ubiquitin ligase apc2, putative [Rici | 0.971 | 0.930 | 0.719 | 0.0 | |
| 449452062 | 879 | PREDICTED: anaphase-promoting complex su | 0.968 | 0.931 | 0.686 | 0.0 | |
| 357474931 | 891 | Anaphase-promoting complex subunit [Medi | 0.968 | 0.919 | 0.671 | 0.0 | |
| 49533765 | 884 | Putative anaphase promoting complex prot | 0.971 | 0.929 | 0.684 | 0.0 | |
| 357502835 | 908 | Anaphase-promoting complex subunit [Medi | 0.963 | 0.897 | 0.665 | 0.0 | |
| 30678127 | 865 | anaphase-promoting complex subunit 2 [Ar | 0.950 | 0.929 | 0.667 | 0.0 |
| >gi|359473257|ref|XP_002271443.2| PREDICTED: anaphase-promoting complex subunit 2-like [Vitis vinifera] gi|296086344|emb|CBI31933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1210 bits (3131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/837 (75%), Positives = 710/837 (84%), Gaps = 13/837 (1%)
Query: 3 ESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKH 62
E+ S +LGIL+ ++D S+ EI+ES++GFC T +LLNG D++VG EFV+HV SLCK
Sbjct: 2 EAASSVSDLGILDSVDDASITEIMESWDGFCRATEALLNGHGDLSVGSEFVSHVHSLCKR 61
Query: 63 GLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALE 122
L SL HFLRSLEETFER ++FWRHFD Y+ V V+E +K I ++ + +VL KAL+
Sbjct: 62 SLGSLVQDHFLRSLEETFERNGATRFWRHFDAYTHVEVMEMSKSPIQENGIQKVLYKALD 121
Query: 123 EICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLPPH 181
++ +E QYQEKCL MLVHA++S +D E + D+E +HLF+KYQL+VSSVLM +LP H
Sbjct: 122 DVSLEKQYQEKCLLMLVHALQSYKDSISEERHNSDAERIHLFSKYQLIVSSVLMTTLPRH 181
Query: 182 FPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGK-QRTGEMDIDQSNNHGK 240
FPE+L+ YFKGRLEELSTIM GE ED N+S DKDDMDLDEK K GEMDID+ K
Sbjct: 182 FPEILHCYFKGRLEELSTIMAGEYEDDNESDDKDDMDLDEKNKVSYRGEMDIDECYQRRK 241
Query: 241 FSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIK 300
F E +KLVK+IGKVV DLR LGFTSM E+AYASAIF LLK KVHNLAG+DYRSSVLE IK
Sbjct: 242 FLENNKLVKNIGKVVRDLRNLGFTSMAEDAYASAIFLLLKDKVHNLAGDDYRSSVLESIK 301
Query: 301 AWIQFVSQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCC-PGTHNPSEGLVRW 359
WIQ AVPLQFL ALLAYLG+S SYD+P++GLKSPLAS P C PG PSEGL+RW
Sbjct: 302 EWIQ----AVPLQFLYALLAYLGDSVSYDNPSSGLKSPLASHPSSCYPGIDTPSEGLIRW 357
Query: 360 RLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKY 419
+LRLEYFAYETLQDLRIAKLFEIIVDYP+SSPAIEDLKQCLEYTGQHSKLV+SFISAL+Y
Sbjct: 358 QLRLEYFAYETLQDLRIAKLFEIIVDYPDSSPAIEDLKQCLEYTGQHSKLVDSFISALRY 417
Query: 420 RLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD 479
RLLTAGASTNDILHQYVSTIKALRTIDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD
Sbjct: 418 RLLTAGASTNDILHQYVSTIKALRTIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD 477
Query: 480 GTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPL 539
GTGGNPNG GN GDSLLEELNRDEENQEN G+DD FNID+KQ WINA WEPDPVEADP
Sbjct: 478 GTGGNPNGPGNTGDSLLEELNRDEENQENAGIDDDFNIDEKQDWINAERWEPDPVEADPS 537
Query: 540 KGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFG 599
KGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLA+KLLNKSDY+IDSEIRTLELLKIHFG
Sbjct: 538 KGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFG 597
Query: 600 ESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPP 659
ESSMQRCEIMLNDLIDSKRTN+NIKATI + S GSELGE GVSL +LDATIISSNFWPP
Sbjct: 598 ESSMQRCEIMLNDLIDSKRTNSNIKATITQPSQIGSELGETGVSLDILDATIISSNFWPP 657
Query: 660 MQDEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIH 719
+QDEAL +PG +DQLLADYAKRF++IKTPRKLLWKKNLGTVKLELQF+ R +QFTVAP+H
Sbjct: 658 IQDEALNIPGPVDQLLADYAKRFHKIKTPRKLLWKKNLGTVKLELQFEGRVVQFTVAPLH 717
Query: 720 AAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEG 779
AAIIMQFQDQTSWTSKNLAA++GVPVDVL+RRINFWISKGI+ ES+ T NDH++ LV+
Sbjct: 718 AAIIMQFQDQTSWTSKNLAASIGVPVDVLNRRINFWISKGILSESLVTDPNDHIFTLVDD 777
Query: 780 MVDSSKNGDNTGSCEELLGGDEDGERSVASVEDQIRNEMTVYEPTLFLVRYVANILT 836
MV+ KN N GSCEELL DE+GERSVASVEDQ+ EM VYE +++ +LT
Sbjct: 778 MVEPGKNSVNAGSCEELLVCDEEGERSVASVEDQLHKEMIVYE------KFIMGMLT 828
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224098910|ref|XP_002311316.1| predicted protein [Populus trichocarpa] gi|222851136|gb|EEE88683.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356569362|ref|XP_003552871.1| PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356537932|ref|XP_003537460.1| PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255562928|ref|XP_002522469.1| E3 ubiquitin ligase apc2, putative [Ricinus communis] gi|223538354|gb|EEF39961.1| E3 ubiquitin ligase apc2, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449452062|ref|XP_004143779.1| PREDICTED: anaphase-promoting complex subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357474931|ref|XP_003607751.1| Anaphase-promoting complex subunit [Medicago truncatula] gi|355508806|gb|AES89948.1| Anaphase-promoting complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|49533765|gb|AAT66764.1| Putative anaphase promoting complex protein, identical [Solanum demissum] | Back alignment and taxonomy information |
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| >gi|357502835|ref|XP_003621706.1| Anaphase-promoting complex subunit [Medicago truncatula] gi|355496721|gb|AES77924.1| Anaphase-promoting complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|30678127|ref|NP_178543.2| anaphase-promoting complex subunit 2 [Arabidopsis thaliana] gi|75151976|sp|Q8H1U5.1|APC2_ARATH RecName: Full=Anaphase-promoting complex subunit 2; AltName: Full=Cyclosome subunit 2 gi|23429518|gb|AAN10196.1| APC2 [Arabidopsis thaliana] gi|330250759|gb|AEC05853.1| anaphase-promoting complex subunit 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| TAIR|locus:2049173 | 865 | APC2 "AT2G04660" [Arabidopsis | 0.951 | 0.930 | 0.661 | 2.9e-286 | |
| DICTYBASE|DDB_G0276377 | 907 | anapc2 "anaphase promoting com | 0.468 | 0.436 | 0.350 | 2.1e-70 | |
| UNIPROTKB|F1NLT0 | 820 | ANAPC2 "Uncharacterized protei | 0.347 | 0.358 | 0.444 | 8e-65 | |
| UNIPROTKB|G3N1P6 | 627 | ANAPC2 "Uncharacterized protei | 0.319 | 0.430 | 0.450 | 7.9e-64 | |
| UNIPROTKB|F1PYP1 | 885 | TMEM210 "Uncharacterized prote | 0.319 | 0.305 | 0.450 | 2.4e-57 | |
| MGI|MGI:2139135 | 837 | Anapc2 "anaphase promoting com | 0.314 | 0.317 | 0.457 | 2.8e-57 | |
| UNIPROTKB|Q9UJX6 | 822 | ANAPC2 "Anaphase-promoting com | 0.319 | 0.328 | 0.447 | 7e-57 | |
| RGD|1305546 | 539 | Anapc2 "anaphase promoting com | 0.314 | 0.493 | 0.457 | 4.2e-56 | |
| ASPGD|ASPL0000051025 | 918 | AN10258 [Emericella nidulans ( | 0.463 | 0.427 | 0.351 | 1e-55 | |
| ZFIN|ZDB-GENE-081104-256 | 802 | anapc2 "anaphase promoting com | 0.299 | 0.315 | 0.436 | 1e-47 |
| TAIR|locus:2049173 APC2 "AT2G04660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2750 (973.1 bits), Expect = 2.9e-286, P = 2.9e-286
Identities = 555/839 (66%), Positives = 651/839 (77%)
Query: 1 MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
ME S CNL ILE L+D+++QEI ESY+GF T SL+ G D V EFV+HV LC
Sbjct: 1 MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60
Query: 61 KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
K+GL SL HFLRSLE+ FE+ S FW+HFD YS EK K Y +E+ VLCKA
Sbjct: 61 KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYS-----EK-KHHNYGEEIQIVLCKA 114
Query: 121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
LEEI +E QY EKCL ++VHA++S ++ S + + D+E VHLF+++Q M+SS LM +LP
Sbjct: 115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174
Query: 180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
HFPE+L+WYFK RLEELS IMDG DG + Q+ D MDLDEK + + GEMD+D+ + G
Sbjct: 175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231
Query: 240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
K KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct: 232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291
Query: 300 KAWIQFVSQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSE 354
K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA CCP PSE
Sbjct: 292 KEWIQ----TVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSE 343
Query: 355 GLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI 414
G+VRW+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI
Sbjct: 344 GIVRWKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFI 403
Query: 415 SALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIV 474
S+LKYRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIV
Sbjct: 404 SSLKYRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIV 463
Query: 475 TMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPV 534
TMLTDG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA WEPDPV
Sbjct: 464 TMLTDGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPV 523
Query: 535 EADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELL 594
EADPLKGS ++RKVDILGM+V IIGSK+QLVNEYRVMLA+KLLNK+DY+ID+EIRT+ELL
Sbjct: 524 EADPLKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELL 583
Query: 595 KIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQXXXXXXXXXXXXXXXXXDATIISS 654
KIHFGE+SMQRCEIMLNDLIDSKR N NIK K +TI+S+
Sbjct: 584 KIHFGEASMQRCEIMLNDLIDSKRVNTNIK----KASQTGAELRENELSVDTLTSTILST 639
Query: 655 NFWPPMQDEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFT 714
NFWPP+QDE L +PG +D+LL+DYA R++EIKTPRKLLWKKNLGTVKLELQF+DRAMQFT
Sbjct: 640 NFWPPIQDEPLELPGPVDKLLSDYANRYHEIKTPRKLLWKKNLGTVKLELQFEDRAMQFT 699
Query: 715 VAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLY 774
V+P HAAIIMQFQ++ SWT K+LA +G+P+D L+RR+NFWISKG+++ES G SN +
Sbjct: 700 VSPTHAAIIMQFQEKKSWTYKDLAEVIGIPIDALNRRVNFWISKGVLRESTGANSNSSVL 759
Query: 775 NLVEGMVDSSKNGDNTGSCXXXXXXXXXXXRSVASVEDQIRNEMTVYEPTLFLVRYVAN 833
LVE + DS KN G S+ASVEDQ+R EMT+YE F++ + N
Sbjct: 760 TLVESITDSGKN---EGE--ELLTGEEEGETSIASVEDQLRKEMTIYEK--FIMGMLTN 811
|
|
| DICTYBASE|DDB_G0276377 anapc2 "anaphase promoting complex subunit 2" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NLT0 ANAPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3N1P6 ANAPC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PYP1 TMEM210 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2139135 Anapc2 "anaphase promoting complex subunit 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UJX6 ANAPC2 "Anaphase-promoting complex subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1305546 Anapc2 "anaphase promoting complex subunit 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000051025 AN10258 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-081104-256 anapc2 "anaphase promoting complex subunit 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H1U5 | APC2_ARATH | No assigned EC number | 0.6674 | 0.9503 | 0.9294 | yes | no |
| Q8BZQ7 | ANC2_MOUSE | No assigned EC number | 0.3132 | 0.8416 | 0.8506 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
 |
|||
 | estExt_fgenesh4_pm.C_LG_VIII0355 | hypothetical protein (870 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pm.C_LG_XII0260 | • | • | • | 0.797 | ||||||
 | estExt_fgenesh4_pm.C_LG_XVIII0257 | • | • | • | 0.640 | ||||||
 | eugene3.01820024 | • | • | • | 0.626 | ||||||
 | gw1.211.19.1 | • | • | • | 0.626 | ||||||
 | fgenesh4_pg.C_LG_VIII000604 | • | • | • | 0.592 | ||||||
 | fgenesh4_pg.C_scaffold_57000164 | • | • | • | 0.462 | ||||||
 | fgenesh4_pm.C_LG_VII000424 | • | • | • | 0.459 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 846 | |||
| pfam00888 | 603 | pfam00888, Cullin, Cullin family | 9e-41 | |
| smart00182 | 143 | smart00182, CULLIN, Cullin | 6e-12 | |
| COG5647 | 773 | COG5647, COG5647, Cullin, a subunit of E3 ubiquiti | 1e-06 |
| >gnl|CDD|216175 pfam00888, Cullin, Cullin family | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 9e-41
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 7/219 (3%)
Query: 546 RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQR 605
K+D + ++ I KD YR MLA +LLN + D+E + +E LK G +
Sbjct: 371 EKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSK 430
Query: 606 CEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEAL 665
E M D+ SK N + K +E L EG+ L ++S+ FWP + E
Sbjct: 431 LERMFKDISLSKELNNSFKNHLENNLD----LLSEGIDLS---VLVLSTGFWPTLPTEPF 483
Query: 666 IVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQ 725
+P +++ L + + +++ + RKL W +LG +L+ +F+D+ + TV+ A+++
Sbjct: 484 SLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLL 543
Query: 726 FQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKES 764
F DQ T + L+ A G+ D+L R + + ++ +
Sbjct: 544 FNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLLLT 582
|
Length = 603 |
| >gnl|CDD|214545 smart00182, CULLIN, Cullin | Back alignment and domain information |
|---|
| >gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| KOG2165 | 765 | consensus Anaphase-promoting complex (APC), subuni | 100.0 | |
| KOG2167 | 661 | consensus Cullins [Cell cycle control, cell divisi | 100.0 | |
| PF00888 | 588 | Cullin: Cullin family; InterPro: IPR001373 Cullins | 100.0 | |
| KOG2166 | 725 | consensus Cullins [Cell cycle control, cell divisi | 100.0 | |
| COG5647 | 773 | Cullin, a subunit of E3 ubiquitin ligase [Posttran | 100.0 | |
| smart00182 | 142 | CULLIN Cullin. | 99.98 | |
| KOG2284 | 728 | consensus E3 ubiquitin ligase, Cullin 2 component | 99.94 | |
| KOG2285 | 777 | consensus E3 ubiquitin ligase, Cullin 1 component | 99.9 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 95.72 | |
| PF08672 | 60 | APC2: Anaphase promoting complex (APC) subunit 2; | 95.55 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 94.63 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 94.31 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 94.0 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 93.82 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 93.71 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 93.03 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 90.82 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 90.82 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 90.43 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 90.36 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 90.18 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 89.53 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 89.45 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 89.03 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 88.39 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 87.13 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 86.65 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 86.54 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 86.43 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 86.16 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 86.13 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 86.12 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 85.66 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 85.35 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 85.35 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 85.09 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 84.66 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 84.26 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 84.18 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 83.76 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 82.95 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 82.71 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 82.24 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 82.17 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 81.97 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 81.91 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 81.87 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 81.35 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 80.12 |
| >KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-131 Score=1112.57 Aligned_cols=712 Identities=39% Similarity=0.607 Sum_probs=602.1
Q ss_pred hhhccChhhHHHHHHHhhhhhccchhhccCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhchhhhhccc
Q 003120 13 ILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHF 92 (846)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~fw~~~ 92 (846)
+-|++.++-.+ |+. +.|+..+..+ ++++++ +..++.||+.++..++|++++|..++.++. ||+||
T Consensus 3 ~sd~~~~~~~~-i~~-~~g~~~s~~s--------~~e~~~---~~~~~~~~~~s~s~~~~~~vl~~~~~~~~~--fw~~i 67 (765)
T KOG2165|consen 3 DSDTLWQTVSS-IFP-ILGDLNSVLS--------PMEDND---FKSLSQLGLPSLSIENFIKVLQFNNQKTIP--FWSAI 67 (765)
T ss_pred CcHHHHHHHHH-Hhh-hccchhhhcC--------cCchHH---HHHHHhcccchhhHHHHHHHHHHHHhhcch--HHHHH
Confidence 34455666566 777 6666655543 777777 888999999999999999999999999986 99999
Q ss_pred ccccchhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccCCCCCCCCcchhhHHHHHHHHHHH
Q 003120 93 DVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSS 172 (846)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (846)
.++...+...++.- ...+.+.-. .+.+..++. .++++++. ..+-..++++|+|.
T Consensus 68 ~~~~~~~~~~~~i~--------~l~d~~~ll----~~~~~~yi~--~~~l~~~l------------~~g~~~~i~~~~r~ 121 (765)
T KOG2165|consen 68 NQSLAKSIVAKNIE--------NLLDKTGLL----SSFKDFYIF--QVRLRFFL------------LFGNGDRIKDCLRW 121 (765)
T ss_pred HHHHHhcchhhhHH--------HHHhHHhHH----HHHHHHHHH--HHHHHHHH------------HhCcccHHHHHHHH
Confidence 86654422111111 111111111 111122211 12221100 01111249999999
Q ss_pred HHhccCCCChHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCcccccccccccCCCCCcccccccccccchHHHHHHHH
Q 003120 173 VLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIG 252 (846)
Q Consensus 173 ~l~~~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 252 (846)
.|++++|++|.+|+.+||+..|.+++..|.....+. | .|+|++ ..||+.....|+|...+++|+
T Consensus 122 ~~~~~lP~~f~~vl~~~~~~~l~~~~~~~~~~~~~~---d--~~~dl~-----------~~gc~t~~~k~~cd~~~~~f~ 185 (765)
T KOG2165|consen 122 ELYYELPLRFIEVLDVYFNEHLLELNKAMHLLLTRN---D--HDIDLD-----------LQGCSTRKDKLICDQLVDLFN 185 (765)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHhhcccCC---C--cccCcc-----------ccccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997665431 1 113332 257777777788888999999
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHhhhcccchhHHHHHHHHhhCCCCCCCCCC
Q 003120 253 KVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQFVSQAVPLQFLNALLAYLGESESYDSPT 332 (846)
Q Consensus 253 ~~~~~L~~lgl~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~l~~l~~Wi~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 332 (846)
++++.|.++||.+++.+|++++++..|+++++++|+|.|++++++++.+||+ +|+.+|+..|...
T Consensus 186 ~l~~~Lk~~~l~~~~~ea~~s~l~l~l~~~l~d~~~~~~~~s~l~s~~~wI~----~~~~~wl~~V~~~----------- 250 (765)
T KOG2165|consen 186 QLVQKLKSLNLSSVSTEAIVSVLYLKLKAFLEDRCSGVWDRSVLESFNKWIN----TVWGQWLKLVFSQ----------- 250 (765)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCc-----------
Confidence 9999999999988999999999999999999999999999999999999999 8999999887421
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHH
Q 003120 333 AGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVES 412 (846)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~ 412 (846)
+...+|+.++++++|++|+++||+++|+||+|||+|.|||+|||.||+++++|.+||.+
T Consensus 251 ---------------------e~~~~~~~~l~~~~~~~fa~lr~~~~f~Iv~dyPdS~~aiedLK~cle~t~qr~~ltes 309 (765)
T KOG2165|consen 251 ---------------------ESDHAFKLTLDYFFYEIFARLRINEIFDIVLDYPDSKPAIEDLKYCLERTDQRVYLTES 309 (765)
T ss_pred ---------------------ccccceeeeeHHHHHHHHHHHHHhhHHHHHHhCCccchhHHHHHHHHHHhcchHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHhHHHHhhcCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCch
Q 003120 413 FISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAG 492 (846)
Q Consensus 413 f~~~l~~RLLhpG~~T~dIL~~YIs~Ikal~~LDPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~ 492 (846)
|++++++|||||||+|.|||++|||||||||+|||+||+|++||.|||+|||+|+|||+|||++|||..+.+ ..
T Consensus 310 fi~~l~~riL~asv~T~DIL~~YVstIkalr~lDptgV~Le~v~~pIR~YLr~R~DtVk~iVs~lt~~~k~~-----~~- 383 (765)
T KOG2165|consen 310 FISDLKTRILTASVDTVDILLRYVSTIKALRVLDPTGVILEKVTEPIRDYLRERKDTVKQIVSGLTDLPKSE-----GE- 383 (765)
T ss_pred HHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHhhCCcceehHHhhHhHHHHHhhCccHHHHHHHHHhcCCccC-----Cc-
Confidence 999999999999999999999999999999999999999999999999999999999999999999764321 12
Q ss_pred hhHHHHhcc-CcccccccCCCCCCcchhHHhhhhcccCCCCCCCCCCCCCCCccchhhHHHhHhhhcCCHHHHHHHHHHH
Q 003120 493 DSLLEELNR-DEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVM 571 (846)
Q Consensus 493 ~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~~~~~~~nW~PdPvda~p~~~~k~~k~lD~I~~Lf~il~sKDvF~~eYr~l 571 (846)
.++..|++. ++..++..+.++|+..+..+.|+ ..||+|||+||+|.+++++.++.|++++|+++|||||.|++|||++
T Consensus 384 ~Dl~~els~~d~~~~e~i~~n~D~~td~~~~~e-~~~W~PdPiDA~pg~~s~k~r~~Di~~mLVsIygSKElfv~EyRnL 462 (765)
T KOG2165|consen 384 KDLSAELSKVDTLHDEDIGENDDSPTDDFMNYE-ILNWMPDPIDADPGKGSSKYRKVDIFGMLVSIYGSKELFVKEYRNL 462 (765)
T ss_pred ccHHHHHhccCccchhhcccCcCCCcchhhhhh-hhhccCCCccCCCCCCCcccccccHHHHHHHHHcchHHHHHHHHHH
Confidence 256667766 55556677888888888888886 6799999999999999888999999999999999999999999999
Q ss_pred HHHHHccCCCCChHHHHHHHHHHhhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCccccceeEEe
Q 003120 572 LADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATI 651 (846)
Q Consensus 572 LAkRLL~~~s~s~d~E~~~LelLK~rfG~~~l~k~EvMLkDI~~Skrln~~fk~~~~~~~~~~~~~~~~~l~~~~~~v~I 651 (846)
||+|||+..+|+.+.|++++++||.|||++.+|.|+|||+|+.+|+++|++|+...... .+....+.+.++++|
T Consensus 463 LAdRLl~~~dy~~E~E~R~leLLKlrFgEt~lq~CevML~Dv~dS~~id~~i~~~~~~~------r~~e~~~~~~i~~~I 536 (765)
T KOG2165|consen 463 LADRLLTLTDYDPEKEIRNLELLKLRFGETSLQGCEVMLNDVIDSRRIDQSIHNESELS------RGAEEVPDFGISATI 536 (765)
T ss_pred HHHHHhhhcccCHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh------cccccCCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999753111 011223457899999
Q ss_pred eccCCCCCCCCCCcccChHHHHHHHHHHhhhhccCCCceEEeecCCCceEEEEEECCceeEEEecHHHHHHHHHhcCCCc
Q 003120 652 ISSNFWPPMQDEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQFQDQTS 731 (846)
Q Consensus 652 LS~~fWP~~~~~~~~LP~eL~~~~e~F~k~Y~~~k~~RkL~W~~~LG~veLel~f~dr~~el~VS~~QAaILl~Fn~~~~ 731 (846)
||+.|||++.++.|.||.+++..++.|.+.|+..|++|||.|++++|+|+|+++|+||+++++|||.||+||++|+++++
T Consensus 537 lS~~fWP~~~~~~~~lP~pl~~el~~Y~~~Y~~~K~~RkL~w~~~lG~Veieie~~DRtl~~tVsp~qA~iI~~Fqek~t 616 (765)
T KOG2165|consen 537 LSSLFWPPLCDEAFHLPGPLEAELDKYAEIYEQLKRGRKLQWLKNLGKVEIEIEFEDRTLVLTVSPEQAAIINLFQEKNT 616 (765)
T ss_pred hhhhcCCccccccccCChhHHHHHHHHHHHHHHhccCCeeeeecccCeEEEEEEEcCeEEEEeeCHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccCCCCCCCCeEEEecCCCCCCCCCCCCCCcccccCCCCCC-cccccCH
Q 003120 732 WTSKNLAAAVGVPVDVLSRRINFWISKGIIKESVGTGSNDHLYNLVEGMVDSSKNGDNTGSCEELLGGDEDG-ERSVASV 810 (846)
Q Consensus 732 ~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~g~~~~~d~f~vNe~f~~~~~~~~~~~~~~~~~~~~~e~-~~~~~s~ 810 (846)
||++++++.+|||...++|+|.||+++|||++.++. .++.+|+++|+-.+..+..+ ..+..+|++. +++++|+
T Consensus 617 wt~eelse~l~ip~~~lrrrL~fWi~~GvL~e~~~~-s~tgt~T~iEse~d~~q~~~-----~~~~e~eee~~e~~~as~ 690 (765)
T KOG2165|consen 617 WTLEELSESLGIPVPALRRRLSFWIQKGVLREEPII-SDTGTLTVIESEMDFDQAEG-----TVLLEAEEENYESHNASE 690 (765)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCeeecCCCC-CCCceeeeccccccccccCC-----CcccccccccchhhhhhH
Confidence 999999999999999999999999999999987643 56789999997665544321 2233444444 8889999
Q ss_pred HHHHhccccccchhhHHHHHhhCcccch
Q 003120 811 EDQIRNEMTVYEPTLFLVRYVANILTQK 838 (846)
Q Consensus 811 e~q~~ee~~v~w~~~fI~gMLTN~~~~~ 838 (846)
.+|.++|+++||+ ||+|||||||+||
T Consensus 691 vdqle~el~~~~~--fI~gMLTNlgsm~ 716 (765)
T KOG2165|consen 691 VDQLEEELTLFRS--FIVGMLTNLGSMK 716 (765)
T ss_pred HHHHHHHHHHHHH--HHHHHhcCcccch
Confidence 9999999999999 9999999999994
|
|
| >KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) | Back alignment and domain information |
|---|
| >KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00182 CULLIN Cullin | Back alignment and domain information |
|---|
| >KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
| >PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase | Back alignment and domain information |
|---|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 846 | ||||
| 4a0k_A | 742 | Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp | 1e-05 | ||
| 2hye_C | 759 | Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl | 1e-05 | ||
| 1u6g_A | 776 | Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le | 1e-04 | ||
| 1ldj_A | 760 | Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu | 1e-04 | ||
| 4a0l_E | 726 | Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp | 5e-04 | ||
| 4f52_A | 282 | Structure Of A Glomulin-Rbx1-Cul1 Complex Length = | 5e-04 | ||
| 4a0c_C | 741 | Structure Of The Cand1-Cul4b-Rbx1 Complex Length = | 5e-04 | ||
| 1ldk_B | 366 | Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu | 7e-04 |
| >pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 | Back alignment and structure |
|
| >pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 | Back alignment and structure |
| >pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 | Back alignment and structure |
| >pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 | Back alignment and structure |
| >pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 | Back alignment and structure |
| >pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 | Back alignment and structure |
| >pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 | Back alignment and structure |
| >pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-38
Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 12/234 (5%)
Query: 542 SRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGES 601
R +D + ++ I KD Y+ LA +LL +D+E L LK G +
Sbjct: 427 EELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAA 486
Query: 602 SMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ 661
+ E M D+ SK + K ++ QS + L I++ +WP
Sbjct: 487 FTSKLEGMFKDMELSKDIMVHFKQHMQNQSD------SGPIDL---TVNILTMGYWPTYT 537
Query: 662 DEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAA 721
+ + + +L + + + RKL W+ LG L+ +F + +F V+
Sbjct: 538 PMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTL 597
Query: 722 IIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWI---SKGIIKESVGTGSNDH 772
+++ F + ++ + + A G+ L R + ++ +IK G D
Sbjct: 598 VLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDG 651
|
| >1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 | Back alignment and structure |
|---|
| >3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| 2hye_C | 759 | Cullin-4A, CUL-4A; beta propeller, ring finger, zi | 100.0 | |
| 1ldj_A | 760 | Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc | 100.0 | |
| 3dpl_C | 382 | Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int | 100.0 | |
| 1ldd_A | 74 | APC2WHB, anaphase promoting complex; ubiquitin, li | 98.25 | |
| 4a64_A | 354 | Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo | 96.72 | |
| 4eoz_B | 364 | Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro | 96.56 | |
| 4ap2_B | 410 | Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c | 96.09 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 92.99 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 92.48 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 92.28 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 91.59 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 90.94 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 90.92 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 90.84 | |
| 2wzk_A | 391 | Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho | 90.76 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 90.58 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 90.43 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 90.42 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 89.66 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 89.62 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 89.33 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 89.32 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 89.32 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 88.41 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 88.28 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 88.24 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 87.96 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 87.73 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 87.6 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 87.49 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 87.44 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 87.42 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 87.18 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 87.16 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 87.1 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 86.96 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 86.74 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 86.65 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 86.62 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 86.57 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 86.51 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 86.46 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 86.31 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 86.21 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 86.21 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 86.15 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 86.05 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 85.93 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 85.93 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 85.71 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 85.59 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 85.46 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 85.44 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 85.43 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 85.33 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 85.29 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 85.27 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 85.17 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 85.14 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 85.1 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 85.05 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 84.74 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 84.7 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 84.67 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 84.63 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 84.55 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 84.52 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 84.49 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 84.31 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 84.23 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 84.13 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 84.11 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 83.97 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 83.82 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 83.75 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 83.64 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 83.63 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 83.51 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 83.38 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 83.2 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 83.01 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 82.96 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 82.93 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 82.75 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 82.65 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 82.24 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 82.06 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 81.89 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 81.71 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 81.56 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 81.55 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 80.92 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 80.78 |
| >2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-51 Score=488.59 Aligned_cols=435 Identities=18% Similarity=0.244 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHhHHHHhh
Q 003120 366 FAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTI 445 (846)
Q Consensus 366 ~~y~~l~~lRi~ElFdIIv~yPdS~pai~DLr~cL~~~~~r~~Lv~~f~~~l~~RLLhpG~~T~dIL~~YIs~Ikal~~L 445 (846)
..|-.++..|+.|-.++|..|+++ .+...|..|+++.-...++..-+.+.+. .||+.+ .+.|+-..|--..|
T Consensus 257 ~~Yl~~~e~rl~eE~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~-~lL~~~-~~~dL~~mY~L~~r----- 328 (759)
T 2hye_C 257 PEYLNHVSKRLEEEGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLD-HLLDEN-RVPDLAQMYQLFSR----- 328 (759)
T ss_dssp HHHHHHHHHHHHHTHHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHH-HHHTTT-CHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHhcC-CHHHHHHHHHHHcc-----
Confidence 558889999999999999999998 6999999999988776665444444566 477755 78888888865544
Q ss_pred cCcccchhhhchhhHHHhhccCchHHHHHHhhcCCCCCCCCCCCCchhhHHHHhcc-CcccccccCCCCCCcchhHHhhh
Q 003120 446 DPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNR-DEENQENIGVDDGFNIDDKQAWI 524 (846)
Q Consensus 446 DPsGvlL~~V~~pIr~YLr~R~DtVr~IV~~L~d~~~~~~~~~~~~~~~L~eeL~~-~~~~~~~~~~ddd~~~d~k~~~~ 524 (846)
.|.| |+.++.+++.|+++++ ..||. +.++ +...++.|++...+ +.....+|+.|..|....+.+|+
T Consensus 329 v~~~--l~~l~~~~~~~I~~~g---~~iv~---~~~~-----~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~ 395 (759)
T 2hye_C 329 VRGG--QQALLQHWSEYIKTFG---TAIVI---NPEK-----DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFE 395 (759)
T ss_dssp STTH--HHHHHHHHHHHHHHHH---HHHHS---CGGG-----TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred Ccch--HHHHHHHHHHHHHHHh---HHHhc---Cccc-----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2444 8999999999999999 55642 2211 23577788877666 45556678888777777788999
Q ss_pred hcccCCC-CCCCCCC-------CCCCCc------cchhhHHHhHhhhcCCHHHHHHHHHHHHHHHHccCCCCChHHHHHH
Q 003120 525 NAVCWEP-DPVEADP-------LKGSRN------RRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRT 590 (846)
Q Consensus 525 ~~~nW~P-dPvda~p-------~~~~k~------~k~lD~I~~Lf~il~sKDvF~~eYr~lLAkRLL~~~s~s~d~E~~~ 590 (846)
.++|+.+ .|++... .++.|+ +..+|.|+.||+|+++||+|+++|+++||+|||..++++.|.|+.|
T Consensus 396 ~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~ 475 (759)
T 2hye_C 396 TFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSM 475 (759)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 9999975 3444211 122221 3568899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCccccceeEEeeccCCCCCCCCCCcccChH
Q 003120 591 LELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEALIVPGH 670 (846)
Q Consensus 591 LelLK~rfG~~~l~k~EvMLkDI~~Skrln~~fk~~~~~~~~~~~~~~~~~l~~~~~~v~ILS~~fWP~~~~~~~~LP~e 670 (846)
|++||.+||.+++++|++||+||..|++++..|+++..+.. ....+++++.|||+++||.++..++.+|++
T Consensus 476 i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~---------~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~ 546 (759)
T 2hye_C 476 LSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS---------DSGPIDLTVNILTMGYWPTYTPMEVHLTPE 546 (759)
T ss_dssp HHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------CCCCCEEEEEEEETTTSCCCCCCCCCCCHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------CCCCCceEEEEeCCCCCCCCCCCCCcCCHH
Confidence 99999999999999999999999999999999998764210 112478999999999999999889999999
Q ss_pred HHHHHHHHHhhhhccCCCceEEeecCCCceEEEEEECCceeEEEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHH
Q 003120 671 IDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSR 750 (846)
Q Consensus 671 L~~~~e~F~k~Y~~~k~~RkL~W~~~LG~veLel~f~dr~~el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r 750 (846)
|+..++.|++||.++|+||+|+|.++||+|+|+++|++++++++|||+||+||++||+.++||++||++.|||+++.|++
T Consensus 547 l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r 626 (759)
T 2hye_C 547 MIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRR 626 (759)
T ss_dssp HHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--hCCccccc-CCC-CCCCCeEEEecCCCCCCCCCCCCCCcccccCCCCCCcccccCHHHHHhccccccchhhH
Q 003120 751 RINFWI--SKGIIKES-VGT-GSNDHLYNLVEGMVDSSKNGDNTGSCEELLGGDEDGERSVASVEDQIRNEMTVYEPTLF 826 (846)
Q Consensus 751 ~L~~wv--~~gVL~e~-~g~-~~~~d~f~vNe~f~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~e~q~~ee~~v~w~~~f 826 (846)
+|++|+ +.|||.+. .|+ ..++|+|+||++|+++..+++..... .. +...+. ..+.+.-.+.+.....+ .
T Consensus 627 ~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~---~~-e~~~e~-~~t~~~v~~dR~~~i~A--a 699 (759)
T 2hye_C 627 TLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQ---MK-ETVEEQ-VSTTERVFQDRQYQIDA--A 699 (759)
T ss_dssp HHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGG---GC-CCHHHH-HHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEecccc---cc-ccchhh-hhhHHHHHHHHHHHHHH--H
Confidence 999999 56899753 343 45789999999999988876432111 10 100010 11111112233345677 8
Q ss_pred HHHHhhCcccc
Q 003120 827 LVRYVANILTQ 837 (846)
Q Consensus 827 I~gMLTN~~~~ 837 (846)
||.++..-.+|
T Consensus 700 IVRIMK~rK~l 710 (759)
T 2hye_C 700 IVRIMKMRKTL 710 (759)
T ss_dssp HHHHHHHSSEE
T ss_pred HHHHHhhcCCC
Confidence 99888776665
|
| >1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A | Back alignment and structure |
|---|
| >3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C | Back alignment and structure |
|---|
| >1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34 | Back alignment and structure |
|---|
| >4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} | Back alignment and structure |
|---|
| >4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B | Back alignment and structure |
|---|
| >4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
| >2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 846 | ||||
| d1ldja3 | 276 | e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma | 5e-39 | |
| d2hyec3 | 273 | e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien | 2e-38 |
| >d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Cullin homology domain superfamily: Cullin homology domain family: Cullin homology domain domain: Cullin homolog 1, cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (363), Expect = 5e-39
Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 11/230 (4%)
Query: 547 KVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRC 606
++ + ++ I KD Y MLA +L++++ D+E + LK G +
Sbjct: 35 TLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKL 94
Query: 607 EIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEALI 666
+ M D+ SK N K + + ++SS WP Q
Sbjct: 95 QRMFQDIGVSKDLNEQFKKHLTNSEPLDLDF----------SIQVLSSGSWPFQQSCTFA 144
Query: 667 VPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQFDDRAMQFTVAPIHAAIIMQF 726
+P +++ + + + RKL W L +L + AI++Q+
Sbjct: 145 LPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQY 204
Query: 727 QDQTSWTSKNLAAAVGVPVDVLSRRINFWI-SKGIIKESVGTGSNDHLYN 775
+ ++T + L + + +D+L++ + + SK ++ E ++
Sbjct: 205 NTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELK 254
|
| >d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| d1ldja3 | 276 | Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax | 100.0 | |
| d2hyec3 | 273 | Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ldda_ | 74 | Anaphase promoting complex (APC) {Baker's yeast (S | 98.16 | |
| d2hyec2 | 347 | Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 92.59 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 92.57 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 92.07 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 91.99 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.76 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 91.04 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 91.02 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 90.71 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 90.35 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 89.95 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 89.92 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 88.54 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 88.03 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 87.91 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 87.62 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 87.61 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 87.46 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 86.79 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 86.24 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 85.67 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 84.68 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 84.64 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 84.52 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 84.23 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 84.19 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 83.82 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 83.73 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 81.78 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 81.62 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 81.57 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 81.34 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 81.02 |
| >d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Cullin homology domain superfamily: Cullin homology domain family: Cullin homology domain domain: Cullin homolog 1, cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-42 Score=365.85 Aligned_cols=234 Identities=18% Similarity=0.269 Sum_probs=215.4
Q ss_pred chhhHHHhHhhhcCCHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHhhhhCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003120 546 RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKA 625 (846)
Q Consensus 546 k~lD~I~~Lf~il~sKDvF~~eYr~lLAkRLL~~~s~s~d~E~~~LelLK~rfG~~~l~k~EvMLkDI~~Skrln~~fk~ 625 (846)
..++.|+.||+|+++||+|+.+|+++||+|||..++++.+.|..+|++||.+||.+++.+|++|++|+..|++++..|++
T Consensus 34 ~~l~~i~~if~~l~~KD~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~g~~~~~kl~~Ml~D~~~S~~~~~~f~~ 113 (276)
T d1ldja3 34 DTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK 113 (276)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhccCCCcccCCccccceeEEeeccCCCCCCCCCCcccChHHHHHHHHHHhhhhccCCCceEEeecCCCceEEEEE
Q 003120 626 TIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQDEALIVPGHIDQLLADYAKRFNEIKTPRKLLWKKNLGTVKLELQ 705 (846)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~~~~~v~ILS~~fWP~~~~~~~~LP~eL~~~~e~F~k~Y~~~k~~RkL~W~~~LG~veLel~ 705 (846)
...+. ....+++++.||++++||.++..++.+|++|+..++.|+++|.++|++|+|.|.+++|+|+|+++
T Consensus 114 ~~~~~----------~~~~~~~~v~Vlt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~RkL~w~~~lg~~~l~~~ 183 (276)
T d1ldja3 114 HLTNS----------EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 183 (276)
T ss_dssp HHTTT----------CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEES
T ss_pred HHhcc----------CCcCceEEEEEeeCCccCcCCCCCccCCHHHHHHHHHHHHHHHHhCCCCeEEEecCCCcEEEEEE
Confidence 76421 11236799999999999999988999999999999999999999999999999999999999999
Q ss_pred ECCceeEEEecHHHHHHHHHhcCCCcccHHHHHHHhCCCHHHHHHHHHHHHhCCcccccC-C------CCCCCCeEEEec
Q 003120 706 FDDRAMQFTVAPIHAAIIMQFQDQTSWTSKNLAAAVGVPVDVLSRRINFWISKGIIKESV-G------TGSNDHLYNLVE 778 (846)
Q Consensus 706 f~dr~~el~VS~~QAaILl~Fn~~~~~Ti~EL~~~lgm~~~~L~r~L~~wv~~gVL~e~~-g------~~~~~d~f~vNe 778 (846)
|++++++|+||++||+||++||+.+++|+++|++.+|++.+.++++|.+|++.|+|.... + ...+++.|.+|.
T Consensus 184 ~~~~~~~l~vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~~~~~~~~~~~~~~~~~~~~~~N~ 263 (276)
T d1ldja3 184 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYL 263 (276)
T ss_dssp SSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECS
T ss_pred ECCCcEEEEECHHHHHHHHhhcCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEecCCCCCccccccCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999985432 1 135678999999
Q ss_pred CCCCCCCCCCC
Q 003120 779 GMVDSSKNGDN 789 (846)
Q Consensus 779 ~f~~~~~~~~~ 789 (846)
+|+++..++.+
T Consensus 264 ~f~~~~~ki~v 274 (276)
T d1ldja3 264 GYKNKKLRVNI 274 (276)
T ss_dssp SCCCSSSSBCC
T ss_pred CCCCCCeEEEe
Confidence 99998888653
|
| >d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|