Citrus Sinensis ID: 003129
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZVD5 | 924 | Protein argonaute 4 OS=Ar | yes | no | 0.947 | 0.866 | 0.710 | 0.0 | |
| Q0JF58 | 911 | Protein argonaute 4B OS=O | yes | no | 0.914 | 0.848 | 0.708 | 0.0 | |
| Q9SDG8 | 904 | Protein argonaute 4A OS=O | no | no | 0.891 | 0.832 | 0.718 | 0.0 | |
| Q84VQ0 | 896 | Protein argonaute 9 OS=Ar | no | no | 0.920 | 0.868 | 0.667 | 0.0 | |
| Q6YSJ5 | 883 | Protein argonaute 16 OS=O | no | no | 0.888 | 0.850 | 0.618 | 0.0 | |
| Q3E984 | 850 | Protein argonaute 8 OS=Ar | no | no | 0.860 | 0.855 | 0.588 | 0.0 | |
| Q5NBN9 | 889 | Protein argonaute 15 OS=O | no | no | 0.882 | 0.839 | 0.578 | 0.0 | |
| O48771 | 878 | Protein argonaute 6 OS=Ar | no | no | 0.869 | 0.837 | 0.554 | 0.0 | |
| Q6EU14 | 1082 | Protein argonaute 1A OS=O | no | no | 0.842 | 0.658 | 0.355 | 1e-117 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.852 | 0.712 | 0.368 | 1e-115 |
| >sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/813 (71%), Positives = 690/813 (84%), Gaps = 12/813 (1%)
Query: 1 MDSFEPDGNGA-------RDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPIS 53
MDS +GNGA +G+G ++LPPPPPVIPP+ P RV+ + KK VRVP++
Sbjct: 1 MDS--TNGNGADLESANGANGSGVTEALPPPPPVIPPNVEPVRVKTELAEKKGPVRVPMA 58
Query: 54 RRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQET 113
R+G G+RGQ+I LLTNHFKV+V N++GHF+HYSV++ Y+DGRPV+ KG GRK++D+V +T
Sbjct: 59 RKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQT 118
Query: 114 YNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDR 173
Y+++LDGK+FAYDGEK+LFT G LP NK++F+VVLE++S+ R NGN SP+ + SP+ DR
Sbjct: 119 YHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATRANGNGSPNGNESPSDGDR 178
Query: 174 KRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCL 233
KRLRRP RSK F+VEIS+AAKIP+QA+ANA+RGQESENSQEA RVLDIILRQHAA+QGCL
Sbjct: 179 KRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESENSQEAIRVLDIILRQHAARQGCL 238
Query: 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLI 293
LVRQSFFHNDP N VGG +LGCRGFHSSFRTTQGG+SLN+DV+TTMII+PGPVVDFLI
Sbjct: 239 LVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGGMSLNMDVTTTMIIKPGPVVDFLI 298
Query: 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDD 353
ANQN RDP+SIDW+KAKRTLKNLR+K S QE+KITGLS+K C+EQ F LK++N +++
Sbjct: 299 ANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKITGLSDKPCREQTFELKKRN-PNEN 357
Query: 354 GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413
GE + E+TV DYF + R+IDL+YS DLPCINVGKPKRPTYIPLELC LV LQRYTKALT
Sbjct: 358 GEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYIPLELCALVPLQRYTKALT 417
Query: 414 NLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPR 473
QR++LVEKSRQKPQERM+VLS ALK+S YD EP+LRSCGISIS+NF QVEGRVLPAP+
Sbjct: 418 TFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGISISSNFTQVEGRVLPAPK 477
Query: 474 LKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGIL 533
LK G G + PRNGRWNFNNK+ V+PTKI+RW VVNFSARC++R +V DLIK G KGI
Sbjct: 478 LKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFSARCNVRQVVDDLIKIGGSKGIE 537
Query: 534 IDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRK 593
I PF VFEE QFRR+ P++RVE MF +IQSKLPG PQF+LC+LP++KNSDLYGPWK+K
Sbjct: 538 IASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFILCVLPDKKNSDLYGPWKKK 597
Query: 594 NLADFGIVTQCMAPMRV-NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIIL 652
NL +FGIVTQCMAP R NDQYLTN+LLKINAKLGGLNS+L+VE +P+ ++SKVPTIIL
Sbjct: 598 NLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLSVERTPAFTVISKVPTIIL 657
Query: 653 GMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEG 712
GMDVSHGSPG SD+PSIAAVVSSR WPLIS+YRA+VRTQ K EMI+SL KK + TED+G
Sbjct: 658 GMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSKAEMIESLVKK-NGTEDDG 716
Query: 713 IIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFA 772
II+ELL+DFYTSS KRKPE IIIFRDGVSESQFNQVLN+EL+QIIEACK LD W+PKF
Sbjct: 717 IIKELLVDFYTSSNKRKPEHIIIFRDGVSESQFNQVLNIELDQIIEACKLLDANWNPKFL 776
Query: 773 VIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQH 805
++VAQKNHHTKFFQ SP+NVPPG N + H
Sbjct: 777 LLVAQKNHHTKFFQPTSPENVPPGTIIDNKICH 809
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Involved in transcriptional gene silencing (TGS). Component of the RISC complex that associate with the small interfering RNA (siRNA) pathway involved in direct cytosine methylation at endogenous DNA repeats. Forms a AGO4/NRPE1/siRNA complex in cajal body, facilitating its function in RNA-directed gene silencing of target loci. Required for CpNpG and asymmetric DNA methylation as well as histone H3 'Lys-9' methylation (H3K9me) at SUP and SN1 loci. May be not required for CpG methylation. Required for the production and maintenance of retrotransposon SN1 and Copia and ribosomal 5S 25 nucleotide siRNAs specialized in gene silencing at chromatin level. Involved in de novo methylation of FWA gene and required for the maintenance of RNA-directed DNA methylation (RdDM) triggered by inverted repeat transgenes. Interacts with miRNA miR390 and miR172, targeting respectively TAS3 and AP2 mRNAs, and mediates cleavage of miRNA targets. Associates mainly with small RNAs of 24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO4 function in RNA silencing. Required for resistance to the bacterial pathogen P.syringae. Works independently of the RdDM pathway in mediating resistance to P.syringae. RdDM is involved in viral genome methylation as an epigenetic defense against geminiviruses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 | Back alignment and function description |
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| >sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | ||||||
| 255573685 | 921 | eukaryotic translation initiation factor | 0.946 | 0.868 | 0.838 | 0.0 | |
| 225436053 | 913 | PREDICTED: protein argonaute 4 [Vitis vi | 0.944 | 0.874 | 0.824 | 0.0 | |
| 449463869 | 915 | PREDICTED: protein argonaute 4-like [Cuc | 0.944 | 0.872 | 0.820 | 0.0 | |
| 268376309 | 933 | argonaute 4-like protein [Pelargonium x | 0.943 | 0.854 | 0.831 | 0.0 | |
| 449516890 | 915 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.944 | 0.872 | 0.820 | 0.0 | |
| 409127957 | 909 | AGO4A [Solanum lycopersicum] | 0.913 | 0.849 | 0.802 | 0.0 | |
| 84688912 | 905 | AGO4-2, partial [Nicotiana benthamiana] | 0.928 | 0.867 | 0.799 | 0.0 | |
| 409127959 | 913 | AGO4B [Solanum lycopersicum] | 0.913 | 0.845 | 0.803 | 0.0 | |
| 356554251 | 906 | PREDICTED: protein argonaute 4-like [Gly | 0.900 | 0.839 | 0.813 | 0.0 | |
| 84688910 | 912 | AGO4-1, partial [Nicotiana benthamiana] | 0.914 | 0.847 | 0.800 | 0.0 |
| >gi|255573685|ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223532851|gb|EEF34625.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1376 bits (3562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/811 (83%), Positives = 731/811 (90%), Gaps = 11/811 (1%)
Query: 1 MDSFEPDGNGARDGNG------APDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISR 54
MDSFEPDGNG R+GNG + + LPPPPPV+PPD VP R E EP KKKVVRVPI+R
Sbjct: 1 MDSFEPDGNGLREGNGIHEGNGSQEGLPPPPPVVPPDVVPMRAEP-EPVKKKVVRVPIAR 59
Query: 55 RGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114
RGLGS+GQ+ISLLTNHFKVNV V+ +F+HY VS+SYEDGRPVDGKG GRKVIDRV ETY
Sbjct: 60 RGLGSKGQKISLLTNHFKVNVNKVDDYFFHYCVSLSYEDGRPVDGKGVGRKVIDRVHETY 119
Query: 115 NAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRK 174
++E+ GK FAYDGEKSLFTVG LPRNKLEFTVVLED++SNRNNGNASPD HGSPN DRK
Sbjct: 120 DSEMGGKKFAYDGEKSLFTVGALPRNKLEFTVVLEDVTSNRNNGNASPDGHGSPNEGDRK 179
Query: 175 RLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLL 234
R+RRPY+SKTFKVEISFAAKIP+QAIANALRGQESENSQEA RVLDIILRQHAAKQGCLL
Sbjct: 180 RMRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQEAIRVLDIILRQHAAKQGCLL 239
Query: 235 VRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294
VRQ+FFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA
Sbjct: 240 VRQNFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 299
Query: 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDG 354
NQNVRDPF +DWAKAKRTLKNLRIK SNQEYKITGLSE CKEQ F L QK D+D
Sbjct: 300 NQNVRDPFQLDWAKAKRTLKNLRIKASPSNQEYKITGLSEMPCKEQTFQLNQKGRDDND- 358
Query: 355 EVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTN 414
LE+TVYDYFVN+R I+LRYSGDLPCINVGKPKRPT+IP+ELC LVSLQRYTKAL
Sbjct: 359 ---PLELTVYDYFVNHRRIELRYSGDLPCINVGKPKRPTFIPIELCSLVSLQRYTKALNT 415
Query: 415 LQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRL 474
LQRASLVEKSRQKPQERMS LSNALK S YD EPMLRSCG+SIST+F QV+GR L AP+L
Sbjct: 416 LQRASLVEKSRQKPQERMSTLSNALKSSNYDAEPMLRSCGVSISTSFVQVDGRQLQAPKL 475
Query: 475 KFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILI 534
K GNGEDF PRNGRWNFNNKKLV P+KIERWAVVNFSARCDIR+LVRDL KC EMKGI I
Sbjct: 476 KVGNGEDFFPRNGRWNFNNKKLVDPSKIERWAVVNFSARCDIRNLVRDLTKCAEMKGIPI 535
Query: 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594
+ PFDVFEE+PQFRR+ P VRVEKMFD IQSKLPGAP+FLLCLLPERKNSDLYGPWK+KN
Sbjct: 536 EPPFDVFEENPQFRRAPPTVRVEKMFDSIQSKLPGAPKFLLCLLPERKNSDLYGPWKKKN 595
Query: 595 LADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
L+DFGIVTQC+AP RVNDQYLTNVLLKINAKLGGLNS+LAVEHSPSIP+VSKVPTII+GM
Sbjct: 596 LSDFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSMLAVEHSPSIPLVSKVPTIIIGM 655
Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGII 714
DVSHGSPGHSD+PSIAAVVSSR WPLISRYRA VRTQSPKVEMIDSL+K VSDTEDEG++
Sbjct: 656 DVSHGSPGHSDVPSIAAVVSSRQWPLISRYRACVRTQSPKVEMIDSLYKPVSDTEDEGMM 715
Query: 715 RELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVI 774
RELLLDFY+SSGKRKPEQIIIFRDGVSESQFNQVLN+ELNQIIEACK LDEKW+PKF VI
Sbjct: 716 RELLLDFYSSSGKRKPEQIIIFRDGVSESQFNQVLNIELNQIIEACKHLDEKWNPKFVVI 775
Query: 775 VAQKNHHTKFFQSGSPDNVPPGEPFHNFVQH 805
+AQKNHHTKFFQ G PDNVPPG N V H
Sbjct: 776 IAQKNHHTKFFQPGLPDNVPPGTVIDNKVCH 806
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|268376309|gb|ACZ04920.1| argonaute 4-like protein [Pelargonium x hortorum] | Back alignment and taxonomy information |
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| >gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|409127957|gb|AFV15381.1| AGO4A [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|84688912|gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|409127959|gb|AFV15382.1| AGO4B [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|356554251|ref|XP_003545462.1| PREDICTED: protein argonaute 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|84688910|gb|ABC61504.1| AGO4-1, partial [Nicotiana benthamiana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | ||||||
| TAIR|locus:2059258 | 924 | AGO4 "ARGONAUTE 4" [Arabidopsi | 0.908 | 0.831 | 0.723 | 5.1e-312 | |
| TAIR|locus:2179008 | 896 | AGO9 "ARGONAUTE 9" [Arabidopsi | 0.894 | 0.843 | 0.678 | 5.3e-285 | |
| TAIR|locus:2147072 | 850 | AT5G21030 [Arabidopsis thalian | 0.902 | 0.897 | 0.573 | 4e-232 | |
| TAIR|locus:2059370 | 878 | AGO6 "ARGONAUTE 6" [Arabidopsi | 0.897 | 0.863 | 0.551 | 1.7e-226 | |
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.702 | 0.595 | 0.359 | 1.5e-110 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.706 | 0.564 | 0.356 | 2.2e-105 | |
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.704 | 0.602 | 0.360 | 1.9e-104 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.701 | 0.605 | 0.347 | 2.8e-103 | |
| UNIPROTKB|F1LUQ5 | 860 | Eif2c4 "Protein Eif2c4" [Rattu | 0.734 | 0.722 | 0.327 | 3e-89 | |
| UNIPROTKB|Q4KLV6 | 884 | eif2c4 "Protein argonaute-4" [ | 0.734 | 0.702 | 0.330 | 1.3e-88 |
| TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2993 (1058.6 bits), Expect = 5.1e-312, P = 5.1e-312
Identities = 558/771 (72%), Positives = 664/771 (86%)
Query: 36 RVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGR 95
RV+ + KK VRVP++R+G G+RGQ+I LLTNHFKV+V N++GHF+HYSV++ Y+DGR
Sbjct: 41 RVKTELAEKKGPVRVPMARKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGR 100
Query: 96 PVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNR 155
PV+ KG GRK++D+V +TY+++LDGK+FAYDGEK+LFT G LP NK++F+VVLE++S+ R
Sbjct: 101 PVEQKGVGRKILDKVHQTYHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATR 160
Query: 156 NNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215
NGN SP+ + SP+ DRKRLRRP RSK F+VEIS+AAKIP+QA+ANA+RGQESENSQEA
Sbjct: 161 ANGNGSPNGNESPSDGDRKRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESENSQEA 220
Query: 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNI 275
RVLDIILRQHAA+QGCLLVRQSFFHNDP N VGG +LGCRGFHSSFRTTQGG+SLN+
Sbjct: 221 IRVLDIILRQHAARQGCLLVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGGMSLNM 280
Query: 276 DVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEK 335
DV+TTMII+PGPVVDFLIANQN RDP+SIDW+KAKRTLKNLR+K S QE+KITGLS+K
Sbjct: 281 DVTTTMIIKPGPVVDFLIANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKITGLSDK 340
Query: 336 LCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYI 395
C+EQ F LK++N +++GE + E+TV DYF + R+IDL+YS DLPCINVGKPKRPTYI
Sbjct: 341 PCREQTFELKKRN-PNENGEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYI 399
Query: 396 PLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGI 455
PLELC LV LQRYTKALT QR++LVEKSRQKPQERM+VLS ALK+S YD EP+LRSCGI
Sbjct: 400 PLELCALVPLQRYTKALTTFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGI 459
Query: 456 SISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCD 515
SIS+NF QVEGRVLPAP+LK G G + PRNGRWNFNNK+ V+PTKI+RW VVNFSARC+
Sbjct: 460 SISSNFTQVEGRVLPAPKLKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFSARCN 519
Query: 516 IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLL 575
+R +V DLIK G KGI I PF VFEE QFRR+ P++RVE MF +IQSKLPG PQF+L
Sbjct: 520 VRQVVDDLIKIGGSKGIEIASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFIL 579
Query: 576 CLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-NDQYLTNVLLKINAKLGGLNSLLA 634
C+LP++KNSDLYGPWK+KNL +FGIVTQCMAP R NDQYLTN+LLKINAKLGGLNS+L+
Sbjct: 580 CVLPDKKNSDLYGPWKKKNLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLS 639
Query: 635 VEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPK 694
VE +P+ ++SKVPTIILGMDVSHGSPG SD+PSIAAVVSSR WPLIS+YRA+VRTQ K
Sbjct: 640 VERTPAFTVISKVPTIILGMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSK 699
Query: 695 VEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELN 754
EMI+SL KK + TED+GII+ELL+DFYTSS KRKPE IIIFRDGVSESQFNQVLN+EL+
Sbjct: 700 AEMIESLVKK-NGTEDDGIIKELLVDFYTSSNKRKPEHIIIFRDGVSESQFNQVLNIELD 758
Query: 755 QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQH 805
QIIEACK LD W+PKF ++VAQKNHHTKFFQ SP+NVPPG N + H
Sbjct: 759 QIIEACKLLDANWNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICH 809
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| TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4KLV6 eif2c4 "Protein argonaute-4" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZVD5 | AGO4_ARATH | No assigned EC number | 0.7109 | 0.9479 | 0.8668 | yes | no |
| Q9SDG8 | AGO4A_ORYSJ | No assigned EC number | 0.7186 | 0.8911 | 0.8329 | no | no |
| Q0JF58 | AGO4B_ORYSJ | No assigned EC number | 0.7082 | 0.9147 | 0.8485 | yes | no |
| Q9HCK5 | AGO4_HUMAN | No assigned EC number | 0.3078 | 0.8319 | 0.8164 | yes | no |
| Q8CJF8 | AGO4_MOUSE | No assigned EC number | 0.3066 | 0.8319 | 0.8164 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017422001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (916 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 845 | |||
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 0.0 | |
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 1e-121 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 9e-65 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 1e-63 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 6e-51 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 5e-37 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 7e-29 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 3e-28 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 3e-20 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 1e-05 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 8e-04 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
Score = 1606 bits (4160), Expect = 0.0
Identities = 651/788 (82%), Positives = 716/788 (90%), Gaps = 3/788 (0%)
Query: 18 PDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTN 77
D+LPPPPPV+PP+ VP ++E K R+P++RRG GS+GQ+I LLTNHFKV+V N
Sbjct: 1 KDALPPPPPVVPPNVVPIKLEP-TKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNN 59
Query: 78 VEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPL 137
+GHF+HYSVS++YEDGRPVDGKG GRKVID+VQETY+++L GKDFAYDGEKSLFTVG L
Sbjct: 60 PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGAL 119
Query: 138 PRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPI 197
P+NKLEFTVVLED+SSNRNNGN SP +GSPNG DRKR RRPY+SKTFKVEISFAAKIP+
Sbjct: 120 PQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPM 179
Query: 198 QAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGC 257
QAIANALRGQESENSQ+A RVLDIILRQHAAKQGCLLVRQSFFHNDPKNF D+GGGVLGC
Sbjct: 180 QAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGC 239
Query: 258 RGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLR 317
RGFHSSFRTTQGGLSLNIDVSTTMI+QPGPVVDFLIANQNVRDPF IDW+KAKR LKNLR
Sbjct: 240 RGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLR 299
Query: 318 IKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRY 377
+K SNQEYKITGLSEK CKEQ FSLKQ+N + EV+ +EITVYDYFV +R I+LRY
Sbjct: 300 VKVSPSNQEYKITGLSEKPCKEQTFSLKQRN--GNGNEVETVEITVYDYFVKHRGIELRY 357
Query: 378 SGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN 437
SGDLPCINVGKPKRPTY P+ELC LVSLQRYTKAL+ LQR+SLVEKSRQKPQERM VL++
Sbjct: 358 SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417
Query: 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497
ALK S YD +PMLRSCGISIS+ F QVEGRVLPAP+LK GNGEDF PRNGRWNFNNKKLV
Sbjct: 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477
Query: 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVE 557
+PTKIERWAVVNFSARCDIR LVRDLIKCGEMKGI I+ PFDVFEE+PQFRR+ P VRVE
Sbjct: 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVE 537
Query: 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTN 617
KMF++IQSKLPG PQFLLC+LPERKNSD+YGPWK+KNL++FGIVTQC+AP RVNDQYLTN
Sbjct: 538 KMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTN 597
Query: 618 VLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRH 677
VLLKINAKLGGLNSLLA+EHSPSIP+VSKVPTIILGMDVSHGSPG SD+PSIAAVVSSR
Sbjct: 598 VLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQ 657
Query: 678 WPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737
WPLISRYRA+VRTQSPKVEMIDSLFK V D +D+GIIRELLLDFYTSSGKRKPEQIIIFR
Sbjct: 658 WPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717
Query: 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGE 797
DGVSESQFNQVLN+EL+QIIEACKFLDE WSPKF VIVAQKNHHTKFFQ+GSPDNVPPG
Sbjct: 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGT 777
Query: 798 PFHNFVQH 805
N + H
Sbjct: 778 VVDNKICH 785
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Length = 900 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.88 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.78 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.78 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.76 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.47 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.41 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.51 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 96.59 | |
| PF08459 | 155 | UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I | 90.37 | |
| TIGR00194 | 574 | uvrC excinuclease ABC, C subunit. This family cons | 83.29 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-160 Score=1448.60 Aligned_cols=809 Identities=81% Similarity=1.282 Sum_probs=721.7
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCC
Q 003129 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (845)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~ 98 (845)
+++||+||.+|+++++...+..+ ....+++.+++||||||.|++|+|.||||+|.+..++..+|||+|+|.++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988765322 22566778899999999999999999999999765678899999999876556777
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCceEeeCCcceEecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccC
Q 003129 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (845)
Q Consensus 99 ~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~k~Lfs~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 178 (845)
+++++++|+.++++++..++.|..+||||+++|||+++||.+..++.|.+.++...++..+++|+++++|++++++|.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78899999999998876667777899999999999999998777888888754332222346666677787777777777
Q ss_pred CCCCceEEEEEEeecccCHHHHHHHHcCCCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEee
Q 003129 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (845)
Q Consensus 179 ~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~ 258 (845)
..+.+.|+|+|+++++|++++|.++|.|...++..+++|+||||||+.++..++..+|++||.++.....++++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77889999999999999999999999998777889999999999999998777888999999876555567999999999
Q ss_pred cceeEEEEeCCeeEEEEeccccccccCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCccccc
Q 003129 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (845)
Q Consensus 259 Gf~~Svr~~~~gl~LniDvs~~~F~~~~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~ 338 (845)
||++|||+++++|+||||+++++|++++||+|+|.+..+.++....+|.++.++|+|++|.++|+++.|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999877665555567889999999999999999999999999999999
Q ss_pred ccceecccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCC-CCcEEEcCCCCCCceecccceEEcCCccccccCCHHHH
Q 003129 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR 417 (845)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p-~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~ 417 (845)
+.+|.++++++ ...++.+++|||+|||+++||++|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+
T Consensus 321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~ 397 (900)
T PLN03202 321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR 397 (900)
T ss_pred ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence 99998765321 01122245899999999999999999 6 99999999988999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCcccCCCCCccccCCceee
Q 003129 418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497 (845)
Q Consensus 418 ~~li~~s~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~ 497 (845)
++|+++++.+|++|.+.|.++++.++++.+++|++|||+|+++|++|+||||+||+|.||++..+.|++|+||+++++|+
T Consensus 398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~ 477 (900)
T PLN03202 398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477 (900)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence 99999999999999999999999999988999999999999999999999999999999988777788999999999999
Q ss_pred cCCccceEEEEEeCCcccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEE
Q 003129 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL 577 (845)
Q Consensus 498 ~p~~i~~Wavv~~~~~~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~I 577 (845)
+|+++++|+|++|+.+++++.|++.|.+.|+.+||.+..|..+...++++......++++.+++++++.+...++|+|||
T Consensus 478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI 557 (900)
T PLN03202 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI 557 (900)
T ss_pred CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999988767899999999999999999999887654444444334445789999999998877679999999
Q ss_pred cCCCCCCcchHHHHHHhhcccCceeeEeeccccChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeee
Q 003129 578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS 657 (845)
Q Consensus 578 lp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVs 657 (845)
||++++.++|+.||++||+++||+||||..++.++||+.|||||||+||||+||.|.++.+..+|++.+.+|||||+||+
T Consensus 558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt 637 (900)
T PLN03202 558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS 637 (900)
T ss_pred EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence 99845789999999999999999999998878899999999999999999999999876555688888889999999999
Q ss_pred cCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 003129 658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737 (845)
Q Consensus 658 H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyR 737 (845)
||++++.+.|||||+|||+|++.+++|.+.+++|.+++|+|++|+....++.+++|++++|+.||+.+++.+|++|||||
T Consensus 638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyR 717 (900)
T PLN03202 638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717 (900)
T ss_pred cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEe
Confidence 99998756799999999999767999999999999999999998765555567899999999999987789999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCCCCCCCCceeeCcccCCccccccccchh
Q 003129 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQHKSITALDITFEN 817 (845)
Q Consensus 738 DGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~ppGTVVD~~It~P~~~~~~~~~dF 817 (845)
||||||||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+..+||+||||||++||||.+ |||
T Consensus 718 DGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~------~dF 791 (900)
T PLN03202 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRN------NDF 791 (900)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCc------ceE
Confidence 99999999999999999999999999889999999999999999999998777999999999999999987 688
Q ss_pred HHHhhHHHhhccccccccccccccccc
Q 003129 818 FLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 818 fl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
| |+||.++|||||||||+||
T Consensus 792 y-------L~Sh~~~qGTarPthY~Vl 811 (900)
T PLN03202 792 Y-------MCAHAGMIGTTRPTHYHVL 811 (900)
T ss_pred E-------EecccccccCCcCceEEEE
Confidence 8 9999999999999999998
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
| >TIGR00194 uvrC excinuclease ABC, C subunit | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 845 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 3e-84 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 6e-84 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 5e-19 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 2e-15 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 3e-14 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 4e-14 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 7e-14 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 3e-12 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 3e-10 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 1e-09 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 6e-09 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 7e-09 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 6e-08 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 3e-05 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 8e-05 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 556 bits (1433), Expect = 0.0
Identities = 224/808 (27%), Positives = 365/808 (45%), Gaps = 100/808 (12%)
Query: 16 GAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNV 75
GA S P + PP P P + + P R G+ G+ I L N F++++
Sbjct: 1 GAMYS-GAGPALAPPAPPP-------PIQGYAFKPP-PRPDFGTSGRTIKLQANFFEMDI 51
Query: 76 TNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYDGEKSLFTV 134
YHY + + E + R++++ + + + + + +DG K+L+T
Sbjct: 52 PK--IDIYHYELDIKPE----KCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTA 105
Query: 135 GPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAK 194
PLP + + + + L + + FKV I + +
Sbjct: 106 MPLPIGRDKVELEVT--------------------------LPGEGKDRIFKVSIKWVSC 139
Query: 195 IPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGV 254
+ +QA+ +AL G+ E + LD+++R + + V +SFF +GGG
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR-YTPVGRSFFTASEGCSNPLGGGR 198
Query: 255 LGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSI-------DWA 307
GFH S R + + LNIDVS T + PV++F+ + +
Sbjct: 199 EVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRV 258
Query: 308 KAKRTLKNLRIKTI---TSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVY 364
K + +K L+++ ++Y++ ++ + Q F L Q +E TV
Sbjct: 259 KFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPL-------QQESGQTVECTVA 311
Query: 365 DYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKS 424
YF + + LRY LPC+ VG+ ++ TY+PLE+C +V+ QR K LT+ Q ++++ +
Sbjct: 312 QYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRAT 370
Query: 425 RQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDF-- 482
+ +R +S ++ + ++ +P +R GI + V GRVL P + +G
Sbjct: 371 ARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIA 430
Query: 483 SPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQP 537
+P G W+ NK+ +I+ WA+ F+ + ++S L K G+ I
Sbjct: 431 TPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQ 490
Query: 538 FDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLAD 597
+ + VE MF +++ G Q ++ +LP + +Y KR
Sbjct: 491 P------CFCKYAQGADSVEPMFRHLKNTYAG-LQLVVVILPGKT--PVYAEVKRVGDTV 541
Query: 598 FGIVTQCMAP---MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
G+ TQC+ R Q L+N+ LKIN KLGG+N++L P V + P I LG
Sbjct: 542 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGA 598
Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGII 714
DV+H G PSIAAVV S +RY A VR Q + E+I L ++
Sbjct: 599 DVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL---------AAMV 648
Query: 715 RELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVI 774
RELL+ FY S+ KP +II +RDGVSE QF QVL+ EL I EAC L++ + P I
Sbjct: 649 RELLIQFYKSTR-FKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFI 707
Query: 775 VAQKNHHTKFF------QSGSPDNVPPG 796
V QK HHT+ F + G N+P G
Sbjct: 708 VVQKRHHTRLFCTDKNERVGKSGNIPAG 735
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.93 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.92 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.91 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.91 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.91 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.9 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.88 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.88 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.82 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.82 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.64 | |
| 2nrr_A | 159 | Uvrabc system protein C; UVRC, endonuclase, NER, h | 83.76 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-148 Score=1347.19 Aligned_cols=719 Identities=31% Similarity=0.551 Sum_probs=623.6
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHHhhh-cCCCceEee
Q 003129 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYD 126 (845)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~-~~~~~~~yD 126 (845)
...++.|||+||.|++|.|+||||+|++. ++.+|||||+|.| +.++++++|+|++++.+++..+ |++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred cccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 45678999999999999999999999874 5689999999965 4556789999999999887434 556678999
Q ss_pred CCcceEecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcC
Q 003129 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (845)
Q Consensus 127 G~k~Lfs~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g 206 (845)
|+++|||+++||.++.++++.+... + ..+.++|+|+|+++++|++++|.++|+|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~------------~--------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP------------G--------------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CcceEEECCcCCCCCcceEEEEecC------------C--------------CCCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence 9999999999998654444333210 0 0135789999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEeecceeEEEEeCCeeEEEEeccccccccCc
Q 003129 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (845)
Q Consensus 207 ~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~ 286 (845)
...+.++++||+||||||+.++ ..+..+||+||++..+...++|+|+|+|+||++|||+++++|+||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCcHHHHHHHHHHHHhhcc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCC
Confidence 9887889999999999999654 568899999998765544578999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCC-------CchhHHHHHHHhcCcEEEEee---cCceEEEeccCcccccccceecccCCCCCCCCCc
Q 003129 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (845)
Q Consensus 287 ~v~d~l~~~~~~~~~-------~~~d~~~~~~~Lkgl~V~~~~---~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~ 356 (845)
||+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|.|+|.||++.++.+++|.++..+ +
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-------g 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-------G 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-------S
T ss_pred cHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC-------C
Confidence 999999886554332 233578899999999999999 56899999999999999999865322 1
Q ss_pred cceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccccCCHHHHHHHHHHhcCChHHHHHHHH
Q 003129 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (845)
Q Consensus 357 ~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~~P~eR~~~i~ 436 (845)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||+|+++|+++|+++|+++++.+|.+|.+.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHH
Confidence 235899999999999999999 9999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCc--ccCCCCCccccCCceeecCCccceEEEEEeCCc-
Q 003129 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (845)
Q Consensus 437 ~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~--~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~~~~- 513 (845)
++++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|+|++++++|++|+++++|++++|+..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcc
Confidence 99999988888999999999999999999999999999999753 257889999999999999999999999998642
Q ss_pred -c---cHHHHHHHHHHHhhhcCCccCC-CccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchH
Q 003129 514 -C---DIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (845)
Q Consensus 514 -~---~~~~f~~~L~~~~~~~G~~i~~-P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~ 588 (845)
+ .++.|++.|.+.|+.+||.+.. |..+... ...++++.+++.+++..+ +++|||||||+ + .+.|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-------~~~~~~~~~~~~l~~~~~-~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-------QGADSVEPMFRHLKNTYA-GLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-------CSSSSHHHHHHHHHHHST-TCCEEEEEESS-S-CTHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEec-------CchHHHHHHHHHHHhhcC-CCcEEEEEeCC-C-ccHHH
Confidence 2 5899999999999999999974 5332211 113467888999887653 68999999997 3 68999
Q ss_pred HHHHHhhcccCceeeEeecc---ccChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCC
Q 003129 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (845)
Q Consensus 589 ~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~ 665 (845)
.||++||+++||+||||..+ +.++||+.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++...
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence 99999999999999999975 4579999999999999999999988642 24555678999999999999988667
Q ss_pred CCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHH
Q 003129 666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQF 745 (845)
Q Consensus 666 ~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf 745 (845)
.|||||||||+|+ ..++|.+.+++|.+++|+|++|. +|++++|.+|++.+ +.+|++|||||||||||||
T Consensus 610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~ 678 (861)
T 4f3t_A 610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQF 678 (861)
T ss_dssp CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGH
T ss_pred CceEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHHh-CCCCceEEEEecCCChHHH
Confidence 8999999999997 79999999999999999999864 69999999999876 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCC------CCCCCCCceeeCcccCCccccccccchhHH
Q 003129 746 NQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGEPFHNFVQHKSITALDITFENFL 819 (845)
Q Consensus 746 ~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~------~~N~ppGTVVD~~It~P~~~~~~~~~dFfl 819 (845)
.+|+++|+++|++||++++.+|+|+||||||+||||||||+.+. .+||+||||||++||||.+ ||||
T Consensus 679 ~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~------~dFy- 751 (861)
T 4f3t_A 679 QQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTE------FDFY- 751 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSB------CEEE-
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCC------CEEE-
Confidence 99999999999999999998999999999999999999999742 4899999999999999987 6888
Q ss_pred HhhHHHhhccccccccccccccccc
Q 003129 820 FMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 820 ~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+||.++|||||||||+||
T Consensus 752 ------L~Sh~~~qGTarPthY~Vl 770 (861)
T 4f3t_A 752 ------LCSHAGIQGTSRPSHYHVL 770 (861)
T ss_dssp ------EECSCCCSSCCCCEEEEEE
T ss_pred ------EEEEecccccccCceEEEE
Confidence 9999999999999999998
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
| >2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 845 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 1e-47 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 4e-44 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 2e-33 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 5e-29 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 1e-20 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 1e-05 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 172 bits (437), Expect = 1e-47
Identities = 39/300 (13%), Positives = 92/300 (30%), Gaps = 53/300 (17%)
Query: 515 DIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQF 573
+++LI + KGI + + + + ++ V
Sbjct: 54 RKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKIK--------DVDL 105
Query: 574 LLCLLPERKNSD------LYGPWKRKNLADFGIVTQCMAPMRVNDQ----YLTNVLLKIN 623
++ L E D LY KR+ L I +Q + + ++ L NV ++
Sbjct: 106 VIVFLEEYPKVDPYKSFLLYDFVKRE-LLKKMIPSQVILNRTLKNENLKFVLLNVAEQVL 164
Query: 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISR 683
AK G + + + +G+D+S + + ++A + R
Sbjct: 165 AKTGNIPY--------KLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVR 216
Query: 684 YRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 743
Y + ++ + + G +K +I++ RDG
Sbjct: 217 YY-LTSYPAFGEKLTEKAIGD-------------VFSLLEKLGFKKGSKIVVHRDGR--- 259
Query: 744 QFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFV 803
+ E+ + + + ++ K ++ +FF + + + V
Sbjct: 260 ----LYRDEVAAFKKYGE----LYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSV 311
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.9 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.87 | |
| d1b0aa2 | 121 | Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc | 82.73 |
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Hypothetical protein AF1318 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.9e-45 Score=394.84 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=194.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccccC----hhHHHHHHHHHHhcCCCcee
Q 003129 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVN----DQYLTNVLLKINAKLGGLNS 631 (845)
Q Consensus 556 ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~----~q~~~Ni~lKINaKLGG~n~ 631 (845)
+...++...+ .++++++||||+ +++++|..||++++ .||+||||..++++ .++++||++||||||||+||
T Consensus 4 ~~~~~~~~~~---~g~~~v~~ilp~-~~~~~Y~~iK~~l~--~gIptQ~v~~~tl~~~~~~~~~~nI~lqin~KlGG~pw 77 (316)
T d1w9ha1 4 IKSQVDNAID---TGVDGIMLVLPE-YNTPLYYKLKSYLI--NSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPW 77 (316)
T ss_dssp HHHHHHHHHH---HCCSEEEEEECS-SCHHHHHHHHHHHH--TTSCEEEEETTCC-----HHHHHHHHHHHHHHTTCBCC
T ss_pred HHHHHHHHHh---cCCCEEEEEeCC-CCchHHHHHHHHhc--cCCCCEEEehhhccCcchHHHHHHHHHHHHHHhCCcce
Confidence 3444444444 368999999999 78999999999865 59999999987652 34679999999999999999
Q ss_pred eccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchH
Q 003129 632 LLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDE 711 (845)
Q Consensus 632 ~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~ 711 (845)
.++.. .+. .+|||||+||+|+. .+|++|+++++|. +.++|.+.+..|..++|++++|.
T Consensus 78 ~l~~~----~~~---~~~miIG~dv~h~~-----~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~e~~~~l~--------- 135 (316)
T d1w9ha1 78 ILNVD----PEK---GSDIIIGTGATRID-----NVNLFCFAMVFKK-DGTMLWNEISPIVTSSEYLTYLK--------- 135 (316)
T ss_dssp EECCC----GGG---TTCEEEEEEEEESS-----SSEEEEEEEEEET-TSCEEEEEECCCEEGGGHHHHHH---------
T ss_pred EeccC----CCC---CCeEEEEEEEecCC-----CCeeeEEEEEEcC-CCCEEEEEEEEecCCCchHHHHH---------
Confidence 99642 122 57999999999963 3688999999986 78999999999999999988764
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCC-
Q 003129 712 GIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP- 790 (845)
Q Consensus 712 ~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~- 790 (845)
.+++++|..|++.+++.+|++||+||||+++|++++.++.|.++|++++.....++.|+|+||+|+||||+|||+.+..
T Consensus 136 ~~~~~~l~~~~~~~~~~~p~~Ii~~r~g~~~~~~~~e~~~~~~ai~~~~~~~~~~~~pk~~~I~V~Kr~~~R~f~~~~~~ 215 (316)
T d1w9ha1 136 STIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNR 215 (316)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEC------
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEECCcccchHHHHHHHHHHHHHHHHHhhccCCCccEEEEEEEeecccccccccccC
Confidence 5999999999988878899999999999999998887777777777777777778999999999999999999987653
Q ss_pred CCCCCCceeeCcccCCccccccccchhHHHhhHHHhhcccccccc-ccccccccc
Q 003129 791 DNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVIQET-MTSTFVPML 844 (845)
Q Consensus 791 ~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGt-a~pt~Y~vl 844 (845)
.||+||||||. +++... +||+. +++..|...+|+ ++||||.|+
T Consensus 216 ~np~~GTvVd~--~~~~~~------~~~~~---~~~~~q~~~~~~~~~P~~y~v~ 259 (316)
T d1w9ha1 216 FHPYEGTKVKL--SSKRYL------LTLLQ---PYLKRNGLEMVTPIKPLSVEIV 259 (316)
T ss_dssp -CCSSSCEEES--SSSEEE------ECCBC---TTC-------CEEECCEEEEEE
T ss_pred cCCCCCCEEec--CCCeee------eEecc---eeEeeeccCCCCCCcceEEEEE
Confidence 79999999994 455443 22311 124444444544 899999987
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|