Citrus Sinensis ID: 003128

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-----
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFATAKT
ccccccccccEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEcccccEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEcccccccccccHHHHHcccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEccccHHHHHHHHccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEEEccccccccccHHHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEcccccHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEEcccccEEcccc
cccccccccccEEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHccccEEEcccHccccccHHHHHHHHHHHHHHHHHccHcccccccccHHHHcccccEEEEEEEEcccEEEEEEcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccccEEccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcHcccccccccccccccccccccccHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccccEEEEEEEEcEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcccHHHHHHHHHcccEEcccccHHccccHHHHHHHHHHHHHHHHccHHccccHHHHHcHcHHHHccccccEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEcc
matpaaagggwyrarvkavpsgdSLVITAlsnpnpgpprektltlssiitprlarrggldepfawDSREFLRKLCigkevtfrvdyavpnigrefgtvilgDKNVAMLVVSEGWAKVkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYvegeevsngaavegkQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLnlqeapvigafnpkkGEIVLAQFsadnswnramvsellpplqfatakt
matpaaagggwyrARVKAVPSGDSLVITAlsnpnpgpprekTLTLSSIItprlarrggldepfawdSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVkeqgsqkgeASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEevsngaavegkqkeVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSEllpplqfatakt
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFATAKT
*********GWYRARVKAVP**DSLVIT****************LSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKV*************LAELLRL*****LQGLGRW*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELL**********
***********YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST******STDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNY*****************KVVEVVSGDCIIVADDSIPYGNALAERRVNLS*******************AREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFL*******************AGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDA*************************IQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQ***************FNPKKGEIVLAQFSADNSWNRAMVSELL**********
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAK**********ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFATAKT
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQG*GR********EASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV*********************************************TDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSP***************A*GQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFATA**
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MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFATAKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query845 2.2.26 [Sep-21-2011]
Q66X93 909 Staphylococcal nuclease d yes no 0.828 0.770 0.348 1e-112
Q78PY7 910 Staphylococcal nuclease d yes no 0.828 0.769 0.348 1e-112
Q863B3 910 Staphylococcal nuclease d yes no 0.828 0.769 0.341 1e-111
Q5REU4 910 Staphylococcal nuclease d yes no 0.828 0.769 0.342 1e-111
Q7KZF4 910 Staphylococcal nuclease d yes no 0.828 0.769 0.341 1e-111
Q7ZT42 897 Staphylococcal nuclease d yes no 0.831 0.783 0.342 1e-111
Q9Y7U7878 Staphylococcal nuclease d yes no 0.453 0.436 0.281 1e-34
O60168230 Probable endonuclease C19 no no 0.202 0.743 0.237 3e-07
Q9BXT4 1180 Tudor domain-containing p no no 0.214 0.153 0.248 0.0008
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function desciption
 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 300/861 (34%), Positives = 444/861 (51%), Gaps = 161/861 (18%)

Query: 13  RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL---------DEPF 63
           R  VK V SG ++++     P  GPP E+ + LS+I    LARR            DEP+
Sbjct: 20  RGIVKMVLSGCAIIVRG--QPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPW 77

Query: 64  AWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKE 119
           A+ +REFLRK  IGKEV F ++   P  GRE+G + LG     +N+A  +V+EG A  +E
Sbjct: 78  AFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLASRRE 136

Query: 120 QGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMAL 179
            G +    +P    L   EEQAK    G WS+  G    +IR+L    I +  +F     
Sbjct: 137 -GMRAN--NPEQNRLSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF----- 185

Query: 180 LDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 239
           +D++  +P+  I+E  RDGS +R  LLP+   V V ++GI+ P   R           ET
Sbjct: 186 VDSHHQKPVNAIIEHVRDGSVVRALLLPDHYLVTVMLSGIKCPTFRR-----------ET 234

Query: 240 NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVD 299
           +G                            T EPFA +AK+FTE R+L R+V+I+LE   
Sbjct: 235 DG--------------------------SETPEPFAAEAKFFTESRLLQRDVQIILESCH 268

Query: 300 KFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRL 359
             +N++G++ +P+G    ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RL
Sbjct: 269 N-QNILGTILHPNG----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRL 322

Query: 360 RMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419
           R+W +YVPP +N     D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P
Sbjct: 323 RIWRDYVPPTANLDQ-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPP 375

Query: 420 K-----IGNPRKDEKP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGA 471
           +     I +  K  +P     Y  EAREFLR +LIG++V+V ++Y R     A+P     
Sbjct: 376 RLEGDNIQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVSVTVDYIRP----ASP----- 426

Query: 472 KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSN 531
                          A    PA  E   AT T                            
Sbjct: 427 ---------------ATETVPAFSERTCATVT---------------------------- 443

Query: 532 AAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 590
                 G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P
Sbjct: 444 ----IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVP 499

Query: 591 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 650
           +  + D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ 
Sbjct: 500 IHRVADIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIE 558

Query: 651 CP--GRN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVA 700
           CP   RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++
Sbjct: 559 CPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLS 618

Query: 701 VILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEG 758
           V+L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + 
Sbjct: 619 VLLVEHALSKVH--FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEEQPVEEVMPVLEEKE 676

Query: 759 KQKEVLKVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIV 816
           +      V VTEI     FYVQ V  G Q +  + + + S      PV GA+ P++GE  
Sbjct: 677 RSASYKPVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRSDISSHPPVEGAYAPRRGEFC 735

Query: 817 LAQFSADNSWNRAMVSELLPP 837
           +A+F  D  W RA V ++  P
Sbjct: 736 IAKF-VDGEWYRARVEKVESP 755
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability. Functions as a transcriptional coactivator for STAT5. Plays a role in cell viability.
Rattus norvegicus (taxid: 10116)
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|O60168|LCL3_SCHPO Probable endonuclease C19F8.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F8.04c PE=3 SV=1 Back     alignment and function description
>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query845
307135996 988 short-chain dehydrogenase/reductase [Cuc 0.940 0.804 0.749 0.0
224136368 984 predicted protein [Populus trichocarpa] 0.938 0.805 0.755 0.0
449440482 988 PREDICTED: staphylococcal nuclease domai 0.940 0.804 0.750 0.0
356516458 990 PREDICTED: staphylococcal nuclease domai 0.944 0.806 0.748 0.0
356508886 990 PREDICTED: staphylococcal nuclease domai 0.944 0.806 0.742 0.0
225447723 1000 PREDICTED: staphylococcal nuclease domai 0.943 0.797 0.748 0.0
255539999 988 ebna2 binding protein P100, putative [Ri 0.943 0.806 0.737 0.0
356527378 995 PREDICTED: staphylococcal nuclease domai 0.946 0.804 0.736 0.0
224122258 978 hypothetical protein POPTRDRAFT_806590 [ 0.932 0.805 0.736 0.0
357464897 992 nuclease domain-containing protein [Medi 0.944 0.804 0.732 0.0
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
 Score = 1283 bits (3321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/835 (74%), Positives = 713/835 (85%), Gaps = 40/835 (4%)

Query: 2   ATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDE 61
           ++ A A  GWYR RVKAVPSGD LVITA+++  PGPP EKT+TLSS+I PRLARRGG+DE
Sbjct: 3   SSTAGATTGWYRGRVKAVPSGDCLVITAMASSKPGPPPEKTITLSSLIAPRLARRGGVDE 62

Query: 62  PFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQG 121
           PFAWDSRE+LRKLCIGKEV FRVDY VP+IGREFG+V L DKN+A LVVSEGWAKV+EQG
Sbjct: 63  PFAWDSREYLRKLCIGKEVAFRVDYTVPSIGREFGSVFLCDKNIAALVVSEGWAKVREQG 122

Query: 122 SQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLD 181
            QKGE SP+LAELLRLE+QAK QGLGRWSKVPGA+EASIRNLPPSAIGD SN +AM LL 
Sbjct: 123 QQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGASEASIRNLPPSAIGDPSNLDAMGLLA 182

Query: 182 ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARR--PAAIVDTD--TE 237
            NKG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAGIQAP++ RR  P  + +TD  + 
Sbjct: 183 VNKGKPMEGIVEQVRDGSTVRVYLLPEFQFVQVFVAGIQAPSMGRRAPPDTVAETDNSSN 242

Query: 238 ETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEG 297
           + NG+VSA E  A L SAQRLA S+ S+G+ +  E F ++AK+FTE+RVLNR+VRIVLEG
Sbjct: 243 DHNGEVSA-EPRATLTSAQRLAVSSTSSGEVAP-ETFGVEAKHFTEIRVLNRDVRIVLEG 300

Query: 298 VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKT 357
           VDKF NLIGSV+Y DGETAKDLA+EL+ENGLAKY+EWSANMMEEDAKRRLK A+LQAKKT
Sbjct: 301 VDKFSNLIGSVYYSDGETAKDLALELIENGLAKYVEWSANMMEEDAKRRLKTAELQAKKT 360

Query: 358 RLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIR 417
           RLR+W NYVPP +NSKAIHDQNF GKVVEVVSGDCIIVADDS+PYG+ LAERRVNLSSIR
Sbjct: 361 RLRLWANYVPPPTNSKAIHDQNFMGKVVEVVSGDCIIVADDSVPYGSPLAERRVNLSSIR 420

Query: 418 CPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGT 477
           CPK+GNPR+DEKPA YAREA+EFLRTRLIGRQV +QMEYSRKV                 
Sbjct: 421 CPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVKIQMEYSRKV----------------- 463

Query: 478 KGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPA 537
                    +   GPA        ++R++DFGS+FLLS  KGEG+D SA    N++ Q A
Sbjct: 464 ---------SMVDGPA----TAPPDSRVMDFGSVFLLSSTKGEGEDTSA---KNSSDQQA 507

Query: 538 GVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDL 597
           GVNV ELVVSRG G VI HRDFEERSNYYDALLAAE+RA AGKKG +S+K+PPVMH+ DL
Sbjct: 508 GVNVGELVVSRGFGTVIRHRDFEERSNYYDALLAAESRAIAGKKGIHSAKDPPVMHVTDL 567

Query: 598 TMAPVKKARDFLPFLQRS-RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNE 656
             AP KK+RDFLPFL RS RRIPAVVEYVLSGHRFK+LIPKETCSIAF+FSGVRCPGR+E
Sbjct: 568 LTAPAKKSRDFLPFLHRSGRRIPAVVEYVLSGHRFKLLIPKETCSIAFAFSGVRCPGRDE 627

Query: 657 RYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFG 716
            YS+EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWE+RTN+AV+L+EAGLAK+QTSF 
Sbjct: 628 PYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWEARTNMAVVLVEAGLAKIQTSFS 687

Query: 717 SDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGK 776
           SDRIPD+HLLEQAE+SAK QKLKIWENYVEGEEVSNGAAVE KQKEVLKV+VTE+LGGGK
Sbjct: 688 SDRIPDAHLLEQAERSAKRQKLKIWENYVEGEEVSNGAAVESKQKEVLKVIVTEVLGGGK 747

Query: 777 FYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMV 831
           FYVQ +GDQK  S+QQQLA+LNLQE P+IGAF+PKKG+IVLAQFSADNSWNRAM+
Sbjct: 748 FYVQTIGDQKATSLQQQLAALNLQEVPLIGAFSPKKGDIVLAQFSADNSWNRAMI 802

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539999|ref|XP_002511064.1| ebna2 binding protein P100, putative [Ricinus communis] gi|223550179|gb|EEF51666.1| ebna2 binding protein P100, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224122258|ref|XP_002318790.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] gi|222859463|gb|EEE97010.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query845
TAIR|locus:2159218 985 Tudor2 "TUDOR-SN protein 2" [A 0.542 0.464 0.675 9.6e-284
ZFIN|ZDB-GENE-030131-3124 913 snd1 "staphylococcal nuclease 0.350 0.324 0.382 5.2e-100
RGD|631340 909 Snd1 "staphylococcal nuclease 0.349 0.324 0.380 7.7e-97
UNIPROTKB|Q66X93 909 Snd1 "Staphylococcal nuclease 0.349 0.324 0.380 7.7e-97
MGI|MGI:1929266 910 Snd1 "staphylococcal nuclease 0.349 0.324 0.374 1.3e-96
UNIPROTKB|Q863B3 910 SND1 "Staphylococcal nuclease 0.377 0.350 0.355 1.4e-96
UNIPROTKB|Q7KZF4 910 SND1 "Staphylococcal nuclease 0.349 0.324 0.374 3.4e-96
UNIPROTKB|E2RH91 910 SND1 "Uncharacterized protein" 0.349 0.324 0.374 1.9e-95
FB|FBgn0035121926 Tudor-SN "Tudor-SN" [Drosophil 0.222 0.203 0.411 2.2e-80
DICTYBASE|DDB_G0279659 921 snd1 "Staphylococcus nuclease 0.359 0.330 0.333 9.6e-76
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 9.6e-284, Sum P(2) = 9.6e-284
 Identities = 315/466 (67%), Positives = 374/466 (80%)

Query:     1 MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
             MAT AA    W + RVKAV SGD LVITAL++   GPP EKT+TLSS++ P++ARRGG+D
Sbjct:     1 MATGAATENQWLKGRVKAVTSGDCLVITALTHNRAGPPPEKTITLSSLMAPKMARRGGID 60

Query:    61 EPFAWDSREFLRKLCIGKEVTFRVDYAVPNI-GREFGTVILGDKNVAMLVVSEGWAKVKE 119
             EPFAW+SREFLRKLCIGKEV F+VDY V  I GREFG+V LG++N+A LVV  GWAKV+ 
Sbjct:    61 EPFAWESREFLRKLCIGKEVAFKVDYKVEAIAGREFGSVYLGNENLAKLVVQNGWAKVRR 120

Query:   120 QGSQ-KGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMA 178
              G Q + + SP++AEL +LEEQA+ +G GRWSKVPGAAEASIRNLPPSA+GDS NF+AM 
Sbjct:   121 PGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGNFDAMG 180

Query:   179 LLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXX---XXXXXXXDTD 235
             LL A+KG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAG                 D D
Sbjct:   181 LLAASKGKPMEGIVEQVRDGSTIRVYLLPEFQFVQVFVAGLQAPSMGRRQSTQEAVVDPD 240

Query:   236 -TEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNREVRIV 294
              T  +NGD SA E   PL +AQRL            D PFA++AKYFTE+RVLNR+VRIV
Sbjct:   241 VTATSNGDASA-ETRGPLTTAQRLAASAASSVEVSSD-PFAMEAKYFTELRVLNRDVRIV 298

Query:   295 LEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA 354
             LEGVDKF NLIGSV+Y DG+T KDL +ELVENGLAKY+EWSANM++E+AK++LKA +LQ 
Sbjct:   299 LEGVDKFNNLIGSVYYSDGDTVKDLGLELVENGLAKYVEWSANMLDEEAKKKLKATELQC 358

Query:   355 KKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLS 414
             KK R++MW NYVPP SNSKAIHDQNFTGKVVEVVSGDC++VADDSIP+G+ +AERRV LS
Sbjct:   359 KKNRVKMWANYVPPASNSKAIHDQNFTGKVVEVVSGDCLVVADDSIPFGSPMAERRVCLS 418

Query:   415 SIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKV 460
             SIR PK+GNPR++EKPA YAREA+EFLR +LIG +V VQMEYSRK+
Sbjct:   419 SIRSPKMGNPRREEKPAPYAREAKEFLRQKLIGMEVIVQMEYSRKI 464
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279659 snd1 "Staphylococcus nuclease (SNase-like) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XV0342
hypothetical protein (984 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 5e-24
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-23
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 3e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 9e-20
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 1e-14
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 2e-14
pfam00567118 pfam00567, TUDOR, Tudor domain 4e-13
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 6e-12
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 5e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-10
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 5e-08
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 5e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 6e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 9e-04
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information 
 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG----GLDEPFAWDS 67
            R  V+ V  GD++ +       P      T+ LS I  P  AR        DEPF  ++
Sbjct: 3   IRGVVERVIDGDTIRV--RLPKGP----LITIRLSGIDAPETARPNKGDGTPDEPFGEEA 56

Query: 68  REFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDK-NVAMLVVSEGWAKVKEQGSQKGE 126
           +EFL+KL +GK+V   VD      GR  GTV L    N+A  +V EG AKV        +
Sbjct: 57  KEFLKKLLLGKKVQVEVDSKDRY-GRFLGTVYLNGGNNIAEELVKEGLAKVYR---YADK 112

Query: 127 ASPFLAELLRLEEQAKLQGLGRWS 150
                 ELL  EE AK    G WS
Sbjct: 113 DEYVYDELLEAEEAAKKARKGLWS 136

Length = 137
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 845
KOG2039 875 consensus Transcriptional coactivator p100 [Transc 100.0
smart00318138 SNc Staphylococcal nuclease homologues. 99.93
PRK06518177 hypothetical protein; Provisional 99.92
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.92
KOG2039875 consensus Transcriptional coactivator p100 [Transc 99.92
smart00318138 SNc Staphylococcal nuclease homologues. 99.91
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.9
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.84
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.82
PRK06518177 hypothetical protein; Provisional 99.8
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.76
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.71
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 98.7
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 97.98
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.74
smart0074361 Agenet Tudor-like domain present in plant sequence 96.63
PF06003 264 SMN: Survival motor neuron protein (SMN); InterPro 94.58
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 83.6
KOG3026 262 consensus Splicing factor SPF30 [RNA processing an 81.58
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-67  Score=635.70  Aligned_cols=703  Identities=45%  Similarity=0.729  Sum_probs=597.9

Q ss_pred             CeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCC-CCCChhHHHHHHHHHhHcCCCeEEEEEcccc
Q 003128           10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV   88 (845)
Q Consensus        10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~-~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~   88 (845)
                      ....+.|++|.|||.+.++..  +..+++++.+++|+.+.+|++.+++ +-++||+|++++|+|++++|+.|.|..++-.
T Consensus         3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~   80 (875)
T KOG2039|consen    3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS   80 (875)
T ss_pred             eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence            345689999999999999984  4578889999999999999999774 2379999999999999999999999999744


Q ss_pred             CCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCCCCCcccccccCCCCcC
Q 003128           89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI  168 (845)
Q Consensus        89 d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~r~i~~~~~  168 (845)
                      ..++|.++.+++++.++++.|+..||+.+.....   .+++|...+...|.+|++.++|+|+..    ....+++.++  
T Consensus        81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~--  151 (875)
T KOG2039|consen   81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDS--  151 (875)
T ss_pred             cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeecccc--
Confidence            5679999999999899999999999999888763   237888999999999999999999932    3345777765  


Q ss_pred             CCCchhhHHHhhhhcCCCCcceEEEEecCCC-EEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccc
Q 003128          169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE  247 (845)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~  247 (845)
                          ...++.|++.+.++++.++||+|++|+ +.||++.+++..++++|+|+.||.+..+.           ++      
T Consensus       152 ----~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------  210 (875)
T KOG2039|consen  152 ----ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------  210 (875)
T ss_pred             ----ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC------
Confidence                346788999888999999999999999 68888888788899999999999987531           11      


Q ss_pred             cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEeCCCCChhhHHHHHHhcC
Q 003128          248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG  327 (845)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~~g~V~~~~g~~~~di~~~LL~~G  327 (845)
                                         .+...+||+.+|+.|++.++++|.|.|.+++...+-.++|+|++++|+    ++..|+.+|
T Consensus       211 -------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~  267 (875)
T KOG2039|consen  211 -------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG  267 (875)
T ss_pred             -------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence                               012358999999999999999999999999998877899999999984    999999999


Q ss_pred             cEEEeecccccchHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeCCCCCCCcc
Q 003128          328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL  406 (845)
Q Consensus       328 lA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~  406 (845)
                      ++++.+|+...++.+....++.+|..++..+..+ |++|..+.+++..+..+.+.+.|++++.+||+.+..+.   |.  
T Consensus       268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~--  342 (875)
T KOG2039|consen  268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS--  342 (875)
T ss_pred             hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence            9999999999988888778999999999999999 99999998887766678899999999999999999865   22  


Q ss_pred             ceEEEEeecccCCCCCCCCCCCc--chhhHHHHHHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCCc
Q 003128          407 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK  484 (845)
Q Consensus       407 ~e~~v~Lssi~~P~~~~~~~~~~--~e~~~~eareflR~~~iGk~V~~~vey~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (845)
                       +.++.+++|+.||.+++.+..+  .-||+++|++|||+++||++|.+.++|.++...                .     
T Consensus       343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~-----  400 (875)
T KOG2039|consen  343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N-----  400 (875)
T ss_pred             -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c-----
Confidence             7899999999999555444334  489999999999999999999999999876420                0     


Q ss_pred             cccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-Cccccc
Q 003128          485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS  563 (845)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~e~lv~~G~a~v~~~r-~~~~~s  563 (845)
                                      ..   ...+.+.+                      +.|+|+++.++.+|++++.+|| ++..++
T Consensus       401 ----------------~~---~~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s  439 (875)
T KOG2039|consen  401 ----------------VP---TKVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS  439 (875)
T ss_pred             ----------------cc---cccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence                            00   01112221                      1368999999999999999999 456779


Q ss_pred             HHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcceEE
Q 003128          564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIA  643 (845)
Q Consensus       564 ~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~  643 (845)
                      ..|+.|..+|..|..+++|+|+.+.++.+.+.+++..-..++..++++++++..+..+|+.+++|.++++++|.+.+.++
T Consensus       440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~  519 (875)
T KOG2039|consen  440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQ  519 (875)
T ss_pred             chhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEE
Confidence            99999999999999999999998777566677775322234448999999999999999999999999999999999999


Q ss_pred             EEEeeecCCC-------CCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CcchhHHHHHcCCeeeeecc
Q 003128          644 FSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSF  715 (845)
Q Consensus       644 v~LaGI~~P~-------~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~-~~~i~~~Ll~~GlA~v~~~~  715 (845)
                      +.++|++||+       .+++|+.+|..++..+++++++.+.+..+|+.|+|++..|.+ +.++...++++||+.++  +
T Consensus       520 ~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~  597 (875)
T KOG2039|consen  520 FALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--F  597 (875)
T ss_pred             EeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--h
Confidence            9999999996       488999999999999999999999999999999999999987 88999999999999996  6


Q ss_pred             CCCCCcchHHHHHHHHHHH-hcccCccccccCCccccc--ccccccCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHH
Q 003128          716 GSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSN--GAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQ  791 (845)
Q Consensus       716 ~~~~~~~~~~l~~AE~~AK-~~k~GlW~~~~~~~~~~~--~~~~~~~~g~~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~  791 (845)
                      ..........+..++..|+ ..+.++|..+.++.....  ..........+..+.+++|..+..||+|..+. .+++++|
T Consensus       598 ~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~  677 (875)
T KOG2039|consen  598 AAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIM  677 (875)
T ss_pred             hhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHH
Confidence            5555556677899999999 999999999876633211  11000122345678888888779999999985 8999999


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128          792 QQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPP  837 (845)
Q Consensus       792 ~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~  837 (845)
                      ..|++......+..+.+.|+.|++|+|+|+-||+||||+|+++...
T Consensus       678 ~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~  723 (875)
T KOG2039|consen  678 TNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDP  723 (875)
T ss_pred             HHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccC
Confidence            9999998876677678999999999999999999999999998764

>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
3bdl_A 570 Crystal Structure Of A Truncated Human Tudor-Sn Len 7e-48
2wac_A 218 Extended Tudor Domain Of Drosophila Melanogaster Tu 2e-06
3omg_A 261 Structure Of Human Snd1 Extended Tudor Domain In Co 2e-05
4j1m_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
4iun_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
3mhb_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (479), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 20/315 (6%)
Query: 538 GVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQD 596
           G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + D
Sbjct: 129 GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVAD 188
Query: 597 LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GR 654
           ++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   R
Sbjct: 189 IS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGAR 247
Query: 655 N--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEA 706
           N        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E 
Sbjct: 248 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH 307
Query: 707 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVL 764
            L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + +     
Sbjct: 308 ALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYK 365
Query: 765 KVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSA 822
            V VTEI     FYVQ V  G Q +  + + + +      PV G++ P++GE  +A+F  
Sbjct: 366 PVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-V 423
Query: 823 DNSWNRAMVSELLPP 837
           D  W RA V ++  P
Sbjct: 424 DGEWYRARVEKVESP 438
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 Back     alignment and structure
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
3bdl_A 570 Staphylococcal nuclease domain-containing protein 2e-85
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-42
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-20
3bdl_A570 Staphylococcal nuclease domain-containing protein 3e-11
2hqx_A 246 P100 CO-activator tudor domain; human P100 tudor d 1e-15
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 1e-08
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 6e-04
2wac_A 218 CG7008-PA; unknown function, tudor, beta-barrel, n 5e-15
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-09
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 1e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-05
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 1e-14
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 6e-10
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 3e-07
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 9e-06
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 2e-05
2diq_A110 Tudor and KH domain-containing protein; tudor doma 5e-05
3s6w_A54 Tudor domain-containing protein 3; methylated argi 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  282 bits (723), Expect = 2e-85
 Identities = 162/498 (32%), Positives = 244/498 (48%), Gaps = 92/498 (18%)

Query: 362 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 421
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 422 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 473
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 474 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 533
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 534 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 592
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 593 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 652
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 653 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 702
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 703 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY--VEGEEVSNGAAVEGKQ 760
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y     EEV      + + 
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361

Query: 761 KEVLKVVVTEILGGGKFYVQQVGDQ-KVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 819
                V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421

Query: 820 FSADNSWNRAMVSELLPP 837
           F  D  W RA V ++  P
Sbjct: 422 FV-DGEWYRARVEKVESP 438
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query845
3bdl_A 570 Staphylococcal nuclease domain-containing protein 100.0
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.95
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.88
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.56
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.48
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 99.47
4b9x_A 226 TDRD1, tudor domain-containing protein 1; replicat 99.44
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 99.39
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.31
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.2
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 99.01
2eqk_A85 Tudor domain-containing protein 4; structural geno 98.81
2diq_A110 Tudor and KH domain-containing protein; tudor doma 98.8
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 98.64
3s6w_A54 Tudor domain-containing protein 3; methylated argi 98.49
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 98.47
2d9t_A78 Tudor domain-containing protein 3; structural geno 98.44
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 98.43
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 98.42
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 98.1
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 97.87
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 96.95
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 97.73
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 96.34
3qii_A85 PHD finger protein 20; tudor domain, structural ge 95.49
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 95.27
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 87.87
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 85.65
2eqj_A66 Metal-response element-binding transcription facto 84.35
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-63  Score=584.49  Aligned_cols=395  Identities=39%  Similarity=0.634  Sum_probs=328.9

Q ss_pred             ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCC-CCCCCC-------cchhhHHHHHHHHHhhcCCc
Q 003128          377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKDE-------KPAAYAREAREFLRTRLIGR  448 (845)
Q Consensus       377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~P~~~-~~~~~~-------~~e~~~~eareflR~~~iGk  448 (845)
                      .+.+.|+|++|++||||+|...+      +++++|+|++|+||++. +++++.       .++||++|||||||++|+||
T Consensus        22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk   95 (570)
T 3bdl_A           22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK   95 (570)
T ss_dssp             CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred             CcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence            36799999999999999998532      24899999999999984 222211       57999999999999999999


Q ss_pred             EEEEEEeeeecccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCccccccee-eeeeeEEecCCCCCCCCCchhh
Q 003128          449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV  527 (845)
Q Consensus       449 ~V~~~vey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  527 (845)
                      +|.|.++|.++....              .+                    ..+... +.+++|++              
T Consensus        96 ~V~~~~~~~~~~~~~--------------~~--------------------~~D~yg~R~la~v~~--------------  127 (570)
T 3bdl_A           96 KVNVTVDYIRPASPA--------------TE--------------------TVPAFSERTCATVTI--------------  127 (570)
T ss_dssp             EEEEEEEEEESSCCC--------------SS--------------------CSSSSCCEEEEEEEE--------------
T ss_pred             EEEEEEEeecccccc--------------cc--------------------ccCCCCceEEEEEcc--------------
Confidence            999999998764210              00                    011112 66788887              


Q ss_pred             hccccCCCCCCcchhHHHHhcccceeeecC-CcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCcccccc
Q 003128          528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR  606 (845)
Q Consensus       528 ~~~~~~~~~~g~nv~e~lv~~G~a~v~~~r-~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~  606 (845)
                               +|.||+++||++|||+|.+|| ++++++..|+.|++||..|+++++|+|+.+++++.+++|++ .+.++++
T Consensus       128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~-~~~~~~~  197 (570)
T 3bdl_A          128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQKAK  197 (570)
T ss_dssp             ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECT-TCHHHHH
T ss_pred             ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecC-CchHHHH
Confidence                     468999999999999999987 55567888999999999999999999998776767799997 4788999


Q ss_pred             ccccccccCCccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCC----------CCcccHHHHHHHHHHHhcCceEE
Q 003128          607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE  676 (845)
Q Consensus       607 ~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~----------~~e~~g~EA~~~l~~~ll~r~V~  676 (845)
                      +|++++++.+++.|+|++|+|||||+|++|++++.++|||+|||||+          ..+|||.||+.|++++|++|+|+
T Consensus       198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~  277 (570)
T 3bdl_A          198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE  277 (570)
T ss_dssp             HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence            99999989999999999999999999999988999999999999997          36799999999999999999999


Q ss_pred             EEEEEEcCCCcEEEEEEeCCcchhHHHHHcCCeeeeeccCCCCCcchHHHHHHHHHHHhcccCccccccCCccccc--cc
Q 003128          677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSN--GA  754 (845)
Q Consensus       677 v~v~~~Dk~Gr~~g~v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~~~~--~~  754 (845)
                      |++.+.|+|||++|+||+++.||++.||++|||+++  +...+..+...|.+||++||.+++|||+.+.++..+..  ..
T Consensus       278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~  355 (570)
T 3bdl_A          278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL  355 (570)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred             EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence            999999999999999999999999999999999996  44445667788999999999999999998876532110  00


Q ss_pred             ccccCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEe
Q 003128          755 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSE  833 (845)
Q Consensus       755 ~~~~~~g~~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~  833 (845)
                      ......+++++|+||+|.+|++||||..+. .+|++||++|+.++.+..+.+..+.|++|++|+|+|+ |++||||+|++
T Consensus       356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~  434 (570)
T 3bdl_A          356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK  434 (570)
T ss_dssp             CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred             ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence            101234678999999999999999999974 6799999999998876544444578999999999999 99999999999


Q ss_pred             ecCCC
Q 003128          834 LLPPL  838 (845)
Q Consensus       834 ~~~~~  838 (845)
                      +.++.
T Consensus       435 v~~~~  439 (570)
T 3bdl_A          435 VESPA  439 (570)
T ss_dssp             EEETT
T ss_pred             EcCCC
Confidence            87633
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 845
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 8e-12
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 4e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 3e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.003
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 3e-05
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 1e-04
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 1e-04
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 5e-04
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 13/142 (9%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFL 71
             A +     GD++ +           +  T  L  + TP         E +  ++  F 
Sbjct: 5   EPATLIKAIDGDTVKLM-------YKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFT 57

Query: 72  RKLCIGKEVTFRVDYAVPNIGREFG---TVILGDKNVAMLVVSEGWAKVKEQGSQKGEAS 128
           +K+    +             +       +    K V   +V +G AKV          +
Sbjct: 58  KKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPN---N 114

Query: 129 PFLAELLRLEEQAKLQGLGRWS 150
                L + E QAK + L  WS
Sbjct: 115 THEQLLRKSEAQAKKEKLNIWS 136
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query845
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.94
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.89
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 99.0
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 98.74
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 98.57
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 98.39
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.9e-27  Score=226.56  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=115.3

Q ss_pred             eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHHHHhHcC-CCeEEEEEcc--c
Q 003128           11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRVDY--A   87 (845)
Q Consensus        11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~~~~ep~a~eAre~Lr~ll~-Gk~V~v~~~~--~   87 (845)
                      ...++|++|+|||||+|...+       ...+|||+||||||+.++....+|||++|++||+++|. |+.|.+.++.  .
T Consensus         4 ~~~a~V~~V~DGDT~~v~~~~-------~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~   76 (136)
T d1snoa_           4 KEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQR   76 (136)
T ss_dssp             EEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCS
T ss_pred             ccceEEEEEEcCCEEEEEeCC-------cEEEEEEEEEcccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEecccc
Confidence            357899999999999999863       56899999999999987777789999999999999996 6999998864  3


Q ss_pred             cCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccC
Q 003128           88 VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS  150 (845)
Q Consensus        88 ~d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs  150 (845)
                      .|+|||.+|+||++|.|||++||++|||+++..+.   .+..+.+.|.+||++|+++++||||
T Consensus        77 ~D~~gR~la~v~~~g~~l~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          77 TDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---PNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             BCTTSCEEEEEEETTEEHHHHHHHTTSCEECCCBT---TBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             CCccccceeEEEEecchhHHHHHHCCCEEEeeecC---CChhHHHHHHHHHHHHHHcCCCCCC
Confidence            68899999999999999999999999999987764   2345678899999999999999997
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure