Citrus Sinensis ID: 003138

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-----
MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNMHSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLVSTGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYSPLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKYGSS
ccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEEEccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEcccccccccccEEEEEEcEEEEcccEEEEEEEEccccccccEEEEEEcccEEEEEEEccccccccccccccccEEEEccccccccccccEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccHHHHHcccccHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccc
ccccccHHHHccccHHHHHHHHcccHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEEEEEccccHcHccHHHHHHHHHHHHccccHHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEcccHHHcccccccccccccEEEEEccccccccccEEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccHHHHEHccccHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEccccccccccHcHHcHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccEEcccccc
mgrfhvlqefdegKRSCRRRLaghnkrrrkthpdnvvnggslnderSSSYLLISLLRILSnmhsnnsdqtkdQDLLSHLFRNLagvvgtsnvrnlsgllqgsqgllnagpsngnvekvpdlvstgpepsrpstsacmtdnrigfsepmrsvgqcgtvpasdllqkkistndahsgrvqalsasqsiemfpsrssfsakanepeatfgrskmsnidlnnvyddsqERVEHLElshapvnpgpvslysplwlhpgsnkssppqasansdstssqsqssssgeaqsRTDRIVFKLfgkdpndfplVLRRQILDWlshsptdiesyirpgCIVLTIYLrlgkptweELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYngqvvldtplllkshkscrissikpiavpvSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYdlmggadtvnendelqclsfpcsipnvfgrGFIEvedhglsssfvPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKfrvghlhpnfyffpfKRFKWLLEFSMEHDWCAVVKKLLGILfdgtvdtgdhtSSELAILEMGLLHKAVRRNCRPMVELLLNyapdnvldkpgsrqkqlvdragsgfifkpnvigpagltplhvAACRDDAENVLDaltddpgsvgiEAWKsaqdstgltpndyaslRAHHSYIHLVQRKInkkssesgrvildipgsivdwdskqkplkgnkssrvLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLfksspevlyIFRPFRWELLKYGSS
mgrfhvlqefdegkrscrrrlaghnkrrrkthpdnvvnggslnderSSSYLLISLLRILSNMHSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLVStgpepsrpstsacMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALsasqsiemfpsrssfsakANEPEatfgrskmsnidLNNVYDDSQERVEHLELSHAPVNPGPVSLYSPLWLHPGSNKSSPPQASANsdstssqsqssssgeaqsrTDRIVFKLfgkdpndfpLVLRRQILDWLShsptdiesyirpGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKscrissikpiavpvservKFVVKgfnlsrsttrLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYapdnvldkpGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRkinkkssesgrVILDipgsivdwdskqkplkgnkssrvlsLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWellkygss
MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDErsssyllisllrilsNMHSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNlsgllqgsqgllNAGPSNGNVEKVPDLVSTGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYSPLWLHPGSNKSSPPqasansdstssqsqssssgeaqsRTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCdlgsslrrllegsddlFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMvaiaavcvcvaLLFKSSPEVLYIFRPFRWELLKYGSS
*************************************************YLLISLLRILS**************LLSHLFRNLAGVVGTSNVRNLSGLL************************************************************************************************************************************************LYSPLWL************************************RIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLD********LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWK*******LTPNDYASLRAHHSYIHLVQRKI********RVILDIPGSIVDW*******************TEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKY***
*GRFHVLQEFDEGKR*******************************************************************************************************************************************************************************************************************************************************************************RIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGAD*VNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISD************NQALDFLHEMGWLLHRSH************YFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTV********ELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINK*********LD***********************************************AYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKYG**
MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNMHSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPD***************CMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSIEM*****************FGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYSPLWLHPG******************************RTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKYGSS
************GKRSCRRR**************************SSSYLLISLLRILSNMHSNNS*QTKDQDLLSHLFRNLAGVVG****RNL*G*****QGL***********************************************************************************************************NIDL******************************************************************SRTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDN***************AGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIV***************RVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLK****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
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MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNMHSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLVSTGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYSPLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKYGSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query845 2.2.26 [Sep-21-2011]
Q9SMX9881 Squamosa promoter-binding yes no 0.859 0.824 0.499 0.0
Q9S7P5927 Squamosa promoter-binding no no 0.886 0.807 0.486 0.0
Q75LH6969 Squamosa promoter-binding yes no 0.905 0.789 0.421 1e-169
Q9LGU7862 Squamosa promoter-binding no no 0.649 0.636 0.432 1e-124
Q6Z8M81140 Squamosa promoter-binding no no 0.654 0.485 0.336 2e-86
A2YX041140 Squamosa promoter-binding N/A no 0.654 0.485 0.336 2e-86
Q8RY951035 Squamosa promoter-binding no no 0.940 0.768 0.303 1e-84
Q700C2988 Squamosa promoter-binding no no 0.640 0.547 0.310 3e-67
Q6I576842 Squamosa promoter-binding no no 0.430 0.432 0.252 3e-26
Q8S9G8801 Squamosa promoter-binding no no 0.295 0.312 0.274 3e-24
>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/847 (49%), Positives = 537/847 (63%), Gaps = 121/847 (14%)

Query: 3   RFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNM 62
           RFH+LQEFDEGKRSCRRRLAGHNKRRRKT+P+   NG   +D+ SS+YLLI+LL+ILSNM
Sbjct: 152 RFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGNP-SDDHSSNYLLITLLKILSNM 210

Query: 63  HSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLV 122
           H    + T DQDL+SHL ++L    G    +NL  LL      L  G S G++       
Sbjct: 211 H----NHTGDQDLMSHLLKSLVSHAGEQLGKNLVELL------LQGGGSQGSLN------ 254

Query: 123 STGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSA 182
                              IG                          N A  G  QA   
Sbjct: 255 -------------------IG--------------------------NSALLGIEQA--P 267

Query: 183 SQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPV 242
            + ++ F +R   +A  N  E    + KM++ DLN++Y DS +    +E S  P NP   
Sbjct: 268 QEELKQFSARQDGTATENRSEK---QVKMNDFDLNDIYIDSDD--TDVERSPPPTNPATS 322

Query: 243 SLYSPLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPL 302
           SL  P W+H    +SSPPQ S NSDS S QS SSSS +AQ RT RIVFKLFGK+PN+FP+
Sbjct: 323 SLDYPSWIH----QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPI 378

Query: 303 VLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDL 362
           VLR QILDWLSHSPTD+ESYIRPGCIVLTIYLR  +  WEEL  DLG SL +LL+ SDD 
Sbjct: 379 VLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDP 438

Query: 363 FWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGF 422
            W TGW+Y RVQ+ +AF+YNGQVV+DT L LKS     I S+KP+A+  +E+ +F VKG 
Sbjct: 439 LWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGM 498

Query: 423 NLSRSTTRLLCAIEGSYLVQETCYD-LMGGADTVNENDEL-QCLSFPCSIPNVFGRGFIE 480
           NL +  TRLLC++EG YL+QET +D      D   +N E+ +C++F C +P + GRGF+E
Sbjct: 499 NLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFME 558

Query: 481 VEDHGLSSSFVPFIVAE-QEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHE 539
           +ED GLSSSF PF+V E  +VCSEI +LE+ +E              T+   QA+DF+HE
Sbjct: 559 IEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFT-----------GTDSAKQAMDFIHE 607

Query: 540 MGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTG 599
           +GWLLHRS L    G   PN   FP  RF+WL+EFSM+ +WCAV++KLL + FDG V  G
Sbjct: 608 IGWLLHRSKL----GESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAV--G 661

Query: 600 DHTSSELAIL-EMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIF 658
           + +SS  A L E+ LLH+AVR+N +PMVE+LL Y P                +     +F
Sbjct: 662 EFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIP----------------KQQRNSLF 705

Query: 659 KPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRA 718
           +P+  GPAGLTPLH+AA +D +E+VLDALT+DP  VGIEAWK+ +DSTG TP DYA LR 
Sbjct: 706 RPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRG 765

Query: 719 HHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKV 778
           H SYIHL+QRKINKKS+    V+++IP S  D + K+ P  G  +S +          ++
Sbjct: 766 HFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKE-PKSGPMASAL----------EI 814

Query: 779 MQQQCRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWE 838
            Q  C+LC+ K+ Y   R S+ YRP MLSMVAIAAVCVCVALLFKS PEVLY+F+PFRWE
Sbjct: 815 TQIPCKLCDHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWE 874

Query: 839 LLKYGSS 845
           LL YG+S
Sbjct: 875 LLDYGTS 881
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 Back     alignment and function description
>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 Back     alignment and function description
>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 Back     alignment and function description
>sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query845
225432161 1029 PREDICTED: squamosa promoter-binding-lik 0.989 0.812 0.662 0.0
255556564 1026 Squamosa promoter-binding protein, putat 0.982 0.808 0.684 0.0
422779156 1029 squamosa promoter binding protein 5 [Vit 0.989 0.812 0.657 0.0
297736802 980 unnamed protein product [Vitis vinifera] 0.956 0.824 0.654 0.0
356532884 1032 PREDICTED: squamosa promoter-binding-lik 0.990 0.811 0.626 0.0
356558528 1032 PREDICTED: squamosa promoter-binding-lik 0.990 0.811 0.621 0.0
356519885 1039 PREDICTED: squamosa promoter-binding-lik 0.982 0.798 0.615 0.0
225437714 997 PREDICTED: squamosa promoter-binding-lik 0.943 0.799 0.618 0.0
147820979 967 hypothetical protein VITISV_025316 [Viti 0.893 0.780 0.584 0.0
255548291 1012 conserved hypothetical protein [Ricinus 0.957 0.799 0.575 0.0
>gi|225432161|ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/845 (66%), Positives = 667/845 (78%), Gaps = 9/845 (1%)

Query: 3    RFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNM 62
            RFH+LQEFDEGKRSCRRRLAGHN+RRRKTHPD VVNGGSLNDER   YLL+S+LRILSNM
Sbjct: 192  RFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLNDERGIRYLLMSVLRILSNM 251

Query: 63   HSNNSDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLV 122
            H+N+SDQTKDQDLLSH+ +NLA   GT N R++ GLLQGSQ LLNAG S G  EKVPD+V
Sbjct: 252  HANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQDLLNAGTSVGTAEKVPDMV 311

Query: 123  STGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSA 182
            S G  P++   SA    +        R +G C      ++ +K++ T+DA  G +Q LS 
Sbjct: 312  SNGLVPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEMAEKRVFTDDAQVGMLQNLSG 371

Query: 183  SQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPV 242
            +Q    FP+     A  N    T GR K++N DLNNVY+DSQ+ +E+ E S+ P NPG  
Sbjct: 372  TQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQDCIENPERSYGPANPGTR 431

Query: 243  SLYSPLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPL 302
             L   L +   S KSSPPQ SANSDSTS++S S+SSGEAQSRTDRIVFKLFGKDP+DFPL
Sbjct: 432  PLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSRTDRIVFKLFGKDPSDFPL 491

Query: 303  VLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDL 362
            V+R+Q+LDWLSH+PT+IES+IRPGCI+LTIYLRLGK TWEELCCDLGSSL RLL+ S+D 
Sbjct: 492  VMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEELCCDLGSSLSRLLDMSEDS 551

Query: 363  FWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGF 422
            FWRTGW+Y RVQ+ +AFIY+GQVVLDTPL  KSH +CRISSIKPIAVPVSE+ +FVVKGF
Sbjct: 552  FWRTGWVYTRVQNRLAFIYSGQVVLDTPLPFKSH-NCRISSIKPIAVPVSEQAQFVVKGF 610

Query: 423  NLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVE 482
            NL+ S TRLLCA+EG YLVQETCY+L  G DT  E+D+LQCLSFPCS+PN+ GRGFIEVE
Sbjct: 611  NLAGSATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCLSFPCSVPNISGRGFIEVE 670

Query: 483  DHGLSSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGW 542
            DHGL+SSF PFIVAEQ+VCSEICMLE  I+  E ++D  +   K + K QALDF+HEMGW
Sbjct: 671  DHGLNSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRETGKMQAKYQALDFIHEMGW 730

Query: 543  LLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHT 602
            LLHR++LKFR+G + PN   FPFKRFK L+EFS++HDWCAVVKKLLGI+F GTV+ G+H 
Sbjct: 731  LLHRNYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVVKKLLGIVFSGTVNAGEHP 790

Query: 603  SSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNV 662
            S E+A+L+M LLH AVRRNCRPMVELLL + PD +LDK GS  K+  + +GS ++FKP+ 
Sbjct: 791  SIEIALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSNDKRWPN-SGSNYLFKPDF 849

Query: 663  IGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSY 722
            +GPAGLTPLH+AA  D +ENVLDALTDDP  VGIEAWKSA+D  G TPNDYA LR H+SY
Sbjct: 850  VGPAGLTPLHIAASMDGSENVLDALTDDPELVGIEAWKSARDKVGSTPNDYACLRGHNSY 909

Query: 723  IHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQ 782
            I LVQ+KIN K +   RV+LDIP + +D ++K KP  G KS RV SLQ EK   +  +Q 
Sbjct: 910  IQLVQKKINNKLNR--RVVLDIPDAPLDCNTKPKPSDGLKSVRVPSLQIEK---QAARQH 964

Query: 783  CRLCEQKVAYRN--MRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELL 840
            C+LCEQK+AY +  MR+SL YRP MLSMVAIAAVCVCVALLFKSSPEVLY+FRPFRWELL
Sbjct: 965  CKLCEQKLAYGDTRMRTSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELL 1024

Query: 841  KYGSS 845
            KYGSS
Sbjct: 1025 KYGSS 1029

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556564|ref|XP_002519316.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223541631|gb|EEF43180.1| Squamosa promoter-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|422779156|gb|AFX82677.1| squamosa promoter binding protein 5 [Vitis pseudoreticulata] Back     alignment and taxonomy information
>gi|297736802|emb|CBI26003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532884|ref|XP_003534999.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356558528|ref|XP_003547557.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max] Back     alignment and taxonomy information
>gi|356519885|ref|XP_003528599.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147820979|emb|CAN74605.1| hypothetical protein VITISV_025316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548291|ref|XP_002515202.1| conserved hypothetical protein [Ricinus communis] gi|223545682|gb|EEF47186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query845
TAIR|locus:2041329881 SPL1 "squamosa promoter bindin 0.517 0.496 0.471 5.4e-184
TAIR|locus:2101402927 SPL12 "squamosa promoter-bindi 0.507 0.462 0.460 5e-125
TAIR|locus:20373551035 SPL14 "squamosa promoter bindi 0.411 0.336 0.332 1.5e-53
TAIR|locus:2011706988 AT1G76580 [Arabidopsis thalian 0.397 0.340 0.302 2e-46
TAIR|locus:2009675174 SPL4 "squamosa promoter bindin 0.046 0.224 0.692 1.1e-08
TAIR|locus:2057656131 SPL3 "squamosa promoter bindin 0.037 0.244 0.781 5e-08
TAIR|locus:2087105181 SPL5 "squamosa promoter bindin 0.043 0.204 0.702 8.2e-08
TAIR|locus:2159717359 SPL13A "SQUAMOSA PROMOTER-BIND 0.040 0.094 0.705 1.1e-06
TAIR|locus:2832472359 SPL13B "SQUAMOSA PROMOTER-BIND 0.040 0.094 0.705 1.1e-06
TAIR|locus:2026428405 AT1G69170 [Arabidopsis thalian 0.033 0.069 0.857 1.1e-06
TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1038 (370.5 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
 Identities = 221/469 (47%), Positives = 288/469 (61%)

Query:   170 NDAHSGRVQALSASQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEH 229
             N A  G  QA    + ++ F +R   +A  N  E    + KM++ DLN++Y DS +    
Sbjct:   257 NSALLGIEQA--PQEELKQFSARQDGTATENRSEK---QVKMNDFDLNDIYIDSDDT--D 309

Query:   230 LELSHAPVNPGPVSLYSPLWLHPGSNKSSPPXXXXXXXXXXXXXXXXXXXXXXXRTDRIV 289
             +E S  P NP   SL  P W+H    +SSPP                       RT RIV
Sbjct:   310 VERSPPPTNPATSSLDYPSWIH----QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIV 365

Query:   290 FKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCXXX 349
             FKLFGK+PN+FP+VLR QILDWLSHSPTD+ESYIRPGCIVLTIYLR  +  WEEL     
Sbjct:   366 FKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLG 425

Query:   350 XXXXXXXXXXXXXFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAV 409
                           W TGW+Y RVQ+ +AF+YNGQVV+DT L LKS     I S+KP+A+
Sbjct:   426 FSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAI 485

Query:   410 PVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADT-VNENDEL-QCLSFP 467
               +E+ +F VKG NL +  TRLLC++EG YL+QET +D     D    +N E+ +C++F 
Sbjct:   486 AATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFS 545

Query:   468 CSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQE-VCSEICMLESAIEAAEISDDFQKIAEK 526
             C +P + GRGF+E+ED GLSSSF PF+V E + VCSEI +LE+ +E              
Sbjct:   546 CDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTG----------- 594

Query:   527 TEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKK 586
             T+   QA+DF+HE+GWLLHRS L    G   PN   FP  RF+WL+EFSM+ +WCAV++K
Sbjct:   595 TDSAKQAMDFIHEIGWLLHRSKL----GESDPNPGVFPLIRFQWLIEFSMDREWCAVIRK 650

Query:   587 LLGILFDGTVDTGDHTSSELAIL-EMGLLHKAVRRNCRPMVELLLNYAP 634
             LL + FDG V  G+ +SS  A L E+ LLH+AVR+N +PMVE+LL Y P
Sbjct:   651 LLNMFFDGAV--GEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIP 697
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SMX9SPL1_ARATHNo assigned EC number0.49940.85910.8240yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
pfam0311079 pfam03110, SBP, SBP domain 7e-18
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 3e-07
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 8e-05
>gnl|CDD|190527 pfam03110, SBP, SBP domain Back     alignment and domain information 
 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 2  GRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPD 34
           RFH+L EFDEGKRSCRRRLAGHN+RRRK  PD
Sbjct: 47 SRFHLLSEFDEGKRSCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 845
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.79
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.78
PHA02791284 ankyrin-like protein; Provisional 99.78
PHA02791284 ankyrin-like protein; Provisional 99.75
PHA02741169 hypothetical protein; Provisional 99.75
PHA02875 413 ankyrin repeat protein; Provisional 99.73
PHA02875 413 ankyrin repeat protein; Provisional 99.72
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.72
PHA02874 434 ankyrin repeat protein; Provisional 99.7
PHA02946 446 ankyin-like protein; Provisional 99.7
PHA02736154 Viral ankyrin protein; Provisional 99.7
PHA02874434 ankyrin repeat protein; Provisional 99.69
PHA02859209 ankyrin repeat protein; Provisional 99.69
PHA02743166 Viral ankyrin protein; Provisional 99.69
PHA02859209 ankyrin repeat protein; Provisional 99.69
PHA02795437 ankyrin-like protein; Provisional 99.68
PHA02878 477 ankyrin repeat protein; Provisional 99.68
PHA03095471 ankyrin-like protein; Provisional 99.67
PHA03100 480 ankyrin repeat protein; Provisional 99.67
PHA03100 480 ankyrin repeat protein; Provisional 99.67
PHA02884300 ankyrin repeat protein; Provisional 99.64
PHA02989494 ankyrin repeat protein; Provisional 99.63
PHA02878477 ankyrin repeat protein; Provisional 99.63
PHA02876 682 ankyrin repeat protein; Provisional 99.63
PLN03192823 Voltage-dependent potassium channel; Provisional 99.62
PHA02989 494 ankyrin repeat protein; Provisional 99.62
PHA02798 489 ankyrin-like protein; Provisional 99.61
PHA02798489 ankyrin-like protein; Provisional 99.61
PHA02946 446 ankyin-like protein; Provisional 99.61
PHA02876 682 ankyrin repeat protein; Provisional 99.6
KOG0510 929 consensus Ankyrin repeat protein [General function 99.59
PHA02795437 ankyrin-like protein; Provisional 99.59
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.59
PHA02741169 hypothetical protein; Provisional 99.58
PHA03095471 ankyrin-like protein; Provisional 99.58
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.58
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.57
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.57
PHA02917 661 ankyrin-like protein; Provisional 99.53
KOG0510 929 consensus Ankyrin repeat protein [General function 99.53
KOG0514452 consensus Ankyrin repeat protein [General function 99.52
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.51
PHA02743166 Viral ankyrin protein; Provisional 99.51
PHA02917 661 ankyrin-like protein; Provisional 99.5
PHA02730672 ankyrin-like protein; Provisional 99.49
PHA02736154 Viral ankyrin protein; Provisional 99.48
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.48
KOG0508 615 consensus Ankyrin repeat protein [General function 99.48
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.48
PHA02730672 ankyrin-like protein; Provisional 99.48
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.47
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.42
PLN03192823 Voltage-dependent potassium channel; Provisional 99.41
PHA02884300 ankyrin repeat protein; Provisional 99.41
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.4
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.4
PHA02792 631 ankyrin-like protein; Provisional 99.38
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.38
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.37
KOG0514452 consensus Ankyrin repeat protein [General function 99.36
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.35
PHA02792631 ankyrin-like protein; Provisional 99.34
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.33
KOG0508 615 consensus Ankyrin repeat protein [General function 99.33
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.32
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.29
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.28
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.24
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.2
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.15
PF0311079 SBP: SBP domain; InterPro: IPR004333 The SBP plant 99.15
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.13
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 99.13
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.12
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.1
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.08
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.07
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.06
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 99.02
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 99.02
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.01
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 98.99
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 98.92
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 98.88
KOG4214117 consensus Myotrophin and similar proteins [Transcr 98.82
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 98.78
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.55
KOG0705749 consensus GTPase-activating protein Centaurin gamm 98.43
KOG0522 560 consensus Ankyrin repeat protein [General function 98.28
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.27
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 98.26
PF1360630 Ank_3: Ankyrin repeat 98.13
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.12
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 98.05
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 98.03
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 97.96
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 97.95
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 97.92
KOG0520 975 consensus Uncharacterized conserved protein, conta 97.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 97.78
KOG0522 560 consensus Ankyrin repeat protein [General function 97.73
PF1360630 Ank_3: Ankyrin repeat 97.69
KOG0521785 consensus Putative GTPase activating proteins (GAP 97.69
KOG0783 1267 consensus Uncharacterized conserved protein, conta 97.64
KOG0705749 consensus GTPase-activating protein Centaurin gamm 97.5
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 97.43
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 97.26
KOG2384223 consensus Major histocompatibility complex protein 97.16
KOG0521785 consensus Putative GTPase activating proteins (GAP 97.03
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 97.01
KOG0520 975 consensus Uncharacterized conserved protein, conta 96.89
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 95.64
KOG2505591 consensus Ankyrin repeat protein [General function 95.52
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 95.52
KOG2505591 consensus Ankyrin repeat protein [General function 94.87
KOG0511 516 consensus Ankyrin repeat protein [General function 93.96
KOG2384223 consensus Major histocompatibility complex protein 93.86
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 93.43
KOG0511 516 consensus Ankyrin repeat protein [General function 91.87
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.79  E-value=1.2e-19  Score=181.54  Aligned_cols=150  Identities=22%  Similarity=0.148  Sum_probs=105.4

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCC---ch
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNY-APDNVLDKPG---SR  644 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~-gad~~~~~~~---~~  644 (845)
                      |++||||+..|..++|++||..   .++     .++++|..|+||||.|+..|+.|+||-||.. |+|.+...++   ++
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq---~nv-----~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~L  110 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQ---PNV-----KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCL  110 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhc---CCC-----CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCccee
Confidence            5899999999999999999973   334     3346677899999999999999999999988 8886644432   34


Q ss_pred             hhhhhhccCCccc------ccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcC
Q 003138          645 QKQLVDRAGSGFI------FKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRA  718 (845)
Q Consensus       645 ~k~lv~~~~~~~~------f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~G  718 (845)
                      ++++=++..+...      ..++.+|..|.||||-||..|..+ |+++|      ++.||-+|..|..|+||||.|..-|
T Consensus       111 HyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklk-vie~L------i~~~a~~n~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  111 HYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK-VIEYL------ISQGAPLNTQDKYGFTPLHHALAEG  183 (226)
T ss_pred             hhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchh-hHHHH------HhcCCCCCcccccCccHHHHHHhcc
Confidence            4443222222111      146667777777777777776665 67777      4456667777777777777776666


Q ss_pred             CHHHHHHHHHhhhhc
Q 003138          719 HHSYIHLVQRKINKK  733 (845)
Q Consensus       719 n~e~ieLL~~kl~~~  733 (845)
                      |.++.-+|+++.++.
T Consensus       184 ~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  184 HPDVAVLLVRAGADT  198 (226)
T ss_pred             CchHHHHHHHhccce
Confidence            777777777666543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
1ul4_A94 Solution Structure Of The Dna-Binding Domain Of Squ 1e-07
1ul5_A88 Solution Structure Of The Dna-binding Domain Of Squ 3e-06
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 3  RFHVLQEFDEGKRSCRRRLAGHNKRRRK 30
          RFH LQEFDE KRSCRRRLAGHN+RRRK
Sbjct: 57 RFHDLQEFDEAKRSCRRRLAGHNERRRK 84
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query845
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 2e-12
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2etb_A256 Transient receptor potential cation channel subfam 4e-06
2pnn_A273 Transient receptor potential cation channel subfa 6e-06
3jxi_A260 Vanilloid receptor-related osmotically activated p 1e-04
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 1e-04
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 1e-04
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 4e-04
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 4e-04
2rfa_A232 Transient receptor potential cation channel subfa 5e-04
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 Back     alignment and structure
 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 2  GRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGG 40
           RFH LQEFDE KRSCRRRLAGHN+RRRK+  ++  + G
Sbjct: 56 SRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESGPSSG 94
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query845
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.88
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.87
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.85
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.84
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.84
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.84
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.84
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.84
2etb_A256 Transient receptor potential cation channel subfam 99.84
2rfa_A232 Transient receptor potential cation channel subfa 99.84
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.84
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.84
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.84
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.84
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.84
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.84
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.83
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.83
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.83
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.83
2pnn_A273 Transient receptor potential cation channel subfa 99.83
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.83
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.82
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 99.82
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.82
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.82
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.82
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.82
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.82
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.81
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.81
3hra_A201 Ankyrin repeat family protein; structural protein; 99.81
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 99.81
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.81
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.81
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.81
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.81
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.81
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.81
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.8
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 99.8
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.8
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.8
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.8
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.8
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.8
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.8
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.8
2etb_A256 Transient receptor potential cation channel subfam 99.79
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.79
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.79
2pnn_A273 Transient receptor potential cation channel subfa 99.79
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.79
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.79
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.79
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.79
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.79
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.79
2rfa_A232 Transient receptor potential cation channel subfa 99.79
3hra_A201 Ankyrin repeat family protein; structural protein; 99.79
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.79
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.78
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.78
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.78
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.78
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.78
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.78
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 99.78
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.78
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 99.78
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.78
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.77
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.77
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.77
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 99.77
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.77
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.76
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.76
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.76
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.76
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 99.76
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.75
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.75
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.75
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 99.75
1sw6_A327 Regulatory protein SWI6; transcription regulation, 99.75
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.75
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.74
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.74
1n11_A 437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.74
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.73
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.73
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.72
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.72
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.72
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 99.71
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.69
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.69
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.69
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.69
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.68
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.67
1sw6_A327 Regulatory protein SWI6; transcription regulation, 99.67
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.65
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.62
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 99.61
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.59
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.56
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.56
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.5
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.49
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.48
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.47
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 99.43
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.4
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 99.33
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
Probab=99.88  E-value=1.2e-22  Score=198.23  Aligned_cols=152  Identities=24%  Similarity=0.190  Sum_probs=116.5

Q ss_pred             cchHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhh
Q 003138          568 FKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQ  647 (845)
Q Consensus       568 f~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~  647 (845)
                      +.+.|+.|+++|+.++|+.||+.+.         +++..+..|+||||+|+..++.+++++||++|++            
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~~Ga---------dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad------------   62 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIENGA---------DVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD------------   62 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTC---------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCC---------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc------------
Confidence            3456889999999999999998653         2334567799999999999999999999999986            


Q ss_pred             hhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHH
Q 003138          648 LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQ  727 (845)
Q Consensus       648 lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~  727 (845)
                                  +|.++..|+||||+|+..++.+ ++++|++      .||++|.+|.+|+||||+|+.+|+.+++++|+
T Consensus        63 ------------~~~~d~~g~TpLh~A~~~g~~~-~v~~Ll~------~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll  123 (169)
T 4gpm_A           63 ------------VNAKDSDGRTPLHHAAENGHKE-VVKLLIS------KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI  123 (169)
T ss_dssp             ------------TTCCCTTSCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ------------hhhhccCCCCHHHHHHHcCCHH-HHHHHHH------CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                        4566778888888888887765 7888854      46788888888888888888888888888887


Q ss_pred             HhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccccccchhhhhh
Q 003138          728 RKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVM  779 (845)
Q Consensus       728 ~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~~~~~~~~~~~  779 (845)
                      ++.++-.         +           +...+.|+++++...++..+++.+
T Consensus       124 ~~gad~~---------~-----------~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A          124 SKGADVN---------T-----------SDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             HTTCCTT---------C-----------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCcc---------c-----------cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7654322         1           223456778888776655555444
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 845
d1ul4a_81 g.72.1.1 (A:) Squamosa promoter binding protein-li 6e-14
d1ul5a_86 g.72.1.1 (A:) Squamosa promoter binding protein-li 8e-14
d1wdya_285 d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas 6e-05
d1n11a_408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 3e-04
d1n11a_ 408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 7e-04
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 Back     information, alignment and structure

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.6 bits (160), Expect = 6e-14
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 2  GRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPD 34
           RFH LQEFDE KRSCRRRLAGHN+RRRK+  +
Sbjct: 49 SRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE 81
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query845
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.82
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.82
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.81
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.8
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.8
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.8
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.79
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.78
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.78
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.78
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.78
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.76
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.76
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.75
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.73
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.73
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.72
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.69
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.68
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.68
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.67
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.67
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.63
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.63
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.61
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.6
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.6
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.58
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.56
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.55
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.51
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.47
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.47
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.42
d1ul4a_81 Squamosa promoter binding protein-like 4, DNA-bind 99.39
d1ul5a_86 Squamosa promoter binding protein-like 7, DNA-bind 99.38
d1qhoa181 Five domain "maltogenic" alpha-amylase (glucan 1,4 82.33
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.5e-20  Score=182.12  Aligned_cols=179  Identities=20%  Similarity=0.148  Sum_probs=116.2

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-C--Cchh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-P--GSRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~--~~~~  645 (845)
                      +++||+|+.+|+.++++.||+.+.+..      ....++..|.||||+||++|+.++|++||++|++++... .  .|.+
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHE------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSG------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcc------cccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            489999999999999999998763321      112345679999999999999999999999999876322 1  2333


Q ss_pred             hhhhhccCC------------ccc-----------------------------------------ccCCCCCCCCChHHH
Q 003138          646 KQLVDRAGS------------GFI-----------------------------------------FKPNVIGPAGLTPLH  672 (845)
Q Consensus       646 k~lv~~~~~------------~~~-----------------------------------------f~pNa~g~~G~TPLH  672 (845)
                      .++..+..+            ...                                         .+.|.++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            222111000            000                                         023456667778888


Q ss_pred             HHHhCCChHHHHHHhhcCCCCCCcccccCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccc
Q 003138          673 VAACRDDAENVLDALTDDPGSVGIEAWKSA-QDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDW  751 (845)
Q Consensus       673 iAA~~~~~e~VvelLl~~p~~ig~gA~vNa-kD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~  751 (845)
                      +|+..++.+ ++++|++      .+++.+. ++..|.||||+|+..|+.+++++|+++.++-.                 
T Consensus       164 ~A~~~~~~~-~v~~Ll~------~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin-----------------  219 (255)
T d1oy3d_         164 VAVIHKDAE-MVRLLRD------AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-----------------  219 (255)
T ss_dssp             HHHHTTCHH-HHHHHHH------HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------
T ss_pred             ccccccccc-cccchhc------ccccccccccccccccccccccccHHHHHHHHHHCCCCCC-----------------
Confidence            887777665 6777754      3444454 35667788888877777777777766533211                 


Q ss_pred             cccCCCCCCCCccccccccccchhhhhhc
Q 003138          752 DSKQKPLKGNKSSRVLSLQTEKITTKVMQ  780 (845)
Q Consensus       752 ~~~~k~~~~~~~~~i~~~~~~~~~~~~~~  780 (845)
                         .+...+.|+||++...+++.+++.+.
T Consensus       220 ---~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         220 ---ARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             ---CCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ---CCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence               13334567788877766655555443
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure