Citrus Sinensis ID: 003135

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-----

MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHcHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccc

ccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHccccccHHHcccHHHHHHcHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccHEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHcccccccHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEEHHHHHEcccHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccccccccEEcccHHHccHHHHHHHHHHHHccHHHEcccccHHHHHHHHHHccHHHHHEccc

milgslsfddgntvkdnllrfktgkrgLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVletgpgwrlvsphfsvlldkaifpalvlnekdisEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGvisvskgppmgtpsncssvsskrkkgekskrnsmrstmgellvlpflsrfpipcdanashsriqKDYFGVLMAYGGLQEFLREQKSEFTANlvrsrvlplysvsVCLPYLVASANWILGELasclpedisADVYSSLLKALQMldkgdtscypvrASAAGAIVGLlendymppewypLLQVIVGRIGYEDEENSILFELLSSVVGaanenvadhIPYIVSSLVAAISkhmhpssepwpQVVERGFAALALMAQSWENFLREEVEldqssgkweSGQAAIAKAFSALLQQAWLThiqplecevsappsciddssMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWhaweetedlsvFDCIKEIVNLHSKYELKNFIvrqmppppappvppqsiIEGIGAFLSEAILqypsatwracscvhtllhvpkysfetegvkqSLTISFSCAAFSRfraiqskpsslwkPVVLAISSCYLCYPAVVEGILkkdedggfaLWGSALAFLcsssleprlslESEIKLAVLTLAKVVERLLglgnpgsslLQDCYASLMEAAVQLKEvqedeendegddeeaedkeddneesedddedsegdeceeTEEEFLERYAKAAVNLenntlveegdvedqehdielgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

milgslsfddgntvkdnllrfktgkrglLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVisvskgppmgtpsncssvsskrkkgekskrnsmrstmGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKevqedeendegddeeaedkeddneesedddedsegdeCEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIelgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCssvsskrkkgekskRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMppppappvppQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCsssleprlsleseIKLAVLTLAKVVERllglgnpgssllQDCYASLMEAAVQLKEVQedeendegddeeaedkeddneesedddedsegdeceeteeeFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

***********NTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISV***********************************ELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH***EPWPQVVERGFAALALMAQSWENFLREEVELD***GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV***************IIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV***************************************************YAKAAVNL*****************IELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLL**

MILGS*********K**LLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVS**********RNSMRSTMGELLVLPFLSRFPI**********IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHP********VERGFAALALMAQS******************ESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVR*M***********SIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLG*PGSSLLQDCYASLMEAAV****************************************CEETEEEFLERYAKAAVN****************HDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPP*************************RSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS*********WPQVVERGFAALALMAQSWENFLREEV***********GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLK********************************************FLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

*ILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPP**************************STMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR*****DQSSGKWESGQAAIAKAFSALLQQAWLTHIQP*ECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQE*********************************CEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQxxxxxxxxxxxxxxxxxxxxxEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		845
356565000		1104	PREDICTED: uncharacterized protein LOC10	0.982	0.751	0.622	0.0
449441658		1085	PREDICTED: uncharacterized protein LOC10	0.986	0.768	0.606	0.0
356521695		1094	PREDICTED: uncharacterized protein LOC10	0.982	0.758	0.612	0.0
255556524		965	protein transporter, putative [Ricinus c	0.803	0.703	0.688	0.0
297834642		1091	protein transporter [Arabidopsis lyrata	0.983	0.761	0.564	0.0
145338625		1090	armadillo/beta-catenin-like repeats-cont	0.982	0.761	0.559	0.0
110738031		1090	hypothetical protein [Arabidopsis thalia	0.982	0.761	0.559	0.0
334185410		1093	armadillo/beta-catenin-like repeats-cont	0.982	0.759	0.556	0.0
357155759		1092	PREDICTED: uncharacterized protein LOC10	0.964	0.746	0.528	0.0
326530652		1098	predicted protein [Hordeum vulgare subsp	0.958	0.737	0.502	0.0

>gi\|356565000\|ref\|XP_003550733.1\| PREDICTED: uncharacterized protein LOC100782006 [Glycine max]	Back alignment and taxonomy information

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/843 (62%), Positives = 668/843 (79%), Gaps = 13/843 (1%)

Query: 2    ILGSLSFD-DGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYS 60
            ILGSLSFD   N   + L R KTGKR LLIFSALVTRHRK SDK MP+I+N VL IVK++
Sbjct: 257  ILGSLSFDCVVNQEDEYLTRLKTGKRSLLIFSALVTRHRKHSDKWMPEIINCVLNIVKFT 316

Query: 61   ANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEW 120
             N SKL FL ER++SL FDVIS++LETGPGWRLVSPHF+ LL+ AIFPALV+N+KD+SEW
Sbjct: 317  KNTSKLPFLSERLLSLGFDVISNILETGPGWRLVSPHFTTLLESAIFPALVMNDKDMSEW 376

Query: 121  EEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSK 180
            EED DEYI+KN PS+++EISGWREDLFTARKSA+NLLGVIS+SKGPPM T ++  S SSK
Sbjct: 377  EEDPDEYIQKNLPSDIDEISGWREDLFTARKSAVNLLGVISMSKGPPMETATDSLSASSK 436

Query: 181  RKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLR 240
            RKKG+K+K+++ R +MGELLVLPFLS+FPIP  +N S  +I  DYFGVLMAYGGLQ+FLR
Sbjct: 437  RKKGQKNKKSNQRRSMGELLVLPFLSKFPIPSASNLSQKKILNDYFGVLMAYGGLQDFLR 496

Query: 241  EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300
            EQ+ EF   LVR+R+LPLY+V+V LPYLVASANW+LGEL SCLPE++S +VYS LL AL 
Sbjct: 497  EQEPEFVTTLVRTRILPLYTVAVSLPYLVASANWVLGELGSCLPEEMSTEVYSQLLMALV 556

Query: 301  MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYE----DEENSILFE 356
            M D+   SCYPVR SAAGAI  LL+NDYMPP++ PLLQVIVG IG +    + E+SILF+
Sbjct: 557  MPDRQGPSCYPVRVSAAGAITTLLDNDYMPPDFLPLLQVIVGNIGNDETESESESSILFQ 616

Query: 357  LLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 416
            LLSS++ A +E VA HIP+IVSS+V+ +SK +  + EPWPQVVER  AALA+M Q+WE+ 
Sbjct: 617  LLSSIMEAGDEKVAVHIPHIVSSIVSPVSKWLTSNLEPWPQVVERAIAALAVMGQTWEDS 676

Query: 417  LREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRS 476
              EE E D+S   W  GQ AIA+AF+ALLQQAWLT   PL C ++ P SCI+D S LL+S
Sbjct: 677  RPEESESDESRQNWALGQVAIARAFAALLQQAWLT---PL-CTLAPPSSCIEDLSTLLQS 732

Query: 477  IILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNF 536
            ++LS+ E ++I+ELK+SELL VW+++I +WHAWEE+EDLS+F+ IKEIVNL  +Y+LKNF
Sbjct: 733  VLLSIDENHMIQELKVSELLSVWSEMIAEWHAWEESEDLSIFEVIKEIVNLDCRYKLKNF 792

Query: 537  IVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGV 596
            +V++MPP PAPPVP +SI+EGIGAF+SEAI QYPSAT RACSCVH LLH P +S ETEGV
Sbjct: 793  VVKEMPPLPAPPVPERSIVEGIGAFISEAIKQYPSATLRACSCVHILLHCPTFSPETEGV 852

Query: 597  KQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALW 656
            KQSL I FS  AFSRF  +QS P++LWKP++LAISSCYLCYP +VEGIL+K + GGF +W
Sbjct: 853  KQSLAIVFSQTAFSRFIEVQSTPNALWKPLLLAISSCYLCYPDIVEGILEKGKHGGFKIW 912

Query: 657  GSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQ 716
             SAL  + + S EP L+ E+E+KL V+TLA+++E+LL  GN G   +Q+C+ SL+E +V+
Sbjct: 913  ASALCHVSNRSFEPGLTAEAEMKLIVMTLARLIEQLLKQGNSGDE-IQNCFTSLLEVSVR 971

Query: 717  LKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSE--GDECEETEEEFLERYAKAAVNL 774
            LKE  + +E+++G D +  + ++D +E  DDD D +   +E EETEEEFL RYAKAA  L
Sbjct: 972  LKEAHDGKEDEQGSDNDENEDDEDEDEDSDDDYDEDSGSEEYEETEEEFLNRYAKAAEAL 1031

Query: 775  ENNT-LVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLK 833
            EN + ++EEGD EDQE  +ELG L +VD+  V+ S I++YH+V+ +G  L S+L+  FL 
Sbjct: 1032 ENGSAIIEEGDDEDQELGLELGQLIDVDEQNVLLSLIDKYHHVLTRGLVLPSELVMNFLN 1091

Query: 834  AYP 836
            A+P
Sbjct: 1092 AFP 1094

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449441658\|ref\|XP_004138599.1\| PREDICTED: uncharacterized protein LOC101205180 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356521695\|ref\|XP_003529487.1\| PREDICTED: uncharacterized protein LOC100783023 [Glycine max]	Back alignment and taxonomy information

>gi\|255556524\|ref\|XP_002519296.1\| protein transporter, putative [Ricinus communis] gi\|223541611\|gb\|EEF43160.1\| protein transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297834642\|ref\|XP_002885203.1\| protein transporter [Arabidopsis lyrata subsp. lyrata] gi\|297331043\|gb\|EFH61462.1\| protein transporter [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|145338625\|ref\|NP_188360.3\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642419\|gb\|AEE75940.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110738031\|dbj\|BAF00950.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334185410\|ref\|NP_001189916.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642420\|gb\|AEE75941.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357155759\|ref\|XP_003577228.1\| PREDICTED: uncharacterized protein LOC100846341 [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326530652\|dbj\|BAK01124.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		845
TAIR\|locus:2077715		1030	AT3G59020 "AT3G59020" [Arabido	0.106	0.087	0.275	3e-07
UNIPROTKB\|E2R703		1036	IPO8 "Uncharacterized protein"	0.115	0.094	0.23	2.1e-05
UNIPROTKB\|O15397		1037	IPO8 "Importin-8" [Homo sapien	0.115	0.094	0.23	2.7e-05
UNIPROTKB\|F1SGB6		900	IPO8 "Uncharacterized protein"	0.115	0.108	0.23	3e-05
UNIPROTKB\|E1B8Q9		1039	IPO8 "Uncharacterized protein"	0.115	0.094	0.23	4.2e-05
MGI\|MGI:2444611		1010	Ipo8 "importin 8" [Mus musculu	0.115	0.097	0.23	0.00012
CGD\|CAL0002327		1002	orf19.5834 [Candida albicans (	0.112	0.094	0.285	0.00023
TAIR\|locus:2065939		1040	SAD2 "AT2G31660" [Arabidopsis	0.106	0.086	0.285	0.00039

TAIR\|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 128 (50.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 27/98 (27%), Positives = 54/98 (55%)

Query:    68 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 127
             +L +R+I+L    +S+ +     + L+ PH + LL + +FP +  N+ D   W+ED  EY
Sbjct:   313 YLPDRVINLILQYLSNSISKSSMYNLLQPHLNTLLFEIVFPLMCFNDNDQMLWDEDPHEY 372

Query:   128 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG 165
             +RK +     +I    EDL++ R ++++ +  +   +G
Sbjct:   373 VRKGY-----DII---EDLYSPRTASMDFVTELVRKRG 402

GO:0000059 "protein import into nucleus, docking" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O15397 IPO8 "Importin-8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SGB6 IPO8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B8Q9 IPO8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2444611 Ipo8 "importin 8" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

CGD\|CAL0002327 orf19.5834 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

TAIR\|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		845
COG5656		970	COG5656, SXM1, Importin, protein involved in nucle	9e-08
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	1e-05
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	1e-05
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	4e-05
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	8e-05
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	9e-05
pfam09026		101	pfam09026, Cenp-B_dimeris, Centromere protein B di	1e-04
pfam03344		715	pfam03344, Daxx, Daxx Family	2e-04
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	3e-04
pfam04546		211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	3e-04
TIGR01651		600	TIGR01651, CobT, cobaltochelatase, CobT subunit	4e-04
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	5e-04
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	5e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	7e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	7e-04
pfam12253		76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	8e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.001
pfam05285		317	pfam05285, SDA1, SDA1	0.001
pfam08553		794	pfam08553, VID27, VID27 cytoplasmic protein	0.001
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.002
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.002
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	0.002
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.002
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
pfam04889		241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.002
PRK14160		211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.002
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.003
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.003
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.003
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.003
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.003
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.004
PTZ00248		319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.004
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.004
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.004

>gnl\|CDD\|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score = 55.6 bits (134), Expect = 9e-08
 Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 62/332 (18%)

Query: 91  WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTAR 150
           WRL+ PH   ++   IFP L L+E++   +E D DEYIR+ +        G   DL    
Sbjct: 336 WRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN---GLSPDLAALF 392

Query: 151 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPI 210
                   +IS S                  K+ E++ +           +L FL     
Sbjct: 393 ------FLIISKS------------------KRKEETFQG----------ILSFLLSILG 418

Query: 211 PCDANASHSRIQKDYFGVLMAYGGLQEFLREQK------SEFTANLVRSRVLPLYSVSVC 264
              A  S+    +   G L     ++ F+ +          F  N     V+P +  +  
Sbjct: 419 QSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH----VIPAFRSNYG 474

Query: 265 LPYLVASANWILGELASCLPE-DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323
             +L + A   +  +     +  I  + Y +    L+       +  PV   AA A+   
Sbjct: 475 --FLKSRACEFISTIEEDFKDNGILLEAYENTHNCLK------NNHLPVMIEAALALQFF 526

Query: 324 LENDYMPPEWYPLLQVIVGRIGY--EDEENSILFELLSSVVGAANENVADHIPYIVSSLV 381
           + N+    ++   +   + ++       E   L  ++ S V   +E ++   P +  SLV
Sbjct: 527 IFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLV 586

Query: 382 AAISK----HMHPSSEPWPQVVERGFAALALM 409
               K     +  SS+    V ++  AA  ++
Sbjct: 587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618

Length = 970

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region	Back alignment and domain information

>gnl\|CDD\|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|219900 pfam08553, VID27, VID27 cytoplasmic protein	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein	Back alignment and domain information

>gnl\|CDD\|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		845
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	100.0
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.98
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.93
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.89
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.85
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.39
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.23
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.83
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.19
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.06
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	96.34
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.79
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	95.3
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.29
KOG1824		1233	consensus TATA-binding protein-interacting protein	94.64
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.21
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	94.07
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.59
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	92.49
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	92.39
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.6
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.5
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	91.04
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	90.97
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	90.95
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	89.35
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	88.91
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.3
PTZ00429		746	beta-adaptin; Provisional	87.47
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.45
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	87.08
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	86.76
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	85.02
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.9
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	84.3
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	82.73
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	82.54
COG5096		757	Vesicle coat complex, various subunits [Intracellu	81.9
KOG1242		569	consensus Protein containing adaptin N-terminal re	80.36
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	80.17

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=8.3e-120  Score=1043.70  Aligned_cols=677  Identities=21%  Similarity=0.325  Sum_probs=562.8

Q ss_pred             CccccceeeeccCcceeehhhHHHhhhcc--------------cccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhh
Q 003135           12 NTVKDNLLRFKTGKRGLLIFSALVTRHRK--------------FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLA   77 (845)
Q Consensus        12 ~~~~~~~~~~K~kKwa~~il~rl~~Ry~~--------------~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~   77 (845)
                      ++.|..+|||||||||++|++|+|+||++              |..+|+|.|++.+++++.+  |.. +.|++||+++++
T Consensus       248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~--~~~-~~yls~rvl~~~  324 (1010)
T KOG1991|consen  248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQ--WRQ-QLYLSDRVLYYL  324 (1010)
T ss_pred             hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cccCCHHHHHHH
Confidence            78899999999999999999999999997              4678899999999999999  666 899999999999


Q ss_pred             hHHHHhhhhcCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchh
Q 003135           78 FDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLL  157 (845)
Q Consensus        78 l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL  157 (845)
                      ++|+++|++++.+|++++||+..|++++|||.||+|++|+|+||+||+||||+++|.        ++|.+|||.||.+||
T Consensus       325 l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di--------~ed~~sp~~Aa~~~l  396 (1010)
T KOG1991|consen  325 LNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDI--------FEDGYSPDTAALDFL  396 (1010)
T ss_pred             HHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCch--------hcccCCCcHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999997        899999999999999


Q ss_pred             eeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHH
Q 003135          158 GVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQE  237 (845)
Q Consensus       158 ~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~  237 (845)
                      .++                 ++||+|+     +++ +++.  |+.++|++|...+.+    .+++|+|||||+++|+|++
T Consensus       397 ~~~-----------------~~KR~ke-----~l~-k~l~--F~~~Il~~~~~~~~~----~~~~rqkdGAL~~vgsl~~  447 (1010)
T KOG1991|consen  397 TTL-----------------VSKRGKE-----TLP-KILS--FIVDILTRYKEASPP----NKNPRQKDGALRMVGSLAS  447 (1010)
T ss_pred             HHH-----------------HHhcchh-----hhh-hHHH--HHHHHHHhhcccCCC----ccChhhhhhHHHHHHHHHH
Confidence            995                 9999888     577 5888  899999999877543    4689999999999999999


Q ss_pred             HHhhhc--hhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc-c-ccchhhHHHHHHHHHHhhcCCCCCccccee
Q 003135          238 FLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQMLDKGDTSCYPVR  313 (845)
Q Consensus       238 ~l~~~~--~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVr  313 (845)
                      .|.++.  ++.+|.|+.+||+|+|+  |+.|||||||||++++|++. | ++.++.++++++.+||.+++     ++|||
T Consensus       448 ~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~-----~lPV~  520 (1010)
T KOG1991|consen  448 ILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDN-----ELPVR  520 (1010)
T ss_pred             HHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-----cCchh
Confidence            998742  35679999999999999  89999999999999999987 7 67889999999999999432     39999


Q ss_pred             eccchhhhhhhccC-----CCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhc
Q 003135          314 ASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM  388 (845)
Q Consensus       314 v~AA~Al~~~l~~~-----~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~  388 (845)
                      |+||.||+.|+.++     +++|+++++||+||+ |+++. |||.|..+|+.+|+.|+|+++|||++||++|+++|+|++
T Consensus       521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l  598 (1010)
T KOG1991|consen  521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVL  598 (1010)
T ss_pred             hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            99999999999864     699999999999999 89999 999999999999999999999999999999999999997


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 003135          389 HPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCID  468 (845)
Q Consensus       389 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~  468 (845)
                      ....+                         +++. +++..++++|   +|+||+|+|            .|+++.|+++.
T Consensus       599 ~~~~~-------------------------~~~~-~ddk~iaA~G---iL~Ti~Til------------~s~e~~p~vl~  637 (1010)
T KOG1991|consen  599 QTSED-------------------------EDES-DDDKAIAASG---ILRTISTIL------------LSLENHPEVLK  637 (1010)
T ss_pred             hccCC-------------------------CCcc-chHHHHHHHH---HHHHHHHHH------------HHHhccHHHHH
Confidence            75211                         0010 1111233444   699999999            99999999999


Q ss_pred             chhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC---CCchHHHHHHHHhccccccc
Q 003135          469 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVNLHSKYEL  533 (845)
Q Consensus       469 ~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~---~~~~~dy~~el~~~~~~~~L  533 (845)
                      ++|.+++|++.++      |++++.|||.++++++            .||.+|+.+.   ..+++|||++|++     +|
T Consensus       638 ~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~-----~l  706 (1010)
T KOG1991|consen  638 QLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMP-----AL  706 (1010)
T ss_pred             HHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HH
Confidence            9999999999999      9999999999999999            7999999997   6789999999999     99


Q ss_pred             cccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCccccc--ccchhhhh-----hcCCCCCcccccccchhhhhhhh
Q 003135          534 KNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWR--ACSCVHTL-----LHVPKYSFETEGVKQSLTISFSC  606 (845)
Q Consensus       534 ~nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~--~~~~~~~l-----~~v~~~~~~~~~~~~~~~~~~~~  606 (845)
                      +||++||++.+..+|.|++.+++||++.+++...   ...+.  +|..++.+     |.+++|           +|.|++
T Consensus       707 ~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~---~D~d~~~a~kLle~iiL~~kg~~dq~-----------iplf~~  772 (1010)
T KOG1991|consen  707 HNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENG---EDSDCESACKLLEVIILNCKGLLDQY-----------IPLFLE  772 (1010)
T ss_pred             hhheeeCchhhhccchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHhcCcHhhH-----------hHHHHH
Confidence            9999999999999999999999999955543321   22233  33335544     567777           999999


Q ss_pred             hHhhhhHhhccCCCCchhHHHHhhhccccchhhhHhhhhhcccC--CCeehhhhHHHhhhcCCCCCCcccchhHHHHHHH
Q 003135          607 AAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLT  684 (845)
Q Consensus       607 ~al~rl~~~~~~~~~~~~~~i~vi~~~~~~~p~~~l~~L~~~~~--~~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLg  684 (845)
                      +++.|++.. .++..+++++++|+++|+||||..|+++|++.|.  .||+.||+.+         +.++++||||+||||
T Consensus       773 ~a~~~l~~~-~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~---------~~~~~~HDkKlcvL~  842 (1010)
T KOG1991|consen  773 LALSRLTRE-VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFI---------NQFKKVHDKKLCVLG  842 (1010)
T ss_pred             HHHHHHhcc-ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHH---------HHHHhhhhHHHHHHH
Confidence            999999863 5678999999999999999999999999999996  8999999999         788889999999999


Q ss_pred             HHHHHHHHh--cCCC-CCCccc---HHHHHHHHHHHHhhhhhhcccccCCCCchhhccccCCCCCCCCCCCCCCccchhh
Q 003135          685 LAKVVERLL--GLGN-PGSSLL---QDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEE  758 (845)
Q Consensus       685 L~sLl~~~~--~l~~-~~~~il---~~~~~~L~~a~~~~~e~~ke~~~~~~~d~~~~ded~d~~d~d~d~~~~d~de~~e  758 (845)
                      |++|+.+++  .+.. ...++.   ..++.+||+|++.|.+.++|+++++++++.+++|   +..       +|+||+++
T Consensus       843 l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e---~~~-------~d~dD~d~  912 (1010)
T KOG1991|consen  843 LLTLISLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEE---DFI-------DDEDDIDE  912 (1010)
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchh---hcc-------Cccccccc
Confidence            999999853  2211 122343   4449999999999999888865532211111111   111       12233334


Q ss_pred             hHHHHHHHHHHHHhhcccCcccccCCccc--ccccccc--ccccccchhhHHHHHHHhh-hhhhhccCCC
Q 003135          759 TEEEFLERYAKAAVNLENNTLVEEGDVED--QEHDIEL--GSLDEVDQLKVVASSIERY-HNVIMQGQTL  823 (845)
Q Consensus       759 ~~~~yLe~l~~~a~~~~~~~~~~~~~~~d--~~~e~~l--~~lD~v~~~~~~~~~~~~~-~~~~~~~~~~  823 (845)
                      ++++|++.+++.+..-.....+|||+|+|  +++|||+  ||||.||+|++|+++|... |+..-|.|.|
T Consensus       913 ~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l  982 (1010)
T KOG1991|consen  913 DDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKL  982 (1010)
T ss_pred             cchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHHHhhhccChHHHHHH
Confidence            44467777776443322211223333333  4556665  9999999999999999754 4444454444

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		845
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
3cx5_F		146	Cytochrome B-C1 complex subunit 6; complex III, el	1e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-04

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

 Score = 80.7 bits (198), Expect = 1e-15
 Identities = 55/393 (13%), Positives = 120/393 (30%), Gaps = 76/393 (19%)

Query: 30  IFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP 89
           +     TR+      ++ + +     ++   +N  K D L    +S +   ++ V     
Sbjct: 269 LVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDIL----VSKSLSFLTAVTRIPK 324

Query: 90  GWRLVS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147
            + + +     + + ++ I P + L E+D+  +E+D  EYIR++             D  
Sbjct: 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTD 375

Query: 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSR 207
           T R++  + L  +       +                                 L  +  
Sbjct: 376 TRRRACTDFLKELKEKNEVLVTNI-----------------------------FLAHMKG 406

Query: 208 FPIPCDANASHSRIQKD----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYS 260
           F     ++ S +   KD     F  L   G +        +          +     L S
Sbjct: 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466

Query: 261 VSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320
            ++    L   A   +    + L +    ++   L   LQ  +      Y V   AA  I
Sbjct: 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITI 520

Query: 321 VGLLEN-------------DYMPPEWYPLLQVIVGRIGYEDE------ENSILFELLSSV 361
             +L               + +      LL+ ++  I           EN  L   +  V
Sbjct: 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580

Query: 362 VGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394
           +  + +++    P +++  +  ++      S P
Sbjct: 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613

PyMOL of 1wa5

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		845
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.69
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.66
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.61
2x19_B		963	Importin-13; nuclear transport, protein transport;	99.61
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.22
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.15
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.74
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.64
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.13
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.95
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.27
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.09
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.05
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.91
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.14
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.98
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.93
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.21
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	95.12
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.99
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	94.93
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	94.8
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	92.07
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	91.11
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	90.68
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	90.53
2x19_B		963	Importin-13; nuclear transport, protein transport;	90.52
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	90.04
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	89.55
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	89.48
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	89.22
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	89.14
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	87.5
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	86.88
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	86.8
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	82.45
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	82.04
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	80.75
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	80.31
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	80.16

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

Probab=100.00  E-value=7.2e-58  Score=570.77  Aligned_cols=562  Identities=14%  Similarity=0.129  Sum_probs=438.7

Q ss_pred             ccccceeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCce
Q 003135           13 TVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWR   92 (845)
Q Consensus        13 ~~~~~~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~   92 (845)
                      ++++..+|||+|||+++++++++.||.+.+.+|++.|++.+|+++..  +.  ..+.+++++.++++|++.+++.+.+|+
T Consensus       252 d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~al~fl~~~~~~~~~~~  327 (960)
T 1wa5_C          252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS--IS--NQPKYDILVSKSLSFLTAVTRIPKYFE  327 (960)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--CC--SCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence            45677899999999999999999999999999999999999999986  32  346789999999999999999999999


Q ss_pred             eec--chhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCC
Q 003135           93 LVS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGT  170 (845)
Q Consensus        93 ll~--p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~  170 (845)
                      +++  |++..|++.+|+|+|+++++|+|+|++||+||||++.|         .+|.+|+|+||.++|..|          
T Consensus       328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e---------~~d~~s~R~aa~~~L~~l----------  388 (960)
T 1wa5_C          328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL----------  388 (960)
T ss_dssp             GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH----------
T ss_pred             HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC---------cccccCcHHHHHHHHHHH----------
Confidence            998  99999999999999999999999999999999999876         356789999999999996          


Q ss_pred             CCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhc---hh--
Q 003135          171 PSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK---SE--  245 (845)
Q Consensus       171 ~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~---~~--  245 (845)
                             +.++++.+     .+ .+++  ++.+++++|..++      ..+|+.||||++++|+++..+....   ..  
T Consensus       389 -------~~~~~~~v-----~~-~~l~--~i~~~l~~~~~~~------~~~w~~reaal~algaia~~~~~~~~~~~~~~  447 (960)
T 1wa5_C          389 -------KEKNEVLV-----TN-IFLA--HMKGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTN  447 (960)
T ss_dssp             -------HHHCHHHH-----HH-HHHH--HHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBC
T ss_pred             -------HHHcchhH-----HH-HHHH--HHHHHHHHhccCc------chhHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence                   66666442     22 2444  5777788776532      3479999999999999986542111   11  


Q ss_pred             ---hHHHHHhhccccceeeeeh---hhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchh
Q 003135          246 ---FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGA  319 (845)
Q Consensus       246 ---~~e~fl~~~VlP~l~~~s~---~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~A  319 (845)
                         .+++|+.++|+|.++  ++   +|++|+||||++|+|++.++++.+..+++.++++|.+++      +|||++||.|
T Consensus       448 ~~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~A  519 (960)
T 1wa5_C          448 NLLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAIT  519 (960)
T ss_dssp             TTCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHH
T ss_pred             ccccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHH
Confidence               468999999999998  45   999999999999999999877889999999999999876      9999999999


Q ss_pred             hhhhhcc-------------CCCCCCchhhHHHHhhccCcc----c--cchhHHHHHHHHHHhccccccccchhHHHHHH
Q 003135          320 IVGLLEN-------------DYMPPEWYPLLQVIVGRIGYE----D--EENSILFELLSSVVGAANENVADHIPYIVSSL  380 (845)
Q Consensus       320 l~~~l~~-------------~~l~p~i~~llq~Ll~~l~~e----~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L  380 (845)
                      |.+|+++             +.+.|+++++|+.|+..+...    .  .+++.++.+|+++++.+++++.||+..+++.|
T Consensus       520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L  599 (960)
T 1wa5_C          520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQF  599 (960)
T ss_dssp             HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHH
T ss_pred             HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999873             258999999999999976653    1  36899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhccccccccc
Q 003135          381 VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEV  460 (845)
Q Consensus       381 ~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~  460 (845)
                      ...+.+.+.++.+  +.+.++                                   ++++|++++            .. 
T Consensus       600 ~~~l~~~~~~~~~--~~~~~~-----------------------------------~~e~l~~l~------------~~-  629 (960)
T 1wa5_C          600 IEIVTIMAKNPSN--PRFTHY-----------------------------------TFESIGAIL------------NY-  629 (960)
T ss_dssp             HHHHHHHTTSCCC--HHHHHH-----------------------------------HHHHHHHHH------------HT-
T ss_pred             HHHHHHHHhCCCC--cHHHHH-----------------------------------HHHHHHHHH------------hc-
Confidence            9998877665444  244444                                   366666666            22 


Q ss_pred             CCCCCcccchhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC--CCc-hHHHHHHHH
Q 003135          461 SAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE--DLS-VFDCIKEIV  525 (845)
Q Consensus       461 ~~~p~~~~~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~--~~~-~~dy~~el~  525 (845)
                       ..|+.+..+++.++|++..+      +++++.+|++++++++            .+|.+|+.+.  +.+ ...|+..++
T Consensus       630 -~~~~~~~~~~~~~~p~~~~i------L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  702 (960)
T 1wa5_C          630 -TQRQNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVT  702 (960)
T ss_dssp             -SCGGGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHH
T ss_pred             -CCcchHHHHHHHHHHHHHHH------HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHH
Confidence             34566777888899999999      9998899999999997            3577776554  210 013889999


Q ss_pred             hccccccccccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCcccccccch----hhhh-hc-CCCCCcccccccch
Q 003135          526 NLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSC----VHTL-LH-VPKYSFETEGVKQS  599 (845)
Q Consensus       526 ~~~~~~~L~nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~----~~~l-~~-v~~~~~~~~~~~~~  599 (845)
                      +     +|++|+.+|++.+.+    ++.++++++.+++++..+     ..++.+    +..+ ++ +.+|          
T Consensus       703 ~-----~L~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~-----~~a~~ll~~i~~~~~~~~~~~y----------  758 (960)
T 1wa5_C          703 R-----LLKSFIKTDSSIFPD----LVPVLGIFQRLIASKAYE-----VHGFDLLEHIMLLIDMNRLRPY----------  758 (960)
T ss_dssp             H-----HHHHHHHHHGGGCSC----SHHHHHHHHHHHTCTTTH-----HHHHHHHHHHHHHSCHHHHGGG----------
T ss_pred             H-----HHHHHHHhChHHHHH----HHHHHHHHHHHhCCCccc-----chHHHHHHHHHHHCCHHHHHHH----------
Confidence            8     999999999887765    677888877655433211     112222    2222 23 5555          


Q ss_pred             hhhhhhhhHhhhhHhhccCCCCch-hHHHHhhhccccchhhhHhhhhhcccCC-Cee----hhhhHHHhhhcCCCCCCcc
Q 003135          600 LTISFSCAAFSRFRAIQSKPSSLW-KPVVLAISSCYLCYPAVVEGILKKDEDG-GFA----LWGSALAFLCSSSLEPRLS  673 (845)
Q Consensus       600 ~~~~~~~~al~rl~~~~~~~~~~~-~~~i~vi~~~~~~~p~~~l~~L~~~~~~-~f~----~W~~~l~~~~~~~~~~~~~  673 (845)
                       ++.++..++++++.  .++..++ ..++.+...|++|+|+.++++|++.|++ |+.    .|+..+         .++.
T Consensus       759 -l~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~---------~~~~  826 (960)
T 1wa5_C          759 -IKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL---------PTIG  826 (960)
T ss_dssp             -HHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHG---------GGCC
T ss_pred             -HHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccch---------hhcc
Confidence             99999999999974  3455555 5677788888999999999999999974 444    899988         8999


Q ss_pred             cchhHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhhhh
Q 003135          674 LESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKE  719 (845)
Q Consensus       674 r~~D~Kl~iLgL~sLl~~~~~l~~~~~~il~~~~~~L~~a~~~~~e  719 (845)
                      +.+|||++++||++|++..+.........+..++.++...+...++
T Consensus       827 ~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  872 (960)
T 1wa5_C          827 NLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSI  872 (960)
T ss_dssp             SHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCST
T ss_pred             CHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999865100012334566666666666554443

PyMOL of 1wa5

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		845
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	5e-14

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (180), Expect = 5e-14
 Identities = 87/740 (11%), Positives = 196/740 (26%), Gaps = 108/740 (14%)

Query: 30  IFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP 89
           +     TR+      ++ + +     ++   +N  K D L    +S +   ++ V     
Sbjct: 269 LVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDIL----VSKSLSFLTAVTRIPK 324

Query: 90  GWRLV--SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147
            + +       + + ++ I P + L E+D+  +E+D  EYIR++             D  
Sbjct: 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTD 375

Query: 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSR 207
           T R++  + L  +       +                                 L  +  
Sbjct: 376 TRRRACTDFLKELKEKNEVLVTNI-----------------------------FLAHMKG 406

Query: 208 FPIPCDANASHSRIQKD----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYS 260
           F     ++ S +   KD     F  L   G +        +          +     L S
Sbjct: 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466

Query: 261 VSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320
            ++    L   A   +    + L +    ++   L   LQ      T  Y V   AA  I
Sbjct: 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ------TDEYVVYTYAAITI 520

Query: 321 VGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL 380
             +L           +          E    +++  +L            + +   +  +
Sbjct: 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580

Query: 381 VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKA 440
           +      + P               LA   +      +       +   +ES  A +   
Sbjct: 581 LQTSEDSIQPLFPQ----------LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT 630

Query: 441 FSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWA 500
               L     + +       S            + + ++  S         L++ LL   
Sbjct: 631 QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLL--- 687

Query: 501 DLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGA 560
                           +   I  +  L     LK+FI               SI   +  
Sbjct: 688 ----------APNVWELKGNIPAVTRL-----LKSFIKTD-----------SSIFPDLVP 721

Query: 561 FLS--EAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSK 618
            L   + ++   +        +  ++       +   ++  +          R +  +  
Sbjct: 722 VLGIFQRLIASKAYEVHGFDLLEHIML----LIDMNRLRPYIKQIAV-LLLQRLQNSK-T 775

Query: 619 PSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEI 678
              + K  V             +   + + +DG F                P +    + 
Sbjct: 776 ERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL----PTIGNLLDR 831

Query: 679 KLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKE 738
           K+A++ +  +V       +   +L+     S++E A          +  + D+ E     
Sbjct: 832 KIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTF 891

Query: 739 DDNEESEDDDEDSEGDECEE 758
             +        +   D   E
Sbjct: 892 GSHFSKLVSISEKPFDPLPE 911

PyMOL of d1wa5c_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		845
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.61
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.39
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.17
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.16
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	94.22
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.25
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.54
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.87
d1b3ua_		588	Constant regulatory domain of protein phosphatase	89.46
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	88.07
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	85.38
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	82.38
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	80.4
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	80.1

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-45  Score=449.73  Aligned_cols=561  Identities=13%  Similarity=0.121  Sum_probs=415.4

Q ss_pred             cccceeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCcee
Q 003135           14 VKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRL   93 (845)
Q Consensus        14 ~~~~~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~l   93 (845)
                      .+....++|+|||+..++.++..+|.+++.++++.|++.+|+++....    .....+.++..+++|+..+++.+.+++.
T Consensus       253 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~  328 (959)
T d1wa5c_         253 TEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSIS----NQPKYDILVSKSLSFLTAVTRIPKYFEI  328 (959)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC----SCTTSHHHHHHHHHHHHHHHTSHHHHGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            445566779999999999999999999999999999999999998732    2334678999999999999999988887


Q ss_pred             ec--chhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCC
Q 003135           94 VS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTP  171 (845)
Q Consensus        94 l~--p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~  171 (845)
                      +.  +++..++.++|+|+++++++|.|.|++||++|++++.+         .+|.+++|.||.+++..+           
T Consensus       329 ~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~---------~~~~~~~r~~a~~ll~~l-----------  388 (959)
T d1wa5c_         329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL-----------  388 (959)
T ss_dssp             GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH-----------
T ss_pred             HhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhh---------hcccccHHHHHHHHHHHH-----------
Confidence            74  89999999999999999999999999999999998876         356889999999999996           


Q ss_pred             CCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhh------ch-
Q 003135          172 SNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ------KS-  244 (845)
Q Consensus       172 ~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~------~~-  244 (845)
                            ++++++.+     .+ .++.  ++.+.++++...+      ..+|+.+|+++.++|+++......      .. 
T Consensus       389 ------~~~~~~~~-----~~-~~~~--~i~~~~~~~~~~~------~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~  448 (959)
T d1wa5c_         389 ------KEKNEVLV-----TN-IFLA--HMKGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNN  448 (959)
T ss_dssp             ------HHHCHHHH-----HH-HHHH--HHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred             ------HHhccccc-----hH-HHHH--HHHHHHHhhccCC------ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence                  66665431     11 1232  4555666554332      358999999999999987432110      11 


Q ss_pred             -hhHHHHHhhccccceee-eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhh
Q 003135          245 -EFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG  322 (845)
Q Consensus       245 -~~~e~fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~  322 (845)
                       ..+.+++.++|.|++.. ..+++++|+||||++++|+..+.++.+.++++.++++|++++      .+||++||.|+++
T Consensus       449 ~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~V~~~a~~al~~  522 (959)
T d1wa5c_         449 LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEK  522 (959)
T ss_dssp             TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHH
Confidence             12588999999999975 257899999999999999998766778999999999999887      9999999999999


Q ss_pred             hhcc-------------CCCCCCchhhHHHHhhccCccc------cchhHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 003135          323 LLEN-------------DYMPPEWYPLLQVIVGRIGYED------EENSILFELLSSVVGAANENVADHIPYIVSSLVAA  383 (845)
Q Consensus       323 ~l~~-------------~~l~p~i~~llq~Ll~~l~~e~------~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~  383 (845)
                      ++..             +.+.|++.++++.|+..+....      .++++++.+|+++++.+++.+.|++..+++.|.+.
T Consensus       523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~  602 (959)
T d1wa5c_         523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEI  602 (959)
T ss_dssp             HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHH
T ss_pred             HHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9862             2578999999999988664332      24678999999999999999999999999999999


Q ss_pred             HHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCC
Q 003135          384 ISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP  463 (845)
Q Consensus       384 f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~  463 (845)
                      +.+...++.++  .+.+++                                   ++++++++            ..  ..
T Consensus       603 ~~~~~~~~~~~--~~~~~~-----------------------------------~e~l~~l~------------~~--~~  631 (959)
T d1wa5c_         603 VTIMAKNPSNP--RFTHYT-----------------------------------FESIGAIL------------NY--TQ  631 (959)
T ss_dssp             HHHHTTSCCCH--HHHHHH-----------------------------------HHHHHHHH------------HT--SC
T ss_pred             HHHHhcCccch--HHHHHH-----------------------------------HHHHHHHH------------Hh--cC
Confidence            98887766553  454444                                   55555555            22  13


Q ss_pred             CCcccchhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC---CCchHHHHHHHHhcc
Q 003135          464 PSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVNLH  528 (845)
Q Consensus       464 p~~~~~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~---~~~~~dy~~el~~~~  528 (845)
                      |+....+++.+.|++..+      ++++..+|++++++++            ..|..++.+.   .....++++.+..  
T Consensus       632 ~~~~~~l~~~l~p~i~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--  703 (959)
T d1wa5c_         632 RQNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTR--  703 (959)
T ss_dssp             GGGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHH--
T ss_pred             chhHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHH--
Confidence            445566677778888888      7777778888888877            3455554443   1234467888887  


Q ss_pred             ccccccccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCcccccccch--hhhh-hcCCCCCcccccccchhhhhhh
Q 003135          529 SKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSC--VHTL-LHVPKYSFETEGVKQSLTISFS  605 (845)
Q Consensus       529 ~~~~L~nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~--~~~l-~~v~~~~~~~~~~~~~~~~~~~  605 (845)
                         .++||+.+|++.+..    ...++.++..+++...       ....++  +..+ .+.+.      ....++++.++
T Consensus       704 ---~l~~~~~~~~~~~~~----~~~~l~~~~~~l~~~~-------~~~~~~~ll~~ii~~~~~------~~~~~~l~~i~  763 (959)
T d1wa5c_         704 ---LLKSFIKTDSSIFPD----LVPVLGIFQRLIASKA-------YEVHGFDLLEHIMLLIDM------NRLRPYIKQIA  763 (959)
T ss_dssp             ---HHHHHHHHHGGGCSC----SHHHHHHHHHHHTCTT-------THHHHHHHHHHHHHHSCH------HHHGGGHHHHH
T ss_pred             ---HHHHHHHhCHHhhcc----hHHHHHHHHHHHCCCc-------chHHHHHHHHHHHHHCch------hhhHhHHHHHH
Confidence               899999999988864    3457777765443221       111111  2222 12211      11233499999


Q ss_pred             hhHhhhhHhhccCCCCchhHHHHhhhccccchhhhHhhhhhcccCC-----CeehhhhHHHhhhcCCCCCCcccchhHHH
Q 003135          606 CAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDG-----GFALWGSALAFLCSSSLEPRLSLESEIKL  680 (845)
Q Consensus       606 ~~al~rl~~~~~~~~~~~~~~i~vi~~~~~~~p~~~l~~L~~~~~~-----~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl  680 (845)
                      +.+++||+. ...+...+..++.+...|++|+|+.++++|++.+.+     +.+.|+...         +++++.+|||+
T Consensus       764 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~k~  833 (959)
T d1wa5c_         764 VLLLQRLQN-SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL---------PTIGNLLDRKI  833 (959)
T ss_dssp             HHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHG---------GGCCSHHHHHH
T ss_pred             HHHHHHHHh-cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcc---------cccCCHHHHHH
Confidence            999999974 222334455567777777889999999999988752     335688877         89999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 003135          681 AVLTLAKVVERLLGLGNPGSSLLQDCYASLMEA  713 (845)
Q Consensus       681 ~iLgL~sLl~~~~~l~~~~~~il~~~~~~L~~a  713 (845)
                      +++|+++|++.++.+...+..++..++..+.+.
T Consensus       834 ~~l~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~  866 (959)
T d1wa5c_         834 ALIGVLNMVINGQFFQSKYPTLISSTMNSIIET  866 (959)
T ss_dssp             HHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHH
Confidence            999999999754322123455666666666543

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure